| 1 |
nsmirnov |
1.1 |
from Scheduler import Scheduler
|
| 2 |
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from crab_logger import Logger
|
| 3 |
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from crab_exceptions import *
|
| 4 |
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from crab_util import *
|
| 5 |
slacapra |
1.50 |
from EdgConfig import *
|
| 6 |
nsmirnov |
1.1 |
import common
|
| 7 |
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|
| 8 |
slacapra |
1.18 |
import os, sys, time
|
| 9 |
nsmirnov |
1.1 |
|
| 10 |
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class SchedulerEdg(Scheduler):
|
| 11 |
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def __init__(self):
|
| 12 |
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Scheduler.__init__(self,"EDG")
|
| 13 |
slacapra |
1.8 |
self.states = [ "Acl", "cancelReason", "cancelling","ce_node","children", \
|
| 14 |
|
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"children_hist","children_num","children_states","condorId","condor_jdl", \
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| 15 |
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"cpuTime","destination", "done_code","exit_code","expectFrom", \
|
| 16 |
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"expectUpdate","globusId","jdl","jobId","jobtype", \
|
| 17 |
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"lastUpdateTime","localId","location", "matched_jdl","network_server", \
|
| 18 |
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"owner","parent_job", "reason","resubmitted","rsl","seed",\
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| 19 |
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"stateEnterTime","stateEnterTimes","subjob_failed", \
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| 20 |
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"user tags" , "status" , "status_code","hierarchy"]
|
| 21 |
nsmirnov |
1.1 |
return
|
| 22 |
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| 23 |
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def configure(self, cfg_params):
|
| 24 |
spiga |
1.49 |
|
| 25 |
slacapra |
1.46 |
try:
|
| 26 |
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RB = cfg_params["EDG.rb"]
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| 27 |
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edgConfig = EdgConfig(RB)
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| 28 |
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self.edg_config = edgConfig.config()
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| 29 |
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self.edg_config_vo = edgConfig.configVO()
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| 30 |
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except KeyError:
|
| 31 |
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self.edg_config = ''
|
| 32 |
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self.edg_config_vo = ''
|
| 33 |
nsmirnov |
1.1 |
|
| 34 |
slacapra |
1.51 |
try:
|
| 35 |
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self.proxyServer = cfg_params["EDG.proxy_server"]
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| 36 |
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except KeyError:
|
| 37 |
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self.proxyServer = 'myproxy.cern.ch'
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| 38 |
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common.logger.debug(5,'Setting myproxy server to '+self.proxyServer)
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| 39 |
spiga |
1.49 |
|
| 40 |
slacapra |
1.79 |
try:
|
| 41 |
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self.role = cfg_params["EDG.rb"]
|
| 42 |
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except KeyError:
|
| 43 |
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self.role = None
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| 44 |
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| 45 |
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try:
|
| 46 |
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self.role = cfg_params["EDG.role"]
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| 47 |
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except KeyError:
|
| 48 |
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self.role = None
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| 49 |
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|
| 50 |
nsmirnov |
1.1 |
try: self.LCG_version = cfg_params["EDG.lcg_version"]
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| 51 |
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except KeyError: self.LCG_version = '2'
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| 52 |
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|
| 53 |
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try: self.EDG_requirements = cfg_params['EDG.requirements']
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| 54 |
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except KeyError: self.EDG_requirements = ''
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| 55 |
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| 56 |
spiga |
1.49 |
try: self.EDG_retry_count = cfg_params['EDG.retry_count']
|
| 57 |
nsmirnov |
1.1 |
except KeyError: self.EDG_retry_count = ''
|
| 58 |
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|
| 59 |
fanzago |
1.48 |
try:
|
| 60 |
|
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self.EDG_ce_black_list = cfg_params['EDG.ce_black_list']
|
| 61 |
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#print "self.EDG_ce_black_list = ", self.EDG_ce_black_list
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| 62 |
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except KeyError:
|
| 63 |
|
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self.EDG_ce_black_list = ''
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| 64 |
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|
| 65 |
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try:
|
| 66 |
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self.EDG_ce_white_list = cfg_params['EDG.ce_white_list']
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| 67 |
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#print "self.EDG_ce_white_list = ", self.EDG_ce_white_list
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| 68 |
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except KeyError: self.EDG_ce_white_list = ''
|
| 69 |
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|
| 70 |
fanzago |
1.14 |
try: self.VO = cfg_params['EDG.virtual_organization']
|
| 71 |
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except KeyError: self.VO = 'cms'
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| 72 |
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| 73 |
spiga |
1.49 |
try: self.return_data = cfg_params['USER.return_data']
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| 74 |
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except KeyError: self.return_data = 1
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| 75 |
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|
| 76 |
fanzago |
1.39 |
try:
|
| 77 |
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self.copy_input_data = common.analisys_common_info['copy_input_data']
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| 78 |
fanzago |
1.41 |
#print "self.copy_input_data = ", self.copy_input_data
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| 79 |
fanzago |
1.39 |
except KeyError: self.copy_input_data = 0
|
| 80 |
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|
| 81 |
fanzago |
1.14 |
try:
|
| 82 |
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self.copy_data = cfg_params["USER.copy_data"]
|
| 83 |
fanzago |
1.30 |
if int(self.copy_data) == 1:
|
| 84 |
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try:
|
| 85 |
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self.SE = cfg_params['USER.storage_element']
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| 86 |
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self.SE_PATH = cfg_params['USER.storage_path']
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| 87 |
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except KeyError:
|
| 88 |
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msg = "Error. The [USER] section does not have 'storage_element'"
|
| 89 |
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msg = msg + " and/or 'storage_path' entries, necessary to copy the output"
|
| 90 |
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common.logger.message(msg)
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| 91 |
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raise CrabException(msg)
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| 92 |
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except KeyError: self.copy_data = 0
|
| 93 |
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|
| 94 |
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if ( int(self.return_data) == 0 and int(self.copy_data) == 0 ):
|
| 95 |
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msg = 'Warning: return_data = 0 and copy_data = 0 ==> your exe output will be lost\n'
|
| 96 |
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msg = msg + 'Please modify return_data and copy_data value in your crab.cfg file\n'
|
| 97 |
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raise CrabException(msg)
|
| 98 |
fanzago |
1.38 |
|
| 99 |
|
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try:
|
| 100 |
|
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self.lfc_host = cfg_params['EDG.lfc_host']
|
| 101 |
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except KeyError:
|
| 102 |
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msg = "Error. The [EDG] section does not have 'lfc_host' value"
|
| 103 |
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msg = msg + " it's necessary to know the LFC host name"
|
| 104 |
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common.logger.message(msg)
|
| 105 |
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raise CrabException(msg)
|
| 106 |
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try:
|
| 107 |
|
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self.lcg_catalog_type = cfg_params['EDG.lcg_catalog_type']
|
| 108 |
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except KeyError:
|
| 109 |
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msg = "Error. The [EDG] section does not have 'lcg_catalog_type' value"
|
| 110 |
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msg = msg + " it's necessary to know the catalog type"
|
| 111 |
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common.logger.message(msg)
|
| 112 |
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raise CrabException(msg)
|
| 113 |
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try:
|
| 114 |
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self.lfc_home = cfg_params['EDG.lfc_home']
|
| 115 |
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except KeyError:
|
| 116 |
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msg = "Error. The [EDG] section does not have 'lfc_home' value"
|
| 117 |
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msg = msg + " it's necessary to know the home catalog dir"
|
| 118 |
|
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common.logger.message(msg)
|
| 119 |
|
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raise CrabException(msg)
|
| 120 |
fanzago |
1.30 |
|
| 121 |
fanzago |
1.14 |
try:
|
| 122 |
|
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self.register_data = cfg_params["USER.register_data"]
|
| 123 |
fanzago |
1.30 |
if int(self.register_data) == 1:
|
| 124 |
|
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try:
|
| 125 |
|
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self.LFN = cfg_params['USER.lfn_dir']
|
| 126 |
|
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except KeyError:
|
| 127 |
|
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msg = "Error. The [USER] section does not have 'lfn_dir' value"
|
| 128 |
fanzago |
1.36 |
msg = msg + " it's necessary for LCF registration"
|
| 129 |
fanzago |
1.30 |
common.logger.message(msg)
|
| 130 |
|
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raise CrabException(msg)
|
| 131 |
|
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except KeyError: self.register_data = 0
|
| 132 |
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|
| 133 |
|
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if ( int(self.copy_data) == 0 and int(self.register_data) == 1 ):
|
| 134 |
|
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msg = 'Warning: register_data = 1 must be used with copy_data = 1\n'
|
| 135 |
|
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msg = msg + 'Please modify copy_data value in your crab.cfg file\n'
|
| 136 |
|
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common.logger.message(msg)
|
| 137 |
|
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raise CrabException(msg)
|
| 138 |
fanzago |
1.14 |
|
| 139 |
|
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try: self.EDG_requirements = cfg_params['EDG.requirements']
|
| 140 |
|
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except KeyError: self.EDG_requirements = ''
|
| 141 |
|
|
|
| 142 |
|
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try: self.EDG_retry_count = cfg_params['EDG.retry_count']
|
| 143 |
|
|
except KeyError: self.EDG_retry_count = ''
|
| 144 |
|
|
|
| 145 |
|
|
try: self.EDG_clock_time = cfg_params['EDG.max_wall_clock_time']
|
| 146 |
|
|
except KeyError: self.EDG_clock_time= ''
|
| 147 |
|
|
|
| 148 |
|
|
try: self.EDG_cpu_time = cfg_params['EDG.max_cpu_time']
|
| 149 |
|
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except KeyError: self.EDG_cpu_time = ''
|
| 150 |
|
|
|
| 151 |
fanzago |
1.16 |
# Add EDG_WL_LOCATION to the python path
|
| 152 |
|
|
|
| 153 |
|
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try:
|
| 154 |
|
|
path = os.environ['EDG_WL_LOCATION']
|
| 155 |
|
|
except:
|
| 156 |
|
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msg = "Error: the EDG_WL_LOCATION variable is not set."
|
| 157 |
|
|
raise CrabException(msg)
|
| 158 |
|
|
|
| 159 |
|
|
libPath=os.path.join(path, "lib")
|
| 160 |
|
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sys.path.append(libPath)
|
| 161 |
|
|
libPath=os.path.join(path, "lib", "python")
|
| 162 |
|
|
sys.path.append(libPath)
|
| 163 |
nsmirnov |
1.1 |
|
| 164 |
slacapra |
1.18 |
self.proxyValid=0
|
| 165 |
gutsche |
1.60 |
|
| 166 |
slacapra |
1.61 |
try:
|
| 167 |
|
|
self._taskId = cfg_params['taskId']
|
| 168 |
|
|
except:
|
| 169 |
|
|
self._taskId = ''
|
| 170 |
gutsche |
1.60 |
|
| 171 |
nsmirnov |
1.1 |
return
|
| 172 |
|
|
|
| 173 |
fanzago |
1.10 |
|
| 174 |
|
|
def sched_parameter(self):
|
| 175 |
|
|
"""
|
| 176 |
|
|
Returns file with scheduler-specific parameters
|
| 177 |
|
|
"""
|
| 178 |
|
|
|
| 179 |
|
|
if (self.edg_config and self.edg_config_vo != ''):
|
| 180 |
|
|
self.param='sched_param.clad'
|
| 181 |
|
|
param_file = open(common.work_space.shareDir()+'/'+self.param, 'w')
|
| 182 |
|
|
param_file.write('RBconfig = "'+self.edg_config+'";\n')
|
| 183 |
|
|
param_file.write('RBconfigVO = "'+self.edg_config_vo+'";')
|
| 184 |
|
|
param_file.close()
|
| 185 |
|
|
return 1
|
| 186 |
|
|
else:
|
| 187 |
|
|
return 0
|
| 188 |
fanzago |
1.13 |
|
| 189 |
nsmirnov |
1.2 |
def wsSetupEnvironment(self):
|
| 190 |
|
|
"""
|
| 191 |
|
|
Returns part of a job script which does scheduler-specific work.
|
| 192 |
|
|
"""
|
| 193 |
spiga |
1.49 |
txt = ''
|
| 194 |
mkirn |
1.75 |
txt += '# strip arguments\n'
|
| 195 |
|
|
txt += 'echo "strip arguments"\n'
|
| 196 |
|
|
txt += 'args=("$@")\n'
|
| 197 |
|
|
txt += 'nargs=$#\n'
|
| 198 |
|
|
txt += 'shift $nargs\n'
|
| 199 |
gutsche |
1.60 |
txt += "# job number (first parameter for job wrapper)\n"
|
| 200 |
mkirn |
1.75 |
#txt += "NJob=$1\n"
|
| 201 |
|
|
txt += "NJob=${args[0]}\n"
|
| 202 |
gutsche |
1.60 |
|
| 203 |
|
|
txt += '# job identification to DashBoard \n'
|
| 204 |
gutsche |
1.64 |
txt += 'MonitorJobID=`echo ${NJob}_$EDG_WL_JOBID`\n'
|
| 205 |
|
|
txt += 'SyncGridJobId=`echo $EDG_WL_JOBID`\n'
|
| 206 |
|
|
txt += 'MonitorID=`echo ' + self._taskId + '`\n'
|
| 207 |
|
|
txt += 'echo "MonitorJobID=`echo $MonitorJobID`" | tee -a $RUNTIME_AREA/$repo \n'
|
| 208 |
|
|
txt += 'echo "SyncGridJobId=`echo $SyncGridJobId`" | tee -a $RUNTIME_AREA/$repo \n'
|
| 209 |
|
|
txt += 'echo "MonitorID=`echo $MonitorID`" | tee -a $RUNTIME_AREA/$repo\n'
|
| 210 |
gutsche |
1.60 |
|
| 211 |
spiga |
1.49 |
txt += 'echo "middleware discovery " \n'
|
| 212 |
gutsche |
1.60 |
txt += 'if [ $VO_CMS_SW_DIR ]; then \n'
|
| 213 |
spiga |
1.49 |
txt += ' middleware=LCG \n'
|
| 214 |
gutsche |
1.60 |
txt += ' echo "SyncCE=`edg-brokerinfo getCE`" | tee -a $RUNTIME_AREA/$repo \n'
|
| 215 |
|
|
txt += ' echo "GridFlavour=`echo $middleware`" | tee -a $RUNTIME_AREA/$repo \n'
|
| 216 |
spiga |
1.49 |
txt += ' echo "middleware =$middleware" \n'
|
| 217 |
|
|
txt += 'elif [ $GRID3_APP_DIR ]; then\n'
|
| 218 |
|
|
txt += ' middleware=OSG \n'
|
| 219 |
gutsche |
1.60 |
txt += ' echo "SyncCE=`echo $EDG_WL_LOG_DESTINATION`" | tee -a $RUNTIME_AREA/$repo \n'
|
| 220 |
|
|
txt += ' echo "GridFlavour=`echo $middleware`" | tee -a $RUNTIME_AREA/$repo \n'
|
| 221 |
spiga |
1.49 |
txt += ' echo "middleware =$middleware" \n'
|
| 222 |
|
|
txt += 'elif [ $OSG_APP ]; then \n'
|
| 223 |
|
|
txt += ' middleware=OSG \n'
|
| 224 |
gutsche |
1.60 |
txt += ' echo "SyncCE=`echo $EDG_WL_LOG_DESTINATION`" | tee -a $RUNTIME_AREA/$repo \n'
|
| 225 |
|
|
txt += ' echo "GridFlavour=`echo $middleware`" | tee -a $RUNTIME_AREA/$repo \n'
|
| 226 |
spiga |
1.49 |
txt += ' echo "middleware =$middleware" \n'
|
| 227 |
|
|
txt += 'else \n'
|
| 228 |
gutsche |
1.60 |
txt += ' echo "SET_CMS_ENV 10030 ==> middleware not identified" \n'
|
| 229 |
|
|
txt += ' echo "JOB_EXIT_STATUS = 10030" \n'
|
| 230 |
|
|
txt += ' echo "JobExitCode=10030" | tee -a $RUNTIME_AREA/$repo \n'
|
| 231 |
|
|
txt += ' dumpStatus $RUNTIME_AREA/$repo \n'
|
| 232 |
gutsche |
1.64 |
txt += ' rm -f $RUNTIME_AREA/$repo \n'
|
| 233 |
|
|
txt += ' echo "MonitorJobID=`echo $MonitorJobID`" | tee -a $RUNTIME_AREA/$repo \n'
|
| 234 |
|
|
txt += ' echo "MonitorID=`echo $MonitorID`" | tee -a $RUNTIME_AREA/$repo\n'
|
| 235 |
gutsche |
1.60 |
txt += ' exit 1 \n'
|
| 236 |
|
|
txt += 'fi \n'
|
| 237 |
|
|
|
| 238 |
|
|
txt += '# report first time to DashBoard \n'
|
| 239 |
|
|
txt += 'dumpStatus $RUNTIME_AREA/$repo \n'
|
| 240 |
gutsche |
1.64 |
txt += 'rm -f $RUNTIME_AREA/$repo \n'
|
| 241 |
|
|
txt += 'echo "MonitorJobID=`echo $MonitorJobID`" | tee -a $RUNTIME_AREA/$repo \n'
|
| 242 |
|
|
txt += 'echo "MonitorID=`echo $MonitorID`" | tee -a $RUNTIME_AREA/$repo\n'
|
| 243 |
|
|
|
| 244 |
spiga |
1.49 |
txt += '\n\n'
|
| 245 |
|
|
|
| 246 |
fanzago |
1.30 |
if int(self.copy_data) == 1:
|
| 247 |
fanzago |
1.14 |
if self.SE:
|
| 248 |
|
|
txt += 'export SE='+self.SE+'\n'
|
| 249 |
fanzago |
1.15 |
txt += 'echo "SE = $SE"\n'
|
| 250 |
fanzago |
1.14 |
if self.SE_PATH:
|
| 251 |
|
|
if ( self.SE_PATH[-1] != '/' ) : self.SE_PATH = self.SE_PATH + '/'
|
| 252 |
|
|
txt += 'export SE_PATH='+self.SE_PATH+'\n'
|
| 253 |
fanzago |
1.15 |
txt += 'echo "SE_PATH = $SE_PATH"\n'
|
| 254 |
spiga |
1.49 |
|
| 255 |
fanzago |
1.38 |
txt += 'export VO='+self.VO+'\n'
|
| 256 |
|
|
### FEDE: add some line for LFC catalog setting
|
| 257 |
spiga |
1.49 |
txt += 'if [ $middleware == LCG ]; then \n'
|
| 258 |
|
|
txt += ' if [[ $LCG_CATALOG_TYPE != \''+self.lcg_catalog_type+'\' ]]; then\n'
|
| 259 |
|
|
txt += ' export LCG_CATALOG_TYPE='+self.lcg_catalog_type+'\n'
|
| 260 |
|
|
txt += ' fi\n'
|
| 261 |
|
|
txt += ' if [[ $LFC_HOST != \''+self.lfc_host+'\' ]]; then\n'
|
| 262 |
|
|
txt += ' export LFC_HOST='+self.lfc_host+'\n'
|
| 263 |
|
|
txt += ' fi\n'
|
| 264 |
|
|
txt += ' if [[ $LFC_HOME != \''+self.lfc_home+'\' ]]; then\n'
|
| 265 |
|
|
txt += ' export LFC_HOME='+self.lfc_home+'\n'
|
| 266 |
|
|
txt += ' fi\n'
|
| 267 |
|
|
txt += 'elif [ $middleware == OSG ]; then\n'
|
| 268 |
|
|
txt += ' echo "LFC catalog setting to be implemented for OSG"\n'
|
| 269 |
fanzago |
1.38 |
txt += 'fi\n'
|
| 270 |
|
|
#####
|
| 271 |
fanzago |
1.30 |
if int(self.register_data) == 1:
|
| 272 |
spiga |
1.49 |
txt += 'if [ $middleware == LCG ]; then \n'
|
| 273 |
|
|
txt += ' export LFN='+self.LFN+'\n'
|
| 274 |
|
|
txt += ' lfc-ls $LFN\n'
|
| 275 |
|
|
txt += ' result=$?\n'
|
| 276 |
|
|
txt += ' echo $result\n'
|
| 277 |
fanzago |
1.36 |
### creation of LFN dir in LFC catalog, under /grid/cms dir
|
| 278 |
spiga |
1.49 |
txt += ' if [ $result != 0 ]; then\n'
|
| 279 |
|
|
txt += ' lfc-mkdir $LFN\n'
|
| 280 |
|
|
txt += ' result=$?\n'
|
| 281 |
|
|
txt += ' echo $result\n'
|
| 282 |
|
|
txt += ' fi\n'
|
| 283 |
|
|
txt += 'elif [ $middleware == OSG ]; then\n'
|
| 284 |
|
|
txt += ' echo " Files registration to be implemented for OSG"\n'
|
| 285 |
fanzago |
1.36 |
txt += 'fi\n'
|
| 286 |
|
|
txt += '\n'
|
| 287 |
spiga |
1.49 |
|
| 288 |
|
|
if self.VO:
|
| 289 |
|
|
txt += 'export VO='+self.VO+'\n'
|
| 290 |
|
|
if self.LFN:
|
| 291 |
|
|
txt += 'if [ $middleware == LCG ]; then \n'
|
| 292 |
|
|
txt += ' export LFN='+self.LFN+'\n'
|
| 293 |
|
|
txt += 'fi\n'
|
| 294 |
|
|
txt += '\n'
|
| 295 |
|
|
|
| 296 |
|
|
txt += 'if [ $middleware == LCG ]; then\n'
|
| 297 |
|
|
txt += ' CloseCEs=`edg-brokerinfo getCE`\n'
|
| 298 |
|
|
txt += ' echo "CloseCEs = $CloseCEs"\n'
|
| 299 |
|
|
txt += ' CE=`echo $CloseCEs | sed -e "s/:.*//"`\n'
|
| 300 |
|
|
txt += ' echo "CE = $CE"\n'
|
| 301 |
|
|
txt += 'elif [ $middleware == OSG ]; then \n'
|
| 302 |
|
|
txt += ' if [ $OSG_JOB_CONTACT ]; then \n'
|
| 303 |
mkirn |
1.76 |
# txt += ' CE=`echo $OSG_JOB_CONTACT | /usr/bin/awk -F\/ \'{print $1}\'` \n'
|
| 304 |
|
|
txt += ' CE=`echo $OSG_JOB_CONTACT | /usr/bin/awk -F\/ \'{print ${args[0]}}\'` \n'
|
| 305 |
spiga |
1.49 |
txt += ' else \n'
|
| 306 |
gutsche |
1.60 |
txt += ' echo "SET_CMS_ENV 10099 ==> OSG mode: ERROR in setting CE name from OSG_JOB_CONTACT" \n'
|
| 307 |
|
|
txt += ' echo "JOB_EXIT_STATUS = 10099" \n'
|
| 308 |
|
|
txt += ' echo "JobExitCode=10099" | tee -a $RUNTIME_AREA/$repo \n'
|
| 309 |
|
|
txt += ' dumpStatus $RUNTIME_AREA/$repo \n'
|
| 310 |
gutsche |
1.64 |
txt += ' rm -f $RUNTIME_AREA/$repo \n'
|
| 311 |
|
|
txt += ' echo "MonitorJobID=`echo $MonitorJobID`" | tee -a $RUNTIME_AREA/$repo \n'
|
| 312 |
|
|
txt += ' echo "MonitorID=`echo $MonitorID`" | tee -a $RUNTIME_AREA/$repo\n'
|
| 313 |
spiga |
1.49 |
txt += ' exit 1 \n'
|
| 314 |
|
|
txt += ' fi \n'
|
| 315 |
|
|
txt += 'fi \n'
|
| 316 |
|
|
|
| 317 |
nsmirnov |
1.2 |
return txt
|
| 318 |
fanzago |
1.15 |
|
| 319 |
fanzago |
1.39 |
def wsCopyInput(self):
|
| 320 |
|
|
"""
|
| 321 |
|
|
Copy input data from SE to WN
|
| 322 |
|
|
"""
|
| 323 |
|
|
txt = ''
|
| 324 |
|
|
try:
|
| 325 |
|
|
self.copy_input_data = common.analisys_common_info['copy_input_data']
|
| 326 |
|
|
#print "self.copy_input_data = ", self.copy_input_data
|
| 327 |
|
|
except KeyError: self.copy_input_data = 0
|
| 328 |
|
|
if int(self.copy_input_data) == 1:
|
| 329 |
spiga |
1.49 |
## OLI_Daniele deactivate for OSG (wait for LCG UI installed on OSG)
|
| 330 |
|
|
txt += 'if [ $middleware == OSG ]; then\n'
|
| 331 |
|
|
txt += ' #\n'
|
| 332 |
|
|
txt += ' # Copy Input Data from SE to this WN deactivated in OSG mode\n'
|
| 333 |
|
|
txt += ' #\n'
|
| 334 |
|
|
txt += ' echo "Copy Input Data from SE to this WN deactivated in OSG mode"\n'
|
| 335 |
|
|
txt += 'elif [ $middleware == LCG ]; then \n'
|
| 336 |
|
|
txt += ' #\n'
|
| 337 |
|
|
txt += ' # Copy Input Data from SE to this WN\n'
|
| 338 |
|
|
txt += ' #\n'
|
| 339 |
spiga |
1.42 |
### changed by georgia (put a loop copying more than one input files per jobs)
|
| 340 |
spiga |
1.49 |
txt += ' for input_file in $cur_file_list \n'
|
| 341 |
|
|
txt += ' do \n'
|
| 342 |
fanzago |
1.68 |
#### FEDE
|
| 343 |
|
|
#txt += ' echo "which lcg-cp" \n'
|
| 344 |
|
|
#txt += ' which lcg-cp \n'
|
| 345 |
|
|
#########
|
| 346 |
fanzago |
1.70 |
txt += ' lcg-cp --vo $VO --verbose -t 1200 lfn:$input_lfn/$input_file file:`pwd`/$input_file 2>&1\n'
|
| 347 |
fanzago |
1.68 |
txt += ' copy_input_exit_status=$?\n'
|
| 348 |
|
|
txt += ' echo "COPY_INPUT_EXIT_STATUS = $copy_input_exit_status"\n'
|
| 349 |
|
|
txt += ' if [ $copy_input_exit_status -ne 0 ]; then \n'
|
| 350 |
|
|
txt += ' echo "Problems with copying to WN" \n'
|
| 351 |
|
|
txt += ' else \n'
|
| 352 |
|
|
txt += ' echo "input copied into WN" \n'
|
| 353 |
|
|
txt += ' fi \n'
|
| 354 |
spiga |
1.49 |
txt += ' done \n'
|
| 355 |
spiga |
1.43 |
### copy a set of PU ntuples (same for each jobs -- but accessed randomly)
|
| 356 |
spiga |
1.49 |
txt += ' for file in $cur_pu_list \n'
|
| 357 |
|
|
txt += ' do \n'
|
| 358 |
fanzago |
1.68 |
#### FEDE
|
| 359 |
|
|
#txt += ' echo "which lcg-cp" \n'
|
| 360 |
|
|
#txt += ' which lcg-cp \n'
|
| 361 |
|
|
#########
|
| 362 |
fanzago |
1.70 |
txt += ' lcg-cp --vo $VO --verbose -t 1200 lfn:$pu_lfn/$file file:`pwd`/$file 2>&1\n'
|
| 363 |
fanzago |
1.72 |
txt += ' copy_input_pu_exit_status=$?\n'
|
| 364 |
fanzago |
1.68 |
txt += ' echo "COPY_INPUT_PU_EXIT_STATUS = $copy_input_pu_exit_status"\n'
|
| 365 |
|
|
txt += ' if [ $copy_input_pu_exit_status -ne 0 ]; then \n'
|
| 366 |
|
|
txt += ' echo "Problems with copying pu to WN" \n'
|
| 367 |
|
|
txt += ' else \n'
|
| 368 |
|
|
txt += ' echo "input pu files copied into WN" \n'
|
| 369 |
|
|
txt += ' fi \n'
|
| 370 |
spiga |
1.49 |
txt += ' done \n'
|
| 371 |
|
|
txt += ' \n'
|
| 372 |
|
|
txt += ' ### Check SCRATCH space available on WN : \n'
|
| 373 |
|
|
txt += ' df -h \n'
|
| 374 |
|
|
txt += 'fi \n'
|
| 375 |
|
|
|
| 376 |
fanzago |
1.39 |
return txt
|
| 377 |
|
|
|
| 378 |
fanzago |
1.14 |
def wsCopyOutput(self):
|
| 379 |
|
|
"""
|
| 380 |
|
|
Write a CopyResults part of a job script, e.g.
|
| 381 |
|
|
to copy produced output into a storage element.
|
| 382 |
|
|
"""
|
| 383 |
|
|
txt = ''
|
| 384 |
fanzago |
1.30 |
if int(self.copy_data) == 1:
|
| 385 |
fanzago |
1.14 |
txt += '#\n'
|
| 386 |
fanzago |
1.15 |
txt += '# Copy output to SE = $SE\n'
|
| 387 |
fanzago |
1.14 |
txt += '#\n'
|
| 388 |
fanzago |
1.66 |
#txt += 'if [ $exe_result -eq 0 ]; then\n'
|
| 389 |
gutsche |
1.73 |
txt += ' if [ $middleware == OSG ]; then\n'
|
| 390 |
|
|
txt += ' echo "X509_USER_PROXY = $X509_USER_PROXY"\n'
|
| 391 |
|
|
txt += ' echo "source $OSG_APP/glite/setup_glite_ui.sh"\n'
|
| 392 |
|
|
txt += ' source $OSG_APP/glite/setup_glite_ui.sh\n'
|
| 393 |
|
|
txt += ' export X509_CERT_DIR=$OSG_APP/glite/etc/grid-security/certificates\n'
|
| 394 |
|
|
txt += ' echo "export X509_CERT_DIR=$X509_CERT_DIR"\n'
|
| 395 |
|
|
txt += ' fi \n'
|
| 396 |
corvo |
1.34 |
txt += ' for out_file in $file_list ; do\n'
|
| 397 |
gutsche |
1.73 |
txt += ' echo "Trying to copy output file to $SE using lcg-cp"\n'
|
| 398 |
mkirn |
1.77 |
if common.logger.debugLevel() >= 5:
|
| 399 |
|
|
txt += ' echo "lcg-cp --vo $VO -t 2400 --verbose file://`pwd`/$out_file gsiftp://${SE}${SE_PATH}$out_file"\n'
|
| 400 |
|
|
txt += ' exitstring=`lcg-cp --vo $VO -t 2400 --verbose file://\`pwd\`/$out_file gsiftp://${SE}${SE_PATH}$out_file 2>&1`\n'
|
| 401 |
|
|
else:
|
| 402 |
|
|
txt += ' echo "lcg-cp --vo $VO -t 2400 file://`pwd`/$out_file gsiftp://${SE}${SE_PATH}$out_file"\n'
|
| 403 |
|
|
txt += ' exitstring=`lcg-cp --vo $VO -t 2400 file://\`pwd\`/$out_file gsiftp://${SE}${SE_PATH}$out_file 2>&1`\n'
|
| 404 |
gutsche |
1.73 |
txt += ' copy_exit_status=$?\n'
|
| 405 |
|
|
txt += ' echo "COPY_EXIT_STATUS for lcg-cp = $copy_exit_status"\n'
|
| 406 |
corvo |
1.34 |
txt += ' echo "STAGE_OUT = $copy_exit_status"\n'
|
| 407 |
|
|
txt += ' if [ $copy_exit_status -ne 0 ]; then\n'
|
| 408 |
gutsche |
1.73 |
txt += ' echo "Possible problem with SE = $SE"\n'
|
| 409 |
corvo |
1.34 |
txt += ' echo "StageOutExitStatus = 198" | tee -a $RUNTIME_AREA/$repo\n'
|
| 410 |
|
|
txt += ' echo "StageOutExitStatusReason = $exitstring" | tee -a $RUNTIME_AREA/$repo\n'
|
| 411 |
mkirn |
1.77 |
txt += ' echo "lcg-cp failed. For verbose lcg-cp output, use command line option -debug 5."\n'
|
| 412 |
gutsche |
1.73 |
txt += ' echo "lcg-cp failed, attempting srmcp"\n'
|
| 413 |
|
|
txt += ' echo "mkdir -p $HOME/.srmconfig"\n'
|
| 414 |
|
|
txt += ' mkdir -p $HOME/.srmconfig\n'
|
| 415 |
|
|
txt += ' if [ $middleware == LCG ]; then\n'
|
| 416 |
mkirn |
1.74 |
txt += ' echo "srmcp -retry_num 5 -retry_timeout 480000 file:////`pwd`/$out_file srm://${SE}:8443${SE_PATH}$out_file"\n'
|
| 417 |
|
|
txt += ' exitstring=`srmcp -retry_num 5 -retry_timeout 480000 file:////\`pwd\`/$out_file srm://${SE}:8443${SE_PATH}$out_file 2>&1`\n'
|
| 418 |
gutsche |
1.73 |
txt += ' elif [ $middleware == OSG ]; then\n'
|
| 419 |
|
|
txt += ' echo "srmcp -retry_num 5 -retry_timeout 240000 -x509_user_trusted_certificates $OSG_APP/glite/etc/grid-security/certificates file:////`pwd`/$out_file srm://${SE}:8443${SE_PATH}$out_file"\n'
|
| 420 |
|
|
txt += ' exitstring=`srmcp -retry_num 5 -retry_timeout 240000 -x509_user_trusted_certificates $OSG_APP/glite/etc/grid-security/certificates file:////\`pwd\`/$out_file srm://${SE}:8443${SE_PATH}$out_file 2>&1`\n'
|
| 421 |
|
|
txt += ' fi \n'
|
| 422 |
|
|
txt += ' copy_exit_status=$?\n'
|
| 423 |
|
|
txt += ' echo "COPY_EXIT_STATUS for srm = $copy_exit_status"\n'
|
| 424 |
|
|
txt += ' echo "STAGE_OUT = $copy_exit_status"\n'
|
| 425 |
|
|
txt += ' if [ $copy_exit_status -ne 0 ]; then\n'
|
| 426 |
|
|
txt += ' echo "Problems with SE = $SE"\n'
|
| 427 |
|
|
txt += ' echo "StageOutExitStatus = 198" | tee -a $RUNTIME_AREA/$repo\n'
|
| 428 |
|
|
txt += ' echo "StageOutExitStatusReason = $exitstring" | tee -a $RUNTIME_AREA/$repo\n'
|
| 429 |
|
|
txt += ' echo "lcg-cp and srm failed"\n'
|
| 430 |
|
|
txt += ' echo "If storage_path in your config file contains a ? you may need a \? instead."\n'
|
| 431 |
|
|
txt += ' else\n'
|
| 432 |
|
|
txt += ' echo "StageOutSE = $SE" | tee -a $RUNTIME_AREA/$repo\n'
|
| 433 |
|
|
txt += ' echo "StageOutCatalog = " | tee -a $RUNTIME_AREA/$repo\n'
|
| 434 |
|
|
txt += ' echo "output copied into $SE/$SE_PATH directory"\n'
|
| 435 |
|
|
txt += ' echo "StageOutExitStatus = 0" | tee -a $RUNTIME_AREA/$repo\n'
|
| 436 |
|
|
txt += ' echo "srmcp succeeded"\n'
|
| 437 |
|
|
txt += ' fi\n'
|
| 438 |
corvo |
1.34 |
txt += ' else\n'
|
| 439 |
|
|
txt += ' echo "StageOutSE = $SE" | tee -a $RUNTIME_AREA/$repo\n'
|
| 440 |
|
|
txt += ' echo "StageOutCatalog = " | tee -a $RUNTIME_AREA/$repo\n'
|
| 441 |
|
|
txt += ' echo "output copied into $SE/$SE_PATH directory"\n'
|
| 442 |
|
|
txt += ' echo "StageOutExitStatus = 0" | tee -a $RUNTIME_AREA/$repo\n'
|
| 443 |
gutsche |
1.73 |
txt += ' echo "lcg-cp succeeded"\n'
|
| 444 |
corvo |
1.34 |
txt += ' fi\n'
|
| 445 |
|
|
txt += ' done\n'
|
| 446 |
fanzago |
1.66 |
#txt += 'fi\n'
|
| 447 |
fanzago |
1.14 |
return txt
|
| 448 |
|
|
|
| 449 |
|
|
def wsRegisterOutput(self):
|
| 450 |
|
|
"""
|
| 451 |
|
|
Returns part of a job script which does scheduler-specific work.
|
| 452 |
|
|
"""
|
| 453 |
|
|
|
| 454 |
|
|
txt = ''
|
| 455 |
fanzago |
1.30 |
if int(self.register_data) == 1:
|
| 456 |
spiga |
1.49 |
## OLI_Daniele deactivate for OSG (wait for LCG UI installed on OSG)
|
| 457 |
|
|
txt += 'if [ $middleware == OSG ]; then\n'
|
| 458 |
|
|
txt += ' #\n'
|
| 459 |
|
|
txt += ' # Register output to LFC deactivated in OSG mode\n'
|
| 460 |
|
|
txt += ' #\n'
|
| 461 |
|
|
txt += ' echo "Register output to LFC deactivated in OSG mode"\n'
|
| 462 |
|
|
txt += 'elif [ $middleware == LCG ]; then \n'
|
| 463 |
fanzago |
1.14 |
txt += '#\n'
|
| 464 |
fanzago |
1.36 |
txt += '# Register output to LFC\n'
|
| 465 |
fanzago |
1.14 |
txt += '#\n'
|
| 466 |
fanzago |
1.66 |
#txt += ' if [[ $exe_result -eq 0 && $copy_exit_status -eq 0 ]]; then\n'
|
| 467 |
|
|
txt += ' if [ $copy_exit_status -eq 0 ]; then\n'
|
| 468 |
spiga |
1.49 |
txt += ' for out_file in $file_list ; do\n'
|
| 469 |
|
|
txt += ' echo "Trying to register the output file into LFC"\n'
|
| 470 |
fanzago |
1.68 |
#### FEDE
|
| 471 |
|
|
#txt += ' echo "which lcg-rf" \n'
|
| 472 |
|
|
#txt += ' which lcg-rf \n'
|
| 473 |
|
|
#########
|
| 474 |
fanzago |
1.71 |
txt += ' echo "lcg-rf -l $LFN/$out_file --vo $VO -t 1200 sfn://$SE$SE_PATH/$out_file 2>&1"\n'
|
| 475 |
fanzago |
1.70 |
txt += ' lcg-rf -l $LFN/$out_file --vo $VO -t 1200 sfn://$SE$SE_PATH/$out_file 2>&1 \n'
|
| 476 |
fanzago |
1.14 |
txt += ' register_exit_status=$?\n'
|
| 477 |
fanzago |
1.15 |
txt += ' echo "REGISTER_EXIT_STATUS = $register_exit_status"\n'
|
| 478 |
|
|
txt += ' echo "STAGE_OUT = $register_exit_status"\n'
|
| 479 |
fanzago |
1.14 |
txt += ' if [ $register_exit_status -ne 0 ]; then \n'
|
| 480 |
spiga |
1.49 |
txt += ' echo "Problems with the registration to LFC" \n'
|
| 481 |
|
|
txt += ' echo "Try with srm protocol" \n'
|
| 482 |
fanzago |
1.68 |
#### FEDE
|
| 483 |
|
|
#txt += ' echo "which lcg-rf" \n'
|
| 484 |
|
|
#txt += ' which lcg-rf \n'
|
| 485 |
|
|
#########
|
| 486 |
fanzago |
1.71 |
txt += ' echo "lcg-rf -l $LFN/$out_file --vo $VO -t 1200 srm://$SE$SE_PATH/$out_file 2>&1"\n'
|
| 487 |
fanzago |
1.70 |
txt += ' lcg-rf -l $LFN/$out_file --vo $VO -t 1200 srm://$SE$SE_PATH/$out_file 2>&1 \n'
|
| 488 |
spiga |
1.49 |
txt += ' register_exit_status=$?\n'
|
| 489 |
|
|
txt += ' echo "REGISTER_EXIT_STATUS = $register_exit_status"\n'
|
| 490 |
|
|
txt += ' echo "STAGE_OUT = $register_exit_status"\n'
|
| 491 |
|
|
txt += ' if [ $register_exit_status -ne 0 ]; then \n'
|
| 492 |
|
|
txt += ' echo "Problems with the registration into LFC" \n'
|
| 493 |
|
|
txt += ' fi \n'
|
| 494 |
|
|
txt += ' else \n'
|
| 495 |
|
|
txt += ' echo "output registered to LFC"\n'
|
| 496 |
fanzago |
1.14 |
txt += ' fi \n'
|
| 497 |
spiga |
1.49 |
txt += ' echo "StageOutExitStatus = $register_exit_status" | tee -a $RUNTIME_AREA/$repo\n'
|
| 498 |
|
|
txt += ' done\n'
|
| 499 |
fanzago |
1.66 |
#txt += ' elif [[ $exe_result -eq 0 && $copy_exit_status -ne 0 ]]; then \n'
|
| 500 |
|
|
txt += ' else \n'
|
| 501 |
spiga |
1.49 |
txt += ' echo "Trying to copy output file to CloseSE"\n'
|
| 502 |
|
|
txt += ' CLOSE_SE=`edg-brokerinfo getCloseSEs | head -1`\n'
|
| 503 |
|
|
txt += ' for out_file in $file_list ; do\n'
|
| 504 |
fanzago |
1.68 |
#### FEDE
|
| 505 |
|
|
#txt += ' echo "which lcg-cr" \n'
|
| 506 |
|
|
#txt += ' which lcg-cr \n'
|
| 507 |
|
|
#########
|
| 508 |
fanzago |
1.71 |
txt += ' echo "lcg-cr -v -l lfn:${LFN}/$out_file -d $CLOSE_SE -P $LFN/$out_file --vo $VO file://$RUNTIME_AREA/$out_file 2>&1" \n'
|
| 509 |
fanzago |
1.70 |
txt += ' lcg-cr -v -l lfn:${LFN}/$out_file -d $CLOSE_SE -P $LFN/$out_file --vo $VO file://$RUNTIME_AREA/$out_file 2>&1 \n'
|
| 510 |
spiga |
1.49 |
txt += ' register_exit_status=$?\n'
|
| 511 |
|
|
txt += ' echo "REGISTER_EXIT_STATUS = $register_exit_status"\n'
|
| 512 |
|
|
txt += ' echo "STAGE_OUT = $register_exit_status"\n'
|
| 513 |
|
|
txt += ' if [ $register_exit_status -ne 0 ]; then \n'
|
| 514 |
fanzago |
1.66 |
txt += ' echo "Problems with CloseSE or Catalog" \n'
|
| 515 |
spiga |
1.49 |
txt += ' else \n'
|
| 516 |
|
|
txt += ' echo "The program was successfully executed"\n'
|
| 517 |
|
|
txt += ' echo "SE = $CLOSE_SE"\n'
|
| 518 |
|
|
txt += ' echo "LFN for the file is LFN=${LFN}/$out_file"\n'
|
| 519 |
|
|
txt += ' fi \n'
|
| 520 |
|
|
txt += ' echo "StageOutExitStatus = $register_exit_status" | tee -a $RUNTIME_AREA/$repo\n'
|
| 521 |
|
|
txt += ' done\n'
|
| 522 |
fanzago |
1.66 |
#txt += ' else\n'
|
| 523 |
|
|
#txt += ' echo "Problem with the executable"\n'
|
| 524 |
spiga |
1.49 |
txt += ' fi \n'
|
| 525 |
fanzago |
1.68 |
txt += ' exit_status=$register_exit_status\n'
|
| 526 |
fanzago |
1.14 |
txt += 'fi \n'
|
| 527 |
|
|
return txt
|
| 528 |
nsmirnov |
1.1 |
|
| 529 |
spiga |
1.23 |
def loggingInfo(self, id):
|
| 530 |
slacapra |
1.7 |
"""
|
| 531 |
|
|
retrieve the logging info from logging and bookkeeping and return it
|
| 532 |
|
|
"""
|
| 533 |
slacapra |
1.18 |
self.checkProxy()
|
| 534 |
fanzago |
1.24 |
cmd = 'edg-job-get-logging-info -v 2 ' + id
|
| 535 |
slacapra |
1.32 |
#cmd_out = os.popen(cmd)
|
| 536 |
|
|
cmd_out = runCommand(cmd)
|
| 537 |
slacapra |
1.7 |
return cmd_out
|
| 538 |
|
|
|
| 539 |
slacapra |
1.6 |
def listMatch(self, nj):
|
| 540 |
|
|
"""
|
| 541 |
|
|
Check the compatibility of available resources
|
| 542 |
|
|
"""
|
| 543 |
slacapra |
1.18 |
self.checkProxy()
|
| 544 |
slacapra |
1.6 |
jdl = common.job_list[nj].jdlFilename()
|
| 545 |
slacapra |
1.18 |
cmd = 'edg-job-list-match ' + self.configOpt_() + jdl
|
| 546 |
mkirn |
1.74 |
cmd_out = runCommand(cmd,0,45)
|
| 547 |
slacapra |
1.44 |
if not cmd_out:
|
| 548 |
|
|
raise CrabException("ERROR: "+cmd+" failed!")
|
| 549 |
|
|
|
| 550 |
slacapra |
1.6 |
return self.parseListMatch_(cmd_out, jdl)
|
| 551 |
|
|
|
| 552 |
|
|
def parseListMatch_(self, out, jdl):
|
| 553 |
slacapra |
1.31 |
"""
|
| 554 |
|
|
Parse the f* output of edg-list-match and produce something sensible
|
| 555 |
|
|
"""
|
| 556 |
slacapra |
1.6 |
reComment = re.compile( r'^\**$' )
|
| 557 |
|
|
reEmptyLine = re.compile( r'^$' )
|
| 558 |
|
|
reVO = re.compile( r'Selected Virtual Organisation name.*' )
|
| 559 |
slacapra |
1.31 |
reLine = re.compile( r'.*')
|
| 560 |
|
|
reCE = re.compile( r'(.*:.*)')
|
| 561 |
|
|
reCEId = re.compile( r'CEId.*')
|
| 562 |
slacapra |
1.6 |
reNO = re.compile( r'No Computing Element matching' )
|
| 563 |
|
|
reRB = re.compile( r'Connecting to host' )
|
| 564 |
|
|
next = 0
|
| 565 |
|
|
CEs=[]
|
| 566 |
|
|
Match=0
|
| 567 |
slacapra |
1.22 |
|
| 568 |
slacapra |
1.31 |
#print out
|
| 569 |
|
|
lines = reLine.findall(out)
|
| 570 |
|
|
|
| 571 |
|
|
i=0
|
| 572 |
|
|
CEs=[]
|
| 573 |
|
|
for line in lines:
|
| 574 |
|
|
string.strip(line)
|
| 575 |
|
|
#print line
|
| 576 |
|
|
if reNO.match( line ):
|
| 577 |
|
|
common.logger.debug(5,line)
|
| 578 |
|
|
return 0
|
| 579 |
|
|
pass
|
| 580 |
fanzago |
1.28 |
if reVO.match( line ):
|
| 581 |
slacapra |
1.31 |
VO =reVO.match( line ).group()
|
| 582 |
|
|
common.logger.debug(5,"VO "+VO)
|
| 583 |
fanzago |
1.28 |
pass
|
| 584 |
slacapra |
1.31 |
|
| 585 |
fanzago |
1.28 |
if reRB.match( line ):
|
| 586 |
slacapra |
1.31 |
RB = reRB.match(line).group()
|
| 587 |
|
|
common.logger.debug(5,"RB "+RB)
|
| 588 |
fanzago |
1.28 |
pass
|
| 589 |
slacapra |
1.31 |
|
| 590 |
|
|
if reCEId.search( line ):
|
| 591 |
|
|
for lineCE in lines[i:-1]:
|
| 592 |
|
|
if reCE.match( lineCE ):
|
| 593 |
|
|
CE = string.strip(reCE.search(lineCE).group(1))
|
| 594 |
|
|
CEs.append(CE.split(':')[0])
|
| 595 |
|
|
pass
|
| 596 |
|
|
pass
|
| 597 |
fanzago |
1.28 |
pass
|
| 598 |
slacapra |
1.31 |
i=i+1
|
| 599 |
|
|
pass
|
| 600 |
|
|
|
| 601 |
|
|
common.logger.debug(5,"All CE :"+str(CEs))
|
| 602 |
|
|
|
| 603 |
|
|
sites = []
|
| 604 |
|
|
[sites.append(it) for it in CEs if not sites.count(it)]
|
| 605 |
|
|
|
| 606 |
|
|
common.logger.debug(5,"All Sites :"+str(sites))
|
| 607 |
gutsche |
1.56 |
common.logger.message("Matched Sites :"+str(sites))
|
| 608 |
slacapra |
1.31 |
return len(sites)
|
| 609 |
slacapra |
1.6 |
|
| 610 |
|
|
def noMatchFound_(self, jdl):
|
| 611 |
|
|
reReq = re.compile( r'Requirements' )
|
| 612 |
|
|
reString = re.compile( r'"\S*"' )
|
| 613 |
|
|
f = file(jdl,'r')
|
| 614 |
|
|
for line in f.readlines():
|
| 615 |
|
|
line= line.strip()
|
| 616 |
|
|
if reReq.match(line):
|
| 617 |
|
|
for req in reString.findall(line):
|
| 618 |
|
|
if re.search("VO",req):
|
| 619 |
|
|
common.logger.message( "SW required: "+req)
|
| 620 |
|
|
continue
|
| 621 |
|
|
if re.search('"\d+',req):
|
| 622 |
|
|
common.logger.message("Other req : "+req)
|
| 623 |
|
|
continue
|
| 624 |
|
|
common.logger.message( "CE required: "+req)
|
| 625 |
|
|
break
|
| 626 |
|
|
pass
|
| 627 |
|
|
raise CrabException("No compatible resources found!")
|
| 628 |
|
|
|
| 629 |
nsmirnov |
1.1 |
def submit(self, nj):
|
| 630 |
nsmirnov |
1.3 |
"""
|
| 631 |
|
|
Submit one EDG job.
|
| 632 |
|
|
"""
|
| 633 |
nsmirnov |
1.1 |
|
| 634 |
slacapra |
1.18 |
self.checkProxy()
|
| 635 |
nsmirnov |
1.1 |
jid = None
|
| 636 |
|
|
jdl = common.job_list[nj].jdlFilename()
|
| 637 |
slacapra |
1.18 |
|
| 638 |
|
|
cmd = 'edg-job-submit ' + self.configOpt_() + jdl
|
| 639 |
nsmirnov |
1.1 |
cmd_out = runCommand(cmd)
|
| 640 |
|
|
if cmd_out != None:
|
| 641 |
slacapra |
1.18 |
reSid = re.compile( r'https.+' )
|
| 642 |
slacapra |
1.20 |
jid = reSid.search(cmd_out).group()
|
| 643 |
nsmirnov |
1.3 |
pass
|
| 644 |
nsmirnov |
1.1 |
return jid
|
| 645 |
|
|
|
| 646 |
fanzago |
1.33 |
def resubmit(self, nj_list):
|
| 647 |
|
|
"""
|
| 648 |
|
|
Prepare jobs to be submit
|
| 649 |
|
|
"""
|
| 650 |
|
|
return
|
| 651 |
|
|
|
| 652 |
slacapra |
1.8 |
def getExitStatus(self, id):
|
| 653 |
|
|
return self.getStatusAttribute_(id, 'exit_code')
|
| 654 |
fanzago |
1.10 |
|
| 655 |
nsmirnov |
1.1 |
def queryStatus(self, id):
|
| 656 |
slacapra |
1.8 |
return self.getStatusAttribute_(id, 'status')
|
| 657 |
fanzago |
1.10 |
|
| 658 |
spiga |
1.9 |
def queryDest(self, id):
|
| 659 |
|
|
return self.getStatusAttribute_(id, 'destination')
|
| 660 |
|
|
|
| 661 |
slacapra |
1.8 |
|
| 662 |
|
|
def getStatusAttribute_(self, id, attr):
|
| 663 |
nsmirnov |
1.1 |
""" Query a status of the job with id """
|
| 664 |
slacapra |
1.8 |
|
| 665 |
slacapra |
1.18 |
self.checkProxy()
|
| 666 |
slacapra |
1.8 |
hstates = {}
|
| 667 |
fanzago |
1.12 |
Status = importName('edg_wl_userinterface_common_LbWrapper', 'Status')
|
| 668 |
slacapra |
1.8 |
# Bypass edg-job-status interfacing directly to C++ API
|
| 669 |
|
|
# Job attribute vector to retrieve status without edg-job-status
|
| 670 |
|
|
level = 0
|
| 671 |
|
|
# Instance of the Status class provided by LB API
|
| 672 |
|
|
jobStat = Status()
|
| 673 |
|
|
st = 0
|
| 674 |
|
|
jobStat.getStatus(id, level)
|
| 675 |
|
|
err, apiMsg = jobStat.get_error()
|
| 676 |
|
|
if err:
|
| 677 |
fanzago |
1.26 |
common.logger.debug(5,'Error caught' + apiMsg)
|
| 678 |
nsmirnov |
1.1 |
return None
|
| 679 |
slacapra |
1.8 |
else:
|
| 680 |
|
|
for i in range(len(self.states)):
|
| 681 |
|
|
# Fill an hash table with all information retrieved from LB API
|
| 682 |
|
|
hstates[ self.states[i] ] = jobStat.loadStatus(st)[i]
|
| 683 |
|
|
result = jobStat.loadStatus(st)[ self.states.index(attr) ]
|
| 684 |
|
|
return result
|
| 685 |
nsmirnov |
1.1 |
|
| 686 |
|
|
def queryDetailedStatus(self, id):
|
| 687 |
|
|
""" Query a detailed status of the job with id """
|
| 688 |
|
|
cmd = 'edg-job-status '+id
|
| 689 |
|
|
cmd_out = runCommand(cmd)
|
| 690 |
|
|
return cmd_out
|
| 691 |
|
|
|
| 692 |
|
|
def getOutput(self, id):
|
| 693 |
nsmirnov |
1.5 |
"""
|
| 694 |
|
|
Get output for a finished job with id.
|
| 695 |
|
|
Returns the name of directory with results.
|
| 696 |
|
|
"""
|
| 697 |
slacapra |
1.6 |
|
| 698 |
slacapra |
1.18 |
self.checkProxy()
|
| 699 |
slacapra |
1.6 |
cmd = 'edg-job-get-output --dir ' + common.work_space.resDir() + ' ' + id
|
| 700 |
nsmirnov |
1.1 |
cmd_out = runCommand(cmd)
|
| 701 |
nsmirnov |
1.5 |
|
| 702 |
|
|
# Determine the output directory name
|
| 703 |
|
|
dir = common.work_space.resDir()
|
| 704 |
corvo |
1.55 |
dir += os.environ['USER']
|
| 705 |
nsmirnov |
1.5 |
dir += '_' + os.path.basename(id)
|
| 706 |
|
|
return dir
|
| 707 |
nsmirnov |
1.1 |
|
| 708 |
|
|
def cancel(self, id):
|
| 709 |
|
|
""" Cancel the EDG job with id """
|
| 710 |
slacapra |
1.18 |
self.checkProxy()
|
| 711 |
nsmirnov |
1.1 |
cmd = 'edg-job-cancel --noint ' + id
|
| 712 |
|
|
cmd_out = runCommand(cmd)
|
| 713 |
|
|
return cmd_out
|
| 714 |
|
|
|
| 715 |
fanzago |
1.10 |
def createSchScript(self, nj):
|
| 716 |
nsmirnov |
1.1 |
"""
|
| 717 |
|
|
Create a JDL-file for EDG.
|
| 718 |
|
|
"""
|
| 719 |
|
|
|
| 720 |
|
|
job = common.job_list[nj]
|
| 721 |
|
|
jbt = job.type()
|
| 722 |
|
|
inp_sandbox = jbt.inputSandbox(nj)
|
| 723 |
|
|
out_sandbox = jbt.outputSandbox(nj)
|
| 724 |
fanzago |
1.10 |
inp_storage_subdir = ''
|
| 725 |
nsmirnov |
1.1 |
|
| 726 |
|
|
title = '# This JDL was generated by '+\
|
| 727 |
|
|
common.prog_name+' (version '+common.prog_version_str+')\n'
|
| 728 |
|
|
jt_string = ''
|
| 729 |
fanzago |
1.14 |
|
| 730 |
|
|
|
| 731 |
nsmirnov |
1.1 |
|
| 732 |
|
|
SPL = inp_storage_subdir
|
| 733 |
|
|
if ( SPL and SPL[-1] != '/' ) : SPL = SPL + '/'
|
| 734 |
|
|
|
| 735 |
|
|
jdl_fname = job.jdlFilename()
|
| 736 |
|
|
jdl = open(jdl_fname, 'w')
|
| 737 |
|
|
jdl.write(title)
|
| 738 |
|
|
|
| 739 |
|
|
script = job.scriptFilename()
|
| 740 |
|
|
jdl.write('Executable = "' + os.path.basename(script) +'";\n')
|
| 741 |
|
|
jdl.write(jt_string)
|
| 742 |
|
|
|
| 743 |
fanzago |
1.14 |
### only one .sh JDL has arguments:
|
| 744 |
slacapra |
1.8 |
|
| 745 |
gutsche |
1.56 |
### Fabio
|
| 746 |
|
|
jdl.write('Arguments = "' + str(nj+1)+' '+ jbt.getJobTypeArguments(nj, "EDG") +'";\n')
|
| 747 |
nsmirnov |
1.1 |
inp_box = 'InputSandbox = { '
|
| 748 |
|
|
inp_box = inp_box + '"' + script + '",'
|
| 749 |
|
|
|
| 750 |
|
|
if inp_sandbox != None:
|
| 751 |
|
|
for fl in inp_sandbox:
|
| 752 |
|
|
inp_box = inp_box + ' "' + fl + '",'
|
| 753 |
|
|
pass
|
| 754 |
|
|
pass
|
| 755 |
|
|
|
| 756 |
|
|
#if common.use_jam:
|
| 757 |
|
|
# inp_box = inp_box+' "'+common.bin_dir+'/'+common.run_jam+'",'
|
| 758 |
fanzago |
1.40 |
|
| 759 |
corvo |
1.34 |
# Marco (VERY TEMPORARY ML STUFF)
|
| 760 |
|
|
inp_box = inp_box+' "' + os.path.abspath(os.environ['CRABDIR']+'/python/'+'report.py') + '", "' +\
|
| 761 |
gutsche |
1.47 |
os.path.abspath(os.environ['CRABDIR']+'/python/'+'DashboardAPI.py') + '", "'+\
|
| 762 |
corvo |
1.34 |
os.path.abspath(os.environ['CRABDIR']+'/python/'+'Logger.py') + '", "'+\
|
| 763 |
|
|
os.path.abspath(os.environ['CRABDIR']+'/python/'+'ProcInfo.py') + '", "'+\
|
| 764 |
|
|
os.path.abspath(os.environ['CRABDIR']+'/python/'+'apmon.py') + '"'
|
| 765 |
|
|
# End Marco
|
| 766 |
nsmirnov |
1.1 |
|
| 767 |
fanzago |
1.40 |
if (not jbt.additional_inbox_files == []):
|
| 768 |
|
|
inp_box = inp_box + ', '
|
| 769 |
|
|
for addFile in jbt.additional_inbox_files:
|
| 770 |
|
|
addFile = os.path.abspath(addFile)
|
| 771 |
|
|
inp_box = inp_box+' "'+addFile+'",'
|
| 772 |
|
|
pass
|
| 773 |
nsmirnov |
1.1 |
|
| 774 |
|
|
if inp_box[-1] == ',' : inp_box = inp_box[:-1]
|
| 775 |
|
|
inp_box = inp_box + ' };\n'
|
| 776 |
|
|
jdl.write(inp_box)
|
| 777 |
|
|
|
| 778 |
|
|
jdl.write('StdOutput = "' + job.stdout() + '";\n')
|
| 779 |
|
|
jdl.write('StdError = "' + job.stderr() + '";\n')
|
| 780 |
fanzago |
1.14 |
|
| 781 |
|
|
|
| 782 |
|
|
if job.stdout() == job.stderr():
|
| 783 |
|
|
out_box = 'OutputSandbox = { "' + \
|
| 784 |
|
|
job.stdout() + '", ".BrokerInfo",'
|
| 785 |
|
|
else:
|
| 786 |
|
|
out_box = 'OutputSandbox = { "' + \
|
| 787 |
|
|
job.stdout() + '", "' + \
|
| 788 |
|
|
job.stderr() + '", ".BrokerInfo",'
|
| 789 |
|
|
|
| 790 |
fanzago |
1.30 |
if int(self.return_data) == 1:
|
| 791 |
fanzago |
1.14 |
if out_sandbox != None:
|
| 792 |
|
|
for fl in out_sandbox:
|
| 793 |
|
|
out_box = out_box + ' "' + fl + '",'
|
| 794 |
|
|
pass
|
| 795 |
nsmirnov |
1.1 |
pass
|
| 796 |
|
|
pass
|
| 797 |
fanzago |
1.14 |
|
| 798 |
nsmirnov |
1.1 |
if out_box[-1] == ',' : out_box = out_box[:-1]
|
| 799 |
|
|
out_box = out_box + ' };'
|
| 800 |
|
|
jdl.write(out_box+'\n')
|
| 801 |
|
|
|
| 802 |
fanzago |
1.14 |
|
| 803 |
fanzago |
1.38 |
req='Requirements = '
|
| 804 |
slacapra |
1.62 |
noreq=req
|
| 805 |
gutsche |
1.78 |
req = req + jbt.getRequirements(nj)
|
| 806 |
spiga |
1.49 |
#### and USER REQUIREMENT
|
| 807 |
fanzago |
1.38 |
if self.EDG_requirements:
|
| 808 |
slacapra |
1.62 |
if (req != noreq):
|
| 809 |
|
|
req = req + ' && '
|
| 810 |
|
|
req = req + self.EDG_requirements
|
| 811 |
fanzago |
1.48 |
#### FEDE #####
|
| 812 |
|
|
if self.EDG_ce_white_list:
|
| 813 |
|
|
ce_white_list = string.split(self.EDG_ce_white_list,',')
|
| 814 |
|
|
#print "req = ", req
|
| 815 |
|
|
for i in range(len(ce_white_list)):
|
| 816 |
|
|
if i == 0:
|
| 817 |
slacapra |
1.62 |
if (req != noreq):
|
| 818 |
|
|
req = req + ' && '
|
| 819 |
|
|
req = req + '((RegExp("' + ce_white_list[i] + '", other.GlueCEUniqueId))'
|
| 820 |
fanzago |
1.48 |
pass
|
| 821 |
|
|
else:
|
| 822 |
|
|
req = req + ' || (RegExp("' + ce_white_list[i] + '", other.GlueCEUniqueId))'
|
| 823 |
|
|
req = req + ')'
|
| 824 |
|
|
|
| 825 |
|
|
if self.EDG_ce_black_list:
|
| 826 |
|
|
ce_black_list = string.split(self.EDG_ce_black_list,',')
|
| 827 |
|
|
for ce in ce_black_list:
|
| 828 |
slacapra |
1.62 |
if (req != noreq):
|
| 829 |
|
|
req = req + ' && '
|
| 830 |
|
|
req = req + '(!RegExp("' + ce + '", other.GlueCEUniqueId))'
|
| 831 |
fanzago |
1.48 |
pass
|
| 832 |
slacapra |
1.62 |
|
| 833 |
fanzago |
1.48 |
###############
|
| 834 |
slacapra |
1.62 |
clockTime=480
|
| 835 |
fanzago |
1.38 |
if self.EDG_clock_time:
|
| 836 |
slacapra |
1.62 |
clockTime= self.EDG_clock_time
|
| 837 |
|
|
if (req != noreq):
|
| 838 |
|
|
req = req + ' && '
|
| 839 |
|
|
req = req + '((other.GlueCEPolicyMaxWallClockTime == 0) || (other.GlueCEPolicyMaxWallClockTime>='+str(clockTime)+'))'
|
| 840 |
fanzago |
1.48 |
|
| 841 |
slacapra |
1.62 |
cpuTime=1000
|
| 842 |
fanzago |
1.38 |
if self.EDG_cpu_time:
|
| 843 |
slacapra |
1.62 |
cpuTime=self.EDG_cpu_time
|
| 844 |
|
|
if (req != noreq):
|
| 845 |
|
|
req = req + ' && '
|
| 846 |
|
|
req = req + '((other.GlueCEPolicyMaxCPUTime == 0) || (other.GlueCEPolicyMaxCPUTime>='+str(cpuTime)+'))'
|
| 847 |
gutsche |
1.60 |
|
| 848 |
slacapra |
1.62 |
if (req != noreq):
|
| 849 |
fanzago |
1.14 |
req = req + ';\n'
|
| 850 |
|
|
jdl.write(req)
|
| 851 |
|
|
|
| 852 |
nsmirnov |
1.1 |
jdl.write('VirtualOrganisation = "' + self.VO + '";\n')
|
| 853 |
|
|
|
| 854 |
|
|
if ( self.EDG_retry_count ):
|
| 855 |
|
|
jdl.write('RetryCount = '+self.EDG_retry_count+';\n')
|
| 856 |
|
|
pass
|
| 857 |
|
|
|
| 858 |
slacapra |
1.51 |
jdl.write('MyProxyServer = "' + self.proxyServer + '";\n')
|
| 859 |
|
|
|
| 860 |
nsmirnov |
1.1 |
jdl.close()
|
| 861 |
|
|
return
|
| 862 |
slacapra |
1.18 |
|
| 863 |
|
|
def checkProxy(self):
|
| 864 |
|
|
"""
|
| 865 |
|
|
Function to check the Globus proxy.
|
| 866 |
|
|
"""
|
| 867 |
|
|
if (self.proxyValid): return
|
| 868 |
|
|
timeleft = -999
|
| 869 |
slacapra |
1.50 |
minTimeLeft=10*3600 # in seconds
|
| 870 |
slacapra |
1.51 |
|
| 871 |
|
|
minTimeLeftServer = 100 # in hours
|
| 872 |
|
|
|
| 873 |
slacapra |
1.50 |
#cmd = 'voms-proxy-info -exists -valid '+str(minTimeLeft)+':00'
|
| 874 |
|
|
#cmd = 'voms-proxy-info -timeleft'
|
| 875 |
|
|
mustRenew = 0
|
| 876 |
fanzago |
1.69 |
timeLeftLocal = runCommand('voms-proxy-info -timeleft 2>/dev/null')
|
| 877 |
slacapra |
1.50 |
timeLeftServer = -999
|
| 878 |
fanzago |
1.53 |
if not timeLeftLocal or int(timeLeftLocal) <= 0 or not isInt(timeLeftLocal):
|
| 879 |
slacapra |
1.50 |
mustRenew = 1
|
| 880 |
|
|
else:
|
| 881 |
fanzago |
1.69 |
timeLeftServer = runCommand('voms-proxy-info -actimeleft 2>/dev/null | head -1')
|
| 882 |
slacapra |
1.50 |
if not timeLeftServer or not isInt(timeLeftServer):
|
| 883 |
|
|
mustRenew = 1
|
| 884 |
slacapra |
1.54 |
elif timeLeftLocal<minTimeLeft or timeLeftServer<minTimeLeft:
|
| 885 |
slacapra |
1.50 |
mustRenew = 1
|
| 886 |
|
|
pass
|
| 887 |
|
|
pass
|
| 888 |
|
|
|
| 889 |
slacapra |
1.51 |
if mustRenew:
|
| 890 |
gutsche |
1.58 |
common.logger.message( "No valid proxy found or remaining time of validity of already existing proxy shorter than 10 hours!\n Creating a user proxy with default length of 96h\n")
|
| 891 |
slacapra |
1.79 |
cmd = 'voms-proxy-init -voms '+self.VO+' -valid 96:00'
|
| 892 |
|
|
if self.role:
|
| 893 |
|
|
cmd = 'voms-proxy-init -voms '+self.VO+':/'+self.VO+'/role='+self.role+' -valid 96:00'
|
| 894 |
slacapra |
1.18 |
try:
|
| 895 |
slacapra |
1.32 |
# SL as above: damn it!
|
| 896 |
slacapra |
1.19 |
out = os.system(cmd)
|
| 897 |
|
|
if (out>0): raise CrabException("Unable to create a valid proxy!\n")
|
| 898 |
slacapra |
1.18 |
except:
|
| 899 |
|
|
msg = "Unable to create a valid proxy!\n"
|
| 900 |
|
|
raise CrabException(msg)
|
| 901 |
|
|
pass
|
| 902 |
slacapra |
1.51 |
|
| 903 |
|
|
## now I do have a voms proxy valid, and I check the myproxy server
|
| 904 |
|
|
renewProxy = 0
|
| 905 |
|
|
cmd = 'myproxy-info -d -s '+self.proxyServer
|
| 906 |
|
|
cmd_out = runCommand(cmd,0,20)
|
| 907 |
|
|
if not cmd_out:
|
| 908 |
|
|
common.logger.message('No credential delegated to myproxy server '+self.proxyServer+' will do now')
|
| 909 |
|
|
renewProxy = 1
|
| 910 |
|
|
else:
|
| 911 |
|
|
# if myproxy exist but not long enough, renew
|
| 912 |
|
|
reTime = re.compile( r'timeleft: (\d+)' )
|
| 913 |
|
|
#print "<"+str(reTime.search( cmd_out ).group(1))+">"
|
| 914 |
|
|
if reTime.match( cmd_out ):
|
| 915 |
|
|
time = reTime.search( line ).group(1)
|
| 916 |
|
|
if time < minTimeLeftServer:
|
| 917 |
|
|
renewProxy = 1
|
| 918 |
|
|
common.logger.message('No credential delegation will expire in '+time+' hours: renew it')
|
| 919 |
|
|
pass
|
| 920 |
|
|
pass
|
| 921 |
|
|
|
| 922 |
|
|
# if not, create one.
|
| 923 |
|
|
if renewProxy:
|
| 924 |
|
|
cmd = 'myproxy-init -d -n -s '+self.proxyServer
|
| 925 |
|
|
out = os.system(cmd)
|
| 926 |
|
|
if (out>0):
|
| 927 |
fanzago |
1.53 |
raise CrabException("Unable to delegate the proxy to myproxyserver "+self.proxyServer+" !\n")
|
| 928 |
slacapra |
1.51 |
pass
|
| 929 |
|
|
|
| 930 |
|
|
# cache proxy validity
|
| 931 |
slacapra |
1.18 |
self.proxyValid=1
|
| 932 |
|
|
return
|
| 933 |
spiga |
1.49 |
|
| 934 |
slacapra |
1.18 |
def configOpt_(self):
|
| 935 |
|
|
edg_ui_cfg_opt = ' '
|
| 936 |
|
|
if self.edg_config:
|
| 937 |
slacapra |
1.51 |
edg_ui_cfg_opt = ' -c ' + self.edg_config + ' '
|
| 938 |
slacapra |
1.18 |
if self.edg_config_vo:
|
| 939 |
slacapra |
1.51 |
edg_ui_cfg_opt += ' --config-vo ' + self.edg_config_vo + ' '
|
| 940 |
slacapra |
1.18 |
return edg_ui_cfg_opt
|
