ViewVC Help

View File | Revision Log | Show Annotations | Root Listing

root/cvsroot/COMP/CRAB/python/SchedulerEdg.py

Comparing COMP/CRAB/python/SchedulerEdg.py (file contents):
Revision 1.7 by slacapra, Mon Jul 25 14:31:24 2005 UTC vs.
Revision 1.109 by corvo, Wed Dec 13 11:44:29 2006 UTC

#	Line 2 | Line 2 | from Scheduler import Scheduler
2		from crab_logger import Logger
3		from crab_exceptions import *
4		from crab_util import *
5	+	from EdgConfig import *
6		import common
7
8	<	import os, sys, tempfile
8	>	import os, sys, time, gzip
9
10		class SchedulerEdg(Scheduler):
11		def __init__(self):
12		Scheduler.__init__(self,"EDG")
13	+	self.states = [ "Acl", "cancelReason", "cancelling","ce_node","children", \
14	+	"children_hist","children_num","children_states","condorId","condor_jdl", \
15	+	"cpuTime","destination", "done_code","exit_code","expectFrom", \
16	+	"expectUpdate","globusId","jdl","jobId","jobtype", \
17	+	"lastUpdateTime","localId","location", "matched_jdl","network_server", \
18	+	"owner","parent_job", "reason","resubmitted","rsl","seed",\
19	+	"stateEnterTime","stateEnterTimes","subjob_failed", \
20	+	"user tags" , "status" , "status_code","hierarchy"]
21	+
22		return
23
24		def configure(self, cfg_params):
25
26	<	try: self.edg_ui_cfg = cfg_params["EDG.rb_config"]
27	<	except KeyError: self.edg_ui_cfg = ''
28	<
29	<	try: self.edg_config = cfg_params["EDG.config"]
30	<	except KeyError: self.edg_config = ''
31	<
32	<	try: self.edg_config_vo = cfg_params["EDG.config_vo"]
33	<	except KeyError: self.edg_config_vo = ''
26	>	try:
27	>	RB=cfg_params["EDG.rb"]
28	>	self.rb_param_file=self.rb_configure(RB)
29	>	except KeyError:
30	>	self.rb_param_file=''
31	>	pass
32	>	try:
33	>	self.proxyServer = cfg_params["EDG.proxy_server"]
34	>	except KeyError:
35	>	self.proxyServer = 'myproxy.cern.ch'
36	>	common.logger.debug(5,'Setting myproxy server to '+self.proxyServer)
37
38	+	try:
39	+	self.group = cfg_params["EDG.group"]
40	+	except KeyError:
41	+	self.group = None
42	+
43	+	try:
44	+	self.role = cfg_params["EDG.role"]
45	+	except KeyError:
46	+	self.role = None
47	+
48		try: self.LCG_version = cfg_params["EDG.lcg_version"]
49		except KeyError: self.LCG_version = '2'
50
51	+	try:
52	+	self.EDG_ce_black_list = cfg_params['EDG.ce_black_list']
53	+	except KeyError:
54	+	self.EDG_ce_black_list  = ''
55	+
56	+	try:
57	+	self.EDG_ce_white_list = cfg_params['EDG.ce_white_list']
58	+	except KeyError: self.EDG_ce_white_list = ''
59	+
60	+	try: self.VO = cfg_params['EDG.virtual_organization']
61	+	except KeyError: self.VO = 'cms'
62	+
63	+	try: self.copy_input_data = cfg_params["USER.copy_input_data"]
64	+	except KeyError: self.copy_input_data = 0
65	+
66	+	try: self.return_data = cfg_params['USER.return_data']
67	+	except KeyError: self.return_data = 0
68	+
69	+	try:
70	+	self.copy_data = cfg_params["USER.copy_data"]
71	+	if int(self.copy_data) == 1:
72	+	try:
73	+	self.SE = cfg_params['USER.storage_element']
74	+	self.SE_PATH = cfg_params['USER.storage_path']
75	+	except KeyError:
76	+	msg = "Error. The [USER] section does not have 'storage_element'"
77	+	msg = msg + " and/or 'storage_path' entries, necessary to copy the output"
78	+	common.logger.message(msg)
79	+	raise CrabException(msg)
80	+	except KeyError: self.copy_data = 0
81	+
82	+	if ( int(self.return_data) == 0 and int(self.copy_data) == 0 ):
83	+	msg = 'Warning: return_data = 0 and copy_data = 0 ==> your exe output will be lost\n'
84	+	msg = msg + 'Please modify return_data and copy_data value in your crab.cfg file\n'
85	+	raise CrabException(msg)
86	+
87	+	try:
88	+	self.lfc_host = cfg_params['EDG.lfc_host']
89	+	except KeyError:
90	+	msg = "Error. The [EDG] section does not have 'lfc_host' value"
91	+	msg = msg + " it's necessary to know the LFC host name"
92	+	common.logger.message(msg)
93	+	raise CrabException(msg)
94	+	try:
95	+	self.lcg_catalog_type = cfg_params['EDG.lcg_catalog_type']
96	+	except KeyError:
97	+	msg = "Error. The [EDG] section does not have 'lcg_catalog_type' value"
98	+	msg = msg + " it's necessary to know the catalog type"
99	+	common.logger.message(msg)
100	+	raise CrabException(msg)
101	+	try:
102	+	self.lfc_home = cfg_params['EDG.lfc_home']
103	+	except KeyError:
104	+	msg = "Error. The [EDG] section does not have 'lfc_home' value"
105	+	msg = msg + " it's necessary to know the home catalog dir"
106	+	common.logger.message(msg)
107	+	raise CrabException(msg)
108	+
109	+	try:
110	+	self.register_data = cfg_params["USER.register_data"]
111	+	if int(self.register_data) == 1:
112	+	try:
113	+	self.LFN = cfg_params['USER.lfn_dir']
114	+	except KeyError:
115	+	msg = "Error. The [USER] section does not have 'lfn_dir' value"
116	+	msg = msg + " it's necessary for LCF registration"
117	+	common.logger.message(msg)
118	+	raise CrabException(msg)
119	+	except KeyError: self.register_data = 0
120	+
121	+	if ( int(self.copy_data) == 0 and int(self.register_data) == 1 ):
122	+	msg = 'Warning: register_data = 1 must be used with copy_data = 1\n'
123	+	msg = msg + 'Please modify copy_data value in your crab.cfg file\n'
124	+	common.logger.message(msg)
125	+	raise CrabException(msg)
126	+
127		try: self.EDG_requirements = cfg_params['EDG.requirements']
128		except KeyError: self.EDG_requirements = ''
129
130	+	try: self.EDG_addJdlParam = string.split(cfg_params['EDG.additional_jdl_parameters'],',')
131	+	except KeyError: self.EDG_addJdlParam = []
132	+
133		try: self.EDG_retry_count = cfg_params['EDG.retry_count']
134		except KeyError: self.EDG_retry_count = ''
135
136	<	try:
137	<	self.VO = cfg_params['EDG.virtual_organization']
36	<	except KeyError:
37	<	msg = 'EDG.virtual_organization is mandatory.'
38	<	raise CrabException(msg)
136	>	try: self.EDG_shallow_retry_count= cfg_params['EDG.shallow_retry_count']
137	>	except KeyError: self.EDG_shallow_retry_count = ''
138
139	<
140	<	#self.scripts_dir = common.bin_dir + '/scripts'
141	<	#self.cmd_prefix = 'edg'
142	<	#if common.LCG_version == '0' : self.cmd_prefix = 'dg'
139	>	try: self.EDG_clock_time = cfg_params['EDG.max_wall_clock_time']
140	>	except KeyError: self.EDG_clock_time= ''
141	>
142	>	try: self.EDG_cpu_time = cfg_params['EDG.max_cpu_time']
143	>	except KeyError: self.EDG_cpu_time = ''
144
145		# Add EDG_WL_LOCATION to the python path
146
#	Line 55 | Line 155 | class SchedulerEdg(Scheduler):
155		libPath=os.path.join(path, "lib", "python")
156		sys.path.append(libPath)
157
158	<	self.checkProxy_()
158	>	self.proxyValid=0
159	>
160	>	try:
161	>	self._taskId = cfg_params['taskId']
162	>	except:
163	>	self._taskId = ''
164	>
165	>	try: self.jobtypeName = cfg_params['CRAB.jobtype']
166	>	except KeyError: self.jobtypeName = ''
167	>
168	>	try: self.schedulerName = cfg_params['CRAB.scheduler']
169	>	except KeyError: self.scheduler = ''
170	>
171	>	try: self.dontCheckProxy=cfg_params["EDG.dont_check_proxy"]
172	>	except KeyError: self.dontCheckProxy = 0
173	>
174		return
175
176	+
177	+	def rb_configure(self, RB):
178	+	self.edg_config = ''
179	+	self.edg_config_vo = ''
180	+	self.rb_param_file = ''
181	+
182	+	edgConfig = EdgConfig(RB)
183	+	self.edg_config = edgConfig.config()
184	+	self.edg_config_vo = edgConfig.configVO()
185	+
186	+	if (self.edg_config and self.edg_config_vo != ''):
187	+	self.rb_param_file = 'RBconfig = "'+self.edg_config+'";\nRBconfigVO = "'+self.edg_config_vo+'";'
188	+	#print "rb_param_file = ", self.rb_param_file
189	+	return self.rb_param_file
190	+
191	+
192	+	def sched_parameter(self):
193	+	"""
194	+	Returns file with requirements and scheduler-specific parameters
195	+	"""
196	+	index = int(common.jobDB.nJobs()) - 1
197	+	job = common.job_list[index]
198	+	jbt = job.type()
199	+
200	+	lastBlock=-1
201	+	first = []
202	+	for n in range(common.jobDB.nJobs()):
203	+	currBlock=common.jobDB.block(n)
204	+	if (currBlock!=lastBlock):
205	+	lastBlock = currBlock
206	+	first.append(n)
207	+
208	+	req = ''
209	+	req = req + jbt.getRequirements()
210	+
211	+	if self.EDG_requirements:
212	+	if (req == ' '):
213	+	req = req + self.EDG_requirements
214	+	else:
215	+	req = req +  ' && ' + self.EDG_requirements
216	+
217	+	if self.EDG_ce_white_list:
218	+	ce_white_list = string.split(self.EDG_ce_white_list,',')
219	+	for i in range(len(ce_white_list)):
220	+	if i == 0:
221	+	if (req == ' '):
222	+	req = req + '((RegExp("' + string.strip(ce_white_list[i]) + '", other.GlueCEUniqueId))'
223	+	else:
224	+	req = req +  ' && ((RegExp("' +  string.strip(ce_white_list[i]) + '", other.GlueCEUniqueId))'
225	+	pass
226	+	else:
227	+	req = req +  ' || (RegExp("' +  string.strip(ce_white_list[i]) + '", other.GlueCEUniqueId))'
228	+	req = req + ')'
229	+
230	+	if self.EDG_ce_black_list:
231	+	ce_black_list = string.split(self.EDG_ce_black_list,',')
232	+	for ce in ce_black_list:
233	+	if (req == ' '):
234	+	req = req + '(!RegExp("' + string.strip(ce) + '", other.GlueCEUniqueId))'
235	+	else:
236	+	req = req +  ' && (!RegExp("' + string.strip(ce) + '", other.GlueCEUniqueId))'
237	+	pass
238	+	if self.EDG_clock_time:
239	+	if (req == ' '):
240	+	req = req + 'other.GlueCEPolicyMaxWallClockTime>='+self.EDG_clock_time
241	+	else:
242	+	req = req + ' && other.GlueCEPolicyMaxWallClockTime>='+self.EDG_clock_time
243	+
244	+	if self.EDG_cpu_time:
245	+	if (req == ' '):
246	+	req = req + ' other.GlueCEPolicyMaxCPUTime>='+self.EDG_cpu_time
247	+	else:
248	+	req = req + ' && other.GlueCEPolicyMaxCPUTime>='+self.EDG_cpu_time
249	+
250	+	for i in range(len(first)): # Add loop DS
251	+	self.param='sched_param_'+str(i)+'.clad'
252	+	param_file = open(common.work_space.shareDir()+'/'+self.param, 'w')
253	+
254	+	itr4=self.findSites_(first[i])
255	+	for arg in itr4:
256	+	req = req + ' && anyMatch(other.storage.CloseSEs, ('+str(arg)+'))'
257	+	param_file.write('Requirements = '+req +';\n')
258	+
259	+	if (self.rb_param_file != ''):
260	+	param_file.write(self.rb_param_file)
261	+
262	+	if len(self.EDG_addJdlParam):
263	+	for p in self.EDG_addJdlParam:
264	+	param_file.write(p)
265	+
266	+	param_file.close()
267	+
268	+
269		def wsSetupEnvironment(self):
270		"""
271		Returns part of a job script which does scheduler-specific work.
272		"""
273	<	txt = '\n'
274	<	txt += 'CloseCEs=`edg-brokerinfo getCE`\n'
275	<	txt += 'echo "CloseCEs = $CloseCEs"\n'
276	<	txt += 'CE=`echo $CloseCEs | sed -e "s/:.*//"`\n'
277	<	txt += 'echo "CE = $CE"\n'
273	>	txt = ''
274	>	txt += '# strip arguments\n'
275	>	txt += 'echo "strip arguments"\n'
276	>	txt += 'args=("$@")\n'
277	>	txt += 'nargs=$#\n'
278	>	txt += 'shift $nargs\n'
279	>	txt += "# job number (first parameter for job wrapper)\n"
280	>	#txt += "NJob=$1\n"
281	>	txt += "NJob=${args[0]}\n"
282	>
283	>	txt += '# job identification to DashBoard \n'
284	>	txt += 'MonitorJobID=`echo ${NJob}_$EDG_WL_JOBID`\n'
285	>	txt += 'SyncGridJobId=`echo $EDG_WL_JOBID`\n'
286	>	txt += 'MonitorID=`echo ' + self._taskId + '`\n'
287	>	txt += 'echo "MonitorJobID=`echo $MonitorJobID`" | tee -a $RUNTIME_AREA/$repo \n'
288	>	txt += 'echo "SyncGridJobId=`echo $SyncGridJobId`" | tee -a $RUNTIME_AREA/$repo \n'
289	>	txt += 'echo "MonitorID=`echo $MonitorID`" | tee -a $RUNTIME_AREA/$repo\n'
290	>
291	>	txt += 'echo "middleware discovery " \n'
292	>	txt += 'if [ $GRID3_APP_DIR ]; then\n'
293	>	txt += '    middleware=OSG \n'
294	>	txt += '    echo "SyncCE=`echo $EDG_WL_LOG_DESTINATION`" | tee -a $RUNTIME_AREA/$repo \n'
295	>	txt += '    echo "GridFlavour=`echo $middleware`" | tee -a $RUNTIME_AREA/$repo \n'
296	>	txt += '    echo "middleware =$middleware" \n'
297	>	txt += 'elif [ $OSG_APP ]; then \n'
298	>	txt += '    middleware=OSG \n'
299	>	txt += '    echo "SyncCE=`echo $EDG_WL_LOG_DESTINATION`" | tee -a $RUNTIME_AREA/$repo \n'
300	>	txt += '    echo "GridFlavour=`echo $middleware`" | tee -a $RUNTIME_AREA/$repo \n'
301	>	txt += '    echo "middleware =$middleware" \n'
302	>	txt += 'elif [ $VO_CMS_SW_DIR ]; then \n'
303	>	txt += '    middleware=LCG \n'
304	>	txt += '    echo "SyncCE=`edg-brokerinfo getCE`" | tee -a $RUNTIME_AREA/$repo \n'
305	>	txt += '    echo "GridFlavour=`echo $middleware`" | tee -a $RUNTIME_AREA/$repo \n'
306	>	txt += '    echo "middleware =$middleware" \n'
307	>	txt += 'else \n'
308	>	txt += '    echo "SET_CMS_ENV 10030 ==> middleware not identified" \n'
309	>	txt += '    echo "JOB_EXIT_STATUS = 10030" \n'
310	>	txt += '    echo "JobExitCode=10030" | tee -a $RUNTIME_AREA/$repo \n'
311	>	txt += '    dumpStatus $RUNTIME_AREA/$repo \n'
312	>	txt += '    rm -f $RUNTIME_AREA/$repo \n'
313	>	txt += '    echo "MonitorJobID=`echo $MonitorJobID`" | tee -a $RUNTIME_AREA/$repo \n'
314	>	txt += '    echo "MonitorID=`echo $MonitorID`" | tee -a $RUNTIME_AREA/$repo\n'
315	>	txt += '    exit 1 \n'
316	>	txt += 'fi \n'
317	>
318	>	txt += '# report first time to DashBoard \n'
319	>	txt += 'dumpStatus $RUNTIME_AREA/$repo \n'
320	>	txt += 'rm -f $RUNTIME_AREA/$repo \n'
321	>	txt += 'echo "MonitorJobID=`echo $MonitorJobID`" | tee -a $RUNTIME_AREA/$repo \n'
322	>	txt += 'echo "MonitorID=`echo $MonitorID`" | tee -a $RUNTIME_AREA/$repo\n'
323	>
324	>	txt += '\n\n'
325	>
326	>	if int(self.copy_data) == 1:
327	>	if self.SE:
328	>	txt += 'export SE='+self.SE+'\n'
329	>	txt += 'echo "SE = $SE"\n'
330	>	if self.SE_PATH:
331	>	if ( self.SE_PATH[-1] != '/' ) : self.SE_PATH = self.SE_PATH + '/'
332	>	txt += 'export SE_PATH='+self.SE_PATH+'\n'
333	>	txt += 'echo "SE_PATH = $SE_PATH"\n'
334	>
335	>	txt += 'export VO='+self.VO+'\n'
336	>	### add some line for LFC catalog setting
337	>	txt += 'if [ $middleware == LCG ]; then \n'
338	>	txt += '    if [[ $LCG_CATALOG_TYPE != \''+self.lcg_catalog_type+'\' ]]; then\n'
339	>	txt += '        export LCG_CATALOG_TYPE='+self.lcg_catalog_type+'\n'
340	>	txt += '    fi\n'
341	>	txt += '    if [[ $LFC_HOST != \''+self.lfc_host+'\' ]]; then\n'
342	>	txt += '        export LFC_HOST='+self.lfc_host+'\n'
343	>	txt += '    fi\n'
344	>	txt += '    if [[ $LFC_HOME != \''+self.lfc_home+'\' ]]; then\n'
345	>	txt += '        export LFC_HOME='+self.lfc_home+'\n'
346	>	txt += '    fi\n'
347	>	txt += 'elif [ $middleware == OSG ]; then\n'
348	>	txt += '    echo "LFC catalog setting to be implemented for OSG"\n'
349	>	txt += 'fi\n'
350	>	#####
351	>	if int(self.register_data) == 1:
352	>	txt += 'if [ $middleware == LCG ]; then \n'
353	>	txt += '    export LFN='+self.LFN+'\n'
354	>	txt += '    lfc-ls $LFN\n'
355	>	txt += '    result=$?\n'
356	>	txt += '    echo $result\n'
357	>	### creation of LFN dir in LFC catalog, under /grid/cms dir
358	>	txt += '    if [ $result != 0 ]; then\n'
359	>	txt += '       lfc-mkdir $LFN\n'
360	>	txt += '       result=$?\n'
361	>	txt += '       echo $result\n'
362	>	txt += '    fi\n'
363	>	txt += 'elif [ $middleware == OSG ]; then\n'
364	>	txt += '    echo " Files registration to be implemented for OSG"\n'
365	>	txt += 'fi\n'
366	>	txt += '\n'
367	>
368	>	if self.VO:
369	>	txt += 'export VO='+self.VO+'\n'
370	>	if self.LFN:
371	>	txt += 'if [ $middleware == LCG ]; then \n'
372	>	txt += '    export LFN='+self.LFN+'\n'
373	>	txt += 'fi\n'
374	>	txt += '\n'
375	>
376	>	txt += 'if [ $middleware == LCG ]; then\n'
377	>	txt += '    CloseCEs=`edg-brokerinfo getCE`\n'
378	>	txt += '    echo "CloseCEs = $CloseCEs"\n'
379	>	txt += '    CE=`echo $CloseCEs | sed -e "s/:.*//"`\n'
380	>	txt += '    echo "CE = $CE"\n'
381	>	txt += 'elif [ $middleware == OSG ]; then \n'
382	>	txt += '    if [ $OSG_JOB_CONTACT ]; then \n'
383	>	txt += '        CE=`echo $OSG_JOB_CONTACT | /usr/bin/awk -F\/ \'{print $1}\'` \n'
384	>	txt += '    else \n'
385	>	txt += '        echo "SET_CMS_ENV 10099 ==> OSG mode: ERROR in setting CE name from OSG_JOB_CONTACT" \n'
386	>	txt += '        echo "JOB_EXIT_STATUS = 10099" \n'
387	>	txt += '        echo "JobExitCode=10099" | tee -a $RUNTIME_AREA/$repo \n'
388	>	txt += '        dumpStatus $RUNTIME_AREA/$repo \n'
389	>	txt += '        rm -f $RUNTIME_AREA/$repo \n'
390	>	txt += '        echo "MonitorJobID=`echo $MonitorJobID`" | tee -a $RUNTIME_AREA/$repo \n'
391	>	txt += '        echo "MonitorID=`echo $MonitorID`" | tee -a $RUNTIME_AREA/$repo\n'
392	>	txt += '        exit 1 \n'
393	>	txt += '    fi \n'
394	>	txt += 'fi \n'
395	>
396		return txt
397
398	<	def loggingInfo(self, nj):
398	>	def wsCopyInput(self):
399		"""
400	<	retrieve the logging info from logging and bookkeeping and return it
400	>	Copy input data from SE to WN
401		"""
402	<	id = common.jobDB.jobId(nj)
403	<	edg_ui_cfg_opt = ''
404	<	if self.edg_config:
405	<	edg_ui_cfg_opt = ' -c ' + self.edg_config + ' '
406	<	cmd = 'edg-job-get-logging-info -v 2 ' + edg_ui_cfg_opt + id
407	<	print cmd
408	<	myCmd = os.popen(cmd)
409	<	cmd_out = myCmd.readlines()
410	<	myCmd.close()
411	<	return cmd_out
402	>	txt = ''
403	>	if not self.copy_input_data: return txt
404	>
405	>	## OLI_Daniele deactivate for OSG (wait for LCG UI installed on OSG)
406	>	txt += 'if [ $middleware == OSG ]; then\n'
407	>	txt += '   #\n'
408	>	txt += '   #   Copy Input Data from SE to this WN deactivated in OSG mode\n'
409	>	txt += '   #\n'
410	>	txt += '   echo "Copy Input Data from SE to this WN deactivated in OSG mode"\n'
411	>	txt += 'elif [ $middleware == LCG ]; then \n'
412	>	txt += '   #\n'
413	>	txt += '   #   Copy Input Data from SE to this WN\n'
414	>	txt += '   #\n'
415	>	### changed by georgia (put a loop copying more than one input files per jobs)
416	>	txt += '   for input_file in $cur_file_list \n'
417	>	txt += '   do \n'
418	>	txt += '      lcg-cp --vo $VO --verbose -t 1200 lfn:$input_lfn/$input_file file:`pwd`/$input_file 2>&1\n'
419	>	txt += '      copy_input_exit_status=$?\n'
420	>	txt += '      echo "COPY_INPUT_EXIT_STATUS = $copy_input_exit_status"\n'
421	>	txt += '      if [ $copy_input_exit_status -ne 0 ]; then \n'
422	>	txt += '         echo "Problems with copying to WN" \n'
423	>	txt += '      else \n'
424	>	txt += '         echo "input copied into WN" \n'
425	>	txt += '      fi \n'
426	>	txt += '   done \n'
427	>	### copy a set of PU ntuples (same for each jobs -- but accessed randomly)
428	>	txt += '   for file in $cur_pu_list \n'
429	>	txt += '   do \n'
430	>	txt += '      lcg-cp --vo $VO --verbose -t 1200 lfn:$pu_lfn/$file file:`pwd`/$file 2>&1\n'
431	>	txt += '      copy_input_pu_exit_status=$?\n'
432	>	txt += '      echo "COPY_INPUT_PU_EXIT_STATUS = $copy_input_pu_exit_status"\n'
433	>	txt += '      if [ $copy_input_pu_exit_status -ne 0 ]; then \n'
434	>	txt += '         echo "Problems with copying pu to WN" \n'
435	>	txt += '      else \n'
436	>	txt += '         echo "input pu files copied into WN" \n'
437	>	txt += '      fi \n'
438	>	txt += '   done \n'
439	>	txt += '   \n'
440	>	txt += '   ### Check SCRATCH space available on WN : \n'
441	>	txt += '   df -h \n'
442	>	txt += 'fi \n'
443	>
444	>	return txt
445
446	<	def listMatch(self, nj):
446	>	def wsCopyOutput(self):
447		"""
448	<	Check the compatibility of available resources
448	>	Write a CopyResults part of a job script, e.g.
449	>	to copy produced output into a storage element.
450		"""
451	<	jdl = common.job_list[nj].jdlFilename()
452	<	edg_ui_cfg_opt = ''
453	<	if self.edg_config:
454	<	edg_ui_cfg_opt = ' -c ' + self.edg_config + ' '
455	<	if self.edg_config_vo:
456	<	edg_ui_cfg_opt += ' --config-vo ' + self.edg_config_vo + ' '
457	<	cmd = 'edg-job-list-match ' + edg_ui_cfg_opt + jdl
458	<	myCmd = os.popen(cmd)
459	<	cmd_out = myCmd.readlines()
460	<	myCmd.close()
461	<	return self.parseListMatch_(cmd_out, jdl)
462	<
463	<	def parseListMatch_(self, out, jdl):
464	<	reComment = re.compile( r'^\**$' )
465	<	reEmptyLine = re.compile( r'^$' )
466	<	reVO = re.compile( r'Selected Virtual Organisation name.*' )
467	<	reCE = re.compile( r'CEId' )
468	<	reNO = re.compile( r'No Computing Element matching' )
469	<	reRB = re.compile( r'Connecting to host' )
470	<	next = 0
471	<	CEs=[]
472	<	Match=0
473	<	for line in out:
474	<	line = line.strip()
475	<	#print line
476	<	if reComment.match( line ):
477	<	next = 0
478	<	continue
479	<	if reEmptyLine.match(line):
480	<	continue
481	<	if reVO.match( line ):
482	<	VO =line.split()[-1]
483	<	common.logger.debug(5, 'VO           :'+VO)
484	<	pass
485	<	if reRB.match( line ):
486	<	RB =line.split()[3]
487	<	common.logger.debug(5, 'Using RB     :'+RB)
488	<	pass
489	<	if reCE.search( line ):
490	<	next = 1
491	<	continue
492	<	if next:
493	<	CE=line.split(':')[0]
494	<	CEs.append(CE)
495	<	common.logger.debug(5, 'Matched CE   :'+CE)
496	<	Match=Match+1
497	<	pass
498	<	if reNO.match( line ):
499	<	common.logger.debug(5,line)
500	<	self.noMatchFound_(jdl)
501	<	Match=0
502	<	pass
503	<	return Match
451	>	txt = ''
452	>	if int(self.copy_data) == 1:
453	>	txt += '#\n'
454	>	txt += '#   Copy output to SE = $SE\n'
455	>	txt += '#\n'
456	>	txt += '    if [ $middleware == OSG ]; then\n'
457	>	txt += '        echo "X509_USER_PROXY = $X509_USER_PROXY"\n'
458	>	txt += '        echo "source $OSG_APP/glite/setup_glite_ui.sh"\n'
459	>	txt += '        source $OSG_APP/glite/setup_glite_ui.sh\n'
460	>	txt += '        export X509_CERT_DIR=$OSG_APP/glite/etc/grid-security/certificates\n'
461	>	txt += '        echo "export X509_CERT_DIR=$X509_CERT_DIR"\n'
462	>	txt += '    fi \n'
463	>
464	>	txt += '    for out_file in $file_list ; do\n'
465	>	txt += '        echo "Trying to copy output file to $SE using srmcp"\n'
466	>	txt += '        echo "mkdir -p $HOME/.srmconfig"\n'
467	>	txt += '        mkdir -p $HOME/.srmconfig\n'
468	>	txt += '        if [ $middleware == LCG ]; then\n'
469	>	txt += '           echo "srmcp -retry_num 3 -retry_timeout 480000 file:////`pwd`/$out_file srm://${SE}:8443${SE_PATH}$out_file"\n'
470	>	txt += '           exitstring=`srmcp -retry_num 3 -retry_timeout 480000 file:////\`pwd\`/$out_file srm://${SE}:8443${SE_PATH}$out_file 2>&1`\n'
471	>	txt += '        elif [ $middleware == OSG ]; then\n'
472	>	txt += '           echo "srmcp -retry_num 3 -retry_timeout 240000 -x509_user_trusted_certificates $X509_CERT_DIR file:////`pwd`/$out_file srm://${SE}:8443${SE_PATH}$out_file"\n'
473	>	txt += '           exitstring=`srmcp -retry_num 3 -retry_timeout 240000 -x509_user_trusted_certificates $X509_CERT_DIR file:////\`pwd\`/$out_file srm://${SE}:8443${SE_PATH}$out_file 2>&1`\n'
474	>	txt += '        fi \n'
475	>	txt += '        copy_exit_status=$?\n'
476	>	txt += '        echo "COPY_EXIT_STATUS for srmcp = $copy_exit_status"\n'
477	>	txt += '        echo "STAGE_OUT = $copy_exit_status"\n'
478	>
479	>	txt += '        if [ $copy_exit_status -ne 0 ]; then\n'
480	>	txt += '            echo "Possible problem with SE = $SE"\n'
481	>	txt += '            echo "StageOutExitStatus = 198" | tee -a $RUNTIME_AREA/$repo\n'
482	>	txt += '            echo "StageOutExitStatusReason = $exitstring" | tee -a $RUNTIME_AREA/$repo\n'
483	>	txt += '            echo "srmcp failed, attempting lcg-cp."\n'
484	>	if common.logger.debugLevel() >= 5:
485	>	txt += '            echo "lcg-cp --vo $VO -t 2400 --verbose file://`pwd`/$out_file gsiftp://${SE}${SE_PATH}$out_file"\n'
486	>	txt += '            exitstring=`lcg-cp --vo $VO -t 2400 --verbose file://\`pwd\`/$out_file gsiftp://${SE}${SE_PATH}$out_file 2>&1`\n'
487	>	else:
488	>	txt += '            echo "lcg-cp --vo $VO -t 2400 file://`pwd`/$out_file gsiftp://${SE}${SE_PATH}$out_file"\n'
489	>	txt += '            exitstring=`lcg-cp --vo $VO -t 2400 file://\`pwd\`/$out_file gsiftp://${SE}${SE_PATH}$out_file 2>&1`\n'
490	>	txt += '            copy_exit_status=$?\n'
491	>	txt += '            echo "COPY_EXIT_STATUS for lcg-cp = $copy_exit_status"\n'
492	>	txt += '            echo "STAGE_OUT = $copy_exit_status"\n'
493	>
494	>	txt += '            if [ $copy_exit_status -ne 0 ]; then\n'
495	>	txt += '               echo "Problems with SE = $SE"\n'
496	>	txt += '               echo "StageOutExitStatus = 198" | tee -a $RUNTIME_AREA/$repo\n'
497	>	txt += '               echo "StageOutExitStatusReason = $exitstring" | tee -a $RUNTIME_AREA/$repo\n'
498	>	txt += '               echo "srmcp and lcg-cp and failed!"\n'
499	>	txt += '            else\n'
500	>	txt += '               echo "StageOutSE = $SE" | tee -a $RUNTIME_AREA/$repo\n'
501	>	txt += '               echo "StageOutCatalog = " | tee -a $RUNTIME_AREA/$repo\n'
502	>	txt += '               echo "output copied into $SE/$SE_PATH directory"\n'
503	>	txt += '               echo "StageOutExitStatus = 0" | tee -a $RUNTIME_AREA/$repo\n'
504	>	txt += '               echo "lcg-cp succeeded"\n'
505	>	txt += '            fi\n'
506	>	txt += '        else\n'
507	>	txt += '            echo "StageOutSE = $SE" | tee -a $RUNTIME_AREA/$repo\n'
508	>	txt += '            echo "StageOutCatalog = " | tee -a $RUNTIME_AREA/$repo\n'
509	>	txt += '            echo "output copied into $SE/$SE_PATH directory"\n'
510	>	txt += '            echo "StageOutExitStatus = 0" | tee -a $RUNTIME_AREA/$repo\n'
511	>	txt += '            echo "srmcp succeeded"\n'
512	>	txt += '         fi\n'
513	>	txt += '     done\n'
514	>	return txt
515
516	<	def noMatchFound_(self, jdl):
517	<	reReq = re.compile( r'Requirements' )
518	<	reString = re.compile( r'"\S*"' )
519	<	f = file(jdl,'r')
149	<	for line in f.readlines():
150	<	line= line.strip()
151	<	if reReq.match(line):
152	<	for req in reString.findall(line):
153	<	if re.search("VO",req):
154	<	common.logger.message( "SW required: "+req)
155	<	continue
156	<	if re.search('"\d+',req):
157	<	common.logger.message("Other req  : "+req)
158	<	continue
159	<	common.logger.message( "CE required: "+req)
160	<	break
161	<	pass
162	<	raise CrabException("No compatible resources found!")
163	<
164	<	def submit(self, nj):
165	<	"""
166	<	Submit one EDG job.
167	<	"""
168	<
169	<	jid = None
170	<	jdl = common.job_list[nj].jdlFilename()
171	<	id_tmp = tempfile.mktemp()
172	<	edg_ui_cfg_opt = ' '
173	<	if self.edg_config:
174	<	edg_ui_cfg_opt = ' -c ' + self.edg_config + ' '
175	<	if self.edg_config_vo:
176	<	edg_ui_cfg_opt += ' --config-vo ' + self.edg_config_vo + ' '
177	<	cmd = 'edg-job-submit -o ' + id_tmp + edg_ui_cfg_opt + jdl
178	<	cmd_out = runCommand(cmd)
179	<	if cmd_out != None:
180	<	idfile = open(id_tmp)
181	<	jid_line = idfile.readline()
182	<	while jid_line[0] == '#':
183	<	jid_line = idfile.readline()
184	<	pass
185	<	jid = string.strip(jid_line)
186	<	os.unlink(id_tmp)
187	<	pass
188	<	return jid
516	>	def wsRegisterOutput(self):
517	>	"""
518	>	Returns part of a job script which does scheduler-specific work.
519	>	"""
520
521	<	def queryStatus(self, id):
522	<	""" Query a status of the job with id """
523	<	cmd0 = 'edg-job-status '
524	<	cmd = cmd0 + id
521	>	txt = ''
522	>	if int(self.register_data) == 1:
523	>	## OLI_Daniele deactivate for OSG (wait for LCG UI installed on OSG)
524	>	txt += 'if [ $middleware == OSG ]; then\n'
525	>	txt += '   #\n'
526	>	txt += '   #   Register output to LFC deactivated in OSG mode\n'
527	>	txt += '   #\n'
528	>	txt += '   echo "Register output to LFC deactivated in OSG mode"\n'
529	>	txt += 'elif [ $middleware == LCG ]; then \n'
530	>	txt += '#\n'
531	>	txt += '#  Register output to LFC\n'
532	>	txt += '#\n'
533	>	txt += '   if [ $copy_exit_status -eq 0 ]; then\n'
534	>	txt += '      for out_file in $file_list ; do\n'
535	>	txt += '         echo "Trying to register the output file into LFC"\n'
536	>	txt += '         echo "lcg-rf -l $LFN/$out_file --vo $VO -t 1200 sfn://$SE$SE_PATH/$out_file 2>&1"\n'
537	>	txt += '         lcg-rf -l $LFN/$out_file --vo $VO -t 1200 sfn://$SE$SE_PATH/$out_file 2>&1 \n'
538	>	txt += '         register_exit_status=$?\n'
539	>	txt += '         echo "REGISTER_EXIT_STATUS = $register_exit_status"\n'
540	>	txt += '         echo "STAGE_OUT = $register_exit_status"\n'
541	>	txt += '         if [ $register_exit_status -ne 0 ]; then \n'
542	>	txt += '            echo "Problems with the registration to LFC" \n'
543	>	txt += '            echo "Try with srm protocol" \n'
544	>	txt += '            echo "lcg-rf -l $LFN/$out_file --vo $VO -t 1200 srm://$SE$SE_PATH/$out_file 2>&1"\n'
545	>	txt += '            lcg-rf -l $LFN/$out_file --vo $VO -t 1200 srm://$SE$SE_PATH/$out_file 2>&1 \n'
546	>	txt += '            register_exit_status=$?\n'
547	>	txt += '            echo "REGISTER_EXIT_STATUS = $register_exit_status"\n'
548	>	txt += '            echo "STAGE_OUT = $register_exit_status"\n'
549	>	txt += '            if [ $register_exit_status -ne 0 ]; then \n'
550	>	txt += '               echo "Problems with the registration into LFC" \n'
551	>	txt += '            fi \n'
552	>	txt += '         else \n'
553	>	txt += '            echo "output registered to LFC"\n'
554	>	txt += '         fi \n'
555	>	txt += '         echo "StageOutExitStatus = $register_exit_status" | tee -a $RUNTIME_AREA/$repo\n'
556	>	txt += '      done\n'
557	>	txt += '   else \n'
558	>	txt += '      echo "Trying to copy output file to CloseSE"\n'
559	>	txt += '      CLOSE_SE=`edg-brokerinfo getCloseSEs | head -1`\n'
560	>	txt += '      for out_file in $file_list ; do\n'
561	>	txt += '         echo "lcg-cr -v -l lfn:${LFN}/$out_file -d $CLOSE_SE -P $LFN/$out_file --vo $VO file://$RUNTIME_AREA/$out_file 2>&1" \n'
562	>	txt += '         lcg-cr -v -l lfn:${LFN}/$out_file -d $CLOSE_SE -P $LFN/$out_file --vo $VO file://$RUNTIME_AREA/$out_file 2>&1 \n'
563	>	txt += '         register_exit_status=$?\n'
564	>	txt += '         echo "REGISTER_EXIT_STATUS = $register_exit_status"\n'
565	>	txt += '         echo "STAGE_OUT = $register_exit_status"\n'
566	>	txt += '         if [ $register_exit_status -ne 0 ]; then \n'
567	>	txt += '            echo "Problems with CloseSE or Catalog" \n'
568	>	txt += '         else \n'
569	>	txt += '            echo "The program was successfully executed"\n'
570	>	txt += '            echo "SE = $CLOSE_SE"\n'
571	>	txt += '            echo "LFN for the file is LFN=${LFN}/$out_file"\n'
572	>	txt += '         fi \n'
573	>	txt += '         echo "StageOutExitStatus = $register_exit_status" | tee -a $RUNTIME_AREA/$repo\n'
574	>	txt += '      done\n'
575	>	txt += '   fi \n'
576	>	txt += '   exit_status=$register_exit_status\n'
577	>	txt += 'fi \n'
578	>	return txt
579	>
580	>	def loggingInfo(self, id):
581	>	"""
582	>	retrieve the logging info from logging and bookkeeping and return it
583	>	"""
584	>	self.checkProxy()
585	>	cmd = 'edg-job-get-logging-info -v 2 ' + id
586		cmd_out = runCommand(cmd)
587	<	if cmd_out == None:
196	<	common.logger.message('Error. No output from `'+cmd+'`')
197	<	return None
198	<	# parse output
199	<	status_prefix = 'Current Status:'
200	<	status_index = string.find(cmd_out, status_prefix)
201	<	if status_index == -1:
202	<	common.logger.message('Error. Bad output of `'+cmd0+'`:\n'+cmd_out)
203	<	return None
204	<	status = cmd_out[(status_index+len(status_prefix)):]
205	<	nl = string.find(status,'\n')
206	<	status = string.strip(status[0:nl])
207	<	return status
587	>	return cmd_out
588
589		def queryDetailedStatus(self, id):
590		""" Query a detailed status of the job with id """
#	Line 212 | Line 592 | class SchedulerEdg(Scheduler):
592		cmd_out = runCommand(cmd)
593		return cmd_out
594
595	<	def getOutput(self, id):
595	>	##### FEDE ######
596	>	def findSites_(self, n):
597	>	itr4 =[]
598	>	sites = common.jobDB.destination(n)
599	>	if len(sites)>0 and sites[0]=="Any":
600	>	return itr4
601	>	itr = ''
602	>	if sites != [""]:#CarlosDaniele
603	>	for site in sites:
604	>	#itr = itr + 'target.GlueSEUniqueID==&quot;'+site+'&quot; || '
605	>	itr = itr + 'target.GlueSEUniqueID=="'+site+'" || '
606	>	itr = itr[0:-4]
607	>	itr4.append( itr )
608	>	return itr4
609	>
610	>	def createXMLSchScript(self, nj, argsList):
611	>
612	>	"""
613	>	Create a XML-file for BOSS4.
614	>	"""
615	>	#      job = common.job_list[nj]
616	>	"""
617	>	INDY
618	>	[begin] FIX-ME:
619	>	I would pass jobType instead of job
620	>	"""
621	>	index = nj - 1
622	>	job = common.job_list[index]
623	>	jbt = job.type()
624	>
625	>	inp_sandbox = jbt.inputSandbox(index)
626	>	out_sandbox = jbt.outputSandbox(index)
627		"""
628	<	Get output for a finished job with id.
218	<	Returns the name of directory with results.
628	>	[end] FIX-ME
629		"""
630
631	<	cmd = 'edg-job-get-output --dir ' + common.work_space.resDir() + ' ' + id
632	<	cmd_out = runCommand(cmd)
631	>
632	>	title = '<?xml version="1.0" encoding="UTF-8" standalone="no"?>\n'
633	>	jt_string = ''
634	>
635	>	xml_fname = str(self.jobtypeName)+'.xml'
636	>	xml = open(common.work_space.shareDir()+'/'+xml_fname, 'a')
637
638	<	# Determine the output directory name
639	<	dir = common.work_space.resDir()
640	<	dir += os.getlogin()
641	<	dir += '_' + os.path.basename(id)
642	<	return dir
643	<
644	<	def cancel(self, id):
645	<	""" Cancel the EDG job with id """
646	<	cmd = 'edg-job-cancel --noint ' + id
647	<	cmd_out = runCommand(cmd)
648	<	return cmd_out
638	>	#TaskName
639	>	dir = string.split(common.work_space.topDir(), '/')
640	>	taskName = dir[len(dir)-2]
641	>
642	>	to_writeReq = ''
643	>	to_write = ''
644	>
645	>	req=' '
646	>	req = req + jbt.getRequirements()
647	>
648	>	if self.EDG_requirements:
649	>	if (req == ' '):
650	>	req = req + self.EDG_requirements
651	>	else:
652	>	req = req +  ' && ' + self.EDG_requirements
653	>	if self.EDG_ce_white_list:
654	>	ce_white_list = string.split(self.EDG_ce_white_list,',')
655	>	for i in range(len(ce_white_list)):
656	>	if i == 0:
657	>	if (req == ' '):
658	>	req = req + '((RegExp("' + ce_white_list[i] + '", other.GlueCEUniqueId))'
659	>	else:
660	>	req = req +  ' && ((RegExp("' + ce_white_list[i] + '", other.GlueCEUniqueId))'
661	>	pass
662	>	else:
663	>	req = req +  ' || (RegExp("' + ce_white_list[i] + '", other.GlueCEUniqueId))'
664	>	req = req + ')'
665	>
666	>	if self.EDG_ce_black_list:
667	>	ce_black_list = string.split(self.EDG_ce_black_list,',')
668	>	for ce in ce_black_list:
669	>	if (req == ' '):
670	>	req = req + '(!RegExp("' + ce + '", other.GlueCEUniqueId))'
671	>	else:
672	>	req = req +  ' && (!RegExp("' + ce + '", other.GlueCEUniqueId))'
673	>	pass
674	>	if self.EDG_clock_time:
675	>	if (req == ' '):
676	>	req = req + 'other.GlueCEPolicyMaxWallClockTime>='+self.EDG_clock_time
677	>	else:
678	>	req = req + ' && other.GlueCEPolicyMaxWallClockTime>='+self.EDG_clock_time
679	>
680	>	if self.EDG_cpu_time:
681	>	if (req == ' '):
682	>	req = req + ' other.GlueCEPolicyMaxCPUTime>='+self.EDG_cpu_time
683	>	else:
684	>	req = req + ' && other.GlueCEPolicyMaxCPUTime>='+self.EDG_cpu_time
685	>
686	>	if ( self.EDG_retry_count ):
687	>	to_write = to_write + 'RetryCount = "'+self.EDG_retry_count+'"\n'
688	>	pass
689
690	<	def checkProxy_(self):
691	<	"""
692	<	Function to check the Globus proxy.
239	<	"""
240	<	cmd = 'grid-proxy-info -timeleft'
241	<	cmd_out = runCommand(cmd)
242	<	ok = 1
243	<	timeleft = -999
244	<	try: timeleft = int(cmd_out)
245	<	except ValueError: ok=0
246	<	except TypeError: ok=0
247	<	if timeleft < 1:  ok=0
248	<
249	<	if ok==0:
250	<	msg = 'No valid proxy found !\n'
251	<	msg += "Please do 'grid-proxy-init'."
252	<	raise CrabException(msg)
253	<	return
254	<
255	<	def createJDL(self, nj):
256	<	"""
257	<	Create a JDL-file for EDG.
258	<	"""
690	>	if ( self.EDG_shallow_retry_count ):
691	>	to_write = to_write + 'ShallowRetryCount = "'+self.EDG_shallow_retry_count+'"\n'
692	>	pass
693
694	<	job = common.job_list[nj]
695	<	jbt = job.type()
696	<	#        jbt.loadJobInfo()
697	<	inp_sandbox = jbt.inputSandbox(nj)
698	<	out_sandbox = jbt.outputSandbox(nj)
699	<	inp_storage_subdir = ''#jbt.inputStorageSubdir()
694	>	to_write = to_write + 'MyProxyServer = "&quot;' + self.proxyServer + '&quot;"\n'
695	>	to_write = to_write + 'VirtualOrganisation = "&quot;' + self.VO + '&quot;"\n'
696	>
697	>	#TaskName
698	>	dir = string.split(common.work_space.topDir(), '/')
699	>	taskName = dir[len(dir)-2]
700	>
701	>	xml.write(str(title))
702	>	xml.write('<task name="' +str(taskName)+'" sub_path="' + common.work_space.bossCache() + '">\n')
703	>	xml.write(jt_string)
704
705	<	title = '# This JDL was generated by '+\
706	<	common.prog_name+' (version '+common.prog_version_str+')\n'
707	<	jt_string = ''
705	>	if (to_write != ''):
706	>	xml.write('<extraTags\n')
707	>	xml.write(to_write)
708	>	xml.write('/>\n')
709	>	pass
710	>
711	>	xml.write('<iterator>\n')
712	>	xml.write('\t<iteratorRule name="ITR1">\n')
713	>	xml.write('\t\t<ruleElement> 1:'+ str(nj) + ' </ruleElement>\n')
714	>	xml.write('\t</iteratorRule>\n')
715	>	xml.write('\t<iteratorRule name="ITR2">\n')
716	>	for arg in argsList:
717	>	xml.write('\t\t<ruleElement> <![CDATA[\n'+ arg + '\n\t\t]]> </ruleElement>\n')
718	>	pass
719	>	xml.write('\t</iteratorRule>\n')
720	>	#print jobList
721	>	xml.write('\t<iteratorRule name="ITR3">\n')
722	>	xml.write('\t\t<ruleElement> 1:'+ str(nj) + ':1:6 </ruleElement>\n')
723	>	xml.write('\t</iteratorRule>\n')
724	>
725	>	'''
726	>	indy: here itr4
727	>	'''
728
271	–	SPL = inp_storage_subdir
272	–	if ( SPL and SPL[-1] != '/' ) : SPL = SPL + '/'
729
730	<	jdl_fname = job.jdlFilename()
731	<	jdl = open(jdl_fname, 'w')
276	<	jdl.write(title)
730	>	xml.write('<chain scheduler="'+str(self.schedulerName)+'">\n')
731	>	xml.write(jt_string)
732
733	<	script = job.scriptFilename()
279	<	jdl.write('Executable = "' + os.path.basename(script) +'";\n')
280	<	jdl.write(jt_string)
733	>	#executable
734
735	<	inp_box = 'InputSandbox = { '
736	<	inp_box = inp_box + '"' + script + '",'
735	>	"""
736	>	INDY
737	>	script depends on jobType: it should be probably get in a different way
738	>	"""
739	>	script = job.scriptFilename()
740	>	xml.write('<program>\n')
741	>	xml.write('<exec> ' + os.path.basename(script) +' </exec>\n')
742	>	xml.write(jt_string)
743	>
744	>	xml.write('<args> <![CDATA[\n _ITR2_ \n]]> </args>\n')
745	>	xml.write('<program_types> crabjob </program_types>\n')
746	>	inp_box = common.work_space.pathForTgz() + 'job/' + jbt.scriptName + ','
747
748		if inp_sandbox != None:
749		for fl in inp_sandbox:
750	<	inp_box = inp_box + ' "' + fl + '",'
750	>	inp_box = inp_box + '' + fl + ','
751		pass
752		pass
753
754	<	#if common.use_jam:
755	<	#   inp_box = inp_box+' "'+common.bin_dir+'/'+common.run_jam+'",'
756	<
757	<	for addFile in jbt.additional_inbox_files:
758	<	addFile = os.path.abspath(addFile)
759	<	inp_box = inp_box+' "'+addFile+'",'
297	<	pass
754	>	if (not jbt.additional_inbox_files == []):
755	>	inp_box = inp_box + ','
756	>	for addFile in jbt.additional_inbox_files:
757	>	addFile = os.path.abspath(addFile)
758	>	inp_box = inp_box+''+addFile+','
759	>	pass
760
761		if inp_box[-1] == ',' : inp_box = inp_box[:-1]
762	<	inp_box = inp_box + ' };\n'
763	<	jdl.write(inp_box)
762	>	inp_box = '<infiles> <![CDATA[\n' + inp_box + '\n]]> </infiles>\n'
763	>	xml.write(inp_box)
764	>
765	>	base = jbt.name()
766	>	stdout = base + '__ITR3_.stdout'
767	>	stderr = base + '__ITR3_.stderr'
768	>
769	>	xml.write('<stderr> ' + stderr + '</stderr>\n')
770	>	xml.write('<stdout> ' + stdout + '</stdout>\n')
771	>
772	>
773	>	out_box = stdout + ',' + \
774	>	stderr + ',.BrokerInfo,'
775	>
776	>	"""
777	>	if int(self.return_data) == 1:
778	>	if out_sandbox != None:
779	>	for fl in out_sandbox:
780	>	out_box = out_box + '' + fl + ','
781	>	pass
782	>	pass
783	>	pass
784	>	"""
785
786	<	jdl.write('StdOutput     = "' + job.stdout() + '";\n')
787	<	jdl.write('StdError      = "' + job.stderr() + '";\n')
786	>	"""
787	>	INDY
788	>	something similar should be also done for infiles (if it makes sense!)
789	>	"""
790	>	# Stuff to be returned _always_ via sandbox
791	>	for fl in jbt.output_file_sandbox:
792	>	out_box = out_box + '' + jbt.numberFile_(fl, '_ITR1_') + ','
793	>	pass
794	>	pass
795
796	<	#if common.flag_return_data :
797	<	#    for fl in job.outputDataFiles():
798	<	#        out_box = out_box + ' "' + fl + '",'
799	<	#        pass
310	<	#    pass
311	<
312	<	out_box = 'OutputSandbox = { '
313	<	if out_sandbox != None:
314	<	for fl in out_sandbox:
315	<	out_box = out_box + ' "' + fl + '",'
796	>	# via sandbox iif required return_data
797	>	if int(self.return_data) == 1:
798	>	for fl in jbt.output_file:
799	>	out_box = out_box + '' + jbt.numberFile_(fl, '_ITR1_') + ','
800		pass
801		pass
802
803		if out_box[-1] == ',' : out_box = out_box[:-1]
804	<	out_box = out_box + ' };'
805	<	jdl.write(out_box+'\n')
804	>	out_box = '<outfiles> <![CDATA[\n' + out_box + '\n]]></outfiles>\n'
805	>	xml.write(out_box)
806	>
807	>	xml.write('<BossAttr> crabjob.INTERNAL_ID=_ITR1_ </BossAttr>\n')
808
809	<	# If CloseCE is used ...
810	<	#if common.flag_usecloseCE and job.inputDataFiles():
325	<	#    indata = 'InputData = { '
326	<	#    for fl in job.inputDataFiles():
327	<	#       indata = indata + ' "lfn:' + SPL + fl + '",'
328	<	#    if indata[-1] == ',' : indata = indata[:-1]
329	<	#    indata = indata + ' };'
330	<	#    jdl.write(indata+'\n')
331	<	#    jdl.write('DataAccessProtocol = { "gsiftp" };\n')
332	<
333	<	if common.analisys_common_info['sites']:
334	<	if common.analisys_common_info['sw_version']:
335	<
336	<	req='Requirements = '
337	<	### First ORCA version
338	<	req=req + 'Member("VO-cms-' + \
339	<	common.analisys_common_info['sw_version'] + \
340	<	'", other.GlueHostApplicationSoftwareRunTimeEnvironment)'
341	<	## then sites
342	<	if len(common.analisys_common_info['sites'])>0:
343	<	req = req + ' && ('
344	<	for i in range(len(common.analisys_common_info['sites'])):
345	<	req = req + 'other.GlueCEInfoHostName == "' \
346	<	+ common.analisys_common_info['sites'][i] + '"'
347	<	if ( i < (int(len(common.analisys_common_info['sites']) - 1)) ):
348	<	req = req + ' || '
349	<	req = req + ')'
350	<	## then user requirement
351	<	if self.EDG_requirements:
352	<	req = req +  ' && ' + self.EDG_requirements
353	<	req = req + ';\n'
354	<	jdl.write(req)
809	>	xml.write('</program>\n')
810	>	xml.write('</chain>\n')
811
812	<	jdl.write('VirtualOrganisation = "' + self.VO + '";\n')
812	>	xml.write('</iterator>\n')
813	>	xml.write('</task>\n')
814
815	<	if ( self.EDG_retry_count ):
816	<	jdl.write('RetryCount = '+self.EDG_retry_count+';\n')
815	>	xml.close()
816	>
817	>
818	>	return
819	>
820	>	def checkProxy(self):
821	>	"""
822	>	Function to check the Globus proxy.
823	>	"""
824	>	if (self.proxyValid): return
825	>
826	>	### Just return if asked to do so
827	>	if (self.dontCheckProxy):
828	>	self.proxyValid=1
829	>	return
830	>
831	>	timeleft = -999
832	>	minTimeLeft=10*3600 # in seconds
833	>
834	>	minTimeLeftServer = 100 # in hours
835	>
836	>	mustRenew = 0
837	>	timeLeftLocal = runCommand('voms-proxy-info -timeleft 2>/dev/null')
838	>	timeLeftServer = -999
839	>	if not timeLeftLocal or int(timeLeftLocal) <= 0 or not isInt(timeLeftLocal):
840	>	mustRenew = 1
841	>	else:
842	>	timeLeftServer = runCommand('voms-proxy-info -actimeleft 2>/dev/null | head -1')
843	>	if not timeLeftServer or not isInt(timeLeftServer):
844	>	mustRenew = 1
845	>	elif timeLeftLocal<minTimeLeft or timeLeftServer<minTimeLeft:
846	>	mustRenew = 1
847	>	pass
848	>	pass
849	>
850	>	if mustRenew:
851	>	common.logger.message( "No valid proxy found or remaining time of validity of already existing proxy shorter than 10 hours!\n Creating a user proxy with default length of 192h\n")
852	>	cmd = 'voms-proxy-init -voms '+self.VO
853	>	if self.group:
854	>	cmd += ':/'+self.VO+'/'+self.group
855	>	if self.role:
856	>	cmd += '/role='+self.role
857	>	cmd += ' -valid 192:00'
858	>	try:
859	>	# SL as above: damn it!
860	>	common.logger.debug(10,cmd)
861	>	out = os.system(cmd)
862	>	if (out>0): raise CrabException("Unable to create a valid proxy!\n")
863	>	except:
864	>	msg = "Unable to create a valid proxy!\n"
865	>	raise CrabException(msg)
866		pass
867
868	<	jdl.close()
868	>	## now I do have a voms proxy valid, and I check the myproxy server
869	>	renewProxy = 0
870	>	cmd = 'myproxy-info -d -s '+self.proxyServer
871	>	cmd_out = runCommand(cmd,0,20)
872	>	if not cmd_out:
873	>	common.logger.message('No credential delegated to myproxy server '+self.proxyServer+' will do now')
874	>	renewProxy = 1
875	>	else:
876	>	# if myproxy exist but not long enough, renew
877	>	reTime = re.compile( r'timeleft: (\d+)' )
878	>	#print "<"+str(reTime.search( cmd_out ).group(1))+">"
879	>	if reTime.match( cmd_out ):
880	>	time = reTime.search( line ).group(1)
881	>	if time < minTimeLeftServer:
882	>	renewProxy = 1
883	>	common.logger.message('No credential delegation will expire in '+time+' hours: renew it')
884	>	pass
885	>	pass
886	>
887	>	# if not, create one.
888	>	if renewProxy:
889	>	cmd = 'myproxy-init -d -n -s '+self.proxyServer
890	>	out = os.system(cmd)
891	>	if (out>0):
892	>	raise CrabException("Unable to delegate the proxy to myproxyserver "+self.proxyServer+" !\n")
893	>	pass
894	>
895	>	# cache proxy validity
896	>	self.proxyValid=1
897		return
898	+
899	+	def configOpt_(self):
900	+	edg_ui_cfg_opt = ' '
901	+	if self.edg_config:
902	+	edg_ui_cfg_opt = ' -c ' + self.edg_config + ' '
903	+	if self.edg_config_vo:
904	+	edg_ui_cfg_opt += ' --config-vo ' + self.edg_config_vo + ' '
905	+	return edg_ui_cfg_opt

Diff Legend

–	Removed lines
+	Added lines
<	Changed lines
>	Changed lines