| 1 |
from Scheduler import Scheduler
|
| 2 |
from crab_logger import Logger
|
| 3 |
from crab_exceptions import *
|
| 4 |
from crab_util import *
|
| 5 |
from EdgConfig import *
|
| 6 |
import common
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| 7 |
|
| 8 |
import os, sys, time
|
| 9 |
|
| 10 |
class SchedulerEdg(Scheduler):
|
| 11 |
def __init__(self):
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| 12 |
Scheduler.__init__(self,"EDG")
|
| 13 |
self.states = [ "Acl", "cancelReason", "cancelling","ce_node","children", \
|
| 14 |
"children_hist","children_num","children_states","condorId","condor_jdl", \
|
| 15 |
"cpuTime","destination", "done_code","exit_code","expectFrom", \
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| 16 |
"expectUpdate","globusId","jdl","jobId","jobtype", \
|
| 17 |
"lastUpdateTime","localId","location", "matched_jdl","network_server", \
|
| 18 |
"owner","parent_job", "reason","resubmitted","rsl","seed",\
|
| 19 |
"stateEnterTime","stateEnterTimes","subjob_failed", \
|
| 20 |
"user tags" , "status" , "status_code","hierarchy"]
|
| 21 |
return
|
| 22 |
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| 23 |
def configure(self, cfg_params):
|
| 24 |
|
| 25 |
try:
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| 26 |
RB = cfg_params["EDG.rb"]
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| 27 |
edgConfig = EdgConfig(RB)
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| 28 |
self.edg_config = edgConfig.config()
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| 29 |
self.edg_config_vo = edgConfig.configVO()
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| 30 |
except KeyError:
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| 31 |
self.edg_config = ''
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| 32 |
self.edg_config_vo = ''
|
| 33 |
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| 34 |
try:
|
| 35 |
self.proxyServer = cfg_params["EDG.proxy_server"]
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| 36 |
except KeyError:
|
| 37 |
self.proxyServer = 'myproxy.cern.ch'
|
| 38 |
common.logger.debug(5,'Setting myproxy server to '+self.proxyServer)
|
| 39 |
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| 40 |
try: self.LCG_version = cfg_params["EDG.lcg_version"]
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| 41 |
except KeyError: self.LCG_version = '2'
|
| 42 |
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| 43 |
try: self.EDG_requirements = cfg_params['EDG.requirements']
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| 44 |
except KeyError: self.EDG_requirements = ''
|
| 45 |
|
| 46 |
try: self.EDG_retry_count = cfg_params['EDG.retry_count']
|
| 47 |
except KeyError: self.EDG_retry_count = ''
|
| 48 |
|
| 49 |
try:
|
| 50 |
self.EDG_ce_black_list = cfg_params['EDG.ce_black_list']
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| 51 |
#print "self.EDG_ce_black_list = ", self.EDG_ce_black_list
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| 52 |
except KeyError:
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| 53 |
self.EDG_ce_black_list = ''
|
| 54 |
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| 55 |
try:
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| 56 |
self.EDG_ce_white_list = cfg_params['EDG.ce_white_list']
|
| 57 |
#print "self.EDG_ce_white_list = ", self.EDG_ce_white_list
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| 58 |
except KeyError: self.EDG_ce_white_list = ''
|
| 59 |
|
| 60 |
try: self.VO = cfg_params['EDG.virtual_organization']
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| 61 |
except KeyError: self.VO = 'cms'
|
| 62 |
|
| 63 |
try: self.return_data = cfg_params['USER.return_data']
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| 64 |
except KeyError: self.return_data = 1
|
| 65 |
|
| 66 |
try:
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| 67 |
self.copy_input_data = common.analisys_common_info['copy_input_data']
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#print "self.copy_input_data = ", self.copy_input_data
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| 69 |
except KeyError: self.copy_input_data = 0
|
| 70 |
|
| 71 |
try:
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| 72 |
self.copy_data = cfg_params["USER.copy_data"]
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| 73 |
if int(self.copy_data) == 1:
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| 74 |
try:
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| 75 |
self.SE = cfg_params['USER.storage_element']
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| 76 |
self.SE_PATH = cfg_params['USER.storage_path']
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except KeyError:
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msg = "Error. The [USER] section does not have 'storage_element'"
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msg = msg + " and/or 'storage_path' entries, necessary to copy the output"
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common.logger.message(msg)
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raise CrabException(msg)
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except KeyError: self.copy_data = 0
|
| 83 |
|
| 84 |
if ( int(self.return_data) == 0 and int(self.copy_data) == 0 ):
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| 85 |
msg = 'Warning: return_data = 0 and copy_data = 0 ==> your exe output will be lost\n'
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| 86 |
msg = msg + 'Please modify return_data and copy_data value in your crab.cfg file\n'
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| 87 |
raise CrabException(msg)
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| 88 |
|
| 89 |
try:
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| 90 |
self.lfc_host = cfg_params['EDG.lfc_host']
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| 91 |
except KeyError:
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msg = "Error. The [EDG] section does not have 'lfc_host' value"
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msg = msg + " it's necessary to know the LFC host name"
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common.logger.message(msg)
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raise CrabException(msg)
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| 96 |
try:
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| 97 |
self.lcg_catalog_type = cfg_params['EDG.lcg_catalog_type']
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| 98 |
except KeyError:
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msg = "Error. The [EDG] section does not have 'lcg_catalog_type' value"
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msg = msg + " it's necessary to know the catalog type"
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common.logger.message(msg)
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| 102 |
raise CrabException(msg)
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try:
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| 104 |
self.lfc_home = cfg_params['EDG.lfc_home']
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except KeyError:
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| 106 |
msg = "Error. The [EDG] section does not have 'lfc_home' value"
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| 107 |
msg = msg + " it's necessary to know the home catalog dir"
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common.logger.message(msg)
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| 109 |
raise CrabException(msg)
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| 110 |
|
| 111 |
try:
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| 112 |
self.register_data = cfg_params["USER.register_data"]
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| 113 |
if int(self.register_data) == 1:
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| 114 |
try:
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| 115 |
self.LFN = cfg_params['USER.lfn_dir']
|
| 116 |
except KeyError:
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| 117 |
msg = "Error. The [USER] section does not have 'lfn_dir' value"
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| 118 |
msg = msg + " it's necessary for LCF registration"
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common.logger.message(msg)
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raise CrabException(msg)
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except KeyError: self.register_data = 0
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| 122 |
|
| 123 |
if ( int(self.copy_data) == 0 and int(self.register_data) == 1 ):
|
| 124 |
msg = 'Warning: register_data = 1 must be used with copy_data = 1\n'
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| 125 |
msg = msg + 'Please modify copy_data value in your crab.cfg file\n'
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| 126 |
common.logger.message(msg)
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| 127 |
raise CrabException(msg)
|
| 128 |
|
| 129 |
try: self.EDG_requirements = cfg_params['EDG.requirements']
|
| 130 |
except KeyError: self.EDG_requirements = ''
|
| 131 |
|
| 132 |
try: self.EDG_retry_count = cfg_params['EDG.retry_count']
|
| 133 |
except KeyError: self.EDG_retry_count = ''
|
| 134 |
|
| 135 |
try: self.EDG_clock_time = cfg_params['EDG.max_wall_clock_time']
|
| 136 |
except KeyError: self.EDG_clock_time= ''
|
| 137 |
|
| 138 |
try: self.EDG_cpu_time = cfg_params['EDG.max_cpu_time']
|
| 139 |
except KeyError: self.EDG_cpu_time = ''
|
| 140 |
|
| 141 |
# Add EDG_WL_LOCATION to the python path
|
| 142 |
|
| 143 |
try:
|
| 144 |
path = os.environ['EDG_WL_LOCATION']
|
| 145 |
except:
|
| 146 |
msg = "Error: the EDG_WL_LOCATION variable is not set."
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| 147 |
raise CrabException(msg)
|
| 148 |
|
| 149 |
libPath=os.path.join(path, "lib")
|
| 150 |
sys.path.append(libPath)
|
| 151 |
libPath=os.path.join(path, "lib", "python")
|
| 152 |
sys.path.append(libPath)
|
| 153 |
|
| 154 |
self.proxyValid=0
|
| 155 |
return
|
| 156 |
|
| 157 |
|
| 158 |
def sched_parameter(self):
|
| 159 |
"""
|
| 160 |
Returns file with scheduler-specific parameters
|
| 161 |
"""
|
| 162 |
|
| 163 |
if (self.edg_config and self.edg_config_vo != ''):
|
| 164 |
self.param='sched_param.clad'
|
| 165 |
param_file = open(common.work_space.shareDir()+'/'+self.param, 'w')
|
| 166 |
param_file.write('RBconfig = "'+self.edg_config+'";\n')
|
| 167 |
param_file.write('RBconfigVO = "'+self.edg_config_vo+'";')
|
| 168 |
param_file.close()
|
| 169 |
return 1
|
| 170 |
else:
|
| 171 |
return 0
|
| 172 |
|
| 173 |
def wsSetupEnvironment(self):
|
| 174 |
"""
|
| 175 |
Returns part of a job script which does scheduler-specific work.
|
| 176 |
"""
|
| 177 |
txt = ''
|
| 178 |
txt += 'echo "middleware discovery " \n'
|
| 179 |
txt += 'if [ $VO_CMS_SW_DIR ]; then\n'
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| 180 |
txt += ' middleware=LCG \n'
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| 181 |
txt += ' echo "middleware =$middleware" \n'
|
| 182 |
txt += 'elif [ $GRID3_APP_DIR ]; then\n'
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| 183 |
txt += ' middleware=OSG \n'
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| 184 |
txt += ' echo "middleware =$middleware" \n'
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| 185 |
txt += 'elif [ $OSG_APP ]; then \n'
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| 186 |
txt += ' middleware=OSG \n'
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| 187 |
txt += ' echo "middleware =$middleware" \n'
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| 188 |
txt += 'else \n'
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| 189 |
txt += ' echo "SET_CMS_ENV 1 ==> middleware not identified" \n'
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| 190 |
txt += ' echo "JOB_EXIT_STATUS = 1"\n'
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txt += ' exit 1\n'
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| 192 |
txt += 'fi\n'
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| 193 |
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| 194 |
txt += '\n\n'
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| 195 |
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| 196 |
txt += 'if [ $middleware == LCG ]; then \n'
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| 197 |
txt += ' echo "SyncGridJobId=`echo $EDG_WL_JOBID`" | tee -a $RUNTIME_AREA/$repo\n'
|
| 198 |
txt += 'fi\n'
|
| 199 |
|
| 200 |
if int(self.copy_data) == 1:
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| 201 |
if self.SE:
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| 202 |
txt += 'export SE='+self.SE+'\n'
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| 203 |
txt += 'echo "SE = $SE"\n'
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| 204 |
if self.SE_PATH:
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| 205 |
if ( self.SE_PATH[-1] != '/' ) : self.SE_PATH = self.SE_PATH + '/'
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| 206 |
txt += 'export SE_PATH='+self.SE_PATH+'\n'
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| 207 |
txt += 'echo "SE_PATH = $SE_PATH"\n'
|
| 208 |
|
| 209 |
txt += 'export VO='+self.VO+'\n'
|
| 210 |
### FEDE: add some line for LFC catalog setting
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| 211 |
txt += 'if [ $middleware == LCG ]; then \n'
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| 212 |
txt += ' if [[ $LCG_CATALOG_TYPE != \''+self.lcg_catalog_type+'\' ]]; then\n'
|
| 213 |
txt += ' export LCG_CATALOG_TYPE='+self.lcg_catalog_type+'\n'
|
| 214 |
txt += ' fi\n'
|
| 215 |
txt += ' if [[ $LFC_HOST != \''+self.lfc_host+'\' ]]; then\n'
|
| 216 |
txt += ' export LFC_HOST='+self.lfc_host+'\n'
|
| 217 |
txt += ' fi\n'
|
| 218 |
txt += ' if [[ $LFC_HOME != \''+self.lfc_home+'\' ]]; then\n'
|
| 219 |
txt += ' export LFC_HOME='+self.lfc_home+'\n'
|
| 220 |
txt += ' fi\n'
|
| 221 |
txt += 'elif [ $middleware == OSG ]; then\n'
|
| 222 |
txt += ' echo "LFC catalog setting to be implemented for OSG"\n'
|
| 223 |
txt += 'fi\n'
|
| 224 |
#####
|
| 225 |
if int(self.register_data) == 1:
|
| 226 |
txt += 'if [ $middleware == LCG ]; then \n'
|
| 227 |
txt += ' export LFN='+self.LFN+'\n'
|
| 228 |
txt += ' lfc-ls $LFN\n'
|
| 229 |
txt += ' result=$?\n'
|
| 230 |
txt += ' echo $result\n'
|
| 231 |
### creation of LFN dir in LFC catalog, under /grid/cms dir
|
| 232 |
txt += ' if [ $result != 0 ]; then\n'
|
| 233 |
txt += ' lfc-mkdir $LFN\n'
|
| 234 |
txt += ' result=$?\n'
|
| 235 |
txt += ' echo $result\n'
|
| 236 |
txt += ' fi\n'
|
| 237 |
txt += 'elif [ $middleware == OSG ]; then\n'
|
| 238 |
txt += ' echo " Files registration to be implemented for OSG"\n'
|
| 239 |
txt += 'fi\n'
|
| 240 |
txt += '\n'
|
| 241 |
|
| 242 |
if self.VO:
|
| 243 |
txt += 'export VO='+self.VO+'\n'
|
| 244 |
if self.LFN:
|
| 245 |
txt += 'if [ $middleware == LCG ]; then \n'
|
| 246 |
txt += ' export LFN='+self.LFN+'\n'
|
| 247 |
txt += 'fi\n'
|
| 248 |
txt += '\n'
|
| 249 |
|
| 250 |
txt += 'if [ $middleware == LCG ]; then\n'
|
| 251 |
txt += ' CloseCEs=`edg-brokerinfo getCE`\n'
|
| 252 |
txt += ' echo "CloseCEs = $CloseCEs"\n'
|
| 253 |
txt += ' CE=`echo $CloseCEs | sed -e "s/:.*//"`\n'
|
| 254 |
txt += ' echo "CE = $CE"\n'
|
| 255 |
txt += 'elif [ $middleware == OSG ]; then \n'
|
| 256 |
txt += ' if [ $OSG_JOB_CONTACT ]; then \n'
|
| 257 |
txt += ' CE=`echo $OSG_JOB_CONTACT | /usr/bin/awk -F\/ \'{print $1}\'` \n'
|
| 258 |
txt += ' else \n'
|
| 259 |
txt += ' echo "SET_ENV 1 ==> ERROR in setting CE name - OSG mode -" \n'
|
| 260 |
txt += ' exit 1 \n'
|
| 261 |
txt += ' fi \n'
|
| 262 |
txt += 'fi \n'
|
| 263 |
|
| 264 |
return txt
|
| 265 |
|
| 266 |
def wsCopyInput(self):
|
| 267 |
"""
|
| 268 |
Copy input data from SE to WN
|
| 269 |
"""
|
| 270 |
txt = ''
|
| 271 |
try:
|
| 272 |
self.copy_input_data = common.analisys_common_info['copy_input_data']
|
| 273 |
#print "self.copy_input_data = ", self.copy_input_data
|
| 274 |
except KeyError: self.copy_input_data = 0
|
| 275 |
if int(self.copy_input_data) == 1:
|
| 276 |
## OLI_Daniele deactivate for OSG (wait for LCG UI installed on OSG)
|
| 277 |
txt += 'if [ $middleware == OSG ]; then\n'
|
| 278 |
txt += ' #\n'
|
| 279 |
txt += ' # Copy Input Data from SE to this WN deactivated in OSG mode\n'
|
| 280 |
txt += ' #\n'
|
| 281 |
txt += ' echo "Copy Input Data from SE to this WN deactivated in OSG mode"\n'
|
| 282 |
txt += 'elif [ $middleware == LCG ]; then \n'
|
| 283 |
txt += ' #\n'
|
| 284 |
txt += ' # Copy Input Data from SE to this WN\n'
|
| 285 |
txt += ' #\n'
|
| 286 |
### changed by georgia (put a loop copying more than one input files per jobs)
|
| 287 |
txt += ' for input_file in $cur_file_list \n'
|
| 288 |
txt += ' do \n'
|
| 289 |
txt += ' lcg-cp --vo $VO lfn:$input_lfn/$input_file file:`pwd`/$input_file 2>&1\n'
|
| 290 |
txt += ' copy_input_exit_status=$?\n'
|
| 291 |
txt += ' echo "COPY_INPUT_EXIT_STATUS = $copy_input_exit_status"\n'
|
| 292 |
txt += ' if [ $copy_input_exit_status -ne 0 ]; then \n'
|
| 293 |
txt += ' echo "Problems with copying to WN" \n'
|
| 294 |
txt += ' else \n'
|
| 295 |
txt += ' echo "input copied into WN" \n'
|
| 296 |
txt += ' fi \n'
|
| 297 |
txt += ' done \n'
|
| 298 |
### copy a set of PU ntuples (same for each jobs -- but accessed randomly)
|
| 299 |
txt += ' for file in $cur_pu_list \n'
|
| 300 |
txt += ' do \n'
|
| 301 |
txt += ' lcg-cp --vo $VO lfn:$pu_lfn/$file file:`pwd`/$file 2>&1\n'
|
| 302 |
txt += ' copy_input_exit_status=$?\n'
|
| 303 |
txt += ' echo "COPY_INPUT_PU_EXIT_STATUS = $copy_input_pu_exit_status"\n'
|
| 304 |
txt += ' if [ $copy_input_pu_exit_status -ne 0 ]; then \n'
|
| 305 |
txt += ' echo "Problems with copying pu to WN" \n'
|
| 306 |
txt += ' else \n'
|
| 307 |
txt += ' echo "input pu files copied into WN" \n'
|
| 308 |
txt += ' fi \n'
|
| 309 |
txt += ' done \n'
|
| 310 |
txt += ' \n'
|
| 311 |
txt += ' ### Check SCRATCH space available on WN : \n'
|
| 312 |
txt += ' df -h \n'
|
| 313 |
txt += 'fi \n'
|
| 314 |
|
| 315 |
return txt
|
| 316 |
|
| 317 |
def wsCopyOutput(self):
|
| 318 |
"""
|
| 319 |
Write a CopyResults part of a job script, e.g.
|
| 320 |
to copy produced output into a storage element.
|
| 321 |
"""
|
| 322 |
txt = ''
|
| 323 |
if int(self.copy_data) == 1:
|
| 324 |
txt += '#\n'
|
| 325 |
txt += '# Copy output to SE = $SE\n'
|
| 326 |
txt += '#\n'
|
| 327 |
txt += 'if [ $exe_result -eq 0 ]; then\n'
|
| 328 |
txt += ' for out_file in $file_list ; do\n'
|
| 329 |
txt += ' echo "Trying to copy output file to $SE "\n'
|
| 330 |
## OLI_Daniele globus-* for OSG, lcg-* for LCG
|
| 331 |
txt += ' if [ $middleware == OSG ]; then\n'
|
| 332 |
txt += ' echo "globus-url-copy file://`pwd`/$out_file gsiftp://${SE}${SE_PATH}$out_file"\n'
|
| 333 |
txt += ' copy_exit_status=`globus-url-copy file://\`pwd\`/$out_file gsiftp://${SE}${SE_PATH}$out_file 2>&1`\n'
|
| 334 |
#txt += ' exitstring=`globus-url-copy file://\`pwd\`/$out_file gsiftp://${SE}${SE_PATH}$out_file 2>&1`\n'
|
| 335 |
txt += ' elif [ $middleware == LCG ]; then \n'
|
| 336 |
txt += ' echo "lcg-cp --vo cms -t 1200 file://`pwd`/$out_file gsiftp://${SE}${SE_PATH}$out_file"\n'
|
| 337 |
txt += ' copy_exit_status=`lcg-cp --vo cms -t 1200 file://\`pwd\`/$out_file gsiftp://${SE}${SE_PATH}$out_file 2>&1`\n'
|
| 338 |
#txt += ' exitstring=`lcg-cp --vo cms -t 30 file://\`pwd\`/$out_file gsiftp://${SE}${SE_PATH}$out_file 2>&1`\n'
|
| 339 |
txt += ' fi \n'
|
| 340 |
#txt += ' copy_exit_status=$?\n'
|
| 341 |
txt += ' echo "COPY_EXIT_STATUS = $copy_exit_status"\n'
|
| 342 |
txt += ' echo "STAGE_OUT = $copy_exit_status"\n'
|
| 343 |
txt += ' if [ $copy_exit_status -ne 0 ]; then\n'
|
| 344 |
txt += ' echo "Problems with SE = $SE"\n'
|
| 345 |
txt += ' echo "StageOutExitStatus = 198" | tee -a $RUNTIME_AREA/$repo\n'
|
| 346 |
txt += ' echo "StageOutExitStatusReason = $exitstring" | tee -a $RUNTIME_AREA/$repo\n'
|
| 347 |
txt += ' else\n'
|
| 348 |
txt += ' echo "StageOutSE = $SE" | tee -a $RUNTIME_AREA/$repo\n'
|
| 349 |
txt += ' echo "StageOutCatalog = " | tee -a $RUNTIME_AREA/$repo\n'
|
| 350 |
txt += ' echo "output copied into $SE/$SE_PATH directory"\n'
|
| 351 |
txt += ' echo "StageOutExitStatus = 0" | tee -a $RUNTIME_AREA/$repo\n'
|
| 352 |
txt += ' fi\n'
|
| 353 |
txt += ' done\n'
|
| 354 |
txt += 'fi\n'
|
| 355 |
return txt
|
| 356 |
|
| 357 |
def wsRegisterOutput(self):
|
| 358 |
"""
|
| 359 |
Returns part of a job script which does scheduler-specific work.
|
| 360 |
"""
|
| 361 |
|
| 362 |
txt = ''
|
| 363 |
if int(self.register_data) == 1:
|
| 364 |
## OLI_Daniele deactivate for OSG (wait for LCG UI installed on OSG)
|
| 365 |
txt += 'if [ $middleware == OSG ]; then\n'
|
| 366 |
txt += ' #\n'
|
| 367 |
txt += ' # Register output to LFC deactivated in OSG mode\n'
|
| 368 |
txt += ' #\n'
|
| 369 |
txt += ' echo "Register output to LFC deactivated in OSG mode"\n'
|
| 370 |
txt += 'elif [ $middleware == LCG ]; then \n'
|
| 371 |
txt += '#\n'
|
| 372 |
txt += '# Register output to LFC\n'
|
| 373 |
txt += '#\n'
|
| 374 |
txt += ' if [[ $exe_result -eq 0 && $copy_exit_status -eq 0 ]]; then\n'
|
| 375 |
txt += ' for out_file in $file_list ; do\n'
|
| 376 |
txt += ' echo "Trying to register the output file into LFC"\n'
|
| 377 |
txt += ' echo "lcg-rf -l $LFN/$out_file --vo $VO sfn://$SE$SE_PATH/$out_file"\n'
|
| 378 |
txt += ' lcg-rf -l $LFN/$out_file --vo $VO sfn://$SE$SE_PATH/$out_file 2>&1 \n'
|
| 379 |
txt += ' register_exit_status=$?\n'
|
| 380 |
txt += ' echo "REGISTER_EXIT_STATUS = $register_exit_status"\n'
|
| 381 |
txt += ' echo "STAGE_OUT = $register_exit_status"\n'
|
| 382 |
txt += ' if [ $register_exit_status -ne 0 ]; then \n'
|
| 383 |
txt += ' echo "Problems with the registration to LFC" \n'
|
| 384 |
txt += ' echo "Try with srm protocol" \n'
|
| 385 |
txt += ' echo "lcg-rf -l $LFN/$out_file --vo $VO srm://$SE$SE_PATH/$out_file"\n'
|
| 386 |
txt += ' lcg-rf -l $LFN/$out_file --vo $VO srm://$SE$SE_PATH/$out_file 2>&1 \n'
|
| 387 |
txt += ' register_exit_status=$?\n'
|
| 388 |
txt += ' echo "REGISTER_EXIT_STATUS = $register_exit_status"\n'
|
| 389 |
txt += ' echo "STAGE_OUT = $register_exit_status"\n'
|
| 390 |
txt += ' if [ $register_exit_status -ne 0 ]; then \n'
|
| 391 |
txt += ' echo "Problems with the registration into LFC" \n'
|
| 392 |
txt += ' fi \n'
|
| 393 |
txt += ' else \n'
|
| 394 |
txt += ' echo "output registered to LFC"\n'
|
| 395 |
txt += ' fi \n'
|
| 396 |
txt += ' echo "StageOutExitStatus = $register_exit_status" | tee -a $RUNTIME_AREA/$repo\n'
|
| 397 |
txt += ' done\n'
|
| 398 |
txt += ' elif [[ $exe_result -eq 0 && $copy_exit_status -ne 0 ]]; then \n'
|
| 399 |
txt += ' echo "Trying to copy output file to CloseSE"\n'
|
| 400 |
txt += ' CLOSE_SE=`edg-brokerinfo getCloseSEs | head -1`\n'
|
| 401 |
txt += ' for out_file in $file_list ; do\n'
|
| 402 |
txt += ' echo "lcg-cr -v -l lfn:${LFN}/$out_file -d $CLOSE_SE -P $LFN/$out_file --vo $VO file://`pwd`/$out_file" \n'
|
| 403 |
txt += ' lcg-cr -v -l lfn:${LFN}/$out_file -d $CLOSE_SE -P $LFN/$out_file --vo $VO file://`pwd`/$out_file 2>&1 \n'
|
| 404 |
txt += ' register_exit_status=$?\n'
|
| 405 |
txt += ' echo "REGISTER_EXIT_STATUS = $register_exit_status"\n'
|
| 406 |
txt += ' echo "STAGE_OUT = $register_exit_status"\n'
|
| 407 |
txt += ' if [ $register_exit_status -ne 0 ]; then \n'
|
| 408 |
txt += ' echo "Problems with CloseSE" \n'
|
| 409 |
txt += ' else \n'
|
| 410 |
txt += ' echo "The program was successfully executed"\n'
|
| 411 |
txt += ' echo "SE = $CLOSE_SE"\n'
|
| 412 |
txt += ' echo "LFN for the file is LFN=${LFN}/$out_file"\n'
|
| 413 |
txt += ' fi \n'
|
| 414 |
txt += ' echo "StageOutExitStatus = $register_exit_status" | tee -a $RUNTIME_AREA/$repo\n'
|
| 415 |
txt += ' done\n'
|
| 416 |
txt += ' else\n'
|
| 417 |
txt += ' echo "Problem with the executable"\n'
|
| 418 |
txt += ' fi \n'
|
| 419 |
txt += 'fi \n'
|
| 420 |
return txt
|
| 421 |
|
| 422 |
def loggingInfo(self, id):
|
| 423 |
"""
|
| 424 |
retrieve the logging info from logging and bookkeeping and return it
|
| 425 |
"""
|
| 426 |
self.checkProxy()
|
| 427 |
cmd = 'edg-job-get-logging-info -v 2 ' + id
|
| 428 |
#cmd_out = os.popen(cmd)
|
| 429 |
cmd_out = runCommand(cmd)
|
| 430 |
return cmd_out
|
| 431 |
|
| 432 |
def listMatch(self, nj):
|
| 433 |
"""
|
| 434 |
Check the compatibility of available resources
|
| 435 |
"""
|
| 436 |
self.checkProxy()
|
| 437 |
jdl = common.job_list[nj].jdlFilename()
|
| 438 |
cmd = 'edg-job-list-match ' + self.configOpt_() + jdl
|
| 439 |
cmd_out = runCommand(cmd,0,10)
|
| 440 |
if not cmd_out:
|
| 441 |
raise CrabException("ERROR: "+cmd+" failed!")
|
| 442 |
|
| 443 |
return self.parseListMatch_(cmd_out, jdl)
|
| 444 |
|
| 445 |
def parseListMatch_(self, out, jdl):
|
| 446 |
"""
|
| 447 |
Parse the f* output of edg-list-match and produce something sensible
|
| 448 |
"""
|
| 449 |
reComment = re.compile( r'^\**$' )
|
| 450 |
reEmptyLine = re.compile( r'^$' )
|
| 451 |
reVO = re.compile( r'Selected Virtual Organisation name.*' )
|
| 452 |
reLine = re.compile( r'.*')
|
| 453 |
reCE = re.compile( r'(.*:.*)')
|
| 454 |
reCEId = re.compile( r'CEId.*')
|
| 455 |
reNO = re.compile( r'No Computing Element matching' )
|
| 456 |
reRB = re.compile( r'Connecting to host' )
|
| 457 |
next = 0
|
| 458 |
CEs=[]
|
| 459 |
Match=0
|
| 460 |
|
| 461 |
#print out
|
| 462 |
lines = reLine.findall(out)
|
| 463 |
|
| 464 |
i=0
|
| 465 |
CEs=[]
|
| 466 |
for line in lines:
|
| 467 |
string.strip(line)
|
| 468 |
#print line
|
| 469 |
if reNO.match( line ):
|
| 470 |
common.logger.debug(5,line)
|
| 471 |
return 0
|
| 472 |
pass
|
| 473 |
if reVO.match( line ):
|
| 474 |
VO =reVO.match( line ).group()
|
| 475 |
common.logger.debug(5,"VO "+VO)
|
| 476 |
pass
|
| 477 |
|
| 478 |
if reRB.match( line ):
|
| 479 |
RB = reRB.match(line).group()
|
| 480 |
common.logger.debug(5,"RB "+RB)
|
| 481 |
pass
|
| 482 |
|
| 483 |
if reCEId.search( line ):
|
| 484 |
for lineCE in lines[i:-1]:
|
| 485 |
if reCE.match( lineCE ):
|
| 486 |
CE = string.strip(reCE.search(lineCE).group(1))
|
| 487 |
CEs.append(CE.split(':')[0])
|
| 488 |
pass
|
| 489 |
pass
|
| 490 |
pass
|
| 491 |
i=i+1
|
| 492 |
pass
|
| 493 |
|
| 494 |
common.logger.debug(5,"All CE :"+str(CEs))
|
| 495 |
|
| 496 |
sites = []
|
| 497 |
[sites.append(it) for it in CEs if not sites.count(it)]
|
| 498 |
|
| 499 |
common.logger.debug(5,"All Sites :"+str(sites))
|
| 500 |
return len(sites)
|
| 501 |
|
| 502 |
def noMatchFound_(self, jdl):
|
| 503 |
reReq = re.compile( r'Requirements' )
|
| 504 |
reString = re.compile( r'"\S*"' )
|
| 505 |
f = file(jdl,'r')
|
| 506 |
for line in f.readlines():
|
| 507 |
line= line.strip()
|
| 508 |
if reReq.match(line):
|
| 509 |
for req in reString.findall(line):
|
| 510 |
if re.search("VO",req):
|
| 511 |
common.logger.message( "SW required: "+req)
|
| 512 |
continue
|
| 513 |
if re.search('"\d+',req):
|
| 514 |
common.logger.message("Other req : "+req)
|
| 515 |
continue
|
| 516 |
common.logger.message( "CE required: "+req)
|
| 517 |
break
|
| 518 |
pass
|
| 519 |
raise CrabException("No compatible resources found!")
|
| 520 |
|
| 521 |
def submit(self, nj):
|
| 522 |
"""
|
| 523 |
Submit one EDG job.
|
| 524 |
"""
|
| 525 |
|
| 526 |
self.checkProxy()
|
| 527 |
jid = None
|
| 528 |
jdl = common.job_list[nj].jdlFilename()
|
| 529 |
|
| 530 |
cmd = 'edg-job-submit ' + self.configOpt_() + jdl
|
| 531 |
cmd_out = runCommand(cmd)
|
| 532 |
if cmd_out != None:
|
| 533 |
reSid = re.compile( r'https.+' )
|
| 534 |
jid = reSid.search(cmd_out).group()
|
| 535 |
pass
|
| 536 |
return jid
|
| 537 |
|
| 538 |
def resubmit(self, nj_list):
|
| 539 |
"""
|
| 540 |
Prepare jobs to be submit
|
| 541 |
"""
|
| 542 |
return
|
| 543 |
|
| 544 |
def getExitStatus(self, id):
|
| 545 |
return self.getStatusAttribute_(id, 'exit_code')
|
| 546 |
|
| 547 |
def queryStatus(self, id):
|
| 548 |
return self.getStatusAttribute_(id, 'status')
|
| 549 |
|
| 550 |
def queryDest(self, id):
|
| 551 |
return self.getStatusAttribute_(id, 'destination')
|
| 552 |
|
| 553 |
|
| 554 |
def getStatusAttribute_(self, id, attr):
|
| 555 |
""" Query a status of the job with id """
|
| 556 |
|
| 557 |
self.checkProxy()
|
| 558 |
hstates = {}
|
| 559 |
Status = importName('edg_wl_userinterface_common_LbWrapper', 'Status')
|
| 560 |
# Bypass edg-job-status interfacing directly to C++ API
|
| 561 |
# Job attribute vector to retrieve status without edg-job-status
|
| 562 |
level = 0
|
| 563 |
# Instance of the Status class provided by LB API
|
| 564 |
jobStat = Status()
|
| 565 |
st = 0
|
| 566 |
jobStat.getStatus(id, level)
|
| 567 |
err, apiMsg = jobStat.get_error()
|
| 568 |
if err:
|
| 569 |
common.logger.debug(5,'Error caught' + apiMsg)
|
| 570 |
return None
|
| 571 |
else:
|
| 572 |
for i in range(len(self.states)):
|
| 573 |
# Fill an hash table with all information retrieved from LB API
|
| 574 |
hstates[ self.states[i] ] = jobStat.loadStatus(st)[i]
|
| 575 |
result = jobStat.loadStatus(st)[ self.states.index(attr) ]
|
| 576 |
return result
|
| 577 |
|
| 578 |
def queryDetailedStatus(self, id):
|
| 579 |
""" Query a detailed status of the job with id """
|
| 580 |
cmd = 'edg-job-status '+id
|
| 581 |
cmd_out = runCommand(cmd)
|
| 582 |
return cmd_out
|
| 583 |
|
| 584 |
def getOutput(self, id):
|
| 585 |
"""
|
| 586 |
Get output for a finished job with id.
|
| 587 |
Returns the name of directory with results.
|
| 588 |
"""
|
| 589 |
|
| 590 |
self.checkProxy()
|
| 591 |
cmd = 'edg-job-get-output --dir ' + common.work_space.resDir() + ' ' + id
|
| 592 |
cmd_out = runCommand(cmd)
|
| 593 |
|
| 594 |
# Determine the output directory name
|
| 595 |
dir = common.work_space.resDir()
|
| 596 |
dir += os.environ['USER']
|
| 597 |
dir += '_' + os.path.basename(id)
|
| 598 |
return dir
|
| 599 |
|
| 600 |
def cancel(self, id):
|
| 601 |
""" Cancel the EDG job with id """
|
| 602 |
self.checkProxy()
|
| 603 |
cmd = 'edg-job-cancel --noint ' + id
|
| 604 |
cmd_out = runCommand(cmd)
|
| 605 |
return cmd_out
|
| 606 |
|
| 607 |
def createSchScript(self, nj):
|
| 608 |
"""
|
| 609 |
Create a JDL-file for EDG.
|
| 610 |
"""
|
| 611 |
|
| 612 |
job = common.job_list[nj]
|
| 613 |
jbt = job.type()
|
| 614 |
inp_sandbox = jbt.inputSandbox(nj)
|
| 615 |
out_sandbox = jbt.outputSandbox(nj)
|
| 616 |
inp_storage_subdir = ''
|
| 617 |
|
| 618 |
title = '# This JDL was generated by '+\
|
| 619 |
common.prog_name+' (version '+common.prog_version_str+')\n'
|
| 620 |
jt_string = ''
|
| 621 |
|
| 622 |
|
| 623 |
|
| 624 |
SPL = inp_storage_subdir
|
| 625 |
if ( SPL and SPL[-1] != '/' ) : SPL = SPL + '/'
|
| 626 |
|
| 627 |
jdl_fname = job.jdlFilename()
|
| 628 |
jdl = open(jdl_fname, 'w')
|
| 629 |
jdl.write(title)
|
| 630 |
|
| 631 |
script = job.scriptFilename()
|
| 632 |
jdl.write('Executable = "' + os.path.basename(script) +'";\n')
|
| 633 |
jdl.write(jt_string)
|
| 634 |
|
| 635 |
### only one .sh JDL has arguments:
|
| 636 |
firstEvent = common.jobDB.firstEvent(nj)
|
| 637 |
maxEvents = common.jobDB.maxEvents(nj)
|
| 638 |
jdl.write('Arguments = "' + str(nj+1)+' '+str(firstEvent)+' '+str(maxEvents)+'";\n')
|
| 639 |
|
| 640 |
inp_box = 'InputSandbox = { '
|
| 641 |
inp_box = inp_box + '"' + script + '",'
|
| 642 |
|
| 643 |
if inp_sandbox != None:
|
| 644 |
for fl in inp_sandbox:
|
| 645 |
inp_box = inp_box + ' "' + fl + '",'
|
| 646 |
pass
|
| 647 |
pass
|
| 648 |
|
| 649 |
#if common.use_jam:
|
| 650 |
# inp_box = inp_box+' "'+common.bin_dir+'/'+common.run_jam+'",'
|
| 651 |
|
| 652 |
# Marco (VERY TEMPORARY ML STUFF)
|
| 653 |
inp_box = inp_box+' "' + os.path.abspath(os.environ['CRABDIR']+'/python/'+'report.py') + '", "' +\
|
| 654 |
os.path.abspath(os.environ['CRABDIR']+'/python/'+'DashboardAPI.py') + '", "'+\
|
| 655 |
os.path.abspath(os.environ['CRABDIR']+'/python/'+'Logger.py') + '", "'+\
|
| 656 |
os.path.abspath(os.environ['CRABDIR']+'/python/'+'ProcInfo.py') + '", "'+\
|
| 657 |
os.path.abspath(os.environ['CRABDIR']+'/python/'+'apmon.py') + '"'
|
| 658 |
# End Marco
|
| 659 |
|
| 660 |
if (not jbt.additional_inbox_files == []):
|
| 661 |
inp_box = inp_box + ', '
|
| 662 |
for addFile in jbt.additional_inbox_files:
|
| 663 |
addFile = os.path.abspath(addFile)
|
| 664 |
inp_box = inp_box+' "'+addFile+'",'
|
| 665 |
pass
|
| 666 |
|
| 667 |
if inp_box[-1] == ',' : inp_box = inp_box[:-1]
|
| 668 |
inp_box = inp_box + ' };\n'
|
| 669 |
jdl.write(inp_box)
|
| 670 |
|
| 671 |
jdl.write('StdOutput = "' + job.stdout() + '";\n')
|
| 672 |
jdl.write('StdError = "' + job.stderr() + '";\n')
|
| 673 |
|
| 674 |
|
| 675 |
if job.stdout() == job.stderr():
|
| 676 |
out_box = 'OutputSandbox = { "' + \
|
| 677 |
job.stdout() + '", ".BrokerInfo",'
|
| 678 |
else:
|
| 679 |
out_box = 'OutputSandbox = { "' + \
|
| 680 |
job.stdout() + '", "' + \
|
| 681 |
job.stderr() + '", ".BrokerInfo",'
|
| 682 |
|
| 683 |
if int(self.return_data) == 1:
|
| 684 |
if out_sandbox != None:
|
| 685 |
for fl in out_sandbox:
|
| 686 |
out_box = out_box + ' "' + fl + '",'
|
| 687 |
pass
|
| 688 |
pass
|
| 689 |
pass
|
| 690 |
|
| 691 |
if out_box[-1] == ',' : out_box = out_box[:-1]
|
| 692 |
out_box = out_box + ' };'
|
| 693 |
jdl.write(out_box+'\n')
|
| 694 |
|
| 695 |
|
| 696 |
req='Requirements = '
|
| 697 |
req = req + jbt.getRequirements()
|
| 698 |
# ### if at least a CE exists ...
|
| 699 |
# if common.analisys_common_info['sites']:
|
| 700 |
# if common.analisys_common_info['sw_version']:
|
| 701 |
# req='Requirements = '
|
| 702 |
# req=req + 'Member("VO-cms-' + \
|
| 703 |
# common.analisys_common_info['sw_version'] + \
|
| 704 |
# '", other.GlueHostApplicationSoftwareRunTimeEnvironment)'
|
| 705 |
# if len(common.analisys_common_info['sites'])>0:
|
| 706 |
# req = req + ' && ('
|
| 707 |
# for i in range(len(common.analisys_common_info['sites'])):
|
| 708 |
# req = req + 'other.GlueCEInfoHostName == "' \
|
| 709 |
# + common.analisys_common_info['sites'][i] + '"'
|
| 710 |
# if ( i < (int(len(common.analisys_common_info['sites']) - 1)) ):
|
| 711 |
# req = req + ' || '
|
| 712 |
# req = req + ')'
|
| 713 |
#### and USER REQUIREMENT
|
| 714 |
if self.EDG_requirements:
|
| 715 |
if (req == 'Requirement = '):
|
| 716 |
req = req + self.EDG_requirements
|
| 717 |
else:
|
| 718 |
req = req + ' && ' + self.EDG_requirements
|
| 719 |
#### FEDE #####
|
| 720 |
if self.EDG_ce_white_list:
|
| 721 |
ce_white_list = string.split(self.EDG_ce_white_list,',')
|
| 722 |
#print "req = ", req
|
| 723 |
for i in range(len(ce_white_list)):
|
| 724 |
if i == 0:
|
| 725 |
if (req == 'Requirement = '):
|
| 726 |
req = req + '((RegExp("' + ce_white_list[i] + '", other.GlueCEUniqueId))'
|
| 727 |
else:
|
| 728 |
req = req + ' && ((RegExp("' + ce_white_list[i] + '", other.GlueCEUniqueId))'
|
| 729 |
pass
|
| 730 |
else:
|
| 731 |
req = req + ' || (RegExp("' + ce_white_list[i] + '", other.GlueCEUniqueId))'
|
| 732 |
req = req + ')'
|
| 733 |
|
| 734 |
if self.EDG_ce_black_list:
|
| 735 |
ce_black_list = string.split(self.EDG_ce_black_list,',')
|
| 736 |
for ce in ce_black_list:
|
| 737 |
if (req == 'Requirement = '):
|
| 738 |
req = req + '(!RegExp("' + ce + '", other.GlueCEUniqueId))'
|
| 739 |
else:
|
| 740 |
req = req + ' && (!RegExp("' + ce + '", other.GlueCEUniqueId))'
|
| 741 |
pass
|
| 742 |
###############
|
| 743 |
if self.EDG_clock_time:
|
| 744 |
if (req == 'Requirement = '):
|
| 745 |
req = req + 'other.GlueCEPolicyMaxWallClockTime>='+self.EDG_clock_time
|
| 746 |
else:
|
| 747 |
req = req + ' && other.GlueCEPolicyMaxWallClockTime>='+self.EDG_clock_time
|
| 748 |
|
| 749 |
if self.EDG_cpu_time:
|
| 750 |
if (req == 'Requirement = '):
|
| 751 |
req = req + ' other.GlueCEPolicyMaxCPUTime>='+self.EDG_cpu_time
|
| 752 |
else:
|
| 753 |
req = req + ' && other.GlueCEPolicyMaxCPUTime>='+self.EDG_cpu_time
|
| 754 |
if (req != 'Requirement = '):
|
| 755 |
req = req + ';\n'
|
| 756 |
jdl.write(req)
|
| 757 |
|
| 758 |
jdl.write('VirtualOrganisation = "' + self.VO + '";\n')
|
| 759 |
|
| 760 |
if ( self.EDG_retry_count ):
|
| 761 |
jdl.write('RetryCount = '+self.EDG_retry_count+';\n')
|
| 762 |
pass
|
| 763 |
|
| 764 |
jdl.write('MyProxyServer = "' + self.proxyServer + '";\n')
|
| 765 |
|
| 766 |
jdl.close()
|
| 767 |
return
|
| 768 |
|
| 769 |
def checkProxy(self):
|
| 770 |
"""
|
| 771 |
Function to check the Globus proxy.
|
| 772 |
"""
|
| 773 |
if (self.proxyValid): return
|
| 774 |
timeleft = -999
|
| 775 |
minTimeLeft=10*3600 # in seconds
|
| 776 |
|
| 777 |
minTimeLeftServer = 100 # in hours
|
| 778 |
|
| 779 |
#cmd = 'voms-proxy-info -exists -valid '+str(minTimeLeft)+':00'
|
| 780 |
#cmd = 'voms-proxy-info -timeleft'
|
| 781 |
mustRenew = 0
|
| 782 |
timeLeftLocal = runCommand('voms-proxy-info -timeleft')
|
| 783 |
timeLeftServer = -999
|
| 784 |
if not timeLeftLocal or int(timeLeftLocal) <= 0 or not isInt(timeLeftLocal):
|
| 785 |
mustRenew = 1
|
| 786 |
else:
|
| 787 |
timeLeftServer = runCommand('voms-proxy-info -actimeleft | head -1')
|
| 788 |
if not timeLeftServer or not isInt(timeLeftServer):
|
| 789 |
mustRenew = 1
|
| 790 |
elif timeLeftLocal<minTimeLeft or timeLeftServer<minTimeLeft:
|
| 791 |
mustRenew = 1
|
| 792 |
pass
|
| 793 |
pass
|
| 794 |
|
| 795 |
if mustRenew:
|
| 796 |
common.logger.message( "No valid proxy found or timeleft too short!\n Creating a user proxy with default length of 24h\n")
|
| 797 |
cmd = 'voms-proxy-init -voms cms -valid 24:00'
|
| 798 |
try:
|
| 799 |
# SL as above: damn it!
|
| 800 |
out = os.system(cmd)
|
| 801 |
if (out>0): raise CrabException("Unable to create a valid proxy!\n")
|
| 802 |
except:
|
| 803 |
msg = "Unable to create a valid proxy!\n"
|
| 804 |
raise CrabException(msg)
|
| 805 |
# cmd = 'grid-proxy-info -timeleft'
|
| 806 |
# cmd_out = runCommand(cmd,0,20)
|
| 807 |
pass
|
| 808 |
|
| 809 |
## now I do have a voms proxy valid, and I check the myproxy server
|
| 810 |
renewProxy = 0
|
| 811 |
cmd = 'myproxy-info -d -s '+self.proxyServer
|
| 812 |
cmd_out = runCommand(cmd,0,20)
|
| 813 |
if not cmd_out:
|
| 814 |
common.logger.message('No credential delegated to myproxy server '+self.proxyServer+' will do now')
|
| 815 |
renewProxy = 1
|
| 816 |
else:
|
| 817 |
# if myproxy exist but not long enough, renew
|
| 818 |
reTime = re.compile( r'timeleft: (\d+)' )
|
| 819 |
#print "<"+str(reTime.search( cmd_out ).group(1))+">"
|
| 820 |
if reTime.match( cmd_out ):
|
| 821 |
time = reTime.search( line ).group(1)
|
| 822 |
if time < minTimeLeftServer:
|
| 823 |
renewProxy = 1
|
| 824 |
common.logger.message('No credential delegation will expire in '+time+' hours: renew it')
|
| 825 |
pass
|
| 826 |
pass
|
| 827 |
|
| 828 |
# if not, create one.
|
| 829 |
if renewProxy:
|
| 830 |
cmd = 'myproxy-init -d -n -s '+self.proxyServer
|
| 831 |
out = os.system(cmd)
|
| 832 |
if (out>0):
|
| 833 |
raise CrabException("Unable to delegate the proxy to myproxyserver "+self.proxyServer+" !\n")
|
| 834 |
pass
|
| 835 |
|
| 836 |
# cache proxy validity
|
| 837 |
self.proxyValid=1
|
| 838 |
return
|
| 839 |
|
| 840 |
def configOpt_(self):
|
| 841 |
edg_ui_cfg_opt = ' '
|
| 842 |
if self.edg_config:
|
| 843 |
edg_ui_cfg_opt = ' -c ' + self.edg_config + ' '
|
| 844 |
if self.edg_config_vo:
|
| 845 |
edg_ui_cfg_opt += ' --config-vo ' + self.edg_config_vo + ' '
|
| 846 |
return edg_ui_cfg_opt
|
