| 1 |
gutsche |
1.1 |
from Scheduler import Scheduler
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from JobList import JobList
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from crab_logger import Logger
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from crab_exceptions import *
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from crab_util import *
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from GridCatService import GridCatHostService
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| 7 |
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import time
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import common
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import os, sys, time
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class SchedulerCondor_g(Scheduler):
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def __init__(self):
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Scheduler.__init__(self,"CONDOR_G")
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self.states = [ "Acl", "cancelReason", "cancelling","ce_node","children", \
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"children_hist","children_num","children_states","condorId","condor_jdl", \
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"cpuTime","destination", "done_code","exit_code","expectFrom", \
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"expectUpdate","globusId","jdl","jobId","jobtype", \
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"lastUpdateTime","localId","location", "matched_jdl","network_server", \
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"owner","parent_job", "reason","resubmitted","rsl","seed",\
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"stateEnterTime","stateEnterTimes","subjob_failed", \
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"user tags" , "status" , "status_code","hierarchy"]
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| 24 |
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# check for locally running condor scheduler
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cmd = 'ps xau | grep -i condor_schedd | grep -v grep'
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cmd_out = runCommand(cmd)
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if cmd_out == None:
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print '[Condor-G Scheduler]: condor_schedd is not running on this machine.'
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print '[Condor-G Scheduler]: Please use another machine with installed condor and running condor_schedd or change the Scheduler in your crab.cfg.'
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sys.exit(1)
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self.checkExecutableInPath('condor_q')
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self.checkExecutableInPath('condor_submit')
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self.checkExecutableInPath('condor_version')
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| 36 |
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# get version number
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cmd = 'condor_version'
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cmd_out = runCommand(cmd)
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if cmd != None :
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tmp = cmd_out.find('CondorVersion') + 15
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version = cmd_out[tmp:tmp+6].split('.')
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version_master = int(version[0])
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version_major = int(version[1])
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version_minor = int(version[2])
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else :
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print '[Condor-G Scheduler]: condor_version was not able to determine the installed condor version.'
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print '[Condor-G Scheduler]: Please use another machine with properly installed condor or change the Scheduler in your crab.cfg.'
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| 48 |
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sys.exit(1)
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| 49 |
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| 50 |
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self.checkExecutableInPath('condor_config_val')
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| 52 |
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self.checkCondorVariablePointsToFile('GRIDMANAGER')
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if version_master >= 6 and version_major >= 7 and version_minor >= 11 :
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self.checkCondorVariablePointsToFile('GT2_GAHP')
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else :
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self.checkCondorVariablePointsToFile('GAHP')
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| 59 |
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self.checkCondorVariablePointsToFile('GRID_MONITOR')
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self.checkCondorVariableIsTrue('ENABLE_GRID_MONITOR')
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max_submit = self.queryCondorVariable('GRIDMANAGER_MAX_SUBMITTED_JOBS_PER_RESOURCE')
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max_pending = self.queryCondorVariable('GRIDMANAGER_MAX_PENDING_SUBMITS_PER_RESOURCE')
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| 65 |
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print '[Condor-G Scheduler]'
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print 'Maximal number of jobs submitted to the grid : GRIDMANAGER_MAX_SUBMITTED_JOBS_PER_RESOURCE = ',max_submit
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print 'Maximal number of parallel submits to the grid : GRIDMANAGER_MAX_PENDING_SUBMITS_PER_RESOURCE = ',max_pending
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print 'Ask the administrator of your local condor installation to increase these variables to enable more jobs to be executed on the grid in parallel.\n'
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return
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def checkExecutableInPath(self, name):
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# check if executable is in PATH
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cmd = 'which '+name
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cmd_out = runCommand(cmd)
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if cmd_out == None:
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print '[Condor-G Scheduler]: ',name,' is not in the $PATH on this machine.'
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print '[Condor-G Scheduler]: Please use another machine with installed condor or change the Scheduler in your crab.cfg.'
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sys.exit(1)
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def checkCondorVariablePointsToFile(self, name):
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## check for condor variable
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cmd = 'condor_config_val '+name
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cmd_out = runCommand(cmd)
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if os.path.isfile(cmd_out) > 0 :
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print '[Condor-G Scheduler]: the variable ',name,' is not properly set for the condor installation on this machine.'
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print '[Condor-G Scheduler]: Please ask the administrator of the local condor installation to set the variable ',name,' properly,',
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'use another machine with properly installed condor or change the Scheduler in your crab.cfg.'
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sys.exit(1)
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| 91 |
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| 92 |
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def checkCondorVariableIsTrue(self, name):
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## check for condor variable
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cmd = 'condor_config_val '+name
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cmd_out = runCommand(cmd)
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if cmd_out == 'TRUE' :
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print '[Condor-G Scheduler]: the variable ',name,' is not set to true for the condor installation on this machine.'
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| 98 |
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print '[Condor-G Scheduler]: Please ask the administrator of the local condor installation to set the variable ',name,' to true,',
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'use another machine with properly installed condor or change the Scheduler in your crab.cfg.'
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| 100 |
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sys.exit(1)
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| 101 |
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| 102 |
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def queryCondorVariable(self, name):
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## check for condor variable
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cmd = 'condor_config_val '+name
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return runCommand(cmd)
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| 106 |
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| 107 |
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def configure(self, cfg_params):
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| 108 |
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self.copy_input_data = 0
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| 110 |
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try: self.return_data = cfg_params['USER.return_data']
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except KeyError: self.return_data = 1
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| 113 |
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try:
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self.copy_data = cfg_params["USER.copy_data"]
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| 116 |
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if int(self.copy_data) == 1:
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try:
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| 118 |
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self.SE = cfg_params['USER.storage_element']
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| 119 |
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self.SE_PATH = cfg_params['USER.storage_path']
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except KeyError:
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| 121 |
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msg = "Error. The [USER] section does not have 'storage_element'"
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msg = msg + " and/or 'storage_path' entries, necessary to copy the output"
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common.logger.message(msg)
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raise CrabException(msg)
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except KeyError: self.copy_data = 0
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| 126 |
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| 127 |
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if ( int(self.return_data) == 0 and int(self.copy_data) == 0 ):
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msg = 'Warning: return_data = 0 and copy_data = 0 ==> your exe output will be lost\n'
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msg = msg + 'Please modify return_data and copy_data value in your crab.cfg file\n'
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raise CrabException(msg)
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| 131 |
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| 132 |
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try:
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| 133 |
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self.lfc_host = cfg_params['EDG.lfc_host']
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| 134 |
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except KeyError:
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| 135 |
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msg = "Error. The [EDG] section does not have 'lfc_host' value"
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| 136 |
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msg = msg + " it's necessary to know the LFC host name"
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common.logger.message(msg)
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| 138 |
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raise CrabException(msg)
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| 139 |
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try:
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| 140 |
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self.lcg_catalog_type = cfg_params['EDG.lcg_catalog_type']
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| 141 |
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except KeyError:
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| 142 |
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msg = "Error. The [EDG] section does not have 'lcg_catalog_type' value"
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| 143 |
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msg = msg + " it's necessary to know the catalog type"
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common.logger.message(msg)
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raise CrabException(msg)
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| 146 |
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try:
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| 147 |
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self.lfc_home = cfg_params['EDG.lfc_home']
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| 148 |
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except KeyError:
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| 149 |
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msg = "Error. The [EDG] section does not have 'lfc_home' value"
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| 150 |
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msg = msg + " it's necessary to know the home catalog dir"
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common.logger.message(msg)
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| 152 |
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raise CrabException(msg)
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| 153 |
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| 154 |
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try: self.VO = cfg_params['EDG.virtual_organization']
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| 155 |
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except KeyError: self.VO = 'cms'
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| 156 |
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| 157 |
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try: self.EDG_clock_time = cfg_params['EDG.max_wall_clock_time']
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| 158 |
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except KeyError: self.EDG_clock_time= ''
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| 159 |
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| 160 |
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self.register_data = 0
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| 161 |
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| 162 |
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# check if one and only one entry is in $CE_WHITELIST
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| 163 |
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| 164 |
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try:
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tmpGood = string.split(cfg_params['EDG.ce_white_list'],',')
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| 166 |
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except KeyError:
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| 167 |
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print '[Condor-G Scheduler]: destination site is not selected properly.'
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| 168 |
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print '[Condor-G Scheduler]: Please select your destination site and only your destination site in the CE_white_list variable of the [EDG] section in your crab.cfg.'
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| 169 |
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sys.exit(1)
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| 170 |
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| 171 |
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if len(tmpGood) != 1 :
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| 172 |
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print '[Condor-G Scheduler]: destination site is not selected properly.'
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| 173 |
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print '[Condor-G Scheduler]: Please select your destination site and only your destination site in the CE_white_list variable of the [EDG] section in your crab.cfg.'
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| 174 |
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sys.exit(1)
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| 175 |
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| 176 |
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# activate Boss per default
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| 177 |
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try:
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| 178 |
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self.UseBoss = cfg_params['CRAB.use_boss'];
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| 179 |
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except KeyError:
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| 180 |
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self.UseBoss = '1';
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| 181 |
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| 182 |
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try:
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| 183 |
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self.UseGT4 = cfg_params['USER.use_gt_4'];
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| 184 |
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except KeyError:
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| 185 |
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self.UseGT4 = 0;
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| 186 |
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| 187 |
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self.proxyValid=0
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| 188 |
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# added here because checklistmatch is not used
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| 189 |
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self.checkProxy()
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| 190 |
gutsche |
1.6 |
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| 191 |
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self._taskId = cfg_params['taskId']
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| 192 |
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| 193 |
gutsche |
1.1 |
return
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| 194 |
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| 195 |
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| 196 |
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def sched_parameter(self):
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| 197 |
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"""
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| 198 |
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Returns file with scheduler-specific parameters
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| 199 |
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"""
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| 200 |
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return 0
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| 201 |
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| 202 |
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def wsSetupEnvironment(self):
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| 203 |
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"""
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| 204 |
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Returns part of a job script which does scheduler-specific work.
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| 205 |
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"""
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| 206 |
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txt = ''
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| 207 |
gutsche |
1.6 |
|
| 208 |
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txt = ''
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| 209 |
mkirn |
1.11 |
txt += '# strip arguments\n'
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| 210 |
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txt += 'echo "strip arguments"\n'
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| 211 |
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txt += 'args=("$@")\n'
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| 212 |
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txt += 'nargs=$#\n'
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| 213 |
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txt += 'shift $nargs\n'
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| 214 |
gutsche |
1.6 |
txt += "# job number (first parameter for job wrapper)\n"
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| 215 |
mkirn |
1.11 |
#txt += "NJob=$1\n"
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| 216 |
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txt += "NJob=${args[0]}\n"
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| 217 |
gutsche |
1.6 |
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| 218 |
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# create hash of cfg file
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| 219 |
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hash = makeCksum(common.work_space.cfgFileName())
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| 220 |
gutsche |
1.7 |
txt += 'MonitorJobID=`echo ${NJob}_'+hash+'_$GLOBUS_GRAM_JOB_CONTACT`\n'
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| 221 |
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txt += 'SyncGridJobId=`echo $GLOBUS_GRAM_JOB_CONTACT`\n'
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| 222 |
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txt += 'MonitorID=`echo ' + self._taskId + '`\n'
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| 223 |
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txt += 'echo "MonitorJobID=`echo $MonitorJobID`" | tee -a $RUNTIME_AREA/$repo \n'
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| 224 |
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txt += 'echo "SyncGridJobId=`echo $SyncGridJobId`" | tee -a $RUNTIME_AREA/$repo \n'
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| 225 |
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txt += 'echo "MonitorID=`echo $MonitorID`" | tee -a $RUNTIME_AREA/$repo\n'
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| 226 |
gutsche |
1.6 |
|
| 227 |
fanzago |
1.2 |
txt += 'echo "middleware discovery " \n'
|
| 228 |
gutsche |
1.1 |
txt += 'if [ $VO_CMS_SW_DIR ]; then\n'
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| 229 |
gutsche |
1.6 |
txt += ' middleware=LCG \n'
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| 230 |
|
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txt += ' echo "SyncCE=`edg-brokerinfo getCE`" | tee -a $RUNTIME_AREA/$repo \n'
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| 231 |
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txt += ' echo "GridFlavour=`echo $middleware`" | tee -a $RUNTIME_AREA/$repo \n'
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| 232 |
|
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txt += ' echo "middleware =$middleware" \n'
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| 233 |
gutsche |
1.1 |
txt += 'elif [ $GRID3_APP_DIR ]; then\n'
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| 234 |
gutsche |
1.6 |
txt += ' middleware=OSG \n'
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| 235 |
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txt += ' echo "SyncCE=`echo $hostname`" | tee -a $RUNTIME_AREA/$repo \n'
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| 236 |
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txt += ' echo "GridFlavour=`echo $middleware`" | tee -a $RUNTIME_AREA/$repo \n'
|
| 237 |
|
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txt += ' echo "middleware =$middleware" \n'
|
| 238 |
gutsche |
1.1 |
txt += 'elif [ $OSG_APP ]; then \n'
|
| 239 |
gutsche |
1.6 |
txt += ' middleware=OSG \n'
|
| 240 |
|
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txt += ' echo "SyncCE=`echo $hostname`" | tee -a $RUNTIME_AREA/$repo \n'
|
| 241 |
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txt += ' echo "GridFlavour=`echo $middleware`" | tee -a $RUNTIME_AREA/$repo \n'
|
| 242 |
|
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txt += ' echo "middleware =$middleware" \n'
|
| 243 |
gutsche |
1.1 |
txt += 'else \n'
|
| 244 |
gutsche |
1.6 |
txt += ' echo "SET_CMS_ENV 10030 ==> middleware not identified" \n'
|
| 245 |
|
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txt += ' echo "JOB_EXIT_STATUS = 10030" \n'
|
| 246 |
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txt += ' echo "JobExitCode=10030" | tee -a $RUNTIME_AREA/$repo \n'
|
| 247 |
|
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txt += ' dumpStatus $RUNTIME_AREA/$repo \n'
|
| 248 |
gutsche |
1.7 |
txt += ' rm -f $RUNTIME_AREA/$repo \n'
|
| 249 |
|
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txt += ' echo "MonitorJobID=`echo $MonitorJobID`" | tee -a $RUNTIME_AREA/$repo \n'
|
| 250 |
|
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txt += ' echo "MonitorID=`echo $MonitorID`" | tee -a $RUNTIME_AREA/$repo\n'
|
| 251 |
gutsche |
1.6 |
txt += ' exit 1 \n'
|
| 252 |
gutsche |
1.1 |
txt += 'fi\n'
|
| 253 |
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|
| 254 |
gutsche |
1.6 |
txt += '# report first time to DashBoard \n'
|
| 255 |
|
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txt += 'dumpStatus $RUNTIME_AREA/$repo \n'
|
| 256 |
gutsche |
1.7 |
txt += 'rm -f $RUNTIME_AREA/$repo \n'
|
| 257 |
|
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txt += 'echo "MonitorJobID=`echo $MonitorJobID`" | tee -a $RUNTIME_AREA/$repo \n'
|
| 258 |
|
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txt += 'echo "MonitorID=`echo $MonitorID`" | tee -a $RUNTIME_AREA/$repo\n'
|
| 259 |
gutsche |
1.6 |
|
| 260 |
gutsche |
1.1 |
txt += '\n\n'
|
| 261 |
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|
| 262 |
|
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if int(self.copy_data) == 1:
|
| 263 |
|
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if self.SE:
|
| 264 |
|
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txt += 'export SE='+self.SE+'\n'
|
| 265 |
|
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txt += 'echo "SE = $SE"\n'
|
| 266 |
|
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if self.SE_PATH:
|
| 267 |
|
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if ( self.SE_PATH[-1] != '/' ) : self.SE_PATH = self.SE_PATH + '/'
|
| 268 |
|
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txt += 'export SE_PATH='+self.SE_PATH+'\n'
|
| 269 |
|
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txt += 'echo "SE_PATH = $SE_PATH"\n'
|
| 270 |
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|
| 271 |
|
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txt += 'export VO='+self.VO+'\n'
|
| 272 |
mkirn |
1.12 |
# txt += 'CE=$4\n'
|
| 273 |
|
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txt += 'CE=${args[3]}
|
| 274 |
gutsche |
1.1 |
txt += 'echo "CE = $CE"\n'
|
| 275 |
|
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return txt
|
| 276 |
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|
| 277 |
|
|
def wsCopyInput(self):
|
| 278 |
|
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"""
|
| 279 |
|
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Copy input data from SE to WN
|
| 280 |
|
|
"""
|
| 281 |
|
|
txt = '\n'
|
| 282 |
|
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return txt
|
| 283 |
|
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|
| 284 |
|
|
def wsCopyOutput(self):
|
| 285 |
|
|
"""
|
| 286 |
|
|
Write a CopyResults part of a job script, e.g.
|
| 287 |
|
|
to copy produced output into a storage element.
|
| 288 |
|
|
"""
|
| 289 |
|
|
txt = ''
|
| 290 |
|
|
if int(self.copy_data) == 1:
|
| 291 |
|
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txt += '#\n'
|
| 292 |
|
|
txt += '# Copy output to SE = $SE\n'
|
| 293 |
|
|
txt += '#\n'
|
| 294 |
gutsche |
1.9 |
#txt += 'if [ $exe_result -eq 0 ]; then\n'
|
| 295 |
|
|
txt += ' echo "X509_USER_PROXY = $X509_USER_PROXY"\n'
|
| 296 |
|
|
txt += ' echo "source $OSG_APP/glite/setup_glite_ui.sh"\n'
|
| 297 |
|
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txt += ' source $OSG_APP/glite/setup_glite_ui.sh\n'
|
| 298 |
|
|
txt += ' export X509_CERT_DIR=$OSG_APP/glite/etc/grid-security/certificates\n'
|
| 299 |
|
|
txt += ' echo "export X509_CERT_DIR=$X509_CERT_DIR"\n'
|
| 300 |
gutsche |
1.1 |
txt += ' for out_file in $file_list ; do\n'
|
| 301 |
gutsche |
1.9 |
txt += ' echo "Trying to copy output file to $SE using lcg-cp"\n'
|
| 302 |
mkirn |
1.13 |
if common.logger.debugLevel() >= 5:
|
| 303 |
|
|
txt += ' echo "lcg-cp --vo $VO --verbose -t 2400 file://`pwd`/$out_file gsiftp://${SE}${SE_PATH}$out_file"\n'
|
| 304 |
|
|
txt += ' exitstring=`lcg-cp --vo $VO --verbose -t 2400 file://\`pwd\`/$out_file gsiftp://${SE}${SE_PATH}$out_file 2>&1`\n'
|
| 305 |
|
|
else:
|
| 306 |
|
|
txt += ' echo "lcg-cp --vo $VO -t 2400 file://`pwd`/$out_file gsiftp://${SE}${SE_PATH}$out_file"\n'
|
| 307 |
|
|
txt += ' exitstring=`lcg-cp --vo $VO -t 2400 file://\`pwd\`/$out_file gsiftp://${SE}${SE_PATH}$out_file 2>&1`\n'
|
| 308 |
gutsche |
1.1 |
txt += ' copy_exit_status=$?\n'
|
| 309 |
gutsche |
1.9 |
txt += ' echo "COPY_EXIT_STATUS for lcg-cp = $copy_exit_status"\n'
|
| 310 |
gutsche |
1.1 |
txt += ' echo "STAGE_OUT = $copy_exit_status"\n'
|
| 311 |
|
|
txt += ' if [ $copy_exit_status -ne 0 ]; then\n'
|
| 312 |
gutsche |
1.9 |
txt += ' echo "Possible problem with SE = $SE"\n'
|
| 313 |
gutsche |
1.1 |
txt += ' echo "StageOutExitStatus = 198" | tee -a $RUNTIME_AREA/$repo\n'
|
| 314 |
|
|
txt += ' echo "StageOutExitStatusReason = $exitstring" | tee -a $RUNTIME_AREA/$repo\n'
|
| 315 |
mkirn |
1.13 |
txt += ' echo "lcg-cp failed. For verbose lcg-cp output, use command line option -debug 5."\n'
|
| 316 |
gutsche |
1.9 |
txt += ' echo "lcg-cp failed, attempting srmcp"\n'
|
| 317 |
|
|
txt += ' echo "mkdir -p $HOME/.srmconfig"\n'
|
| 318 |
|
|
txt += ' mkdir -p $HOME/.srmconfig\n'
|
| 319 |
mkirn |
1.10 |
txt += ' echo "srmcp -retry_num 5 -retry_timeout 480000 -x509_user_trusted_certificates $OSG_APP/glite/etc/grid-security/certificates file:////`pwd`/$out_file srm://${SE}:8443${SE_PATH}$out_file"\n'
|
| 320 |
|
|
txt += ' exitstring=`srmcp -retry_num 5 -retry_timeout 480000 -x509_user_trusted_certificates $OSG_APP/glite/etc/grid-security/certificates file:////\`pwd\`/$out_file srm://${SE}:8443${SE_PATH}$out_file 2>&1`\n'
|
| 321 |
gutsche |
1.9 |
txt += ' copy_exit_status=$?\n'
|
| 322 |
|
|
txt += ' echo "COPY_EXIT_STATUS for srm = $copy_exit_status"\n'
|
| 323 |
|
|
txt += ' echo "STAGE_OUT = $copy_exit_status"\n'
|
| 324 |
|
|
txt += ' if [ $copy_exit_status -ne 0 ]; then\n'
|
| 325 |
|
|
txt += ' echo "Problems with SE = $SE"\n'
|
| 326 |
|
|
txt += ' echo "StageOutExitStatus = 198" | tee -a $RUNTIME_AREA/$repo\n'
|
| 327 |
|
|
txt += ' echo "StageOutExitStatusReason = $exitstring" | tee -a $RUNTIME_AREA/$repo\n'
|
| 328 |
|
|
txt += ' echo "lcg-cp and srmcp failed"\n'
|
| 329 |
|
|
txt += ' echo "If storage_path in your config file contains a ? you may need a \? instead."\n'
|
| 330 |
|
|
txt += ' else\n'
|
| 331 |
|
|
txt += ' echo "StageOutSE = $SE" | tee -a $RUNTIME_AREA/$repo\n'
|
| 332 |
|
|
txt += ' echo "StageOutCatalog = " | tee -a $RUNTIME_AREA/$repo\n'
|
| 333 |
|
|
txt += ' echo "output copied into $SE/$SE_PATH directory"\n'
|
| 334 |
|
|
txt += ' echo "StageOutExitStatus = 0" | tee -a $RUNTIME_AREA/$repo\n'
|
| 335 |
|
|
txt += ' echo "srmcp succeeded"\n'
|
| 336 |
|
|
txt += ' fi\n'
|
| 337 |
gutsche |
1.1 |
txt += ' else\n'
|
| 338 |
|
|
txt += ' echo "StageOutSE = $SE" | tee -a $RUNTIME_AREA/$repo\n'
|
| 339 |
|
|
txt += ' echo "StageOutCatalog = " | tee -a $RUNTIME_AREA/$repo\n'
|
| 340 |
|
|
txt += ' echo "output copied into $SE/$SE_PATH directory"\n'
|
| 341 |
|
|
txt += ' echo "StageOutExitStatus = 0" | tee -a $RUNTIME_AREA/$repo\n'
|
| 342 |
gutsche |
1.9 |
txt += ' echo "lcg-cp succeeded"\n'
|
| 343 |
gutsche |
1.1 |
txt += ' fi\n'
|
| 344 |
|
|
txt += ' done\n'
|
| 345 |
gutsche |
1.9 |
#txt += 'fi\n'
|
| 346 |
gutsche |
1.1 |
|
| 347 |
|
|
return txt
|
| 348 |
|
|
|
| 349 |
|
|
def wsRegisterOutput(self):
|
| 350 |
|
|
"""
|
| 351 |
|
|
Returns part of a job script which does scheduler-specific work.
|
| 352 |
|
|
"""
|
| 353 |
|
|
|
| 354 |
|
|
txt = ''
|
| 355 |
|
|
return txt
|
| 356 |
|
|
|
| 357 |
|
|
def loggingInfo(self, id):
|
| 358 |
|
|
"""
|
| 359 |
|
|
retrieve the logging info from logging and bookkeeping and return it
|
| 360 |
|
|
"""
|
| 361 |
|
|
self.checkProxy()
|
| 362 |
|
|
cmd = 'condor_q -l -analyze ' + id
|
| 363 |
|
|
cmd_out = os.popen(cmd)
|
| 364 |
|
|
return cmd_out
|
| 365 |
|
|
|
| 366 |
|
|
def listMatch(self, nj):
|
| 367 |
|
|
"""
|
| 368 |
|
|
Check the compatibility of available resources
|
| 369 |
|
|
"""
|
| 370 |
|
|
self.checkProxy()
|
| 371 |
|
|
return 1
|
| 372 |
|
|
|
| 373 |
|
|
def submit(self, nj):
|
| 374 |
|
|
"""
|
| 375 |
|
|
Submit one OSG job.
|
| 376 |
|
|
"""
|
| 377 |
|
|
self.checkProxy()
|
| 378 |
|
|
|
| 379 |
|
|
jid = None
|
| 380 |
|
|
jdl = common.job_list[nj].jdlFilename()
|
| 381 |
|
|
|
| 382 |
|
|
cmd = 'condor_submit ' + jdl
|
| 383 |
|
|
cmd_out = runCommand(cmd)
|
| 384 |
|
|
if cmd_out != None:
|
| 385 |
|
|
tmp = cmd_out.find('submitted to cluster') + 21
|
| 386 |
|
|
jid = cmd_out[tmp:].replace('.','')
|
| 387 |
|
|
jid = jid.replace('\n','')
|
| 388 |
|
|
pass
|
| 389 |
|
|
return jid
|
| 390 |
|
|
|
| 391 |
|
|
def resubmit(self, nj_list):
|
| 392 |
|
|
"""
|
| 393 |
|
|
Prepare jobs to be submit
|
| 394 |
|
|
"""
|
| 395 |
|
|
return
|
| 396 |
|
|
|
| 397 |
|
|
def getExitStatus(self, id):
|
| 398 |
|
|
return self.getStatusAttribute_(id, 'exit_code')
|
| 399 |
|
|
|
| 400 |
|
|
def queryStatus(self, id):
|
| 401 |
|
|
return self.getStatusAttribute_(id, 'status')
|
| 402 |
|
|
|
| 403 |
|
|
def queryDest(self, id):
|
| 404 |
|
|
return self.getStatusAttribute_(id, 'destination')
|
| 405 |
|
|
|
| 406 |
|
|
|
| 407 |
|
|
def getStatusAttribute_(self, id, attr):
|
| 408 |
|
|
""" Query a status of the job with id """
|
| 409 |
|
|
|
| 410 |
|
|
self.checkProxy()
|
| 411 |
|
|
result = ''
|
| 412 |
|
|
|
| 413 |
|
|
if ( attr == 'exit_code' ) :
|
| 414 |
|
|
for i in range(common.jobDB.nJobs()) :
|
| 415 |
|
|
if ( id == common.jobDB.jobId(i) ) :
|
| 416 |
|
|
jobnum_str = '%06d' % (int(i)+1)
|
| 417 |
|
|
opts = common.work_space.loadSavedOptions()
|
| 418 |
|
|
base = string.upper(opts['-jobtype'])
|
| 419 |
|
|
log_file = common.work_space.resDir() + base + '_' + jobnum_str + '.stdout'
|
| 420 |
|
|
logfile = open(log_file)
|
| 421 |
|
|
log_line = logfile.readline()
|
| 422 |
|
|
while log_line :
|
| 423 |
|
|
log_line = log_line.strip()
|
| 424 |
|
|
if log_line.startswith('JOB_EXIT_STATUS') :
|
| 425 |
|
|
log_line_split = log_line.split()
|
| 426 |
|
|
result = log_line_split[2]
|
| 427 |
|
|
pass
|
| 428 |
|
|
log_line = logfile.readline()
|
| 429 |
|
|
elif ( attr == 'status' ) :
|
| 430 |
|
|
user = os.environ['USER']
|
| 431 |
|
|
cmd = 'condor_q -submitter ' + user
|
| 432 |
|
|
cmd_out = runCommand(cmd)
|
| 433 |
|
|
if cmd_out != None:
|
| 434 |
|
|
for line in cmd_out.splitlines() :
|
| 435 |
|
|
if line.strip().startswith(id.strip()) :
|
| 436 |
|
|
status = line.strip().split()[5]
|
| 437 |
|
|
if ( status == 'I' ):
|
| 438 |
|
|
result = 'Scheduled'
|
| 439 |
|
|
break
|
| 440 |
|
|
elif ( status == 'U' ) :
|
| 441 |
|
|
result = 'Ready'
|
| 442 |
|
|
break
|
| 443 |
|
|
elif ( status == 'H' ) :
|
| 444 |
|
|
result = 'Hold'
|
| 445 |
|
|
break
|
| 446 |
|
|
elif ( status == 'R' ) :
|
| 447 |
|
|
result = 'Running'
|
| 448 |
|
|
break
|
| 449 |
|
|
elif ( status == 'X' ) :
|
| 450 |
|
|
result = 'Cancelled'
|
| 451 |
|
|
break
|
| 452 |
|
|
elif ( status == 'C' ) :
|
| 453 |
|
|
result = 'Done'
|
| 454 |
|
|
break
|
| 455 |
|
|
else :
|
| 456 |
|
|
result = 'Done'
|
| 457 |
|
|
break
|
| 458 |
|
|
else :
|
| 459 |
|
|
result = 'Done'
|
| 460 |
|
|
else :
|
| 461 |
|
|
result = 'Done'
|
| 462 |
|
|
elif ( attr == 'destination' ) :
|
| 463 |
|
|
for i in range(common.jobDB.nJobs()) :
|
| 464 |
|
|
if ( id == common.jobDB.jobId(i) ) :
|
| 465 |
|
|
jobnum_str = '%06d' % (int(i)+1)
|
| 466 |
|
|
opts = common.work_space.loadSavedOptions()
|
| 467 |
|
|
base = string.upper(opts['-jobtype'])
|
| 468 |
|
|
log_file = common.work_space.resDir() + base + '_' + jobnum_str + '.stdout'
|
| 469 |
|
|
logfile = open(log_file)
|
| 470 |
|
|
log_line = logfile.readline()
|
| 471 |
|
|
while log_line :
|
| 472 |
|
|
log_line = log_line.strip()
|
| 473 |
|
|
if log_line.startswith('GridJobId') :
|
| 474 |
|
|
log_line_split = log_line.split()
|
| 475 |
|
|
result = os.path.split(log_line_split[2])[0]
|
| 476 |
|
|
pass
|
| 477 |
|
|
log_line = logfile.readline()
|
| 478 |
|
|
elif ( attr == 'reason' ) :
|
| 479 |
|
|
result = 'status query'
|
| 480 |
|
|
elif ( attr == 'stateEnterTime' ) :
|
| 481 |
|
|
result = time.asctime(time.gmtime())
|
| 482 |
|
|
return result
|
| 483 |
|
|
|
| 484 |
|
|
def queryDetailedStatus(self, id):
|
| 485 |
|
|
""" Query a detailed status of the job with id """
|
| 486 |
|
|
user = os.environ['USER']
|
| 487 |
|
|
cmd = 'condor_q -submitter ' + user
|
| 488 |
|
|
cmd_out = runCommand(cmd)
|
| 489 |
|
|
return cmd_out
|
| 490 |
|
|
|
| 491 |
|
|
def getOutput(self, id):
|
| 492 |
|
|
"""
|
| 493 |
|
|
Get output for a finished job with id.
|
| 494 |
|
|
Returns the name of directory with results.
|
| 495 |
|
|
not needed for condor-g
|
| 496 |
|
|
"""
|
| 497 |
|
|
self.checkProxy()
|
| 498 |
|
|
return ''
|
| 499 |
|
|
|
| 500 |
|
|
def cancel(self, id):
|
| 501 |
|
|
""" Cancel the condor job with id """
|
| 502 |
|
|
self.checkProxy()
|
| 503 |
|
|
# query for schedd
|
| 504 |
|
|
user = os.environ['USER']
|
| 505 |
|
|
cmd = 'condor_q -submitter ' + user
|
| 506 |
|
|
cmd_out = runCommand(cmd)
|
| 507 |
|
|
schedd=''
|
| 508 |
|
|
if cmd_out != None:
|
| 509 |
|
|
for line in cmd_out.splitlines() :
|
| 510 |
|
|
if line.strip().startswith('--') :
|
| 511 |
|
|
schedd = line.strip().split()[6]
|
| 512 |
|
|
if line.strip().startswith(id.strip()) :
|
| 513 |
|
|
status = line.strip().split()[5]
|
| 514 |
|
|
break
|
| 515 |
|
|
cmd = 'condor_rm -name ' + schedd + ' ' + id
|
| 516 |
|
|
cmd_out = runCommand(cmd)
|
| 517 |
|
|
return cmd_out
|
| 518 |
|
|
|
| 519 |
|
|
def createSchScript(self, nj):
|
| 520 |
|
|
"""
|
| 521 |
|
|
Create a JDL-file for condor
|
| 522 |
|
|
"""
|
| 523 |
|
|
|
| 524 |
|
|
job = common.job_list[nj]
|
| 525 |
|
|
jbt = job.type()
|
| 526 |
|
|
inp_sandbox = jbt.inputSandbox(nj)
|
| 527 |
|
|
out_sandbox = jbt.outputSandbox(nj)
|
| 528 |
|
|
|
| 529 |
|
|
# write EDG style JDL if UseBoss == 1
|
| 530 |
|
|
|
| 531 |
|
|
if self.UseBoss == '1' :
|
| 532 |
|
|
|
| 533 |
|
|
title = '# This JDL was generated by '+\
|
| 534 |
|
|
common.prog_name+' (version '+common.prog_version_str+')\n'
|
| 535 |
|
|
|
| 536 |
|
|
jdl_fname = job.jdlFilename()
|
| 537 |
|
|
jdl = open(jdl_fname, 'w')
|
| 538 |
|
|
jdl.write(title)
|
| 539 |
|
|
|
| 540 |
|
|
jdl.write('universe = "globus";\n')
|
| 541 |
|
|
|
| 542 |
|
|
# use gridcat to query site
|
| 543 |
|
|
gridcat_service_url = "http://osg-cat.grid.iu.edu/services.php"
|
| 544 |
|
|
hostSvc = ''
|
| 545 |
|
|
try:
|
| 546 |
|
|
hostSvc = GridCatHostService(gridcat_service_url,common.analisys_common_info['sites'][0])
|
| 547 |
|
|
except StandardError, ex:
|
| 548 |
|
|
gridcat_service_url = "http://osg-itb.ivdgl.org/gridcat/services.php"
|
| 549 |
|
|
try:
|
| 550 |
|
|
hostSvc = GridCatHostService(gridcat_service_url,common.analisys_common_info['sites'][0])
|
| 551 |
|
|
except StandardError, ex:
|
| 552 |
|
|
print '[Condor-G Scheduler]: selected site: ',common.analisys_common_info['sites'][0],' is not an OSG site!\n'
|
| 553 |
|
|
print '[Condor-G Scheduler]: Direct Condor-G submission to LCG sites is not possible!\n'
|
| 554 |
|
|
sys.exit(1)
|
| 555 |
|
|
|
| 556 |
|
|
batchsystem = hostSvc.batchSystem()
|
| 557 |
|
|
if batchsystem <> '' : batchsystem='-'+batchsystem
|
| 558 |
|
|
jdl_globusscheduler = 'globusscheduler = "' + common.analisys_common_info['sites'][0] + '/jobmanager' + batchsystem + '";\n'
|
| 559 |
|
|
jdl.write(jdl_globusscheduler)
|
| 560 |
|
|
if ( self.EDG_clock_time != '' ) :
|
| 561 |
|
|
jdl.write('globusrsl = "(maxWalltime='+self.EDG_clock_time+')";\n')
|
| 562 |
|
|
|
| 563 |
|
|
jdl.write('ENABLE_GRID_MONITOR = "TRUE";\n')
|
| 564 |
|
|
|
| 565 |
|
|
script = job.scriptFilename()
|
| 566 |
|
|
jdl.write('Executable = "' + os.path.basename(script) + '";\n')
|
| 567 |
|
|
|
| 568 |
|
|
jdl.write('should_transfer_files = "YES";\n')
|
| 569 |
|
|
jdl.write('when_to_transfer_output = "ON_EXIT";\n')
|
| 570 |
|
|
|
| 571 |
|
|
inp_box = 'InputSandbox = { '
|
| 572 |
|
|
inp_box = inp_box + '"' + script + '" ,'
|
| 573 |
|
|
|
| 574 |
|
|
if inp_sandbox != None:
|
| 575 |
|
|
for fl in inp_sandbox:
|
| 576 |
|
|
inp_box = inp_box + '"' + fl + '" ,'
|
| 577 |
|
|
pass
|
| 578 |
|
|
pass
|
| 579 |
|
|
|
| 580 |
|
|
for addFile in jbt.additional_inbox_files:
|
| 581 |
|
|
addFile = os.path.abspath(addFile)
|
| 582 |
|
|
inp_box = inp_box + '"' + addFile + '" ,'
|
| 583 |
|
|
pass
|
| 584 |
|
|
|
| 585 |
|
|
inp_box = inp_box+' "' + os.path.abspath(os.environ['CRABDIR']+'/python/'+'report.py') + '", "' +\
|
| 586 |
gutsche |
1.3 |
os.path.abspath(os.environ['CRABDIR']+'/python/'+'DashboardAPI.py') + '", "'+\
|
| 587 |
gutsche |
1.1 |
os.path.abspath(os.environ['CRABDIR']+'/python/'+'Logger.py') + '", "'+\
|
| 588 |
|
|
os.path.abspath(os.environ['CRABDIR']+'/python/'+'ProcInfo.py') + '", "'+\
|
| 589 |
|
|
os.path.abspath(os.environ['CRABDIR']+'/python/'+'apmon.py') + '"'
|
| 590 |
|
|
|
| 591 |
|
|
if inp_box[-1] == ',' : inp_box = inp_box[:-1]
|
| 592 |
|
|
inp_box = inp_box + ' };\n'
|
| 593 |
|
|
jdl.write(inp_box)
|
| 594 |
|
|
|
| 595 |
|
|
out_box = 'OutputSandbox = { '
|
| 596 |
|
|
out_box = out_box + '"' + job.stdout() + '" ,'
|
| 597 |
|
|
out_box = out_box + '"' + job.stderr() + '" ,'
|
| 598 |
|
|
|
| 599 |
|
|
if int(self.return_data) == 1:
|
| 600 |
|
|
if out_sandbox != None:
|
| 601 |
|
|
for fl in out_sandbox:
|
| 602 |
|
|
out_box = out_box + '"' + fl + '" ,'
|
| 603 |
|
|
pass
|
| 604 |
|
|
pass
|
| 605 |
|
|
pass
|
| 606 |
|
|
|
| 607 |
|
|
if out_box[-1] == ',' : out_box = out_box[:-1]
|
| 608 |
|
|
out_box = out_box + ' };\n'
|
| 609 |
|
|
jdl.write(out_box)
|
| 610 |
|
|
|
| 611 |
gutsche |
1.4 |
#firstEvent = common.jobDB.firstEvent(nj)
|
| 612 |
|
|
#maxEvents = common.jobDB.maxEvents(nj)
|
| 613 |
|
|
jdl.write('Arguments = "' + str(nj+1)+' '+jbt.getJobTypeArguments(nj, "CONDOR") + '";\n')
|
| 614 |
gutsche |
1.1 |
|
| 615 |
|
|
jdl.write('StdOutput = "' + job.stdout() + '";\n')
|
| 616 |
|
|
jdl.write('stream_output = "false";\n')
|
| 617 |
|
|
jdl.write('StdError = "' + job.stderr() + '";\n')
|
| 618 |
|
|
jdl.write('stream_error = "false";\n')
|
| 619 |
|
|
logentry = 'Log = "' + job.stderr() + '";\n'
|
| 620 |
|
|
logentry = logentry.replace('stderr','log')
|
| 621 |
|
|
jdl.write(logentry)
|
| 622 |
|
|
jdl.write('notification="never";\n')
|
| 623 |
|
|
jdl.write('QUEUE = "1";\n')
|
| 624 |
|
|
jdl.close()
|
| 625 |
|
|
|
| 626 |
|
|
else :
|
| 627 |
|
|
|
| 628 |
|
|
title = '# This JDL was generated by '+\
|
| 629 |
|
|
common.prog_name+' (version '+common.prog_version_str+')\n'
|
| 630 |
|
|
|
| 631 |
|
|
jdl_fname = job.jdlFilename()
|
| 632 |
|
|
jdl = open(jdl_fname, 'w')
|
| 633 |
|
|
jdl.write(title)
|
| 634 |
|
|
|
| 635 |
|
|
|
| 636 |
|
|
# use gridcat to query site
|
| 637 |
|
|
gridcat_service_url = "http://osg-cat.grid.iu.edu/services.php"
|
| 638 |
|
|
hostSvc = ''
|
| 639 |
|
|
try:
|
| 640 |
|
|
hostSvc = GridCatHostService(gridcat_service_url,common.analisys_common_info['sites'][0])
|
| 641 |
|
|
except StandardError, ex:
|
| 642 |
|
|
gridcat_service_url = "http://osg-itb.ivdgl.org/gridcat/services.php"
|
| 643 |
|
|
try:
|
| 644 |
|
|
hostSvc = GridCatHostService(gridcat_service_url,common.analisys_common_info['sites'][0])
|
| 645 |
|
|
except StandardError, ex:
|
| 646 |
|
|
print '[Condor-G Scheduler]: selected site: ',common.analisys_common_info['sites'][0],' is not an OSG site!\n'
|
| 647 |
|
|
print '[Condor-G Scheduler]: Direct Condor-G submission to LCG sites is not possible!\n'
|
| 648 |
|
|
sys.exit(1)
|
| 649 |
|
|
|
| 650 |
|
|
batchsystem = hostSvc.batchSystem()
|
| 651 |
|
|
|
| 652 |
|
|
if self.UseGT4 == '1' :
|
| 653 |
|
|
|
| 654 |
|
|
jdl.write('universe = grid\n')
|
| 655 |
|
|
jdl.write('grid_type = gt4\n')
|
| 656 |
|
|
jdl_globusscheduler = 'globusscheduler = ' + common.analisys_common_info['sites'][0] + '\n'
|
| 657 |
|
|
jdl.write(jdl_globusscheduler)
|
| 658 |
|
|
jdl_jobmanager = 'jobmanager_type = ' + batchsystem + '\n'
|
| 659 |
|
|
jdl.write(jdl_jobmanager)
|
| 660 |
|
|
if ( self.EDG_clock_time != '' ) :
|
| 661 |
|
|
jdl.write('globusrsl = (maxWalltime='+self.EDG_clock_time+')\n')
|
| 662 |
|
|
|
| 663 |
|
|
else :
|
| 664 |
|
|
|
| 665 |
|
|
if batchsystem <> '' : batchsystem='-'+batchsystem
|
| 666 |
|
|
jdl.write('universe = globus\n')
|
| 667 |
|
|
jdl_globusscheduler = 'globusscheduler = ' + common.analisys_common_info['sites'][0] + '/jobmanager' + batchsystem + '\n'
|
| 668 |
|
|
jdl.write(jdl_globusscheduler)
|
| 669 |
|
|
if ( self.EDG_clock_time != '' ) :
|
| 670 |
|
|
jdl.write('globusrsl = (maxWalltime='+self.EDG_clock_time+')\n')
|
| 671 |
|
|
|
| 672 |
|
|
jdl.write('ENABLE_GRID_MONITOR = TRUE\n')
|
| 673 |
|
|
|
| 674 |
|
|
script = job.scriptFilename()
|
| 675 |
|
|
jdl.write('Executable = ' + common.work_space.jobDir() + '/' + os.path.basename(script) + '\n')
|
| 676 |
|
|
|
| 677 |
|
|
jdl.write('should_transfer_files = YES\n')
|
| 678 |
|
|
jdl.write('when_to_transfer_output = ON_EXIT\n')
|
| 679 |
|
|
|
| 680 |
|
|
inp_box = 'transfer_input_files ='
|
| 681 |
|
|
inp_box = inp_box + script + ','
|
| 682 |
|
|
|
| 683 |
|
|
if inp_sandbox != None:
|
| 684 |
|
|
for fl in inp_sandbox:
|
| 685 |
|
|
inp_box = inp_box + fl + ','
|
| 686 |
|
|
pass
|
| 687 |
|
|
pass
|
| 688 |
|
|
|
| 689 |
|
|
for addFile in jbt.additional_inbox_files:
|
| 690 |
|
|
addFile = os.path.abspath(addFile)
|
| 691 |
|
|
inp_box = inp_box + addFile + ','
|
| 692 |
|
|
pass
|
| 693 |
|
|
|
| 694 |
|
|
inp_box = inp_box+ os.path.abspath(os.environ['CRABDIR']+'/python/'+'report.py') + ',' +\
|
| 695 |
|
|
os.path.abspath(os.environ['CRABDIR']+'/python/'+'Logger.py') + ','+\
|
| 696 |
|
|
os.path.abspath(os.environ['CRABDIR']+'/python/'+'ProcInfo.py') + ','+\
|
| 697 |
|
|
os.path.abspath(os.environ['CRABDIR']+'/python/'+'apmon.py')
|
| 698 |
|
|
|
| 699 |
|
|
if inp_box[-1] == ',' : inp_box = inp_box[:-1]
|
| 700 |
|
|
inp_box = inp_box + '\n'
|
| 701 |
|
|
jdl.write(inp_box)
|
| 702 |
|
|
|
| 703 |
|
|
out_box = 'transfer_output_files = '
|
| 704 |
|
|
|
| 705 |
|
|
if int(self.return_data) == 1:
|
| 706 |
|
|
if out_sandbox != None:
|
| 707 |
|
|
for fl in out_sandbox:
|
| 708 |
|
|
out_box = out_box + common.work_space.resDir() + '/' + fl + ','
|
| 709 |
|
|
pass
|
| 710 |
|
|
pass
|
| 711 |
|
|
pass
|
| 712 |
|
|
|
| 713 |
|
|
if out_box[-1] == ',' : out_box = out_box[:-1]
|
| 714 |
|
|
out_box = out_box + '\n'
|
| 715 |
|
|
jdl.write(out_box)
|
| 716 |
|
|
|
| 717 |
|
|
firstEvent = common.jobDB.firstEvent(nj)
|
| 718 |
|
|
maxEvents = common.jobDB.maxEvents(nj)
|
| 719 |
|
|
jdl.write('Arguments = ' + str(nj+1)+' '+str(firstEvent)+' '+str(maxEvents)+' '+common.analisys_common_info['sites'][0]+'\n')
|
| 720 |
|
|
# arguments for Boss
|
| 721 |
|
|
jdl.write('Output = ' + common.work_space.resDir() + '/' + job.stdout() + '\n')
|
| 722 |
|
|
jdl.write('stream_output = false\n')
|
| 723 |
|
|
jdl.write('Error = ' + common.work_space.resDir() + '/' + job.stderr() + '\n')
|
| 724 |
|
|
jdl.write('stream_error = false\n')
|
| 725 |
|
|
logentry = 'Log = ' + common.work_space.resDir() + '/' + job.stderr() + '\n'
|
| 726 |
|
|
logentry = logentry.replace('stderr','log')
|
| 727 |
|
|
jdl.write(logentry)
|
| 728 |
|
|
jdl.write('notification=never\n')
|
| 729 |
|
|
jdl.write('QUEUE 1\n')
|
| 730 |
|
|
jdl.close()
|
| 731 |
|
|
return
|
| 732 |
|
|
|
| 733 |
|
|
def checkProxy(self):
|
| 734 |
|
|
"""
|
| 735 |
|
|
Function to check the Globus proxy.
|
| 736 |
|
|
"""
|
| 737 |
|
|
if (self.proxyValid): return
|
| 738 |
|
|
timeleft = -999
|
| 739 |
|
|
minTimeLeft=10 # in hours
|
| 740 |
|
|
cmd = 'voms-proxy-info -exists -valid '+str(minTimeLeft)+':00'
|
| 741 |
|
|
# SL Here I have to use os.system since the stupid command exit with >0 if no valid proxy is found
|
| 742 |
|
|
cmd_out = os.system(cmd)
|
| 743 |
|
|
if (cmd_out>0):
|
| 744 |
gutsche |
1.5 |
common.logger.message( "No valid proxy found or remaining time of validity of already existing proxy shorter than 10 hours!\n Creating a user proxy with default length of 96h\n")
|
| 745 |
|
|
cmd = 'voms-proxy-init -voms cms -valid 96:00'
|
| 746 |
gutsche |
1.1 |
try:
|
| 747 |
|
|
# SL as above: damn it!
|
| 748 |
|
|
out = os.system(cmd)
|
| 749 |
|
|
if (out>0): raise CrabException("Unable to create a valid proxy!\n")
|
| 750 |
|
|
except:
|
| 751 |
|
|
msg = "Unable to create a valid proxy!\n"
|
| 752 |
|
|
raise CrabException(msg)
|
| 753 |
|
|
# cmd = 'grid-proxy-info -timeleft'
|
| 754 |
|
|
# cmd_out = runCommand(cmd,0,20)
|
| 755 |
|
|
pass
|
| 756 |
|
|
self.proxyValid=1
|
| 757 |
|
|
return
|
