| 1 |
from Scheduler import Scheduler
|
| 2 |
from crab_logger import Logger
|
| 3 |
from crab_exceptions import *
|
| 4 |
from crab_util import *
|
| 5 |
from EdgConfig import *
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| 6 |
import common
|
| 7 |
|
| 8 |
import os, sys, time
|
| 9 |
|
| 10 |
class SchedulerEdg(Scheduler):
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| 11 |
def __init__(self):
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| 12 |
Scheduler.__init__(self,"EDG")
|
| 13 |
self.states = [ "Acl", "cancelReason", "cancelling","ce_node","children", \
|
| 14 |
"children_hist","children_num","children_states","condorId","condor_jdl", \
|
| 15 |
"cpuTime","destination", "done_code","exit_code","expectFrom", \
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"expectUpdate","globusId","jdl","jobId","jobtype", \
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"lastUpdateTime","localId","location", "matched_jdl","network_server", \
|
| 18 |
"owner","parent_job", "reason","resubmitted","rsl","seed",\
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| 19 |
"stateEnterTime","stateEnterTimes","subjob_failed", \
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| 20 |
"user tags" , "status" , "status_code","hierarchy"]
|
| 21 |
return
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| 22 |
|
| 23 |
def configure(self, cfg_params):
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| 24 |
##Addedd Daniele
|
| 25 |
######################################
|
| 26 |
|
| 27 |
SEBlackList = []
|
| 28 |
try:
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| 29 |
tmpBad = string.split(cfg_params['EDG.se_black_list'],',')
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| 30 |
for tmp in tmpBad:
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| 31 |
tmp=string.strip(tmp)
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| 32 |
SEBlackList.append(tmp)
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| 33 |
except KeyError:
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| 34 |
pass
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| 35 |
common.logger.debug(5,'SEBlackList: '+str(SEBlackList))
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| 36 |
self.reSEBlackList=[]
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| 37 |
for bad in SEBlackList:
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| 38 |
self.reSEBlackList.append(re.compile( string.lower(bad) ))
|
| 39 |
|
| 40 |
SEWhiteList = []
|
| 41 |
try:
|
| 42 |
tmpGood = string.split(cfg_params['EDG.se_white_list'],',')
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| 43 |
for tmp in tmpGood:
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| 44 |
tmp=string.strip(tmp)
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| 45 |
SEWhiteList.append(tmp)
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| 46 |
except KeyError:
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| 47 |
pass
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| 48 |
common.logger.debug(5,'SEWhiteList: '+str(SEWhiteList))
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| 49 |
self.reSEWhiteList=[]
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| 50 |
for good in SEWhiteList:
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| 51 |
self.reSEWhiteList.append(re.compile( string.lower(good) ))
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| 52 |
|
| 53 |
|
| 54 |
######################################
|
| 55 |
try:
|
| 56 |
RB=cfg_params["EDG.rb"]
|
| 57 |
self.rb_param_file=self.rb_configure(RB)
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| 58 |
except KeyError:
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| 59 |
self.rb_param_file=''
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| 60 |
pass
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| 61 |
try:
|
| 62 |
self.proxyServer = cfg_params["EDG.proxy_server"]
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| 63 |
except KeyError:
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| 64 |
self.proxyServer = 'myproxy.cern.ch'
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| 65 |
common.logger.debug(5,'Setting myproxy server to '+self.proxyServer)
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| 66 |
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| 67 |
try:
|
| 68 |
self.group = cfg_params["EDG.group"]
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| 69 |
except KeyError:
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| 70 |
self.group = None
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| 71 |
|
| 72 |
try:
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| 73 |
self.role = cfg_params["EDG.role"]
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| 74 |
except KeyError:
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self.role = None
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| 76 |
|
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try: self.LCG_version = cfg_params["EDG.lcg_version"]
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| 78 |
except KeyError: self.LCG_version = '2'
|
| 79 |
|
| 80 |
try:
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| 81 |
self.EDG_ce_black_list = cfg_params['EDG.ce_black_list']
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| 82 |
except KeyError:
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| 83 |
self.EDG_ce_black_list = ''
|
| 84 |
|
| 85 |
try:
|
| 86 |
self.EDG_ce_white_list = cfg_params['EDG.ce_white_list']
|
| 87 |
except KeyError: self.EDG_ce_white_list = ''
|
| 88 |
|
| 89 |
try: self.VO = cfg_params['EDG.virtual_organization']
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| 90 |
except KeyError: self.VO = 'cms'
|
| 91 |
|
| 92 |
try: self.copy_input_data = cfg_params["USER.copy_input_data"]
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| 93 |
except KeyError: self.copy_input_data = 0
|
| 94 |
|
| 95 |
try: self.return_data = cfg_params['USER.return_data']
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| 96 |
except KeyError: self.return_data = 0
|
| 97 |
|
| 98 |
try:
|
| 99 |
self.copy_data = cfg_params["USER.copy_data"]
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| 100 |
if int(self.copy_data) == 1:
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| 101 |
try:
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| 102 |
self.SE = cfg_params['USER.storage_element']
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| 103 |
self.SE_PATH = cfg_params['USER.storage_path']
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except KeyError:
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msg = "Error. The [USER] section does not have 'storage_element'"
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msg = msg + " and/or 'storage_path' entries, necessary to copy the output"
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common.logger.message(msg)
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raise CrabException(msg)
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except KeyError: self.copy_data = 0
|
| 110 |
|
| 111 |
if ( int(self.return_data) == 0 and int(self.copy_data) == 0 ):
|
| 112 |
msg = 'Warning: return_data = 0 and copy_data = 0 ==> your exe output will be lost\n'
|
| 113 |
msg = msg + 'Please modify return_data and copy_data value in your crab.cfg file\n'
|
| 114 |
raise CrabException(msg)
|
| 115 |
|
| 116 |
########### FEDE FOR DBS2 ##############################
|
| 117 |
try:
|
| 118 |
self.publish_data = cfg_params["USER.publish_data"]
|
| 119 |
if int(self.publish_data) == 1:
|
| 120 |
try:
|
| 121 |
self.publish_data_name = cfg_params['USER.publish_data_name']
|
| 122 |
except KeyError:
|
| 123 |
msg = "Error. The [USER] section does not have 'publish_data_name'"
|
| 124 |
raise CrabException(msg)
|
| 125 |
try:
|
| 126 |
tmp = runCommand("voms-proxy-info -identity")
|
| 127 |
tmp = string.split(tmp,'/')
|
| 128 |
reCN=re.compile(r'CN=')
|
| 129 |
for t in tmp:
|
| 130 |
if reCN.match(t):
|
| 131 |
self.UserGridName=string.strip((t.replace('CN=','')).replace(' ',''))
|
| 132 |
|
| 133 |
#self.UserGridName = string.strip(runCommand("voms-proxy-info -identity | awk -F\'CN\' \'{print $2$3$4}\' | tr -d \'=/ \'"))
|
| 134 |
except:
|
| 135 |
msg = "Error. Problem with voms-proxy-info -identity command"
|
| 136 |
raise CrabException(msg)
|
| 137 |
except KeyError: self.publish_data = 0
|
| 138 |
|
| 139 |
if ( int(self.copy_data) == 0 and int(self.publish_data) == 1 ):
|
| 140 |
msg = 'Warning: publish_data = 1 must be used with copy_data = 1\n'
|
| 141 |
msg = msg + 'Please modify copy_data value in your crab.cfg file\n'
|
| 142 |
common.logger.message(msg)
|
| 143 |
raise CrabException(msg)
|
| 144 |
#################################################
|
| 145 |
|
| 146 |
try:
|
| 147 |
self.lfc_host = cfg_params['EDG.lfc_host']
|
| 148 |
except KeyError:
|
| 149 |
msg = "Error. The [EDG] section does not have 'lfc_host' value"
|
| 150 |
msg = msg + " it's necessary to know the LFC host name"
|
| 151 |
common.logger.message(msg)
|
| 152 |
raise CrabException(msg)
|
| 153 |
try:
|
| 154 |
self.lcg_catalog_type = cfg_params['EDG.lcg_catalog_type']
|
| 155 |
except KeyError:
|
| 156 |
msg = "Error. The [EDG] section does not have 'lcg_catalog_type' value"
|
| 157 |
msg = msg + " it's necessary to know the catalog type"
|
| 158 |
common.logger.message(msg)
|
| 159 |
raise CrabException(msg)
|
| 160 |
try:
|
| 161 |
self.lfc_home = cfg_params['EDG.lfc_home']
|
| 162 |
except KeyError:
|
| 163 |
msg = "Error. The [EDG] section does not have 'lfc_home' value"
|
| 164 |
msg = msg + " it's necessary to know the home catalog dir"
|
| 165 |
common.logger.message(msg)
|
| 166 |
raise CrabException(msg)
|
| 167 |
|
| 168 |
try:
|
| 169 |
self.register_data = cfg_params["USER.register_data"]
|
| 170 |
if int(self.register_data) == 1:
|
| 171 |
try:
|
| 172 |
self.LFN = cfg_params['USER.lfn_dir']
|
| 173 |
except KeyError:
|
| 174 |
msg = "Error. The [USER] section does not have 'lfn_dir' value"
|
| 175 |
msg = msg + " it's necessary for LCF registration"
|
| 176 |
common.logger.message(msg)
|
| 177 |
raise CrabException(msg)
|
| 178 |
except KeyError: self.register_data = 0
|
| 179 |
|
| 180 |
if ( int(self.copy_data) == 0 and int(self.register_data) == 1 ):
|
| 181 |
msg = 'Warning: register_data = 1 must be used with copy_data = 1\n'
|
| 182 |
msg = msg + 'Please modify copy_data value in your crab.cfg file\n'
|
| 183 |
common.logger.message(msg)
|
| 184 |
raise CrabException(msg)
|
| 185 |
|
| 186 |
try: self.EDG_requirements = cfg_params['EDG.requirements']
|
| 187 |
except KeyError: self.EDG_requirements = ''
|
| 188 |
|
| 189 |
try: self.EDG_addJdlParam = string.split(cfg_params['EDG.additional_jdl_parameters'],',')
|
| 190 |
except KeyError: self.EDG_addJdlParam = []
|
| 191 |
|
| 192 |
try: self.EDG_retry_count = cfg_params['EDG.retry_count']
|
| 193 |
except KeyError: self.EDG_retry_count = ''
|
| 194 |
|
| 195 |
try: self.EDG_shallow_retry_count= cfg_params['EDG.shallow_retry_count']
|
| 196 |
except KeyError: self.EDG_shallow_retry_count = ''
|
| 197 |
|
| 198 |
try: self.EDG_clock_time = cfg_params['EDG.max_wall_clock_time']
|
| 199 |
except KeyError: self.EDG_clock_time= ''
|
| 200 |
|
| 201 |
try: self.EDG_cpu_time = cfg_params['EDG.max_cpu_time']
|
| 202 |
except KeyError: self.EDG_cpu_time = ''
|
| 203 |
|
| 204 |
# Add EDG_WL_LOCATION to the python path
|
| 205 |
|
| 206 |
try:
|
| 207 |
path = os.environ['EDG_WL_LOCATION']
|
| 208 |
except:
|
| 209 |
msg = "Error: the EDG_WL_LOCATION variable is not set."
|
| 210 |
raise CrabException(msg)
|
| 211 |
|
| 212 |
libPath=os.path.join(path, "lib")
|
| 213 |
sys.path.append(libPath)
|
| 214 |
libPath=os.path.join(path, "lib", "python")
|
| 215 |
sys.path.append(libPath)
|
| 216 |
|
| 217 |
self.proxyValid=0
|
| 218 |
|
| 219 |
try:
|
| 220 |
self._taskId = cfg_params['taskId']
|
| 221 |
except:
|
| 222 |
self._taskId = ''
|
| 223 |
|
| 224 |
try: self.jobtypeName = cfg_params['CRAB.jobtype']
|
| 225 |
except KeyError: self.jobtypeName = ''
|
| 226 |
|
| 227 |
try: self.schedulerName = cfg_params['CRAB.scheduler']
|
| 228 |
except KeyError: self.scheduler = ''
|
| 229 |
|
| 230 |
try: self.dontCheckProxy=int(cfg_params["EDG.dont_check_proxy"])
|
| 231 |
except KeyError: self.dontCheckProxy = 0
|
| 232 |
|
| 233 |
return
|
| 234 |
|
| 235 |
|
| 236 |
def rb_configure(self, RB):
|
| 237 |
self.edg_config = ''
|
| 238 |
self.edg_config_vo = ''
|
| 239 |
self.rb_param_file = ''
|
| 240 |
|
| 241 |
edgConfig = EdgConfig(RB)
|
| 242 |
self.edg_config = edgConfig.config()
|
| 243 |
self.edg_config_vo = edgConfig.configVO()
|
| 244 |
|
| 245 |
if (self.edg_config and self.edg_config_vo != ''):
|
| 246 |
self.rb_param_file = 'RBconfig = "'+self.edg_config+'";\nRBconfigVO = "'+self.edg_config_vo+'";\n'
|
| 247 |
#print "rb_param_file = ", self.rb_param_file
|
| 248 |
return self.rb_param_file
|
| 249 |
|
| 250 |
|
| 251 |
def sched_parameter(self):
|
| 252 |
"""
|
| 253 |
Returns file with requirements and scheduler-specific parameters
|
| 254 |
"""
|
| 255 |
index = int(common.jobDB.nJobs()) - 1
|
| 256 |
job = common.job_list[index]
|
| 257 |
jbt = job.type()
|
| 258 |
|
| 259 |
lastBlock=-1
|
| 260 |
first = []
|
| 261 |
for n in range(common.jobDB.nJobs()):
|
| 262 |
currBlock=common.jobDB.block(n)
|
| 263 |
if (currBlock!=lastBlock):
|
| 264 |
lastBlock = currBlock
|
| 265 |
first.append(n)
|
| 266 |
|
| 267 |
req = ''
|
| 268 |
req = req + jbt.getRequirements()
|
| 269 |
|
| 270 |
if self.EDG_requirements:
|
| 271 |
if (req == ' '):
|
| 272 |
req = req + self.EDG_requirements
|
| 273 |
else:
|
| 274 |
req = req + ' && ' + self.EDG_requirements
|
| 275 |
|
| 276 |
if self.EDG_ce_white_list:
|
| 277 |
ce_white_list = string.split(self.EDG_ce_white_list,',')
|
| 278 |
for i in range(len(ce_white_list)):
|
| 279 |
if i == 0:
|
| 280 |
if (req == ' '):
|
| 281 |
req = req + '((RegExp("' + string.strip(ce_white_list[i]) + '", other.GlueCEUniqueId))'
|
| 282 |
else:
|
| 283 |
req = req + ' && ((RegExp("' + string.strip(ce_white_list[i]) + '", other.GlueCEUniqueId))'
|
| 284 |
pass
|
| 285 |
else:
|
| 286 |
req = req + ' || (RegExp("' + string.strip(ce_white_list[i]) + '", other.GlueCEUniqueId))'
|
| 287 |
req = req + ')'
|
| 288 |
|
| 289 |
if self.EDG_ce_black_list:
|
| 290 |
ce_black_list = string.split(self.EDG_ce_black_list,',')
|
| 291 |
for ce in ce_black_list:
|
| 292 |
if (req == ' '):
|
| 293 |
req = req + '(!RegExp("' + string.strip(ce) + '", other.GlueCEUniqueId))'
|
| 294 |
else:
|
| 295 |
req = req + ' && (!RegExp("' + string.strip(ce) + '", other.GlueCEUniqueId))'
|
| 296 |
pass
|
| 297 |
if self.EDG_clock_time:
|
| 298 |
if (req == ' '):
|
| 299 |
req = req + 'other.GlueCEPolicyMaxWallClockTime>='+self.EDG_clock_time
|
| 300 |
else:
|
| 301 |
req = req + ' && other.GlueCEPolicyMaxWallClockTime>='+self.EDG_clock_time
|
| 302 |
|
| 303 |
if self.EDG_cpu_time:
|
| 304 |
if (req == ' '):
|
| 305 |
req = req + ' other.GlueCEPolicyMaxCPUTime>='+self.EDG_cpu_time
|
| 306 |
else:
|
| 307 |
req = req + ' && other.GlueCEPolicyMaxCPUTime>='+self.EDG_cpu_time
|
| 308 |
|
| 309 |
for i in range(len(first)): # Add loop DS
|
| 310 |
groupReq = req
|
| 311 |
self.param='sched_param_'+str(i)+'.clad'
|
| 312 |
param_file = open(common.work_space.shareDir()+'/'+self.param, 'w')
|
| 313 |
|
| 314 |
itr4=self.findSites_(first[i])
|
| 315 |
for arg in itr4:
|
| 316 |
groupReq = groupReq + ' && anyMatch(other.storage.CloseSEs, ('+str(arg)+'))'
|
| 317 |
param_file.write('Requirements = '+groupReq +';\n')
|
| 318 |
|
| 319 |
if (self.rb_param_file != ''):
|
| 320 |
param_file.write(self.rb_param_file)
|
| 321 |
|
| 322 |
if len(self.EDG_addJdlParam):
|
| 323 |
for p in self.EDG_addJdlParam:
|
| 324 |
param_file.write(p)
|
| 325 |
|
| 326 |
param_file.close()
|
| 327 |
|
| 328 |
|
| 329 |
def wsSetupEnvironment(self):
|
| 330 |
"""
|
| 331 |
Returns part of a job script which does scheduler-specific work.
|
| 332 |
"""
|
| 333 |
txt = ''
|
| 334 |
txt += '# strip arguments\n'
|
| 335 |
txt += 'echo "strip arguments"\n'
|
| 336 |
txt += 'args=("$@")\n'
|
| 337 |
txt += 'nargs=$#\n'
|
| 338 |
txt += 'shift $nargs\n'
|
| 339 |
txt += "# job number (first parameter for job wrapper)\n"
|
| 340 |
#txt += "NJob=$1\n"
|
| 341 |
txt += "NJob=${args[0]}\n"
|
| 342 |
|
| 343 |
txt += '# job identification to DashBoard \n'
|
| 344 |
txt += 'MonitorJobID=`echo ${NJob}_$EDG_WL_JOBID`\n'
|
| 345 |
txt += 'SyncGridJobId=`echo $EDG_WL_JOBID`\n'
|
| 346 |
txt += 'MonitorID=`echo ' + self._taskId + '`\n'
|
| 347 |
txt += 'echo "MonitorJobID=`echo $MonitorJobID`" | tee -a $RUNTIME_AREA/$repo \n'
|
| 348 |
txt += 'echo "SyncGridJobId=`echo $SyncGridJobId`" | tee -a $RUNTIME_AREA/$repo \n'
|
| 349 |
txt += 'echo "MonitorID=`echo $MonitorID`" | tee -a $RUNTIME_AREA/$repo\n'
|
| 350 |
|
| 351 |
txt += 'echo "middleware discovery " \n'
|
| 352 |
txt += 'if [ $GRID3_APP_DIR ]; then\n'
|
| 353 |
txt += ' middleware=OSG \n'
|
| 354 |
txt += ' echo "SyncCE=`echo $EDG_WL_LOG_DESTINATION`" | tee -a $RUNTIME_AREA/$repo \n'
|
| 355 |
txt += ' echo "GridFlavour=`echo $middleware`" | tee -a $RUNTIME_AREA/$repo \n'
|
| 356 |
txt += ' echo "middleware =$middleware" \n'
|
| 357 |
txt += 'elif [ $OSG_APP ]; then \n'
|
| 358 |
txt += ' middleware=OSG \n'
|
| 359 |
txt += ' echo "SyncCE=`echo $EDG_WL_LOG_DESTINATION`" | tee -a $RUNTIME_AREA/$repo \n'
|
| 360 |
txt += ' echo "GridFlavour=`echo $middleware`" | tee -a $RUNTIME_AREA/$repo \n'
|
| 361 |
txt += ' echo "middleware =$middleware" \n'
|
| 362 |
txt += 'elif [ $VO_CMS_SW_DIR ]; then \n'
|
| 363 |
txt += ' middleware=LCG \n'
|
| 364 |
# txt += ' echo "SyncCE=`edg-brokerinfo getCE`" | tee -a $RUNTIME_AREA/$repo \n'
|
| 365 |
txt += ' echo "SyncCE=`glite-brokerinfo getCE`" | tee -a $RUNTIME_AREA/$repo \n'
|
| 366 |
txt += ' echo "GridFlavour=`echo $middleware`" | tee -a $RUNTIME_AREA/$repo \n'
|
| 367 |
txt += ' echo "middleware =$middleware" \n'
|
| 368 |
txt += 'else \n'
|
| 369 |
txt += ' echo "SET_CMS_ENV 10030 ==> middleware not identified" \n'
|
| 370 |
txt += ' echo "JOB_EXIT_STATUS = 10030" \n'
|
| 371 |
txt += ' echo "JobExitCode=10030" | tee -a $RUNTIME_AREA/$repo \n'
|
| 372 |
txt += ' dumpStatus $RUNTIME_AREA/$repo \n'
|
| 373 |
txt += ' rm -f $RUNTIME_AREA/$repo \n'
|
| 374 |
txt += ' echo "MonitorJobID=`echo $MonitorJobID`" | tee -a $RUNTIME_AREA/$repo \n'
|
| 375 |
txt += ' echo "MonitorID=`echo $MonitorID`" | tee -a $RUNTIME_AREA/$repo\n'
|
| 376 |
txt += ' exit 1 \n'
|
| 377 |
txt += 'fi \n'
|
| 378 |
|
| 379 |
txt += '# report first time to DashBoard \n'
|
| 380 |
txt += 'dumpStatus $RUNTIME_AREA/$repo \n'
|
| 381 |
txt += 'rm -f $RUNTIME_AREA/$repo \n'
|
| 382 |
txt += 'echo "MonitorJobID=`echo $MonitorJobID`" | tee -a $RUNTIME_AREA/$repo \n'
|
| 383 |
txt += 'echo "MonitorID=`echo $MonitorID`" | tee -a $RUNTIME_AREA/$repo\n'
|
| 384 |
|
| 385 |
txt += '\n\n'
|
| 386 |
|
| 387 |
# if int(self.copy_data) == 1:
|
| 388 |
# if self.SE:
|
| 389 |
# txt += 'export SE='+self.SE+'\n'
|
| 390 |
# txt += 'echo "SE = $SE"\n'
|
| 391 |
# if self.SE_PATH:
|
| 392 |
# if ( self.SE_PATH[-1] != '/' ) : self.SE_PATH = self.SE_PATH + '/'
|
| 393 |
# txt += 'export SE_PATH='+self.SE_PATH+'\n'
|
| 394 |
# txt += 'echo "SE_PATH = $SE_PATH"\n'
|
| 395 |
|
| 396 |
txt += 'export VO='+self.VO+'\n'
|
| 397 |
### add some line for LFC catalog setting
|
| 398 |
txt += 'if [ $middleware == LCG ]; then \n'
|
| 399 |
txt += ' if [[ $LCG_CATALOG_TYPE != \''+self.lcg_catalog_type+'\' ]]; then\n'
|
| 400 |
txt += ' export LCG_CATALOG_TYPE='+self.lcg_catalog_type+'\n'
|
| 401 |
txt += ' fi\n'
|
| 402 |
txt += ' if [[ $LFC_HOST != \''+self.lfc_host+'\' ]]; then\n'
|
| 403 |
txt += ' export LFC_HOST='+self.lfc_host+'\n'
|
| 404 |
txt += ' fi\n'
|
| 405 |
txt += ' if [[ $LFC_HOME != \''+self.lfc_home+'\' ]]; then\n'
|
| 406 |
txt += ' export LFC_HOME='+self.lfc_home+'\n'
|
| 407 |
txt += ' fi\n'
|
| 408 |
txt += 'elif [ $middleware == OSG ]; then\n'
|
| 409 |
txt += ' echo "LFC catalog setting to be implemented for OSG"\n'
|
| 410 |
txt += 'fi\n'
|
| 411 |
#####
|
| 412 |
if int(self.register_data) == 1:
|
| 413 |
txt += 'if [ $middleware == LCG ]; then \n'
|
| 414 |
txt += ' export LFN='+self.LFN+'\n'
|
| 415 |
txt += ' lfc-ls $LFN\n'
|
| 416 |
txt += ' result=$?\n'
|
| 417 |
txt += ' echo $result\n'
|
| 418 |
### creation of LFN dir in LFC catalog, under /grid/cms dir
|
| 419 |
txt += ' if [ $result != 0 ]; then\n'
|
| 420 |
txt += ' lfc-mkdir $LFN\n'
|
| 421 |
txt += ' result=$?\n'
|
| 422 |
txt += ' echo $result\n'
|
| 423 |
txt += ' fi\n'
|
| 424 |
txt += 'elif [ $middleware == OSG ]; then\n'
|
| 425 |
txt += ' echo " Files registration to be implemented for OSG"\n'
|
| 426 |
txt += 'fi\n'
|
| 427 |
txt += '\n'
|
| 428 |
|
| 429 |
if self.VO:
|
| 430 |
txt += 'export VO='+self.VO+'\n'
|
| 431 |
if self.LFN:
|
| 432 |
txt += 'if [ $middleware == LCG ]; then \n'
|
| 433 |
txt += ' export LFN='+self.LFN+'\n'
|
| 434 |
txt += 'fi\n'
|
| 435 |
txt += '\n'
|
| 436 |
|
| 437 |
txt += 'if [ $middleware == LCG ]; then\n'
|
| 438 |
# txt += ' CloseCEs=`edg-brokerinfo getCE`\n'
|
| 439 |
txt += ' CloseCEs=`glite-brokerinfo getCE`\n'
|
| 440 |
txt += ' echo "CloseCEs = $CloseCEs"\n'
|
| 441 |
txt += ' CE=`echo $CloseCEs | sed -e "s/:.*//"`\n'
|
| 442 |
txt += ' echo "CE = $CE"\n'
|
| 443 |
txt += 'elif [ $middleware == OSG ]; then \n'
|
| 444 |
txt += ' if [ $OSG_JOB_CONTACT ]; then \n'
|
| 445 |
txt += ' CE=`echo $OSG_JOB_CONTACT | /usr/bin/awk -F\/ \'{print $1}\'` \n'
|
| 446 |
txt += ' else \n'
|
| 447 |
txt += ' echo "SET_CMS_ENV 10099 ==> OSG mode: ERROR in setting CE name from OSG_JOB_CONTACT" \n'
|
| 448 |
txt += ' echo "JOB_EXIT_STATUS = 10099" \n'
|
| 449 |
txt += ' echo "JobExitCode=10099" | tee -a $RUNTIME_AREA/$repo \n'
|
| 450 |
txt += ' dumpStatus $RUNTIME_AREA/$repo \n'
|
| 451 |
txt += ' rm -f $RUNTIME_AREA/$repo \n'
|
| 452 |
txt += ' echo "MonitorJobID=`echo $MonitorJobID`" | tee -a $RUNTIME_AREA/$repo \n'
|
| 453 |
txt += ' echo "MonitorID=`echo $MonitorID`" | tee -a $RUNTIME_AREA/$repo\n'
|
| 454 |
txt += ' exit 1 \n'
|
| 455 |
txt += ' fi \n'
|
| 456 |
txt += 'fi \n'
|
| 457 |
|
| 458 |
return txt
|
| 459 |
|
| 460 |
def wsCopyInput(self):
|
| 461 |
"""
|
| 462 |
Copy input data from SE to WN
|
| 463 |
"""
|
| 464 |
txt = ''
|
| 465 |
if not self.copy_input_data: return txt
|
| 466 |
|
| 467 |
## OLI_Daniele deactivate for OSG (wait for LCG UI installed on OSG)
|
| 468 |
txt += 'if [ $middleware == OSG ]; then\n'
|
| 469 |
txt += ' #\n'
|
| 470 |
txt += ' # Copy Input Data from SE to this WN deactivated in OSG mode\n'
|
| 471 |
txt += ' #\n'
|
| 472 |
txt += ' echo "Copy Input Data from SE to this WN deactivated in OSG mode"\n'
|
| 473 |
txt += 'elif [ $middleware == LCG ]; then \n'
|
| 474 |
txt += ' #\n'
|
| 475 |
txt += ' # Copy Input Data from SE to this WN\n'
|
| 476 |
txt += ' #\n'
|
| 477 |
### changed by georgia (put a loop copying more than one input files per jobs)
|
| 478 |
txt += ' for input_file in $cur_file_list \n'
|
| 479 |
txt += ' do \n'
|
| 480 |
txt += ' lcg-cp --vo $VO --verbose -t 1200 lfn:$input_lfn/$input_file file:`pwd`/$input_file 2>&1\n'
|
| 481 |
txt += ' copy_input_exit_status=$?\n'
|
| 482 |
txt += ' echo "COPY_INPUT_EXIT_STATUS = $copy_input_exit_status"\n'
|
| 483 |
txt += ' if [ $copy_input_exit_status -ne 0 ]; then \n'
|
| 484 |
txt += ' echo "Problems with copying to WN" \n'
|
| 485 |
txt += ' else \n'
|
| 486 |
txt += ' echo "input copied into WN" \n'
|
| 487 |
txt += ' fi \n'
|
| 488 |
txt += ' done \n'
|
| 489 |
### copy a set of PU ntuples (same for each jobs -- but accessed randomly)
|
| 490 |
txt += ' for file in $cur_pu_list \n'
|
| 491 |
txt += ' do \n'
|
| 492 |
txt += ' lcg-cp --vo $VO --verbose -t 1200 lfn:$pu_lfn/$file file:`pwd`/$file 2>&1\n'
|
| 493 |
txt += ' copy_input_pu_exit_status=$?\n'
|
| 494 |
txt += ' echo "COPY_INPUT_PU_EXIT_STATUS = $copy_input_pu_exit_status"\n'
|
| 495 |
txt += ' if [ $copy_input_pu_exit_status -ne 0 ]; then \n'
|
| 496 |
txt += ' echo "Problems with copying pu to WN" \n'
|
| 497 |
txt += ' else \n'
|
| 498 |
txt += ' echo "input pu files copied into WN" \n'
|
| 499 |
txt += ' fi \n'
|
| 500 |
txt += ' done \n'
|
| 501 |
txt += ' \n'
|
| 502 |
txt += ' ### Check SCRATCH space available on WN : \n'
|
| 503 |
txt += ' df -h \n'
|
| 504 |
txt += 'fi \n'
|
| 505 |
|
| 506 |
return txt
|
| 507 |
|
| 508 |
def wsCopyOutput(self):
|
| 509 |
"""
|
| 510 |
Write a CopyResults part of a job script, e.g.
|
| 511 |
to copy produced output into a storage element.
|
| 512 |
"""
|
| 513 |
txt = ''
|
| 514 |
|
| 515 |
##### FEDE MOVED FROM SET_ENVIRONMENT ##############
|
| 516 |
|
| 517 |
SE_PATH=''
|
| 518 |
if int(self.copy_data) == 1:
|
| 519 |
if self.SE:
|
| 520 |
txt += 'export SE='+self.SE+'\n'
|
| 521 |
txt += 'echo "SE = $SE"\n'
|
| 522 |
if self.SE_PATH:
|
| 523 |
if ( self.SE_PATH[-1] != '/' ) : self.SE_PATH = self.SE_PATH + '/'
|
| 524 |
SE_PATH=self.SE_PATH
|
| 525 |
####### FEDE FOR DBS2
|
| 526 |
if int(self.publish_data) == 1:
|
| 527 |
txt += '### publish_data = 1 so the SE path where to copy the output is: \n'
|
| 528 |
#txt += 'subject=`voms-proxy-info -subject | awk -F\'CN\' \'{print $2$3$4}\' | tr -d \'=/ \'` \n'
|
| 529 |
#txt += 'echo "subject = $subject" \n'
|
| 530 |
#path_add = '${subject}/'+ self.publish_data_name +'_${PSETHASH}/'
|
| 531 |
path_add = self.UserGridName + '/' + self.publish_data_name +'_${PSETHASH}/'
|
| 532 |
SE_PATH = SE_PATH + path_add
|
| 533 |
|
| 534 |
txt += 'export SE_PATH='+SE_PATH+'\n'
|
| 535 |
txt += 'echo "SE_PATH = $SE_PATH"\n'
|
| 536 |
|
| 537 |
##########################################################
|
| 538 |
|
| 539 |
#if int(self.copy_data) == 1:
|
| 540 |
txt += '#\n'
|
| 541 |
txt += '# Copy output to SE = $SE\n'
|
| 542 |
txt += '#\n'
|
| 543 |
txt += ' if [ $middleware == OSG ]; then\n'
|
| 544 |
txt += ' echo "X509_USER_PROXY = $X509_USER_PROXY"\n'
|
| 545 |
txt += ' echo "source $OSG_APP/glite/setup_glite_ui.sh"\n'
|
| 546 |
txt += ' source $OSG_APP/glite/setup_glite_ui.sh\n'
|
| 547 |
txt += ' export X509_CERT_DIR=$OSG_APP/glite/etc/grid-security/certificates\n'
|
| 548 |
txt += ' echo "export X509_CERT_DIR=$X509_CERT_DIR"\n'
|
| 549 |
txt += ' fi \n'
|
| 550 |
|
| 551 |
txt += ' for out_file in $file_list ; do\n'
|
| 552 |
txt += ' echo "Trying to copy output file to $SE using srmcp"\n'
|
| 553 |
txt += ' echo "mkdir -p $HOME/.srmconfig"\n'
|
| 554 |
txt += ' mkdir -p $HOME/.srmconfig\n'
|
| 555 |
txt += ' if [ $middleware == LCG ]; then\n'
|
| 556 |
txt += ' echo "srmcp -retry_num 3 -retry_timeout 480000 file:///`pwd`/$out_file srm://${SE}:8443${SE_PATH}$out_file"\n'
|
| 557 |
txt += ' exitstring=`srmcp -retry_num 3 -retry_timeout 480000 file:///\`pwd\`/$out_file srm://${SE}:8443${SE_PATH}$out_file 2>&1`\n'
|
| 558 |
txt += ' elif [ $middleware == OSG ]; then\n'
|
| 559 |
txt += ' echo "srmcp -retry_num 3 -retry_timeout 240000 -x509_user_trusted_certificates $X509_CERT_DIR file:///`pwd`/$out_file srm://${SE}:8443${SE_PATH}$out_file"\n'
|
| 560 |
txt += ' exitstring=`srmcp -retry_num 3 -retry_timeout 240000 -x509_user_trusted_certificates $X509_CERT_DIR file:///\`pwd\`/$out_file srm://${SE}:8443${SE_PATH}$out_file 2>&1`\n'
|
| 561 |
txt += ' fi \n'
|
| 562 |
txt += ' copy_exit_status=$?\n'
|
| 563 |
txt += ' echo "COPY_EXIT_STATUS for srmcp = $copy_exit_status"\n'
|
| 564 |
txt += ' echo "STAGE_OUT = $copy_exit_status"\n'
|
| 565 |
|
| 566 |
txt += ' if [ $copy_exit_status -ne 0 ]; then\n'
|
| 567 |
txt += ' echo "Possible problem with SE = $SE"\n'
|
| 568 |
txt += ' echo "StageOutExitStatus = 198" | tee -a $RUNTIME_AREA/$repo\n'
|
| 569 |
txt += ' echo "StageOutExitStatusReason = $exitstring" | tee -a $RUNTIME_AREA/$repo\n'
|
| 570 |
txt += ' echo "srmcp failed, attempting lcg-cp."\n'
|
| 571 |
if common.logger.debugLevel() >= 5:
|
| 572 |
########### FEDE CHANGES TO WRITE IN SRM LNL.INFN.IT #################
|
| 573 |
txt += ' echo "lcg-cp --vo $VO -t 2400 --verbose file://`pwd`/$out_file gsiftp://${SE}${SE_PATH}$out_file"\n'
|
| 574 |
txt += ' exitstring=`lcg-cp --vo $VO -t 2400 --verbose file://\`pwd\`/$out_file gsiftp://${SE}${SE_PATH}$out_file 2>&1`\n'
|
| 575 |
#txt += ' echo "lcg-cp --vo $VO -t 2400 --verbose file://`pwd`/$out_file srm://${SE}:8443${SE_PATH}$out_file"\n'
|
| 576 |
#txt += ' exitstring=`lcg-cp --vo $VO -t 2400 --verbose file://\`pwd\`/$out_file srm://${SE}:8443${SE_PATH}$out_file 2>&1`\n'
|
| 577 |
else:
|
| 578 |
txt += ' echo "lcg-cp --vo $VO -t 2400 file://`pwd`/$out_file gsiftp://${SE}${SE_PATH}$out_file"\n'
|
| 579 |
txt += ' exitstring=`lcg-cp --vo $VO -t 2400 file://\`pwd\`/$out_file gsiftp://${SE}${SE_PATH}$out_file 2>&1`\n'
|
| 580 |
#txt += ' echo "lcg-cp --vo $VO -t 2400 file://`pwd`/$out_file srm://${SE}:8443${SE_PATH}$out_file"\n'
|
| 581 |
#txt += ' exitstring=`lcg-cp --vo $VO -t 2400 file://\`pwd\`/$out_file srm://${SE}:8443${SE_PATH}$out_file 2>&1`\n'
|
| 582 |
txt += ' copy_exit_status=$?\n'
|
| 583 |
txt += ' echo "COPY_EXIT_STATUS for lcg-cp = $copy_exit_status"\n'
|
| 584 |
txt += ' echo "STAGE_OUT = $copy_exit_status"\n'
|
| 585 |
|
| 586 |
txt += ' if [ $copy_exit_status -ne 0 ]; then\n'
|
| 587 |
txt += ' echo "Problems with SE = $SE"\n'
|
| 588 |
txt += ' echo "StageOutExitStatus = 198" | tee -a $RUNTIME_AREA/$repo\n'
|
| 589 |
txt += ' echo "StageOutExitStatusReason = $exitstring" | tee -a $RUNTIME_AREA/$repo\n'
|
| 590 |
txt += ' echo "srmcp and lcg-cp and failed!"\n'
|
| 591 |
txt += ' SE=""\n'
|
| 592 |
txt += ' echo "SE = $SE"\n'
|
| 593 |
txt += ' SE_PATH=""\n'
|
| 594 |
txt += ' echo "SE_PATH = $SE_PATH"\n'
|
| 595 |
txt += ' else\n'
|
| 596 |
txt += ' echo "StageOutSE = $SE" | tee -a $RUNTIME_AREA/$repo\n'
|
| 597 |
txt += ' echo "StageOutCatalog = " | tee -a $RUNTIME_AREA/$repo\n'
|
| 598 |
txt += ' echo "output copied into $SE/$SE_PATH directory"\n'
|
| 599 |
txt += ' echo "StageOutExitStatus = 0" | tee -a $RUNTIME_AREA/$repo\n'
|
| 600 |
txt += ' echo "lcg-cp succeeded"\n'
|
| 601 |
txt += ' fi\n'
|
| 602 |
txt += ' else\n'
|
| 603 |
txt += ' echo "StageOutSE = $SE" | tee -a $RUNTIME_AREA/$repo\n'
|
| 604 |
txt += ' echo "StageOutCatalog = " | tee -a $RUNTIME_AREA/$repo\n'
|
| 605 |
txt += ' echo "output copied into $SE/$SE_PATH directory"\n'
|
| 606 |
txt += ' echo "StageOutExitStatus = 0" | tee -a $RUNTIME_AREA/$repo\n'
|
| 607 |
txt += ' echo "srmcp succeeded"\n'
|
| 608 |
txt += ' fi\n'
|
| 609 |
txt += ' done\n'
|
| 610 |
txt += ' exit_status=$copy_exit_status\n'
|
| 611 |
return txt
|
| 612 |
|
| 613 |
def wsRegisterOutput(self):
|
| 614 |
"""
|
| 615 |
Returns part of a job script which does scheduler-specific work.
|
| 616 |
"""
|
| 617 |
|
| 618 |
txt = ''
|
| 619 |
if int(self.register_data) == 1:
|
| 620 |
## OLI_Daniele deactivate for OSG (wait for LCG UI installed on OSG)
|
| 621 |
txt += 'if [ $middleware == OSG ]; then\n'
|
| 622 |
txt += ' #\n'
|
| 623 |
txt += ' # Register output to LFC deactivated in OSG mode\n'
|
| 624 |
txt += ' #\n'
|
| 625 |
txt += ' echo "Register output to LFC deactivated in OSG mode"\n'
|
| 626 |
txt += 'elif [ $middleware == LCG ]; then \n'
|
| 627 |
txt += '#\n'
|
| 628 |
txt += '# Register output to LFC\n'
|
| 629 |
txt += '#\n'
|
| 630 |
txt += ' if [ $copy_exit_status -eq 0 ]; then\n'
|
| 631 |
txt += ' for out_file in $file_list ; do\n'
|
| 632 |
txt += ' echo "Trying to register the output file into LFC"\n'
|
| 633 |
txt += ' echo "lcg-rf -l $LFN/$out_file --vo $VO -t 1200 sfn://$SE$SE_PATH/$out_file 2>&1"\n'
|
| 634 |
txt += ' lcg-rf -l $LFN/$out_file --vo $VO -t 1200 sfn://$SE$SE_PATH/$out_file 2>&1 \n'
|
| 635 |
txt += ' register_exit_status=$?\n'
|
| 636 |
txt += ' echo "REGISTER_EXIT_STATUS = $register_exit_status"\n'
|
| 637 |
txt += ' echo "STAGE_OUT = $register_exit_status"\n'
|
| 638 |
txt += ' if [ $register_exit_status -ne 0 ]; then \n'
|
| 639 |
txt += ' echo "Problems with the registration to LFC" \n'
|
| 640 |
txt += ' echo "Try with srm protocol" \n'
|
| 641 |
txt += ' echo "lcg-rf -l $LFN/$out_file --vo $VO -t 1200 srm://$SE$SE_PATH/$out_file 2>&1"\n'
|
| 642 |
txt += ' lcg-rf -l $LFN/$out_file --vo $VO -t 1200 srm://$SE$SE_PATH/$out_file 2>&1 \n'
|
| 643 |
txt += ' register_exit_status=$?\n'
|
| 644 |
txt += ' echo "REGISTER_EXIT_STATUS = $register_exit_status"\n'
|
| 645 |
txt += ' echo "STAGE_OUT = $register_exit_status"\n'
|
| 646 |
txt += ' if [ $register_exit_status -ne 0 ]; then \n'
|
| 647 |
txt += ' echo "Problems with the registration into LFC" \n'
|
| 648 |
txt += ' fi \n'
|
| 649 |
txt += ' else \n'
|
| 650 |
txt += ' echo "output registered to LFC"\n'
|
| 651 |
txt += ' fi \n'
|
| 652 |
txt += ' echo "StageOutExitStatus = $register_exit_status" | tee -a $RUNTIME_AREA/$repo\n'
|
| 653 |
txt += ' done\n'
|
| 654 |
txt += ' else \n'
|
| 655 |
txt += ' echo "Trying to copy output file to CloseSE"\n'
|
| 656 |
# txt += ' CLOSE_SE=`edg-brokerinfo getCloseSEs | head -1`\n'
|
| 657 |
txt += ' CLOSE_SE=`glite-brokerinfo getCloseSEs | head -1`\n'
|
| 658 |
txt += ' for out_file in $file_list ; do\n'
|
| 659 |
txt += ' echo "lcg-cr -v -l lfn:${LFN}/$out_file -d $CLOSE_SE -P $LFN/$out_file --vo $VO file://$RUNTIME_AREA/$out_file 2>&1" \n'
|
| 660 |
txt += ' lcg-cr -v -l lfn:${LFN}/$out_file -d $CLOSE_SE -P $LFN/$out_file --vo $VO file://$RUNTIME_AREA/$out_file 2>&1 \n'
|
| 661 |
txt += ' register_exit_status=$?\n'
|
| 662 |
txt += ' echo "REGISTER_EXIT_STATUS = $register_exit_status"\n'
|
| 663 |
txt += ' echo "STAGE_OUT = $register_exit_status"\n'
|
| 664 |
txt += ' if [ $register_exit_status -ne 0 ]; then \n'
|
| 665 |
txt += ' echo "Problems with CloseSE or Catalog" \n'
|
| 666 |
txt += ' else \n'
|
| 667 |
txt += ' echo "The program was successfully executed"\n'
|
| 668 |
txt += ' echo "SE = $CLOSE_SE"\n'
|
| 669 |
txt += ' echo "LFN for the file is LFN=${LFN}/$out_file"\n'
|
| 670 |
txt += ' fi \n'
|
| 671 |
txt += ' echo "StageOutExitStatus = $register_exit_status" | tee -a $RUNTIME_AREA/$repo\n'
|
| 672 |
txt += ' done\n'
|
| 673 |
txt += ' fi \n'
|
| 674 |
txt += ' exit_status=$register_exit_status\n'
|
| 675 |
txt += 'fi \n'
|
| 676 |
return txt
|
| 677 |
|
| 678 |
def loggingInfo(self, id):
|
| 679 |
"""
|
| 680 |
retrieve the logging info from logging and bookkeeping and return it
|
| 681 |
"""
|
| 682 |
self.checkProxy()
|
| 683 |
cmd = 'edg-job-get-logging-info -v 2 ' + id
|
| 684 |
cmd_out = runCommand(cmd)
|
| 685 |
return cmd_out
|
| 686 |
|
| 687 |
def queryDetailedStatus(self, id):
|
| 688 |
""" Query a detailed status of the job with id """
|
| 689 |
cmd = 'edg-job-status '+id
|
| 690 |
cmd_out = runCommand(cmd)
|
| 691 |
return cmd_out
|
| 692 |
|
| 693 |
##Addedd Daniele
|
| 694 |
# #######################################################################
|
| 695 |
def checkBlackList(self, Sites, fileblocks):
|
| 696 |
"""
|
| 697 |
select sites that are not excluded by the user (via SE black list)
|
| 698 |
"""
|
| 699 |
goodSites = []
|
| 700 |
for aSite in Sites:
|
| 701 |
common.logger.debug(10,'Site '+aSite)
|
| 702 |
good=1
|
| 703 |
for re in self.reSEBlackList:
|
| 704 |
if re.search(string.lower(aSite)):
|
| 705 |
common.logger.debug(5,'SE in black list, skipping site '+aSite)
|
| 706 |
good=0
|
| 707 |
pass
|
| 708 |
if good: goodSites.append(aSite)
|
| 709 |
if len(goodSites) == 0:
|
| 710 |
msg = "No sites hosting the block %s after BlackList" % fileblocks
|
| 711 |
common.logger.debug(5,msg)
|
| 712 |
common.logger.debug(5,"Proceeding without this block.\n")
|
| 713 |
else:
|
| 714 |
common.logger.debug(5,"Selected sites for block "+str(fileblocks)+" via BlackList are "+str(goodSites)+"\n")
|
| 715 |
return goodSites
|
| 716 |
|
| 717 |
# #######################################################################
|
| 718 |
def checkWhiteList(self, Sites, fileblocks):
|
| 719 |
"""
|
| 720 |
select sites that are defined by the user (via SE white list)
|
| 721 |
"""
|
| 722 |
if len(self.reSEWhiteList)==0: return Sites
|
| 723 |
goodSites = []
|
| 724 |
for aSite in Sites:
|
| 725 |
good=0
|
| 726 |
for re in self.reSEWhiteList:
|
| 727 |
if re.search(string.lower(aSite)):
|
| 728 |
common.logger.debug(5,'SE in white list, adding site '+aSite)
|
| 729 |
good=1
|
| 730 |
pass
|
| 731 |
if good: goodSites.append(aSite)
|
| 732 |
|
| 733 |
if len(goodSites) == 0:
|
| 734 |
msg = "No sites hosting the block %s after WhiteList" % fileblocks
|
| 735 |
common.logger.debug(5,msg)
|
| 736 |
common.logger.debug(5,"Proceeding without this block.\n")
|
| 737 |
else:
|
| 738 |
common.logger.debug(5,"Selected sites for block "+str(fileblocks)+" via WhiteList are "+str(goodSites)+"\n")
|
| 739 |
|
| 740 |
return goodSites
|
| 741 |
|
| 742 |
# #######################################################################
|
| 743 |
def findSites_(self, n):
|
| 744 |
itr4 =[]
|
| 745 |
|
| 746 |
sites = common.jobDB.destination(n)
|
| 747 |
|
| 748 |
if len(sites)>0 and sites[0]=="":
|
| 749 |
return itr4
|
| 750 |
|
| 751 |
itr = ''
|
| 752 |
if sites != [""]:#CarlosDaniele
|
| 753 |
##Addedd Daniele
|
| 754 |
replicas = self.checkBlackList(sites,n)
|
| 755 |
if len(replicas)!=0:
|
| 756 |
replicas = self.checkWhiteList(replicas,n)
|
| 757 |
|
| 758 |
if len(replicas)==0:
|
| 759 |
msg = 'No sites remaining that host any part of the requested data! Exiting... '
|
| 760 |
raise CrabException(msg)
|
| 761 |
#####
|
| 762 |
# for site in sites:
|
| 763 |
for site in replicas:
|
| 764 |
#itr = itr + 'target.GlueSEUniqueID=="'+site+'" || '
|
| 765 |
itr = itr + 'target.GlueSEUniqueID=="'+site+'" || '
|
| 766 |
itr = itr[0:-4]
|
| 767 |
itr4.append( itr )
|
| 768 |
return itr4
|
| 769 |
|
| 770 |
def createXMLSchScript(self, nj, argsList):
|
| 771 |
|
| 772 |
"""
|
| 773 |
Create a XML-file for BOSS4.
|
| 774 |
"""
|
| 775 |
# job = common.job_list[nj]
|
| 776 |
"""
|
| 777 |
INDY
|
| 778 |
[begin] FIX-ME:
|
| 779 |
I would pass jobType instead of job
|
| 780 |
"""
|
| 781 |
index = nj - 1
|
| 782 |
job = common.job_list[index]
|
| 783 |
jbt = job.type()
|
| 784 |
|
| 785 |
inp_sandbox = jbt.inputSandbox(index)
|
| 786 |
#out_sandbox = jbt.outputSandbox(index)
|
| 787 |
"""
|
| 788 |
[end] FIX-ME
|
| 789 |
"""
|
| 790 |
|
| 791 |
|
| 792 |
title = '<?xml version="1.0" encoding="UTF-8" standalone="no"?>\n'
|
| 793 |
jt_string = ''
|
| 794 |
|
| 795 |
xml_fname = str(self.jobtypeName)+'.xml'
|
| 796 |
xml = open(common.work_space.shareDir()+'/'+xml_fname, 'a')
|
| 797 |
|
| 798 |
#TaskName
|
| 799 |
dir = string.split(common.work_space.topDir(), '/')
|
| 800 |
taskName = dir[len(dir)-2]
|
| 801 |
|
| 802 |
to_write = ''
|
| 803 |
|
| 804 |
req=' '
|
| 805 |
req = req + jbt.getRequirements()
|
| 806 |
|
| 807 |
if self.EDG_requirements:
|
| 808 |
if (req == ' '):
|
| 809 |
req = req + self.EDG_requirements
|
| 810 |
else:
|
| 811 |
req = req + ' && ' + self.EDG_requirements
|
| 812 |
if self.EDG_ce_white_list:
|
| 813 |
ce_white_list = string.split(self.EDG_ce_white_list,',')
|
| 814 |
for i in range(len(ce_white_list)):
|
| 815 |
if i == 0:
|
| 816 |
if (req == ' '):
|
| 817 |
req = req + '((RegExp("' + ce_white_list[i] + '", other.GlueCEUniqueId))'
|
| 818 |
else:
|
| 819 |
req = req + ' && ((RegExp("' + ce_white_list[i] + '", other.GlueCEUniqueId))'
|
| 820 |
pass
|
| 821 |
else:
|
| 822 |
req = req + ' || (RegExp("' + ce_white_list[i] + '", other.GlueCEUniqueId))'
|
| 823 |
req = req + ')'
|
| 824 |
|
| 825 |
if self.EDG_ce_black_list:
|
| 826 |
ce_black_list = string.split(self.EDG_ce_black_list,',')
|
| 827 |
for ce in ce_black_list:
|
| 828 |
if (req == ' '):
|
| 829 |
req = req + '(!RegExp("' + ce + '", other.GlueCEUniqueId))'
|
| 830 |
else:
|
| 831 |
req = req + ' && (!RegExp("' + ce + '", other.GlueCEUniqueId))'
|
| 832 |
pass
|
| 833 |
if self.EDG_clock_time:
|
| 834 |
if (req == ' '):
|
| 835 |
req = req + 'other.GlueCEPolicyMaxWallClockTime>='+self.EDG_clock_time
|
| 836 |
else:
|
| 837 |
req = req + ' && other.GlueCEPolicyMaxWallClockTime>='+self.EDG_clock_time
|
| 838 |
|
| 839 |
if self.EDG_cpu_time:
|
| 840 |
if (req == ' '):
|
| 841 |
req = req + ' other.GlueCEPolicyMaxCPUTime>='+self.EDG_cpu_time
|
| 842 |
else:
|
| 843 |
req = req + ' && other.GlueCEPolicyMaxCPUTime>='+self.EDG_cpu_time
|
| 844 |
|
| 845 |
if ( self.EDG_retry_count ):
|
| 846 |
to_write = to_write + 'RetryCount = "'+self.EDG_retry_count+'"\n'
|
| 847 |
pass
|
| 848 |
|
| 849 |
if ( self.EDG_shallow_retry_count ):
|
| 850 |
to_write = to_write + 'ShallowRetryCount = "'+self.EDG_shallow_retry_count+'"\n'
|
| 851 |
pass
|
| 852 |
|
| 853 |
to_write = to_write + 'MyProxyServer = ""' + self.proxyServer + '""\n'
|
| 854 |
to_write = to_write + 'VirtualOrganisation = ""' + self.VO + '""\n'
|
| 855 |
|
| 856 |
#TaskName
|
| 857 |
dir = string.split(common.work_space.topDir(), '/')
|
| 858 |
taskName = dir[len(dir)-2]
|
| 859 |
|
| 860 |
xml.write(str(title))
|
| 861 |
#xml.write('<task name="' +str(taskName)+'" sub_path="' +common.work_space.pathForTgz() + 'share/.boss_cache">\n')
|
| 862 |
|
| 863 |
#xml.write('<task name="' +str(taskName)+ '" sub_path="' +common.work_space.pathForTgz() + 'share/.boss_cache"' + '" task_info="' + os.path.expandvars('X509_USER_PROXY') + '">\n')
|
| 864 |
xml.write('<task name="' +str(taskName)+ '" sub_path="' +common.work_space.pathForTgz() + 'share/.boss_cache"' + ' task_info="' + os.environ["X509_USER_PROXY"] + '">\n')
|
| 865 |
xml.write(jt_string)
|
| 866 |
|
| 867 |
if (to_write != ''):
|
| 868 |
xml.write('<extraTags\n')
|
| 869 |
xml.write(to_write)
|
| 870 |
xml.write('/>\n')
|
| 871 |
pass
|
| 872 |
|
| 873 |
xml.write('<iterator>\n')
|
| 874 |
xml.write('\t<iteratorRule name="ITR1">\n')
|
| 875 |
xml.write('\t\t<ruleElement> 1:'+ str(nj) + ' </ruleElement>\n')
|
| 876 |
xml.write('\t</iteratorRule>\n')
|
| 877 |
xml.write('\t<iteratorRule name="ITR2">\n')
|
| 878 |
for arg in argsList:
|
| 879 |
xml.write('\t\t<ruleElement> <![CDATA[\n'+ arg + '\n\t\t]]> </ruleElement>\n')
|
| 880 |
pass
|
| 881 |
xml.write('\t</iteratorRule>\n')
|
| 882 |
#print jobList
|
| 883 |
xml.write('\t<iteratorRule name="ITR3">\n')
|
| 884 |
xml.write('\t\t<ruleElement> 1:'+ str(nj) + ':1:6 </ruleElement>\n')
|
| 885 |
xml.write('\t</iteratorRule>\n')
|
| 886 |
|
| 887 |
'''
|
| 888 |
indy: here itr4
|
| 889 |
'''
|
| 890 |
|
| 891 |
xml.write('<chain name="' +str(taskName)+'__ITR1_" scheduler="'+str(self.schedulerName)+'">\n')
|
| 892 |
# xml.write('<chain scheduler="'+str(self.schedulerName)+'">\n')
|
| 893 |
xml.write(jt_string)
|
| 894 |
|
| 895 |
#executable
|
| 896 |
|
| 897 |
"""
|
| 898 |
INDY
|
| 899 |
script depends on jobType: it should be probably get in a different way
|
| 900 |
"""
|
| 901 |
script = job.scriptFilename()
|
| 902 |
xml.write('<program>\n')
|
| 903 |
xml.write('<exec> ' + os.path.basename(script) +' </exec>\n')
|
| 904 |
xml.write(jt_string)
|
| 905 |
|
| 906 |
xml.write('<args> <![CDATA[\n _ITR2_ \n]]> </args>\n')
|
| 907 |
xml.write('<program_types> crabjob </program_types>\n')
|
| 908 |
inp_box = common.work_space.pathForTgz() + 'job/' + jbt.scriptName + ','
|
| 909 |
|
| 910 |
if inp_sandbox != None:
|
| 911 |
for fl in inp_sandbox:
|
| 912 |
inp_box = inp_box + '' + fl + ','
|
| 913 |
pass
|
| 914 |
pass
|
| 915 |
|
| 916 |
# if (not jbt.additional_inbox_files == []):
|
| 917 |
# inp_box = inp_box + ','
|
| 918 |
# for addFile in jbt.additional_inbox_files:
|
| 919 |
# #addFile = os.path.abspath(addFile)
|
| 920 |
# inp_box = inp_box+''+addFile+','
|
| 921 |
# pass
|
| 922 |
|
| 923 |
if inp_box[-1] == ',' : inp_box = inp_box[:-1]
|
| 924 |
inp_box = '<infiles> <![CDATA[\n' + inp_box + '\n]]> </infiles>\n'
|
| 925 |
xml.write(inp_box)
|
| 926 |
|
| 927 |
base = jbt.name()
|
| 928 |
stdout = base + '__ITR3_.stdout'
|
| 929 |
stderr = base + '__ITR3_.stderr'
|
| 930 |
|
| 931 |
xml.write('<stderr> ' + stderr + '</stderr>\n')
|
| 932 |
xml.write('<stdout> ' + stdout + '</stdout>\n')
|
| 933 |
|
| 934 |
|
| 935 |
out_box = stdout + ',' + \
|
| 936 |
stderr + ',.BrokerInfo,'
|
| 937 |
|
| 938 |
"""
|
| 939 |
if int(self.return_data) == 1:
|
| 940 |
if out_sandbox != None:
|
| 941 |
for fl in out_sandbox:
|
| 942 |
out_box = out_box + '' + fl + ','
|
| 943 |
pass
|
| 944 |
pass
|
| 945 |
pass
|
| 946 |
"""
|
| 947 |
|
| 948 |
"""
|
| 949 |
INDY
|
| 950 |
something similar should be also done for infiles (if it makes sense!)
|
| 951 |
"""
|
| 952 |
# Stuff to be returned _always_ via sandbox
|
| 953 |
for fl in jbt.output_file_sandbox:
|
| 954 |
out_box = out_box + '' + jbt.numberFile_(fl, '_ITR1_') + ','
|
| 955 |
pass
|
| 956 |
pass
|
| 957 |
|
| 958 |
# via sandbox iif required return_data
|
| 959 |
if int(self.return_data) == 1:
|
| 960 |
for fl in jbt.output_file:
|
| 961 |
out_box = out_box + '' + jbt.numberFile_(fl, '_ITR1_') + ','
|
| 962 |
pass
|
| 963 |
pass
|
| 964 |
|
| 965 |
if out_box[-1] == ',' : out_box = out_box[:-1]
|
| 966 |
out_box = '<outfiles> <![CDATA[\n' + out_box + '\n]]></outfiles>\n'
|
| 967 |
xml.write(out_box)
|
| 968 |
|
| 969 |
xml.write('<BossAttr> crabjob.INTERNAL_ID=_ITR1_ </BossAttr>\n')
|
| 970 |
|
| 971 |
xml.write('</program>\n')
|
| 972 |
xml.write('</chain>\n')
|
| 973 |
|
| 974 |
xml.write('</iterator>\n')
|
| 975 |
xml.write('</task>\n')
|
| 976 |
|
| 977 |
xml.close()
|
| 978 |
|
| 979 |
|
| 980 |
return
|
| 981 |
|
| 982 |
def checkProxy(self):
|
| 983 |
"""
|
| 984 |
Function to check the Globus proxy.
|
| 985 |
"""
|
| 986 |
if (self.proxyValid): return
|
| 987 |
|
| 988 |
### Just return if asked to do so
|
| 989 |
if (self.dontCheckProxy==1):
|
| 990 |
self.proxyValid=1
|
| 991 |
return
|
| 992 |
|
| 993 |
minTimeLeft=10*3600 # in seconds
|
| 994 |
|
| 995 |
minTimeLeftServer = 100 # in hours
|
| 996 |
|
| 997 |
mustRenew = 0
|
| 998 |
timeLeftLocal = runCommand('voms-proxy-info -timeleft 2>/dev/null')
|
| 999 |
timeLeftServer = -999
|
| 1000 |
if not timeLeftLocal or int(timeLeftLocal) <= 0 or not isInt(timeLeftLocal):
|
| 1001 |
mustRenew = 1
|
| 1002 |
else:
|
| 1003 |
timeLeftServer = runCommand('voms-proxy-info -actimeleft 2>/dev/null | head -1')
|
| 1004 |
if not timeLeftServer or not isInt(timeLeftServer):
|
| 1005 |
mustRenew = 1
|
| 1006 |
elif timeLeftLocal<minTimeLeft or timeLeftServer<minTimeLeft:
|
| 1007 |
mustRenew = 1
|
| 1008 |
pass
|
| 1009 |
pass
|
| 1010 |
|
| 1011 |
if mustRenew:
|
| 1012 |
common.logger.message( "No valid proxy found or remaining time of validity of already existing proxy shorter than 10 hours!\n Creating a user proxy with default length of 192h\n")
|
| 1013 |
cmd = 'voms-proxy-init -voms '+self.VO
|
| 1014 |
if self.group:
|
| 1015 |
cmd += ':/'+self.VO+'/'+self.group
|
| 1016 |
if self.role:
|
| 1017 |
cmd += '/role='+self.role
|
| 1018 |
cmd += ' -valid 192:00'
|
| 1019 |
try:
|
| 1020 |
# SL as above: damn it!
|
| 1021 |
common.logger.debug(10,cmd)
|
| 1022 |
out = os.system(cmd)
|
| 1023 |
if (out>0): raise CrabException("Unable to create a valid proxy!\n")
|
| 1024 |
except:
|
| 1025 |
msg = "Unable to create a valid proxy!\n"
|
| 1026 |
raise CrabException(msg)
|
| 1027 |
pass
|
| 1028 |
|
| 1029 |
## now I do have a voms proxy valid, and I check the myproxy server
|
| 1030 |
renewProxy = 0
|
| 1031 |
cmd = 'myproxy-info -d -s '+self.proxyServer
|
| 1032 |
cmd_out = runCommand(cmd,0,20)
|
| 1033 |
if not cmd_out:
|
| 1034 |
common.logger.message('No credential delegated to myproxy server '+self.proxyServer+' will do now')
|
| 1035 |
renewProxy = 1
|
| 1036 |
else:
|
| 1037 |
# if myproxy exist but not long enough, renew
|
| 1038 |
reTime = re.compile( r'timeleft: (\d+)' )
|
| 1039 |
#print "<"+str(reTime.search( cmd_out ).group(1))+">"
|
| 1040 |
if reTime.match( cmd_out ):
|
| 1041 |
time = reTime.search( cmd_out ).group(1)
|
| 1042 |
if time < minTimeLeftServer:
|
| 1043 |
renewProxy = 1
|
| 1044 |
common.logger.message('No credential delegation will expire in '+time+' hours: renew it')
|
| 1045 |
pass
|
| 1046 |
pass
|
| 1047 |
|
| 1048 |
# if not, create one.
|
| 1049 |
if renewProxy:
|
| 1050 |
cmd = 'myproxy-init -d -n -s '+self.proxyServer
|
| 1051 |
out = os.system(cmd)
|
| 1052 |
if (out>0):
|
| 1053 |
raise CrabException("Unable to delegate the proxy to myproxyserver "+self.proxyServer+" !\n")
|
| 1054 |
pass
|
| 1055 |
|
| 1056 |
# cache proxy validity
|
| 1057 |
self.proxyValid=1
|
| 1058 |
return
|
| 1059 |
|
| 1060 |
def configOpt_(self):
|
| 1061 |
edg_ui_cfg_opt = ' '
|
| 1062 |
if self.edg_config:
|
| 1063 |
edg_ui_cfg_opt = ' -c ' + self.edg_config + ' '
|
| 1064 |
if self.edg_config_vo:
|
| 1065 |
edg_ui_cfg_opt += ' --config-vo ' + self.edg_config_vo + ' '
|
| 1066 |
return edg_ui_cfg_opt
|
| 1067 |
|
| 1068 |
def submitTout(self, list):
|
| 1069 |
return 120
|
| 1070 |
|
| 1071 |
|
