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Comparing COMP/CRAB/python/cms_cmssw.py (file contents):
Revision 1.2 by slacapra, Wed Apr 26 15:31:06 2006 UTC vs.
Revision 1.128 by fanzago, Thu Oct 11 16:23:44 2007 UTC

# Line 2 | Line 2 | from JobType import JobType
2   from crab_logger import Logger
3   from crab_exceptions import *
4   from crab_util import *
5 + from BlackWhiteListParser import BlackWhiteListParser
6   import common
6
7 import DataDiscovery
8 import DataLocation
7   import Scram
8  
9 < import os, string, re
9 > import os, string, glob
10  
11   class Cmssw(JobType):
12 <    def __init__(self, cfg_params):
12 >    def __init__(self, cfg_params, ncjobs):
13          JobType.__init__(self, 'CMSSW')
14          common.logger.debug(3,'CMSSW::__init__')
15  
16 <        self.analisys_common_info = {}
16 >        self._params = {}
17 >        self.cfg_params = cfg_params
18 >
19 >        # init BlackWhiteListParser
20 >        self.blackWhiteListParser = BlackWhiteListParser(cfg_params)
21 >
22 >        try:
23 >            self.MaxTarBallSize = float(self.cfg_params['EDG.maxtarballsize'])
24 >        except KeyError:
25 >            self.MaxTarBallSize = 9.5
26 >
27 >        # number of jobs requested to be created, limit obj splitting
28 >        self.ncjobs = ncjobs
29  
30          log = common.logger
31          
32          self.scram = Scram.Scram(cfg_params)
23        scramArea = ''
33          self.additional_inbox_files = []
34          self.scriptExe = ''
35          self.executable = ''
36 +        self.executable_arch = self.scram.getArch()
37          self.tgz_name = 'default.tgz'
38 +        self.additional_tgz_name = 'additional.tgz'
39 +        self.scriptName = 'CMSSW.sh'
40 +        self.pset = ''      #scrip use case Da  
41 +        self.datasetPath = '' #scrip use case Da
42 +
43 +        # set FJR file name
44 +        self.fjrFileName = 'crab_fjr.xml'
45  
46          self.version = self.scram.getSWVersion()
47 <        common.analisys_common_info['sw_version'] = self.version
47 >        
48 >        #
49 >        # Try to block creation in case of arch/version mismatch
50 >        #
51 >
52 >        a = string.split(self.version, "_")
53 >
54 >        if int(a[1]) == 1 and (int(a[2]) < 5 and self.executable_arch.find('slc4') == 0):
55 >            msg = "Error: CMS does not support %s with %s architecture"%(self.version, self.executable_arch)
56 >            raise CrabException(msg)
57 >        if int(a[1]) == 1 and (int(a[2]) >= 5 and self.executable_arch.find('slc3') == 0):
58 >            msg = "Error: CMS does not support %s with %s architecture"%(self.version, self.executable_arch)
59 >            raise CrabException(msg)
60 >        
61 >        common.taskDB.setDict('codeVersion',self.version)
62 >        self.setParam_('application', self.version)
63  
64          ### collect Data cards
65 +
66 +        ## get DBS mode
67          try:
68 <            self.owner = cfg_params['CMSSW.owner']
35 <            log.debug(6, "CMSSW::CMSSW(): owner = "+self.owner)
36 <            self.dataset = cfg_params['CMSSW.dataset']
37 <            log.debug(6, "CMSSW::CMSSW(): dataset = "+self.dataset)
68 >            self.use_dbs_1 = int(self.cfg_params['CMSSW.use_dbs_1'])
69          except KeyError:
70 <            msg = "Error: owner and/or dataset not defined "
70 >            self.use_dbs_1 = 0
71 >            
72 >        try:
73 >            tmp =  cfg_params['CMSSW.datasetpath']
74 >            log.debug(6, "CMSSW::CMSSW(): datasetPath = "+tmp)
75 >            if string.lower(tmp)=='none':
76 >                self.datasetPath = None
77 >                self.selectNoInput = 1
78 >            else:
79 >                self.datasetPath = tmp
80 >                self.selectNoInput = 0
81 >        except KeyError:
82 >            msg = "Error: datasetpath not defined "  
83              raise CrabException(msg)
84  
85 +        # ML monitoring
86 +        # split dataset path style: /PreProdR3Minbias/SIM/GEN-SIM
87 +        if not self.datasetPath:
88 +            self.setParam_('dataset', 'None')
89 +            self.setParam_('owner', 'None')
90 +        else:
91 +            try:
92 +                datasetpath_split = self.datasetPath.split("/")
93 +                # standard style
94 +                self.setParam_('datasetFull', self.datasetPath)
95 +                if self.use_dbs_1 == 1 :
96 +                    self.setParam_('dataset', datasetpath_split[1])
97 +                    self.setParam_('owner', datasetpath_split[-1])
98 +                else:
99 +                    self.setParam_('dataset', datasetpath_split[1])
100 +                    self.setParam_('owner', datasetpath_split[2])
101 +            except:
102 +                self.setParam_('dataset', self.datasetPath)
103 +                self.setParam_('owner', self.datasetPath)
104 +                
105 +        self.setTaskid_()
106 +        self.setParam_('taskId', self.cfg_params['taskId'])
107 +
108          self.dataTiers = []
43        try:
44            tmpDataTiers = string.split(cfg_params['CMSSW.data_tier'],',')
45            for tmp in tmpDataTiers:
46                tmp=string.strip(tmp)
47                self.dataTiers.append(tmp)
48                pass
49            pass
50        except KeyError:
51            pass
52        log.debug(6, "Cmssw::Cmssw(): dataTiers = "+str(self.dataTiers))
109  
110          ## now the application
111          try:
112              self.executable = cfg_params['CMSSW.executable']
113 +            self.setParam_('exe', self.executable)
114              log.debug(6, "CMSSW::CMSSW(): executable = "+self.executable)
115              msg = "Default executable cmsRun overridden. Switch to " + self.executable
116              log.debug(3,msg)
117          except KeyError:
118              self.executable = 'cmsRun'
119 +            self.setParam_('exe', self.executable)
120              msg = "User executable not defined. Use cmsRun"
121              log.debug(3,msg)
122              pass
# Line 66 | Line 124 | class Cmssw(JobType):
124          try:
125              self.pset = cfg_params['CMSSW.pset']
126              log.debug(6, "Cmssw::Cmssw(): PSet file = "+self.pset)
127 <            if (not os.path.exists(self.pset)):
128 <                raise CrabException("User defined PSet file "+self.pset+" does not exist")
127 >            if self.pset.lower() != 'none' :
128 >                if (not os.path.exists(self.pset)):
129 >                    raise CrabException("User defined PSet file "+self.pset+" does not exist")
130 >            else:
131 >                self.pset = None
132          except KeyError:
133              raise CrabException("PSet file missing. Cannot run cmsRun ")
134  
135          # output files
136 +        ## stuff which must be returned always via sandbox
137 +        self.output_file_sandbox = []
138 +
139 +        # add fjr report by default via sandbox
140 +        self.output_file_sandbox.append(self.fjrFileName)
141 +
142 +        # other output files to be returned via sandbox or copied to SE
143          try:
144              self.output_file = []
77
145              tmp = cfg_params['CMSSW.output_file']
146              if tmp != '':
147                  tmpOutFiles = string.split(cfg_params['CMSSW.output_file'],',')
# Line 83 | Line 150 | class Cmssw(JobType):
150                      tmp=string.strip(tmp)
151                      self.output_file.append(tmp)
152                      pass
86
153              else:
154 <                log.message("No output file defined: only stdout/err will be available")
154 >                log.message("No output file defined: only stdout/err and the CRAB Framework Job Report will be available\n")
155                  pass
156              pass
157          except KeyError:
158 <            log.message("No output file defined: only stdout/err will be available")
158 >            log.message("No output file defined: only stdout/err and the CRAB Framework Job Report will be available\n")
159              pass
160  
161          # script_exe file as additional file in inputSandbox
162          try:
163 <           self.scriptExe = cfg_params['CMSSW.script_exe']
164 <           self.additional_inbox_files.append(self.scriptExe)
163 >            self.scriptExe = cfg_params['USER.script_exe']
164 >            if self.scriptExe != '':
165 >               if not os.path.isfile(self.scriptExe):
166 >                  msg ="ERROR. file "+self.scriptExe+" not found"
167 >                  raise CrabException(msg)
168 >               self.additional_inbox_files.append(string.strip(self.scriptExe))
169          except KeyError:
170 <           pass
171 <        if self.scriptExe != '':
172 <           if os.path.isfile(self.scriptExe):
173 <              pass
174 <           else:
175 <              log.message("WARNING. file "+self.scriptExe+" not found")
176 <              sys.exit()
107 <                  
170 >            self.scriptExe = ''
171 >
172 >        #CarlosDaniele
173 >        if self.datasetPath == None and self.pset == None and self.scriptExe == '' :
174 >           msg ="Error. script_exe  not defined"
175 >           raise CrabException(msg)
176 >
177          ## additional input files
178          try:
179 <            tmpAddFiles = string.split(cfg_params['CMSSW.additional_input_files'],',')
179 >            tmpAddFiles = string.split(cfg_params['USER.additional_input_files'],',')
180              for tmp in tmpAddFiles:
181 <                tmp=string.strip(tmp)
182 <                self.additional_inbox_files.append(tmp)
181 >                tmp = string.strip(tmp)
182 >                dirname = ''
183 >                if not tmp[0]=="/": dirname = "."
184 >                files = []
185 >                if string.find(tmp,"*")>-1:
186 >                    files = glob.glob(os.path.join(dirname, tmp))
187 >                    if len(files)==0:
188 >                        raise CrabException("No additional input file found with this pattern: "+tmp)
189 >                else:
190 >                    files.append(tmp)
191 >                for file in files:
192 >                    if not os.path.exists(file):
193 >                        raise CrabException("Additional input file not found: "+file)
194 >                    pass
195 >                    # fname = string.split(file, '/')[-1]
196 >                    # storedFile = common.work_space.pathForTgz()+'share/'+fname
197 >                    # shutil.copyfile(file, storedFile)
198 >                    self.additional_inbox_files.append(string.strip(file))
199                  pass
200              pass
201 +            common.logger.debug(5,"Additional input files: "+str(self.additional_inbox_files))
202 +        except KeyError:
203 +            pass
204 +
205 +        # files per job
206 +        try:
207 +            if (cfg_params['CMSSW.files_per_jobs']):
208 +                raise CrabException("files_per_jobs no longer supported.  Quitting.")
209          except KeyError:
210              pass
211  
212 +        ## Events per job
213 +        try:
214 +            self.eventsPerJob =int( cfg_params['CMSSW.events_per_job'])
215 +            self.selectEventsPerJob = 1
216 +        except KeyError:
217 +            self.eventsPerJob = -1
218 +            self.selectEventsPerJob = 0
219 +    
220 +        ## number of jobs
221 +        try:
222 +            self.theNumberOfJobs =int( cfg_params['CMSSW.number_of_jobs'])
223 +            self.selectNumberOfJobs = 1
224 +        except KeyError:
225 +            self.theNumberOfJobs = 0
226 +            self.selectNumberOfJobs = 0
227 +
228          try:
229              self.total_number_of_events = int(cfg_params['CMSSW.total_number_of_events'])
230 +            self.selectTotalNumberEvents = 1
231          except KeyError:
232 <            msg = 'Must define total_number_of_events and job_number_of_events'
233 <            raise CrabException(msg)
234 <            
235 < #Marco: FirstEvent is nolonger used inside PSet
236 < #        try:
237 < #            self.first = int(cfg_params['CMSSW.first_event'])
238 < #        except KeyError:
239 < #            self.first = 0
240 < #            pass
241 < #        log.debug(6, "Orca::Orca(): total number of events = "+`self.total_number_of_events`)
242 <        #log.debug(6, "Orca::Orca(): events per job = "+`self.job_number_of_events`)
243 < #        log.debug(6, "Orca::Orca(): first event = "+`self.first`)
244 <        
245 <        CEBlackList = []
246 <        try:
137 <            tmpBad = string.split(cfg_params['EDG.ce_black_list'],',')
138 <            for tmp in tmpBad:
139 <                tmp=string.strip(tmp)
140 <                CEBlackList.append(tmp)
232 >            self.total_number_of_events = 0
233 >            self.selectTotalNumberEvents = 0
234 >
235 >        if self.pset != None: #CarlosDaniele
236 >             if ( (self.selectTotalNumberEvents + self.selectEventsPerJob + self.selectNumberOfJobs) != 2 ):
237 >                 msg = 'Must define exactly two of total_number_of_events, events_per_job, or number_of_jobs.'
238 >                 raise CrabException(msg)
239 >        else:
240 >             if (self.selectNumberOfJobs == 0):
241 >                 msg = 'Must specify  number_of_jobs.'
242 >                 raise CrabException(msg)
243 >
244 >        ## source seed for pythia
245 >        try:
246 >            self.sourceSeed = int(cfg_params['CMSSW.pythia_seed'])
247          except KeyError:
248 <            pass
248 >            self.sourceSeed = None
249 >            common.logger.debug(5,"No seed given")
250  
251 <        self.reCEBlackList=[]
252 <        for bad in CEBlackList:
146 <            self.reCEBlackList.append(re.compile( bad ))
147 <
148 <        common.logger.debug(5,'CEBlackList: '+str(CEBlackList))
149 <
150 <        CEWhiteList = []
151 <        try:
152 <            tmpGood = string.split(cfg_params['EDG.ce_white_list'],',')
153 <            #tmpGood = ['cern']
154 <            for tmp in tmpGood:
155 <                tmp=string.strip(tmp)
156 <                #if (tmp == 'cnaf'): tmp = 'webserver' ########## warning: temp. patch
157 <                CEWhiteList.append(tmp)
251 >        try:
252 >            self.sourceSeedVtx = int(cfg_params['CMSSW.vtx_seed'])
253          except KeyError:
254 <            pass
254 >            self.sourceSeedVtx = None
255 >            common.logger.debug(5,"No vertex seed given")
256  
257 <        #print 'CEWhiteList: ',CEWhiteList
258 <        self.reCEWhiteList=[]
259 <        for Good in CEWhiteList:
260 <            self.reCEWhiteList.append(re.compile( Good ))
257 >        try:
258 >            self.sourceSeedG4 = int(cfg_params['CMSSW.g4_seed'])
259 >        except KeyError:
260 >            self.sourceSeedG4 = None
261 >            common.logger.debug(5,"No g4 sim hits seed given")
262  
263 <        common.logger.debug(5,'CEWhiteList: '+str(CEWhiteList))
263 >        try:
264 >            self.sourceSeedMix = int(cfg_params['CMSSW.mix_seed'])
265 >        except KeyError:
266 >            self.sourceSeedMix = None
267 >            common.logger.debug(5,"No mix seed given")
268 >
269 >        try:
270 >            self.firstRun = int(cfg_params['CMSSW.first_run'])
271 >        except KeyError:
272 >            self.firstRun = None
273 >            common.logger.debug(5,"No first run given")
274 >        if self.pset != None: #CarlosDaniele
275 >            ver = string.split(self.version,"_")
276 >            if (int(ver[1])>=1 and int(ver[2])>=5):
277 >                import PsetManipulator150 as pp
278 >            else:
279 >                import PsetManipulator as pp
280 >            PsetEdit = pp.PsetManipulator(self.pset) #Daniele Pset
281  
282          #DBSDLS-start
283          ## Initialize the variables that are extracted from DBS/DLS and needed in other places of the code
284          self.maxEvents=0  # max events available   ( --> check the requested nb. of evts in Creator.py)
285          self.DBSPaths={}  # all dbs paths requested ( --> input to the site local discovery script)
286 +        self.jobDestination=[]  # Site destination(s) for each job (list of lists)
287          ## Perform the data location and discovery (based on DBS/DLS)
288 <        self.DataDiscoveryAndLocation(cfg_params)
288 >        ## SL: Don't if NONE is specified as input (pythia use case)
289 >        blockSites = {}
290 >        if self.datasetPath:
291 >            blockSites = self.DataDiscoveryAndLocation(cfg_params)
292          #DBSDLS-end          
293  
294          self.tgzNameWithPath = self.getTarBall(self.executable)
295 +    
296 +        ## Select Splitting
297 +        if self.selectNoInput:
298 +            if self.pset == None: #CarlosDaniele
299 +                self.jobSplittingForScript()
300 +            else:
301 +                self.jobSplittingNoInput()
302 +        else:
303 +            self.jobSplittingByBlocks(blockSites)
304 +
305 +        # modify Pset
306 +        if self.pset != None: #CarlosDaniele
307 +            try:
308 +                if (self.datasetPath): # standard job
309 +                    # allow to processa a fraction of events in a file
310 +                    PsetEdit.inputModule("INPUT")
311 +                    PsetEdit.maxEvent("INPUTMAXEVENTS")
312 +                    PsetEdit.skipEvent("INPUTSKIPEVENTS")
313 +                else:  # pythia like job
314 +                    PsetEdit.maxEvent(self.eventsPerJob)
315 +                    if (self.firstRun):
316 +                        PsetEdit.pythiaFirstRun("INPUTFIRSTRUN")  #First Run
317 +                    if (self.sourceSeed) :
318 +                        PsetEdit.pythiaSeed("INPUT")
319 +                        if (self.sourceSeedVtx) :
320 +                            PsetEdit.vtxSeed("INPUTVTX")
321 +                        if (self.sourceSeedG4) :
322 +                            PsetEdit.g4Seed("INPUTG4")
323 +                        if (self.sourceSeedMix) :
324 +                            PsetEdit.mixSeed("INPUTMIX")
325 +                # add FrameworkJobReport to parameter-set
326 +                PsetEdit.addCrabFJR(self.fjrFileName)
327 +                PsetEdit.psetWriter(self.configFilename())
328 +            except:
329 +                msg='Error while manipuliating ParameterSet: exiting...'
330 +                raise CrabException(msg)
331  
332      def DataDiscoveryAndLocation(self, cfg_params):
333  
334 <        fun = "CMSSW::DataDiscoveryAndLocation()"
334 >        import DataDiscovery
335 >        import DataDiscovery_DBS2
336 >        import DataLocation
337 >        common.logger.debug(10,"CMSSW::DataDiscoveryAndLocation()")
338 >
339 >        datasetPath=self.datasetPath
340  
341          ## Contact the DBS
342 +        common.logger.message("Contacting Data Discovery Services ...")
343          try:
344 <            self.pubdata=DataDiscovery.DataDiscovery(self.owner,
345 <                                                     self.dataset,
346 <                                                     self.dataTiers,
347 <                                                     cfg_params)
344 >
345 >            if self.use_dbs_1 == 1 :
346 >                self.pubdata=DataDiscovery.DataDiscovery(datasetPath, cfg_params)
347 >            else :
348 >                self.pubdata=DataDiscovery_DBS2.DataDiscovery_DBS2(datasetPath, cfg_params)
349              self.pubdata.fetchDBSInfo()
350  
351          except DataDiscovery.NotExistingDatasetError, ex :
352              msg = 'ERROR ***: failed Data Discovery in DBS : %s'%ex.getErrorMessage()
353              raise CrabException(msg)
193
354          except DataDiscovery.NoDataTierinProvenanceError, ex :
355              msg = 'ERROR ***: failed Data Discovery in DBS : %s'%ex.getErrorMessage()
356              raise CrabException(msg)
357          except DataDiscovery.DataDiscoveryError, ex:
358 <            msg = 'ERROR ***: failed Data Discovery in DBS  %s'%ex.getErrorMessage()
358 >            msg = 'ERROR ***: failed Data Discovery in DBS :  %s'%ex.getErrorMessage()
359 >            raise CrabException(msg)
360 >        except DataDiscovery_DBS2.NotExistingDatasetError_DBS2, ex :
361 >            msg = 'ERROR ***: failed Data Discovery in DBS : %s'%ex.getErrorMessage()
362 >            raise CrabException(msg)
363 >        except DataDiscovery_DBS2.NoDataTierinProvenanceError_DBS2, ex :
364 >            msg = 'ERROR ***: failed Data Discovery in DBS : %s'%ex.getErrorMessage()
365 >            raise CrabException(msg)
366 >        except DataDiscovery_DBS2.DataDiscoveryError_DBS2, ex:
367 >            msg = 'ERROR ***: failed Data Discovery in DBS :  %s'%ex.getErrorMessage()
368              raise CrabException(msg)
369  
370 <        ## get list of all required data in the form of dbs paths  (dbs path = /dataset/datatier/owner)
371 <        self.DBSPaths=self.pubdata.getDBSPaths()
372 <        common.logger.message("Required data are : ")
204 <        for path in self.DBSPaths:
205 <            common.logger.message(" --> "+path )
370 >        self.filesbyblock=self.pubdata.getFiles()
371 >        self.eventsbyblock=self.pubdata.getEventsPerBlock()
372 >        self.eventsbyfile=self.pubdata.getEventsPerFile()
373  
374          ## get max number of events
208        common.logger.debug(10,"number of events for primary fileblocks %i"%self.pubdata.getMaxEvents())
375          self.maxEvents=self.pubdata.getMaxEvents() ##  self.maxEvents used in Creator.py
210        common.logger.message("\nThe number of available events is %s"%self.maxEvents)
211
212        ## get fileblocks corresponding to the required data
213        fb=self.pubdata.getFileBlocks()
214        common.logger.debug(5,"fileblocks are %s"%fb)
376  
377          ## Contact the DLS and build a list of sites hosting the fileblocks
378          try:
379 <            dataloc=DataLocation.DataLocation(self.pubdata.getFileBlocks(),cfg_params)
379 >            dataloc=DataLocation.DataLocation(self.filesbyblock.keys(),cfg_params)
380              dataloc.fetchDLSInfo()
381          except DataLocation.DataLocationError , ex:
382              msg = 'ERROR ***: failed Data Location in DLS \n %s '%ex.getErrorMessage()
383              raise CrabException(msg)
384          
385 <        allsites=dataloc.getSites()
386 <        common.logger.debug(5,"sites are %s"%allsites)
387 <        sites=self.checkBlackList(allsites)
388 <        common.logger.debug(5,"sites are (after black list) %s"%sites)
389 <        sites=self.checkWhiteList(sites)
390 <        common.logger.debug(5,"sites are (after white list) %s"%sites)
391 <
392 <        if len(sites)==0:
393 <            msg = 'No sites hosting all the needed data! Exiting... '
394 <            raise CrabException(msg)
395 <        common.logger.message("List of Sites hosting the data : "+str(sites))
396 <        common.logger.debug(6, "List of Sites: "+str(sites))
397 <        common.analisys_common_info['sites']=sites    ## used in SchedulerEdg.py in createSchScript
398 <        return
385 >
386 >        sites = dataloc.getSites()
387 >        allSites = []
388 >        listSites = sites.values()
389 >        for listSite in listSites:
390 >            for oneSite in listSite:
391 >                allSites.append(oneSite)
392 >        allSites = self.uniquelist(allSites)
393 >
394 >        # screen output
395 >        common.logger.message("Requested dataset: " + datasetPath + " has " + str(self.maxEvents) + " events in " + str(len(self.filesbyblock.keys())) + " blocks.\n")
396 >
397 >        return sites
398 >    
399 >    def jobSplittingByBlocks(self, blockSites):
400 >        """
401 >        Perform job splitting. Jobs run over an integer number of files
402 >        and no more than one block.
403 >        ARGUMENT: blockSites: dictionary with blocks as keys and list of host sites as values
404 >        REQUIRES: self.selectTotalNumberEvents, self.selectEventsPerJob, self.selectNumberofJobs,
405 >                  self.total_number_of_events, self.eventsPerJob, self.theNumberOfJobs,
406 >                  self.maxEvents, self.filesbyblock
407 >        SETS: self.jobDestination - Site destination(s) for each job (a list of lists)
408 >              self.total_number_of_jobs - Total # of jobs
409 >              self.list_of_args - File(s) job will run on (a list of lists)
410 >        """
411 >
412 >        # ---- Handle the possible job splitting configurations ---- #
413 >        if (self.selectTotalNumberEvents):
414 >            totalEventsRequested = self.total_number_of_events
415 >        if (self.selectEventsPerJob):
416 >            eventsPerJobRequested = self.eventsPerJob
417 >            if (self.selectNumberOfJobs):
418 >                totalEventsRequested = self.theNumberOfJobs * self.eventsPerJob
419 >
420 >        # If user requested all the events in the dataset
421 >        if (totalEventsRequested == -1):
422 >            eventsRemaining=self.maxEvents
423 >        # If user requested more events than are in the dataset
424 >        elif (totalEventsRequested > self.maxEvents):
425 >            eventsRemaining = self.maxEvents
426 >            common.logger.message("Requested "+str(self.total_number_of_events)+ " events, but only "+str(self.maxEvents)+" events are available.")
427 >        # If user requested less events than are in the dataset
428 >        else:
429 >            eventsRemaining = totalEventsRequested
430 >
431 >        # If user requested more events per job than are in the dataset
432 >        if (self.selectEventsPerJob and eventsPerJobRequested > self.maxEvents):
433 >            eventsPerJobRequested = self.maxEvents
434 >
435 >        # For user info at end
436 >        totalEventCount = 0
437 >
438 >        if (self.selectTotalNumberEvents and self.selectNumberOfJobs):
439 >            eventsPerJobRequested = int(eventsRemaining/self.theNumberOfJobs)
440 >
441 >        if (self.selectNumberOfJobs):
442 >            common.logger.message("May not create the exact number_of_jobs requested.")
443 >
444 >        if ( self.ncjobs == 'all' ) :
445 >            totalNumberOfJobs = 999999999
446 >        else :
447 >            totalNumberOfJobs = self.ncjobs
448 >            
449 >
450 >        blocks = blockSites.keys()
451 >        blockCount = 0
452 >        # Backup variable in case self.maxEvents counted events in a non-included block
453 >        numBlocksInDataset = len(blocks)
454 >
455 >        jobCount = 0
456 >        list_of_lists = []
457 >
458 >        # list tracking which jobs are in which jobs belong to which block
459 >        jobsOfBlock = {}
460 >
461 >        # ---- Iterate over the blocks in the dataset until ---- #
462 >        # ---- we've met the requested total # of events    ---- #
463 >        while ( (eventsRemaining > 0) and (blockCount < numBlocksInDataset) and (jobCount < totalNumberOfJobs)):
464 >            block = blocks[blockCount]
465 >            blockCount += 1
466 >            if block not in jobsOfBlock.keys() :
467 >                jobsOfBlock[block] = []
468 >            
469 >            if self.eventsbyblock.has_key(block) :
470 >                numEventsInBlock = self.eventsbyblock[block]
471 >                common.logger.debug(5,'Events in Block File '+str(numEventsInBlock))
472 >            
473 >                files = self.filesbyblock[block]
474 >                numFilesInBlock = len(files)
475 >                if (numFilesInBlock <= 0):
476 >                    continue
477 >                fileCount = 0
478 >
479 >                # ---- New block => New job ---- #
480 >                parString = "\\{"
481 >                # counter for number of events in files currently worked on
482 >                filesEventCount = 0
483 >                # flag if next while loop should touch new file
484 >                newFile = 1
485 >                # job event counter
486 >                jobSkipEventCount = 0
487 >            
488 >                # ---- Iterate over the files in the block until we've met the requested ---- #
489 >                # ---- total # of events or we've gone over all the files in this block  ---- #
490 >                while ( (eventsRemaining > 0) and (fileCount < numFilesInBlock) and (jobCount < totalNumberOfJobs) ):
491 >                    file = files[fileCount]
492 >                    if newFile :
493 >                        try:
494 >                            numEventsInFile = self.eventsbyfile[file]
495 >                            common.logger.debug(6, "File "+str(file)+" has "+str(numEventsInFile)+" events")
496 >                            # increase filesEventCount
497 >                            filesEventCount += numEventsInFile
498 >                            # Add file to current job
499 >                            parString += '\\\"' + file + '\\\"\,'
500 >                            newFile = 0
501 >                        except KeyError:
502 >                            common.logger.message("File "+str(file)+" has unknown number of events: skipping")
503 >                        
504 >
505 >                    # if less events in file remain than eventsPerJobRequested
506 >                    if ( filesEventCount - jobSkipEventCount < eventsPerJobRequested ) :
507 >                        # if last file in block
508 >                        if ( fileCount == numFilesInBlock-1 ) :
509 >                            # end job using last file, use remaining events in block
510 >                            # close job and touch new file
511 >                            fullString = parString[:-2]
512 >                            fullString += '\\}'
513 >                            list_of_lists.append([fullString,str(-1),str(jobSkipEventCount)])
514 >                            common.logger.debug(3,"Job "+str(jobCount+1)+" can run over "+str(filesEventCount - jobSkipEventCount)+" events (last file in block).")
515 >                            self.jobDestination.append(blockSites[block])
516 >                            common.logger.debug(5,"Job "+str(jobCount+1)+" Destination: "+str(self.jobDestination[jobCount]))
517 >                            # fill jobs of block dictionary
518 >                            jobsOfBlock[block].append(jobCount+1)
519 >                            # reset counter
520 >                            jobCount = jobCount + 1
521 >                            totalEventCount = totalEventCount + filesEventCount - jobSkipEventCount
522 >                            eventsRemaining = eventsRemaining - filesEventCount + jobSkipEventCount
523 >                            jobSkipEventCount = 0
524 >                            # reset file
525 >                            parString = "\\{"
526 >                            filesEventCount = 0
527 >                            newFile = 1
528 >                            fileCount += 1
529 >                        else :
530 >                            # go to next file
531 >                            newFile = 1
532 >                            fileCount += 1
533 >                    # if events in file equal to eventsPerJobRequested
534 >                    elif ( filesEventCount - jobSkipEventCount == eventsPerJobRequested ) :
535 >                        # close job and touch new file
536 >                        fullString = parString[:-2]
537 >                        fullString += '\\}'
538 >                        list_of_lists.append([fullString,str(eventsPerJobRequested),str(jobSkipEventCount)])
539 >                        common.logger.debug(3,"Job "+str(jobCount+1)+" can run over "+str(eventsPerJobRequested)+" events.")
540 >                        self.jobDestination.append(blockSites[block])
541 >                        common.logger.debug(5,"Job "+str(jobCount+1)+" Destination: "+str(self.jobDestination[jobCount]))
542 >                        jobsOfBlock[block].append(jobCount+1)
543 >                        # reset counter
544 >                        jobCount = jobCount + 1
545 >                        totalEventCount = totalEventCount + eventsPerJobRequested
546 >                        eventsRemaining = eventsRemaining - eventsPerJobRequested
547 >                        jobSkipEventCount = 0
548 >                        # reset file
549 >                        parString = "\\{"
550 >                        filesEventCount = 0
551 >                        newFile = 1
552 >                        fileCount += 1
553 >                        
554 >                    # if more events in file remain than eventsPerJobRequested
555 >                    else :
556 >                        # close job but don't touch new file
557 >                        fullString = parString[:-2]
558 >                        fullString += '\\}'
559 >                        list_of_lists.append([fullString,str(eventsPerJobRequested),str(jobSkipEventCount)])
560 >                        common.logger.debug(3,"Job "+str(jobCount+1)+" can run over "+str(eventsPerJobRequested)+" events.")
561 >                        self.jobDestination.append(blockSites[block])
562 >                        common.logger.debug(5,"Job "+str(jobCount+1)+" Destination: "+str(self.jobDestination[jobCount]))
563 >                        jobsOfBlock[block].append(jobCount+1)
564 >                        # increase counter
565 >                        jobCount = jobCount + 1
566 >                        totalEventCount = totalEventCount + eventsPerJobRequested
567 >                        eventsRemaining = eventsRemaining - eventsPerJobRequested
568 >                        # calculate skip events for last file
569 >                        # use filesEventCount (contains several files), jobSkipEventCount and eventsPerJobRequest
570 >                        jobSkipEventCount = eventsPerJobRequested - (filesEventCount - jobSkipEventCount - self.eventsbyfile[file])
571 >                        # remove all but the last file
572 >                        filesEventCount = self.eventsbyfile[file]
573 >                        parString = "\\{"
574 >                        parString += '\\\"' + file + '\\\"\,'
575 >                    pass # END if
576 >                pass # END while (iterate over files in the block)
577 >        pass # END while (iterate over blocks in the dataset)
578 >        self.ncjobs = self.total_number_of_jobs = jobCount
579 >        if (eventsRemaining > 0 and jobCount < totalNumberOfJobs ):
580 >            common.logger.message("Could not run on all requested events because some blocks not hosted at allowed sites.")
581 >        common.logger.message(str(jobCount)+" job(s) can run on "+str(totalEventCount)+" events.\n")
582          
583 <    def checkBlackList(self, allSites):
584 <        if len(self.reCEBlackList)==0: return allSites
585 <        sites = []
586 <        for site in allSites:
587 <            common.logger.debug(10,'Site '+site)
588 <            good=1
589 <            for re in self.reCEBlackList:
590 <                if re.search(site):
591 <                    common.logger.message('CE in black list, skipping site '+site)
592 <                    good=0
583 >        # screen output
584 >        screenOutput = "List of jobs and available destination sites:\n\n"
585 >
586 >        # keep trace of block with no sites to print a warning at the end
587 >        noSiteBlock = []
588 >        bloskNoSite = []
589 >
590 >        blockCounter = 0
591 >        for block in blocks:
592 >            if block in jobsOfBlock.keys() :
593 >                blockCounter += 1
594 >                screenOutput += "Block %5i: jobs %20s: sites: %s\n" % (blockCounter,spanRanges(jobsOfBlock[block]),','.join(self.blackWhiteListParser.checkWhiteList(self.blackWhiteListParser.checkBlackList(blockSites[block],block),block)))
595 >                if len(self.blackWhiteListParser.checkWhiteList(self.blackWhiteListParser.checkBlackList(blockSites[block],block),block)) == 0:
596 >                    noSiteBlock.append( spanRanges(jobsOfBlock[block]) )
597 >                    bloskNoSite.append( blockCounter )
598 >        
599 >        common.logger.message(screenOutput)
600 >        if len(noSiteBlock) > 0 and len(bloskNoSite) > 0:
601 >            msg = 'WARNING: No sites are hosting any part of data for block:\n                '
602 >            virgola = ""
603 >            if len(bloskNoSite) > 1:
604 >                virgola = ","
605 >            for block in bloskNoSite:
606 >                msg += ' ' + str(block) + virgola
607 >            msg += '\n               Related jobs:\n                 '
608 >            virgola = ""
609 >            if len(noSiteBlock) > 1:
610 >                virgola = ","
611 >            for range_jobs in noSiteBlock:
612 >                msg += str(range_jobs) + virgola
613 >            msg += '\n               will not be submitted and this block of data can not be analyzed!\n'
614 >            common.logger.message(msg)
615 >
616 >        self.list_of_args = list_of_lists
617 >        return
618 >
619 >    def jobSplittingNoInput(self):
620 >        """
621 >        Perform job splitting based on number of event per job
622 >        """
623 >        common.logger.debug(5,'Splitting per events')
624 >        common.logger.message('Required '+str(self.eventsPerJob)+' events per job ')
625 >        common.logger.message('Required '+str(self.theNumberOfJobs)+' jobs in total ')
626 >        common.logger.message('Required '+str(self.total_number_of_events)+' events in total ')
627 >
628 >        if (self.total_number_of_events < 0):
629 >            msg='Cannot split jobs per Events with "-1" as total number of events'
630 >            raise CrabException(msg)
631 >
632 >        if (self.selectEventsPerJob):
633 >            if (self.selectTotalNumberEvents):
634 >                self.total_number_of_jobs = int(self.total_number_of_events/self.eventsPerJob)
635 >            elif(self.selectNumberOfJobs) :  
636 >                self.total_number_of_jobs =self.theNumberOfJobs
637 >                self.total_number_of_events =int(self.theNumberOfJobs*self.eventsPerJob)
638 >
639 >        elif (self.selectNumberOfJobs) :
640 >            self.total_number_of_jobs = self.theNumberOfJobs
641 >            self.eventsPerJob = int(self.total_number_of_events/self.total_number_of_jobs)
642 >
643 >        common.logger.debug(5,'N jobs  '+str(self.total_number_of_jobs))
644 >
645 >        # is there any remainder?
646 >        check = int(self.total_number_of_events) - (int(self.total_number_of_jobs)*self.eventsPerJob)
647 >
648 >        common.logger.debug(5,'Check  '+str(check))
649 >
650 >        common.logger.message(str(self.total_number_of_jobs)+' jobs can be created, each for '+str(self.eventsPerJob)+' for a total of '+str(self.total_number_of_jobs*self.eventsPerJob)+' events')
651 >        if check > 0:
652 >            common.logger.message('Warning: asked '+str(self.total_number_of_events)+' but can do only '+str(int(self.total_number_of_jobs)*self.eventsPerJob))
653 >
654 >        # argument is seed number.$i
655 >        self.list_of_args = []
656 >        for i in range(self.total_number_of_jobs):
657 >            ## Since there is no input, any site is good
658 >           # self.jobDestination.append(["Any"])
659 >            self.jobDestination.append([""]) #must be empty to write correctly the xml
660 >            args=[]
661 >            if (self.firstRun):
662 >                    ## pythia first run
663 >                #self.list_of_args.append([(str(self.firstRun)+str(i))])
664 >                args.append(str(self.firstRun)+str(i))
665 >            else:
666 >                ## no first run
667 >                #self.list_of_args.append([str(i)])
668 >                args.append(str(i))
669 >            if (self.sourceSeed):
670 >                args.append(str(self.sourceSeed)+str(i))
671 >                if (self.sourceSeedVtx):
672 >                    ## + vtx random seed
673 >                    args.append(str(self.sourceSeedVtx)+str(i))
674 >                if (self.sourceSeedG4):
675 >                    ## + G4 random seed
676 >                    args.append(str(self.sourceSeedG4)+str(i))
677 >                if (self.sourceSeedMix):    
678 >                    ## + Mix random seed
679 >                    args.append(str(self.sourceSeedMix)+str(i))
680                  pass
681 <            if good: sites.append(site)
682 <        if len(sites) == 0:
683 <            common.logger.debug(3,"No sites found after BlackList")
684 <        return sites
681 >            pass
682 >            self.list_of_args.append(args)
683 >        pass
684 >            
685 >        # print self.list_of_args
686  
687 <    def checkWhiteList(self, allsites):
687 >        return
688  
689 <        if len(self.reCEWhiteList)==0: return pubDBUrls
690 <        sites = []
691 <        for site in allsites:
692 <            #print 'connecting to the URL ',url
693 <            good=0
694 <            for re in self.reCEWhiteList:
695 <                if re.search(site):
696 <                    common.logger.debug(5,'CE in white list, adding site '+site)
697 <                    good=1
698 <                if not good: continue
699 <                sites.append(site)
700 <        if len(sites) == 0:
701 <            common.logger.message("No sites found after WhiteList\n")
702 <        else:
703 <            common.logger.debug(5,"Selected sites via WhiteList are "+str(sites)+"\n")
704 <        return sites
689 >
690 >    def jobSplittingForScript(self):#CarlosDaniele
691 >        """
692 >        Perform job splitting based on number of job
693 >        """
694 >        common.logger.debug(5,'Splitting per job')
695 >        common.logger.message('Required '+str(self.theNumberOfJobs)+' jobs in total ')
696 >
697 >        self.total_number_of_jobs = self.theNumberOfJobs
698 >
699 >        common.logger.debug(5,'N jobs  '+str(self.total_number_of_jobs))
700 >
701 >        common.logger.message(str(self.total_number_of_jobs)+' jobs can be created')
702 >
703 >        # argument is seed number.$i
704 >        self.list_of_args = []
705 >        for i in range(self.total_number_of_jobs):
706 >            ## Since there is no input, any site is good
707 >           # self.jobDestination.append(["Any"])
708 >            self.jobDestination.append([""])
709 >            ## no random seed
710 >            self.list_of_args.append([str(i)])
711 >        return
712 >
713 >    def split(self, jobParams):
714 >
715 >        common.jobDB.load()
716 >        #### Fabio
717 >        njobs = self.total_number_of_jobs
718 >        arglist = self.list_of_args
719 >        # create the empty structure
720 >        for i in range(njobs):
721 >            jobParams.append("")
722 >        
723 >        for job in range(njobs):
724 >            jobParams[job] = arglist[job]
725 >            # print str(arglist[job])
726 >            # print jobParams[job]
727 >            common.jobDB.setArguments(job, jobParams[job])
728 >            common.logger.debug(5,"Job "+str(job)+" Destination: "+str(self.jobDestination[job]))
729 >            common.jobDB.setDestination(job, self.jobDestination[job])
730 >
731 >        common.jobDB.save()
732 >        return
733 >    
734 >    def getJobTypeArguments(self, nj, sched):
735 >        result = ''
736 >        for i in common.jobDB.arguments(nj):
737 >            result=result+str(i)+" "
738 >        return result
739 >  
740 >    def numberOfJobs(self):
741 >        # Fabio
742 >        return self.total_number_of_jobs
743  
744      def getTarBall(self, exe):
745          """
# Line 277 | Line 747 | class Cmssw(JobType):
747          """
748          
749          # if it exist, just return it
750 <        self.tgzNameWithPath = common.work_space.shareDir()+self.tgz_name
750 >        #
751 >        # Marco. Let's start to use relative path for Boss XML files
752 >        #
753 >        self.tgzNameWithPath = common.work_space.pathForTgz()+'share/'+self.tgz_name
754          if os.path.exists(self.tgzNameWithPath):
755              return self.tgzNameWithPath
756  
# Line 291 | Line 764 | class Cmssw(JobType):
764          # First of all declare the user Scram area
765          swArea = self.scram.getSWArea_()
766          #print "swArea = ", swArea
767 <        swVersion = self.scram.getSWVersion()
768 <        #print "swVersion = ", swVersion
767 >        # swVersion = self.scram.getSWVersion()
768 >        # print "swVersion = ", swVersion
769          swReleaseTop = self.scram.getReleaseTop_()
770          #print "swReleaseTop = ", swReleaseTop
771          
# Line 300 | Line 773 | class Cmssw(JobType):
773          if swReleaseTop == '' or swArea == swReleaseTop:
774              return
775  
776 <        filesToBeTarred = []
777 <        ## First find the executable
778 <        if (self.executable != ''):
779 <            exeWithPath = self.scram.findFile_(executable)
780 < #           print exeWithPath
781 <            if ( not exeWithPath ):
782 <                raise CrabException('User executable '+executable+' not found')
783 <
784 <            ## then check if it's private or not
785 <            if exeWithPath.find(swReleaseTop) == -1:
786 <                # the exe is private, so we must ship
787 <                common.logger.debug(5,"Exe "+exeWithPath+" to be tarred")
788 <                path = swArea+'/'
789 <                exe = string.replace(exeWithPath, path,'')
790 <                filesToBeTarred.append(exe)
791 <                pass
792 <            else:
793 <                # the exe is from release, we'll find it on WN
794 <                pass
795 <
796 <        ## Now get the libraries: only those in local working area
797 <        libDir = 'lib'
798 <        lib = swArea+'/' +libDir
799 <        common.logger.debug(5,"lib "+lib+" to be tarred")
800 <        if os.path.exists(lib):
801 <            filesToBeTarred.append(libDir)
802 <
803 <        ## Now check if the Data dir is present
804 <        dataDir = 'src/Data/'
805 <        if os.path.isdir(swArea+'/'+dataDir):
806 <            filesToBeTarred.append(dataDir)
807 <
808 <        ## Create the tar-ball
809 <        if len(filesToBeTarred)>0:
810 <            cwd = os.getcwd()
811 <            os.chdir(swArea)
812 <            tarcmd = 'tar zcvf ' + self.tgzNameWithPath + ' '
813 <            for line in filesToBeTarred:
814 <                tarcmd = tarcmd + line + ' '
815 <            cout = runCommand(tarcmd)
816 <            if not cout:
817 <                raise CrabException('Could not create tar-ball')
818 <            os.chdir(cwd)
819 <        else:
820 <            common.logger.debug(5,"No files to be to be tarred")
776 >        import tarfile
777 >        try: # create tar ball
778 >            tar = tarfile.open(self.tgzNameWithPath, "w:gz")
779 >            ## First find the executable
780 >            if (self.executable != ''):
781 >                exeWithPath = self.scram.findFile_(executable)
782 >                if ( not exeWithPath ):
783 >                    raise CrabException('User executable '+executable+' not found')
784 >    
785 >                ## then check if it's private or not
786 >                if exeWithPath.find(swReleaseTop) == -1:
787 >                    # the exe is private, so we must ship
788 >                    common.logger.debug(5,"Exe "+exeWithPath+" to be tarred")
789 >                    path = swArea+'/'
790 >                    # distinguish case when script is in user project area or given by full path somewhere else
791 >                    if exeWithPath.find(path) >= 0 :
792 >                        exe = string.replace(exeWithPath, path,'')
793 >                        tar.add(path+exe,os.path.basename(executable))
794 >                    else :
795 >                        tar.add(exeWithPath,os.path.basename(executable))
796 >                    pass
797 >                else:
798 >                    # the exe is from release, we'll find it on WN
799 >                    pass
800 >    
801 >            ## Now get the libraries: only those in local working area
802 >            libDir = 'lib'
803 >            lib = swArea+'/' +libDir
804 >            common.logger.debug(5,"lib "+lib+" to be tarred")
805 >            if os.path.exists(lib):
806 >                tar.add(lib,libDir)
807 >    
808 >            ## Now check if module dir is present
809 >            moduleDir = 'module'
810 >            module = swArea + '/' + moduleDir
811 >            if os.path.isdir(module):
812 >                tar.add(module,moduleDir)
813 >
814 >            ## Now check if any data dir(s) is present
815 >            swAreaLen=len(swArea)
816 >            for root, dirs, files in os.walk(swArea):
817 >                if "data" in dirs:
818 >                    common.logger.debug(5,"data "+root+"/data"+" to be tarred")
819 >                    tar.add(root+"/data",root[swAreaLen:]+"/data")
820 >
821 >            ## Add ProdAgent dir to tar
822 >            paDir = 'ProdAgentApi'
823 >            pa = os.environ['CRABDIR'] + '/' + 'ProdAgentApi'
824 >            if os.path.isdir(pa):
825 >                tar.add(pa,paDir)
826 >
827 >            ### FEDE FOR DBS PUBLICATION
828 >            ## Add PRODCOMMON dir to tar
829 >            prodcommonDir = 'ProdCommon'
830 >            prodcommonPath = os.environ['CRABDIR'] + '/' + 'ProdCommon'
831 >            if os.path.isdir(prodcommonPath):
832 >                tar.add(prodcommonPath,prodcommonDir)
833 >            #############################    
834 >        
835 >            common.logger.debug(5,"Files added to "+self.tgzNameWithPath+" : "+str(tar.getnames()))
836 >            tar.close()
837 >        except :
838 >            raise CrabException('Could not create tar-ball')
839 >
840 >        ## check for tarball size
841 >        tarballinfo = os.stat(self.tgzNameWithPath)
842 >        if ( tarballinfo.st_size > self.MaxTarBallSize*1024*1024 ) :
843 >            raise CrabException('Input sandbox size of ' + str(float(tarballinfo.st_size)/1024.0/1024.0) + ' MB is larger than the allowed ' + str(self.MaxTarBallSize) + ' MB input sandbox limit and not supported by the used GRID submission system. Please make sure that no unnecessary files are in all data directories in your local CMSSW project area as they are automatically packed into the input sandbox.')
844 >
845 >        ## create tar-ball with ML stuff
846 >        self.MLtgzfile =  common.work_space.pathForTgz()+'share/MLfiles.tgz'
847 >        try:
848 >            tar = tarfile.open(self.MLtgzfile, "w:gz")
849 >            path=os.environ['CRABDIR'] + '/python/'
850 >            for file in ['report.py', 'DashboardAPI.py', 'Logger.py', 'ProcInfo.py', 'apmon.py', 'parseCrabFjr.py']:
851 >                tar.add(path+file,file)
852 >            common.logger.debug(5,"Files added to "+self.MLtgzfile+" : "+str(tar.getnames()))
853 >            tar.close()
854 >        except :
855 >            raise CrabException('Could not create ML files tar-ball')
856          
857          return
858          
859 +    def additionalInputFileTgz(self):
860 +        """
861 +        Put all additional files into a tar ball and return its name
862 +        """
863 +        import tarfile
864 +        tarName=  common.work_space.pathForTgz()+'share/'+self.additional_tgz_name
865 +        tar = tarfile.open(tarName, "w:gz")
866 +        for file in self.additional_inbox_files:
867 +            tar.add(file,string.split(file,'/')[-1])
868 +        common.logger.debug(5,"Files added to "+self.additional_tgz_name+" : "+str(tar.getnames()))
869 +        tar.close()
870 +        return tarName
871 +
872      def wsSetupEnvironment(self, nj):
873          """
874          Returns part of a job script which prepares
875          the execution environment for the job 'nj'.
876          """
877          # Prepare JobType-independent part
878 <        txt = self.wsSetupCMSEnvironment_()
878 >        txt = ''
879 >  
880 >        ## OLI_Daniele at this level  middleware already known
881 >
882 >        txt += 'if [ $middleware == LCG ]; then \n'
883 >        txt += '    echo "### First set SCRAM ARCH and BUILD_ARCH to ' + self.executable_arch + ' ###"\n'
884 >        txt += '    export SCRAM_ARCH='+self.executable_arch+'\n'
885 >        txt += '    export BUILD_ARCH='+self.executable_arch+'\n'
886 >        txt += self.wsSetupCMSLCGEnvironment_()
887 >        txt += 'elif [ $middleware == OSG ]; then\n'
888 >        txt += '    WORKING_DIR=`/bin/mktemp  -d $OSG_WN_TMP/cms_XXXXXXXXXXXX`\n'
889 >        txt += '    echo "Created working directory: $WORKING_DIR"\n'
890 >        txt += '    if [ ! -d $WORKING_DIR ] ;then\n'
891 >        txt += '        echo "SET_CMS_ENV 10016 ==> OSG $WORKING_DIR could not be created on WN `hostname`"\n'
892 >        txt += '    echo "JOB_EXIT_STATUS = 10016"\n'
893 >        txt += '    echo "JobExitCode=10016" | tee -a $RUNTIME_AREA/$repo\n'
894 >        txt += '    dumpStatus $RUNTIME_AREA/$repo\n'
895 >        txt += '        rm -f $RUNTIME_AREA/$repo \n'
896 >        txt += '        echo "MonitorJobID=`echo $MonitorJobID`" | tee -a $RUNTIME_AREA/$repo \n'
897 >        txt += '        echo "MonitorID=`echo $MonitorID`" | tee -a $RUNTIME_AREA/$repo\n'
898 >        txt += '        exit 1\n'
899 >        txt += '    fi\n'
900 >        txt += '\n'
901 >        txt += '    echo "Change to working directory: $WORKING_DIR"\n'
902 >        txt += '    cd $WORKING_DIR\n'
903 >        txt += self.wsSetupCMSOSGEnvironment_()
904 >        txt += '    echo "### Set SCRAM ARCH to ' + self.executable_arch + ' ###"\n'
905 >        txt += '    export SCRAM_ARCH='+self.executable_arch+'\n'
906 >        txt += 'fi\n'
907  
908          # Prepare JobType-specific part
909          scram = self.scram.commandName()
# Line 363 | Line 912 | class Cmssw(JobType):
912          txt += scram+' project CMSSW '+self.version+'\n'
913          txt += 'status=$?\n'
914          txt += 'if [ $status != 0 ] ; then\n'
915 <        txt += '   echo "SET_EXE_ENV 1 ==>ERROR CMSSW '+self.version+' not found on `hostname`" \n'
916 <        txt += '   echo "JOB_EXIT_STATUS = 5"\n'
917 <        txt += '   echo "SanityCheckCode = 5" | tee -a $RUNTIME_AREA/$repo\n'
915 >        txt += '   echo "SET_EXE_ENV 10034 ==>ERROR CMSSW '+self.version+' not found on `hostname`" \n'
916 >        txt += '   echo "JOB_EXIT_STATUS = 10034"\n'
917 >        txt += '   echo "JobExitCode=10034" | tee -a $RUNTIME_AREA/$repo\n'
918          txt += '   dumpStatus $RUNTIME_AREA/$repo\n'
919 <        txt += '   exit 5 \n'
919 >        txt += '   rm -f $RUNTIME_AREA/$repo \n'
920 >        txt += '   echo "MonitorJobID=`echo $MonitorJobID`" | tee -a $RUNTIME_AREA/$repo \n'
921 >        txt += '   echo "MonitorID=`echo $MonitorID`" | tee -a $RUNTIME_AREA/$repo\n'
922 >        ## OLI_Daniele
923 >        txt += '    if [ $middleware == OSG ]; then \n'
924 >        txt += '        echo "Remove working directory: $WORKING_DIR"\n'
925 >        txt += '        cd $RUNTIME_AREA\n'
926 >        txt += '        /bin/rm -rf $WORKING_DIR\n'
927 >        txt += '        if [ -d $WORKING_DIR ] ;then\n'
928 >        txt += '            echo "SET_CMS_ENV 10018 ==> OSG $WORKING_DIR could not be deleted on WN `hostname` after CMSSW CMSSW_0_6_1 not found on `hostname`"\n'
929 >        txt += '            echo "JOB_EXIT_STATUS = 10018"\n'
930 >        txt += '            echo "JobExitCode=10018" | tee -a $RUNTIME_AREA/$repo\n'
931 >        txt += '            dumpStatus $RUNTIME_AREA/$repo\n'
932 >        txt += '            rm -f $RUNTIME_AREA/$repo \n'
933 >        txt += '            echo "MonitorJobID=`echo $MonitorJobID`" | tee -a $RUNTIME_AREA/$repo \n'
934 >        txt += '            echo "MonitorID=`echo $MonitorID`" | tee -a $RUNTIME_AREA/$repo\n'
935 >        txt += '        fi\n'
936 >        txt += '    fi \n'
937 >        txt += '   exit 1 \n'
938          txt += 'fi \n'
939          txt += 'echo "CMSSW_VERSION =  '+self.version+'"\n'
940          txt += 'cd '+self.version+'\n'
941 +        ########## FEDE FOR DBS2 ######################
942 +        txt += 'SOFTWARE_DIR=`pwd`\n'
943 +        txt += 'echo SOFTWARE_DIR=$SOFTWARE_DIR \n'
944 +        ###############################################
945          ### needed grep for bug in scramv1 ###
946 +        txt += scram+' runtime -sh\n'
947          txt += 'eval `'+scram+' runtime -sh | grep -v SCRAMRT_LSB_JOBNAME`\n'
948 +        txt += 'echo $PATH\n'
949  
950          # Handle the arguments:
951          txt += "\n"
952 <        txt += "## ARGUMNETS: $1 Job Number\n"
380 <        # txt += "## ARGUMNETS: $2 First Event for this job\n"
381 <        # txt += "## ARGUMNETS: $3 Max Event for this job\n"
952 >        txt += "## number of arguments (first argument always jobnumber)\n"
953          txt += "\n"
954 <        txt += "narg=$#\n"
955 <        txt += "if [ $narg -lt 1 ]\n"
954 > #        txt += "narg=$#\n"
955 >        txt += "if [ $nargs -lt 2 ]\n"
956          txt += "then\n"
957 <        txt += "    echo 'SET_EXE_ENV 1 ==> ERROR Too few arguments' +$narg+ \n"
958 <        txt += '    echo "JOB_EXIT_STATUS = 1"\n'
959 <        txt += '    echo "SanityCheckCode = 1" | tee -a $RUNTIME_AREA/$repo\n'
957 >        txt += "    echo 'SET_EXE_ENV 1 ==> ERROR Too few arguments' +$nargs+ \n"
958 >        txt += '    echo "JOB_EXIT_STATUS = 50113"\n'
959 >        txt += '    echo "JobExitCode=50113" | tee -a $RUNTIME_AREA/$repo\n'
960          txt += '    dumpStatus $RUNTIME_AREA/$repo\n'
961 +        txt += '    rm -f $RUNTIME_AREA/$repo \n'
962 +        txt += '    echo "MonitorJobID=`echo $MonitorJobID`" | tee -a $RUNTIME_AREA/$repo \n'
963 +        txt += '    echo "MonitorID=`echo $MonitorID`" | tee -a $RUNTIME_AREA/$repo\n'
964 +        ## OLI_Daniele
965 +        txt += '    if [ $middleware == OSG ]; then \n'
966 +        txt += '        echo "Remove working directory: $WORKING_DIR"\n'
967 +        txt += '        cd $RUNTIME_AREA\n'
968 +        txt += '        /bin/rm -rf $WORKING_DIR\n'
969 +        txt += '        if [ -d $WORKING_DIR ] ;then\n'
970 +        txt += '            echo "SET_EXE_ENV 50114 ==> OSG $WORKING_DIR could not be deleted on WN `hostname` after Too few arguments for CRAB job wrapper"\n'
971 +        txt += '            echo "JOB_EXIT_STATUS = 50114"\n'
972 +        txt += '            echo "JobExitCode=50114" | tee -a $RUNTIME_AREA/$repo\n'
973 +        txt += '            dumpStatus $RUNTIME_AREA/$repo\n'
974 +        txt += '            rm -f $RUNTIME_AREA/$repo \n'
975 +        txt += '            echo "MonitorJobID=`echo $MonitorJobID`" | tee -a $RUNTIME_AREA/$repo \n'
976 +        txt += '            echo "MonitorID=`echo $MonitorID`" | tee -a $RUNTIME_AREA/$repo\n'
977 +        txt += '        fi\n'
978 +        txt += '    fi \n'
979          txt += "    exit 1\n"
980          txt += "fi\n"
981          txt += "\n"
393        txt += "NJob=$1\n"
394        # txt += "FirstEvent=$2\n"
395        # txt += "MaxEvents=$3\n"
982  
983          # Prepare job-specific part
984          job = common.job_list[nj]
985 <        pset = os.path.basename(job.configFilename())
986 <        txt += '\n'
987 <        txt += 'cp $RUNTIME_AREA/'+pset+' pset.cfg\n'
988 <        # txt += 'if [ -e $RUNTIME_AREA/orcarc_$CE ] ; then\n'
989 <        # txt += '  cat $RUNTIME_AREA/orcarc_$CE .orcarc >> .orcarc_tmp\n'
990 <        # txt += '  mv .orcarc_tmp .orcarc\n'
991 <        # txt += 'fi\n'
992 <        # txt += 'if [ -e $RUNTIME_AREA/init_$CE.sh ] ; then\n'
993 <        # txt += '  cp $RUNTIME_AREA/init_$CE.sh init.sh\n'
994 <        # txt += 'fi\n'
985 >        ### FEDE FOR DBS OUTPUT PUBLICATION
986 >        if (self.datasetPath):
987 >            txt += '\n'
988 >            txt += 'DatasetPath='+self.datasetPath+'\n'
989 >
990 >            datasetpath_split = self.datasetPath.split("/")
991 >            
992 >            txt += 'PrimaryDataset='+datasetpath_split[1]+'\n'
993 >            txt += 'DataTier='+datasetpath_split[2]+'\n'
994 >            #txt += 'ProcessedDataset='+datasetpath_split[3]+'\n'
995 >            txt += 'ApplicationFamily=cmsRun\n'
996 >
997 >        else:
998 >            txt += 'DatasetPath=MCDataTier\n'
999 >            txt += 'PrimaryDataset=null\n'
1000 >            txt += 'DataTier=null\n'
1001 >            #txt += 'ProcessedDataset=null\n'
1002 >            txt += 'ApplicationFamily=MCDataTier\n'
1003 >        if self.pset != None: #CarlosDaniele
1004 >            pset = os.path.basename(job.configFilename())
1005 >            txt += '\n'
1006 >            txt += 'cp  $RUNTIME_AREA/'+pset+' .\n'
1007 >            if (self.datasetPath): # standard job
1008 >                #txt += 'InputFiles=$2\n'
1009 >                txt += 'InputFiles=${args[1]}\n'
1010 >                txt += 'MaxEvents=${args[2]}\n'
1011 >                txt += 'SkipEvents=${args[3]}\n'
1012 >                txt += 'echo "Inputfiles:<$InputFiles>"\n'
1013 >                txt += 'sed "s#{\'INPUT\'}#$InputFiles#" '+pset+' > tmp && mv -f tmp '+pset+'\n'
1014 >                txt += 'echo "MaxEvents:<$MaxEvents>"\n'
1015 >                txt += 'sed "s#INPUTMAXEVENTS#$MaxEvents#" '+pset+' > tmp && mv -f tmp '+pset+'\n'
1016 >                txt += 'echo "SkipEvents:<$SkipEvents>"\n'
1017 >                txt += 'sed "s#INPUTSKIPEVENTS#$SkipEvents#" '+pset+' > tmp && mv -f tmp '+pset+'\n'
1018 >            else:  # pythia like job
1019 >                seedIndex=1
1020 >                if (self.firstRun):
1021 >                    txt += 'FirstRun=${args['+str(seedIndex)+']}\n'
1022 >                    txt += 'echo "FirstRun: <$FirstRun>"\n'
1023 >                    txt += 'sed "s#\<INPUTFIRSTRUN\>#$FirstRun#" '+pset+' > tmp && mv -f tmp '+pset+'\n'
1024 >                    seedIndex=seedIndex+1
1025 >
1026 >                if (self.sourceSeed):
1027 >                    txt += 'Seed=${args['+str(seedIndex)+']}\n'
1028 >                    txt += 'sed "s#\<INPUT\>#$Seed#" '+pset+' > tmp && mv -f tmp '+pset+'\n'
1029 >                    seedIndex=seedIndex+1
1030 >                    ## the following seeds are not always present
1031 >                    if (self.sourceSeedVtx):
1032 >                        txt += 'VtxSeed=${args['+str(seedIndex)+']}\n'
1033 >                        txt += 'echo "VtxSeed: <$VtxSeed>"\n'
1034 >                        txt += 'sed "s#\<INPUTVTX\>#$VtxSeed#" '+pset+' > tmp && mv -f tmp '+pset+'\n'
1035 >                        seedIndex += 1
1036 >                    if (self.sourceSeedG4):
1037 >                        txt += 'G4Seed=${args['+str(seedIndex)+']}\n'
1038 >                        txt += 'echo "G4Seed: <$G4Seed>"\n'
1039 >                        txt += 'sed "s#\<INPUTG4\>#$G4Seed#" '+pset+' > tmp && mv -f tmp '+pset+'\n'
1040 >                        seedIndex += 1
1041 >                    if (self.sourceSeedMix):
1042 >                        txt += 'mixSeed=${args['+str(seedIndex)+']}\n'
1043 >                        txt += 'echo "MixSeed: <$mixSeed>"\n'
1044 >                        txt += 'sed "s#\<INPUTMIX\>#$mixSeed#" '+pset+' > tmp && mv -f tmp '+pset+'\n'
1045 >                        seedIndex += 1
1046 >                    pass
1047 >                pass
1048 >            txt += 'mv -f '+pset+' pset.cfg\n'
1049  
1050          if len(self.additional_inbox_files) > 0:
1051 <            for file in self.additional_inbox_files:
1052 <                txt += 'if [ -e $RUNTIME_AREA/'+file+' ] ; then\n'
1053 <                txt += '   cp $RUNTIME_AREA/'+file+' .\n'
414 <                txt += '   chmod +x '+file+'\n'
415 <                txt += 'fi\n'
1051 >            txt += 'if [ -e $RUNTIME_AREA/'+self.additional_tgz_name+' ] ; then\n'
1052 >            txt += '  tar xzvf $RUNTIME_AREA/'+self.additional_tgz_name+'\n'
1053 >            txt += 'fi\n'
1054              pass
1055  
1056 <        # txt += '\n'
1057 <        # txt += 'chmod +x ./init.sh\n'
1058 <        # txt += './init.sh\n'
1059 <        # txt += 'exitStatus=$?\n'
1060 <        # txt += 'if [ $exitStatus != 0 ] ; then\n'
1061 <        # txt += '  echo "SET_EXE_ENV 1 ==> ERROR StageIn init script failed"\n'
1062 <        # txt += '  echo "JOB_EXIT_STATUS = $exitStatus" \n'
1063 <        # txt += '  echo "SanityCheckCode = $exitStatus" | tee -a $RUNTIME_AREA/$repo\n'
1064 <        # txt += '  dumpStatus $RUNTIME_AREA/$repo\n'
1065 <        # txt += '  exit $exitStatus\n'
1066 <        # txt += 'fi\n'
1067 <        # txt += "echo 'SET_EXE_ENV 0 ==> job setup ok'\n"
1068 <        txt += 'echo "### END JOB SETUP ENVIRONMENT ###"\n\n'
1069 <
1070 <        # txt += 'echo "FirstEvent=$FirstEvent" >> .orcarc\n'
1071 <        # txt += 'echo "MaxEvents=$MaxEvents" >> .orcarc\n'
1072 <        # if self.ML:
435 <        #     txt += 'echo "MonalisaJobId=$NJob" >> .orcarc\n'
1056 >        if self.pset != None: #CarlosDaniele
1057 >            txt += 'echo "### END JOB SETUP ENVIRONMENT ###"\n\n'
1058 >        
1059 >            txt += '\n'
1060 >            txt += 'echo "***** cat pset.cfg *********"\n'
1061 >            txt += 'cat pset.cfg\n'
1062 >            txt += 'echo "****** end pset.cfg ********"\n'
1063 >            txt += '\n'
1064 >            ### FEDE FOR DBS OUTPUT PUBLICATION
1065 >            txt += 'PSETHASH=`EdmConfigHash < pset.cfg` \n'
1066 >            txt += 'echo "PSETHASH = $PSETHASH" \n'
1067 >            ##############
1068 >            txt += '\n'
1069 >            # txt += 'echo "***** cat pset1.cfg *********"\n'
1070 >            # txt += 'cat pset1.cfg\n'
1071 >            # txt += 'echo "****** end pset1.cfg ********"\n'
1072 >        return txt
1073  
1074 <        txt += '\n'
1075 <        txt += 'echo "***** cat pset.cfg *********"\n'
1076 <        txt += 'cat pset.cfg\n'
1077 <        txt += 'echo "****** end pset.cfg ********"\n'
1074 >    def wsBuildExe(self, nj=0):
1075 >        """
1076 >        Put in the script the commands to build an executable
1077 >        or a library.
1078 >        """
1079 >
1080 >        txt = ""
1081 >
1082 >        if os.path.isfile(self.tgzNameWithPath):
1083 >            txt += 'echo "tar xzvf $RUNTIME_AREA/'+os.path.basename(self.tgzNameWithPath)+'"\n'
1084 >            txt += 'tar xzvf $RUNTIME_AREA/'+os.path.basename(self.tgzNameWithPath)+'\n'
1085 >            txt += 'untar_status=$? \n'
1086 >            txt += 'if [ $untar_status -ne 0 ]; then \n'
1087 >            txt += '   echo "SET_EXE 1 ==> ERROR Untarring .tgz file failed"\n'
1088 >            txt += '   echo "JOB_EXIT_STATUS = $untar_status" \n'
1089 >            txt += '   echo "JobExitCode=$untar_status" | tee -a $RUNTIME_AREA/$repo\n'
1090 >            txt += '   if [ $middleware == OSG ]; then \n'
1091 >            txt += '       echo "Remove working directory: $WORKING_DIR"\n'
1092 >            txt += '       cd $RUNTIME_AREA\n'
1093 >            txt += '       /bin/rm -rf $WORKING_DIR\n'
1094 >            txt += '       if [ -d $WORKING_DIR ] ;then\n'
1095 >            txt += '           echo "SET_EXE 50999 ==> OSG $WORKING_DIR could not be deleted on WN `hostname` after Untarring .tgz file failed"\n'
1096 >            txt += '           echo "JOB_EXIT_STATUS = 50999"\n'
1097 >            txt += '           echo "JobExitCode=50999" | tee -a $RUNTIME_AREA/$repo\n'
1098 >            txt += '           dumpStatus $RUNTIME_AREA/$repo\n'
1099 >            txt += '           rm -f $RUNTIME_AREA/$repo \n'
1100 >            txt += '           echo "MonitorJobID=`echo $MonitorJobID`" | tee -a $RUNTIME_AREA/$repo \n'
1101 >            txt += '           echo "MonitorID=`echo $MonitorID`" | tee -a $RUNTIME_AREA/$repo\n'
1102 >            txt += '       fi\n'
1103 >            txt += '   fi \n'
1104 >            txt += '   \n'
1105 >            txt += '   exit 1 \n'
1106 >            txt += 'else \n'
1107 >            txt += '   echo "Successful untar" \n'
1108 >            txt += 'fi \n'
1109 >            txt += '\n'
1110 >            txt += 'echo "Include ProdAgentApi and PRODCOMMON in PYTHONPATH"\n'
1111 >            txt += 'if [ -z "$PYTHONPATH" ]; then\n'
1112 >            #### FEDE FOR DBS OUTPUT PUBLICATION
1113 >            txt += '   export PYTHONPATH=$SOFTWARE_DIR/ProdAgentApi:$SOFTWARE_DIR/ProdCommon\n'
1114 >            #txt += '   export PYTHONPATH=`pwd`/ProdAgentApi:`pwd`/ProdCommon\n'
1115 >            #txt += '   export PYTHONPATH=ProdAgentApi\n'
1116 >            txt += 'else\n'
1117 >            txt += '   export PYTHONPATH=$SOFTWARE_DIR/ProdAgentApi:$SOFTWARE_DIR/ProdCommon:${PYTHONPATH}\n'
1118 >            #txt += '   export PYTHONPATH=`pwd`/ProdAgentApi:`pwd`/ProdCommon:${PYTHONPATH}\n'
1119 >            #txt += '   export PYTHONPATH=ProdAgentApi:${PYTHONPATH}\n'
1120 >            txt += 'echo "PYTHONPATH=$PYTHONPATH"\n'
1121 >            ###################  
1122 >            txt += 'fi\n'
1123 >            txt += '\n'
1124 >
1125 >            pass
1126 >        
1127          return txt
1128  
1129      def modifySteeringCards(self, nj):
# Line 447 | Line 1133 | class Cmssw(JobType):
1133          """
1134          
1135      def executableName(self):
1136 <        return self.executable
1136 >        if self.scriptExe: #CarlosDaniele
1137 >            return "sh "
1138 >        else:
1139 >            return self.executable
1140  
1141      def executableArgs(self):
1142 <        return "-p pset.cfg"
1142 >        if self.scriptExe:#CarlosDaniele
1143 >            return   self.scriptExe + " $NJob"
1144 >        else:
1145 >            # if >= CMSSW_1_5_X, add -e
1146 >            version_array = self.scram.getSWVersion().split('_')
1147 >            major = 0
1148 >            minor = 0
1149 >            try:
1150 >                major = int(version_array[1])
1151 >                minor = int(version_array[2])
1152 >            except:
1153 >                msg = "Cannot parse CMSSW version string: " + "_".join(version_array) + " for major and minor release number!"  
1154 >                raise CrabException(msg)
1155 >            if major >= 1 and minor >= 5 :
1156 >                return " -e -p pset.cfg"
1157 >            else:
1158 >                return " -p pset.cfg"
1159  
1160      def inputSandbox(self, nj):
1161          """
1162          Returns a list of filenames to be put in JDL input sandbox.
1163          """
1164          inp_box = []
1165 <        # dict added to delete duplicate from input sandbox file list
1166 <        seen = {}
1165 >        # # dict added to delete duplicate from input sandbox file list
1166 >        # seen = {}
1167          ## code
1168          if os.path.isfile(self.tgzNameWithPath):
1169              inp_box.append(self.tgzNameWithPath)
1170 +        if os.path.isfile(self.MLtgzfile):
1171 +            inp_box.append(self.MLtgzfile)
1172          ## config
1173 <        inp_box.append(common.job_list[nj].configFilename())
1173 >        if not self.pset is None:
1174 >            inp_box.append(common.work_space.pathForTgz() + 'job/' + self.configFilename())
1175          ## additional input files
1176 <        for file in self.additional_inbox_files:
1177 <            inp_box.append(common.work_space.cwdDir()+file)
470 <        #print "sono inputSandbox, inp_box = ", inp_box
1176 >        tgz = self.additionalInputFileTgz()
1177 >        inp_box.append(tgz)
1178          return inp_box
1179  
1180      def outputSandbox(self, nj):
# Line 476 | Line 1183 | class Cmssw(JobType):
1183          """
1184          out_box = []
1185  
479        stdout=common.job_list[nj].stdout()
480        stderr=common.job_list[nj].stderr()
481
1186          ## User Declared output files
1187 <        for out in self.output_file:
1187 >        for out in (self.output_file+self.output_file_sandbox):
1188              n_out = nj + 1
1189              out_box.append(self.numberFile_(out,str(n_out)))
1190          return out_box
487        return []
1191  
1192      def prepareSteeringCards(self):
1193          """
1194          Make initial modifications of the user's steering card file.
1195          """
493        infile = open(self.pset,'r')
494            
495        outfile = open(common.work_space.jobDir()+self.name()+'.cfg', 'w')
496          
497        outfile.write('\n\n##### The following cards have been created by CRAB: DO NOT TOUCH #####\n')
498
499        outfile.write('InputCollections=/System/'+self.owner+'/'+self.dataset+'/'+self.dataset+'\n')
500
501        infile.close()
502        outfile.close()
1196          return
1197  
1198      def wsRenameOutput(self, nj):
# Line 508 | Line 1201 | class Cmssw(JobType):
1201          """
1202  
1203          txt = '\n'
1204 <        file_list = ''
1205 <        for fileWithSuffix in self.output_file:
1204 >        txt += '# directory content\n'
1205 >        txt += 'ls \n'
1206 >
1207 >        txt += 'output_exit_status=0\n'
1208 >        
1209 >        for fileWithSuffix in (self.output_file_sandbox):
1210              output_file_num = self.numberFile_(fileWithSuffix, '$NJob')
514            file_list=file_list+output_file_num+' '
1211              txt += '\n'
1212 <            txt += 'ls \n'
1212 >            txt += '# check output file\n'
1213 >            txt += 'if [ -e ./'+fileWithSuffix+' ] ; then\n'
1214 >            txt += '    mv '+fileWithSuffix+' $RUNTIME_AREA\n'
1215 >            txt += '    cp $RUNTIME_AREA/'+fileWithSuffix+' $RUNTIME_AREA/'+output_file_num+'\n'
1216 >            txt += 'else\n'
1217 >            txt += '    exit_status=60302\n'
1218 >            txt += '    echo "ERROR: Problem with output file '+fileWithSuffix+'"\n'
1219 >            if common.scheduler.boss_scheduler_name == 'condor_g':
1220 >                txt += '    if [ $middleware == OSG ]; then \n'
1221 >                txt += '        echo "prepare dummy output file"\n'
1222 >                txt += '        echo "Processing of job output failed" > $RUNTIME_AREA/'+output_file_num+'\n'
1223 >                txt += '    fi \n'
1224 >            txt += 'fi\n'
1225 >        
1226 >        for fileWithSuffix in (self.output_file):
1227 >            output_file_num = self.numberFile_(fileWithSuffix, '$NJob')
1228              txt += '\n'
1229 <            txt += 'ls '+fileWithSuffix+'\n'
1230 <            txt += 'exe_result=$?\n'
1231 <            txt += 'if [ $exe_result -ne 0 ] ; then\n'
1232 <            txt += '   echo "ERROR: No output file to manage"\n'
522 <            txt += '   echo "JOB_EXIT_STATUS = $exe_result"\n'
523 <            txt += '   echo "SanityCheckCode = $exe_result" | tee -a $RUNTIME_AREA/$repo\n'
524 <            txt += '   dumpStatus $RUNTIME_AREA/$repo\n'
525 <            txt += '   exit $exe_result \n'
1229 >            txt += '# check output file\n'
1230 >            txt += 'if [ -e ./'+fileWithSuffix+' ] ; then\n'
1231 >            txt += '    mv '+fileWithSuffix+' $RUNTIME_AREA\n'
1232 >            txt += '    cp $RUNTIME_AREA/'+fileWithSuffix+' $RUNTIME_AREA/'+output_file_num+'\n'
1233              txt += 'else\n'
1234 <            txt += '   cp '+fileWithSuffix+' $RUNTIME_AREA/'+output_file_num+'\n'
1234 >            txt += '    exit_status=60302\n'
1235 >            txt += '    echo "ERROR: Problem with output file '+fileWithSuffix+'"\n'
1236 >            txt += '    echo "JOB_EXIT_STATUS = $exit_status"\n'
1237 >            txt += '    output_exit_status=$exit_status\n'
1238 >            if common.scheduler.boss_scheduler_name == 'condor_g':
1239 >                txt += '    if [ $middleware == OSG ]; then \n'
1240 >                txt += '        echo "prepare dummy output file"\n'
1241 >                txt += '        echo "Processing of job output failed" > $RUNTIME_AREA/'+output_file_num+'\n'
1242 >                txt += '    fi \n'
1243              txt += 'fi\n'
1244 <            txt += 'cd $RUNTIME_AREA\n'
1245 <                      
1246 <            pass
1247 <      
1248 <        file_list=file_list[:-1]
1249 <        txt += 'file_list="'+file_list+'"\n'
1244 >        file_list = []
1245 >        for fileWithSuffix in (self.output_file):
1246 >             file_list.append(self.numberFile_(fileWithSuffix, '$NJob'))
1247 >            
1248 >        txt += 'file_list="'+string.join(file_list,' ')+'"\n'
1249 >        txt += 'cd $RUNTIME_AREA\n'
1250          return txt
1251  
1252      def numberFile_(self, file, txt):
# Line 542 | Line 1257 | class Cmssw(JobType):
1257          # take away last extension
1258          name = p[0]
1259          for x in p[1:-1]:
1260 <           name=name+"."+x
1260 >            name=name+"."+x
1261          # add "_txt"
1262          if len(p)>1:
1263 <          ext = p[len(p)-1]
1264 <          #result = name + '_' + str(txt) + "." + ext
550 <          result = name + '_' + txt + "." + ext
1263 >            ext = p[len(p)-1]
1264 >            result = name + '_' + txt + "." + ext
1265          else:
1266 <          #result = name + '_' + str(txt)
553 <          result = name + '_' + txt
1266 >            result = name + '_' + txt
1267          
1268          return result
1269  
1270 <    def getRequirements(self):
1270 >    def getRequirements(self, nj=[]):
1271          """
1272          return job requirements to add to jdl files
1273          """
1274          req = ''
1275 <        if common.analisys_common_info['sites']:
1276 <            if common.analisys_common_info['sw_version']:
1277 <                req='Member("VO-cms-' + \
1278 <                     common.analisys_common_info['sw_version'] + \
1279 <                     '", other.GlueHostApplicationSoftwareRunTimeEnvironment)'
1280 <            if len(common.analisys_common_info['sites'])>0:
1281 <                req = req + ' && ('
1282 <                for i in range(len(common.analisys_common_info['sites'])):
1283 <                    req = req + 'other.GlueCEInfoHostName == "' \
1284 <                         + common.analisys_common_info['sites'][i] + '"'
1285 <                    if ( i < (int(len(common.analisys_common_info['sites']) - 1)) ):
1286 <                        req = req + ' || '
1287 <            req = req + ')'
575 <        #print "req = ", req
1275 >        if self.version:
1276 >            req='Member("VO-cms-' + \
1277 >                 self.version + \
1278 >                 '", other.GlueHostApplicationSoftwareRunTimeEnvironment)'
1279 >        ## SL add requirement for OS version only if SL4
1280 >        #reSL4 = re.compile( r'slc4' )
1281 >        if self.executable_arch: # and reSL4.search(self.executable_arch):
1282 >            req+=' && Member("VO-cms-' + \
1283 >                 self.executable_arch + \
1284 >                 '", other.GlueHostApplicationSoftwareRunTimeEnvironment)'
1285 >
1286 >        req = req + ' && (other.GlueHostNetworkAdapterOutboundIP)'
1287 >
1288          return req
1289 +
1290 +    def configFilename(self):
1291 +        """ return the config filename """
1292 +        return self.name()+'.cfg'
1293 +
1294 +    ### OLI_DANIELE
1295 +    def wsSetupCMSOSGEnvironment_(self):
1296 +        """
1297 +        Returns part of a job script which is prepares
1298 +        the execution environment and which is common for all CMS jobs.
1299 +        """
1300 +        txt = '\n'
1301 +        txt += '   echo "### SETUP CMS OSG  ENVIRONMENT ###"\n'
1302 +        txt += '   if [ -f $GRID3_APP_DIR/cmssoft/cmsset_default.sh ] ;then\n'
1303 +        txt += '      # Use $GRID3_APP_DIR/cmssoft/cmsset_default.sh to setup cms software\n'
1304 +        txt += '       export SCRAM_ARCH='+self.executable_arch+'\n'
1305 +        txt += '       source $GRID3_APP_DIR/cmssoft/cmsset_default.sh '+self.version+'\n'
1306 +        txt += '   elif [ -f $OSG_APP/cmssoft/cms/cmsset_default.sh ] ;then\n'
1307 +        txt += '      # Use $OSG_APP/cmssoft/cms/cmsset_default.sh to setup cms software\n'
1308 +        txt += '       export SCRAM_ARCH='+self.executable_arch+'\n'
1309 +        txt += '       source $OSG_APP/cmssoft/cms/cmsset_default.sh '+self.version+'\n'
1310 +        txt += '   else\n'
1311 +        txt += '       echo "SET_CMS_ENV 10020 ==> ERROR $GRID3_APP_DIR/cmssoft/cmsset_default.sh and $OSG_APP/cmssoft/cms/cmsset_default.sh file not found"\n'
1312 +        txt += '       echo "JOB_EXIT_STATUS = 10020"\n'
1313 +        txt += '       echo "JobExitCode=10020" | tee -a $RUNTIME_AREA/$repo\n'
1314 +        txt += '       dumpStatus $RUNTIME_AREA/$repo\n'
1315 +        txt += '       rm -f $RUNTIME_AREA/$repo \n'
1316 +        txt += '       echo "MonitorJobID=`echo $MonitorJobID`" | tee -a $RUNTIME_AREA/$repo \n'
1317 +        txt += '       echo "MonitorID=`echo $MonitorID`" | tee -a $RUNTIME_AREA/$repo\n'
1318 +        txt += '       exit 1\n'
1319 +        txt += '\n'
1320 +        txt += '       echo "Remove working directory: $WORKING_DIR"\n'
1321 +        txt += '       cd $RUNTIME_AREA\n'
1322 +        txt += '       /bin/rm -rf $WORKING_DIR\n'
1323 +        txt += '       if [ -d $WORKING_DIR ] ;then\n'
1324 +        txt += '           echo "SET_CMS_ENV 10017 ==> OSG $WORKING_DIR could not be deleted on WN `hostname` after $GRID3_APP_DIR/cmssoft/cmsset_default.sh and $OSG_APP/cmssoft/cms/cmsset_default.sh file not found"\n'
1325 +        txt += '           echo "JOB_EXIT_STATUS = 10017"\n'
1326 +        txt += '           echo "JobExitCode=10017" | tee -a $RUNTIME_AREA/$repo\n'
1327 +        txt += '           dumpStatus $RUNTIME_AREA/$repo\n'
1328 +        txt += '           rm -f $RUNTIME_AREA/$repo \n'
1329 +        txt += '           echo "MonitorJobID=`echo $MonitorJobID`" | tee -a $RUNTIME_AREA/$repo \n'
1330 +        txt += '           echo "MonitorID=`echo $MonitorID`" | tee -a $RUNTIME_AREA/$repo\n'
1331 +        txt += '       fi\n'
1332 +        txt += '\n'
1333 +        txt += '       exit 1\n'
1334 +        txt += '   fi\n'
1335 +        txt += '\n'
1336 +        txt += '   echo "SET_CMS_ENV 0 ==> setup cms environment ok"\n'
1337 +        txt += '   echo " END SETUP CMS OSG  ENVIRONMENT "\n'
1338 +
1339 +        return txt
1340 +
1341 +    ### OLI_DANIELE
1342 +    def wsSetupCMSLCGEnvironment_(self):
1343 +        """
1344 +        Returns part of a job script which is prepares
1345 +        the execution environment and which is common for all CMS jobs.
1346 +        """
1347 +        txt  = '   \n'
1348 +        txt += '   echo " ### SETUP CMS LCG  ENVIRONMENT ### "\n'
1349 +        txt += '   if [ ! $VO_CMS_SW_DIR ] ;then\n'
1350 +        txt += '       echo "SET_CMS_ENV 10031 ==> ERROR CMS software dir not found on WN `hostname`"\n'
1351 +        txt += '       echo "JOB_EXIT_STATUS = 10031" \n'
1352 +        txt += '       echo "JobExitCode=10031" | tee -a $RUNTIME_AREA/$repo\n'
1353 +        txt += '       dumpStatus $RUNTIME_AREA/$repo\n'
1354 +        txt += '       rm -f $RUNTIME_AREA/$repo \n'
1355 +        txt += '       echo "MonitorJobID=`echo $MonitorJobID`" | tee -a $RUNTIME_AREA/$repo \n'
1356 +        txt += '       echo "MonitorID=`echo $MonitorID`" | tee -a $RUNTIME_AREA/$repo\n'
1357 +        txt += '       exit 1\n'
1358 +        txt += '   else\n'
1359 +        txt += '       echo "Sourcing environment... "\n'
1360 +        txt += '       if [ ! -s $VO_CMS_SW_DIR/cmsset_default.sh ] ;then\n'
1361 +        txt += '           echo "SET_CMS_ENV 10020 ==> ERROR cmsset_default.sh file not found into dir $VO_CMS_SW_DIR"\n'
1362 +        txt += '           echo "JOB_EXIT_STATUS = 10020"\n'
1363 +        txt += '           echo "JobExitCode=10020" | tee -a $RUNTIME_AREA/$repo\n'
1364 +        txt += '           dumpStatus $RUNTIME_AREA/$repo\n'
1365 +        txt += '           rm -f $RUNTIME_AREA/$repo \n'
1366 +        txt += '           echo "MonitorJobID=`echo $MonitorJobID`" | tee -a $RUNTIME_AREA/$repo \n'
1367 +        txt += '           echo "MonitorID=`echo $MonitorID`" | tee -a $RUNTIME_AREA/$repo\n'
1368 +        txt += '           exit 1\n'
1369 +        txt += '       fi\n'
1370 +        txt += '       echo "sourcing $VO_CMS_SW_DIR/cmsset_default.sh"\n'
1371 +        txt += '       source $VO_CMS_SW_DIR/cmsset_default.sh\n'
1372 +        txt += '       result=$?\n'
1373 +        txt += '       if [ $result -ne 0 ]; then\n'
1374 +        txt += '           echo "SET_CMS_ENV 10032 ==> ERROR problem sourcing $VO_CMS_SW_DIR/cmsset_default.sh"\n'
1375 +        txt += '           echo "JOB_EXIT_STATUS = 10032"\n'
1376 +        txt += '           echo "JobExitCode=10032" | tee -a $RUNTIME_AREA/$repo\n'
1377 +        txt += '           dumpStatus $RUNTIME_AREA/$repo\n'
1378 +        txt += '           rm -f $RUNTIME_AREA/$repo \n'
1379 +        txt += '           echo "MonitorJobID=`echo $MonitorJobID`" | tee -a $RUNTIME_AREA/$repo \n'
1380 +        txt += '           echo "MonitorID=`echo $MonitorID`" | tee -a $RUNTIME_AREA/$repo\n'
1381 +        txt += '           exit 1\n'
1382 +        txt += '       fi\n'
1383 +        txt += '   fi\n'
1384 +        txt += '   \n'
1385 +        txt += '   echo "SET_CMS_ENV 0 ==> setup cms environment ok"\n'
1386 +        txt += '   echo "### END SETUP CMS LCG ENVIRONMENT ###"\n'
1387 +        return txt
1388 +
1389 +    ### FEDE FOR DBS OUTPUT PUBLICATION
1390 +    def modifyReport(self, nj):
1391 +        """
1392 +        insert the part of the script that modifies the FrameworkJob Report
1393 +        """
1394 +
1395 +        txt = ''
1396 +        try:
1397 +            publish_data = int(self.cfg_params['USER.publish_data'])          
1398 +        except KeyError:
1399 +            publish_data = 0
1400 +        if (publish_data == 1):  
1401 +            txt += 'echo "Modify Job Report" \n'
1402 +            #txt += 'chmod a+x $RUNTIME_AREA/'+self.version+'/ProdAgentApi/FwkJobRep/ModifyJobReport.py\n'
1403 +            ################ FEDE FOR DBS2 #############################################
1404 +            txt += 'chmod a+x $SOFTWARE_DIR/ProdAgentApi/FwkJobRep/ModifyJobReport.py\n'
1405 +            #############################################################################
1406 +            #try:
1407 +            #    publish_data = int(self.cfg_params['USER.publish_data'])          
1408 +            #except KeyError:
1409 +            #    publish_data = 0
1410 +
1411 +            txt += 'if [ -z "$SE" ]; then\n'
1412 +            txt += '    SE="" \n'
1413 +            txt += 'fi \n'
1414 +            txt += 'if [ -z "$SE_PATH" ]; then\n'
1415 +            txt += '    SE_PATH="" \n'
1416 +            txt += 'fi \n'
1417 +            txt += 'echo "SE = $SE"\n'
1418 +            txt += 'echo "SE_PATH = $SE_PATH"\n'
1419 +
1420 +        #if (publish_data == 1):  
1421 +            #processedDataset = self.cfg_params['USER.processed_datasetname']
1422 +            processedDataset = self.cfg_params['USER.publish_data_name']
1423 +            txt += 'ProcessedDataset='+processedDataset+'\n'
1424 +            #### LFN=/store/user/<user>/processedDataset_PSETHASH
1425 +            txt += 'if [ "$SE_PATH" == "" ]; then\n'
1426 +            #### FEDE: added slash in LFN ##############
1427 +            txt += '    FOR_LFN=/copy_problems/ \n'
1428 +            txt += 'else \n'
1429 +            txt += '    tmp=`echo $SE_PATH | awk -F \'store\' \'{print$2}\'` \n'
1430 +            #####  FEDE TO BE CHANGED, BECAUSE STORE IS HARDCODED!!!! ########
1431 +            txt += '    FOR_LFN=/store$tmp \n'
1432 +            txt += 'fi \n'
1433 +            txt += 'echo "ProcessedDataset = $ProcessedDataset"\n'
1434 +            txt += 'echo "FOR_LFN = $FOR_LFN" \n'
1435 +            txt += 'echo "CMSSW_VERSION = $CMSSW_VERSION"\n\n'
1436 +            #txt += 'echo "$RUNTIME_AREA/'+self.version+'/ProdAgentApi/FwkJobRep/ModifyJobReport.py crab_fjr_$NJob.xml $NJob $FOR_LFN $PrimaryDataset $DataTier $ProcessedDataset $ApplicationFamily $executable $CMSSW_VERSION $PSETHASH $SE $SE_PATH"\n'
1437 +            txt += 'echo "$SOFTWARE_DIR/ProdAgentApi/FwkJobRep/ModifyJobReport.py crab_fjr_$NJob.xml $NJob $FOR_LFN $PrimaryDataset $DataTier $ProcessedDataset $ApplicationFamily $executable $CMSSW_VERSION $PSETHASH $SE $SE_PATH"\n'
1438 +            txt += '$SOFTWARE_DIR/ProdAgentApi/FwkJobRep/ModifyJobReport.py crab_fjr_$NJob.xml $NJob $FOR_LFN $PrimaryDataset $DataTier $ProcessedDataset $ApplicationFamily $executable $CMSSW_VERSION $PSETHASH $SE $SE_PATH\n'
1439 +            #txt += '$RUNTIME_AREA/'+self.version+'/ProdAgentApi/FwkJobRep/ModifyJobReport.py crab_fjr_$NJob.xml $NJob $FOR_LFN $PrimaryDataset $DataTier $ProcessedDataset $ApplicationFamily $executable $CMSSW_VERSION $PSETHASH $SE $SE_PATH\n'
1440 +      
1441 +            txt += 'modifyReport_result=$?\n'
1442 +            txt += 'echo modifyReport_result = $modifyReport_result\n'
1443 +            txt += 'if [ $modifyReport_result -ne 0 ]; then\n'
1444 +            txt += '    exit_status=1\n'
1445 +            txt += '    echo "ERROR: Problem with ModifyJobReport"\n'
1446 +            txt += 'else\n'
1447 +            txt += '    mv NewFrameworkJobReport.xml crab_fjr_$NJob.xml\n'
1448 +            txt += 'fi\n'
1449 +        else:
1450 +            txt += 'echo "no data publication required"\n'
1451 +            #txt += 'ProcessedDataset=no_data_to_publish \n'
1452 +            #### FEDE: added slash in LFN ##############
1453 +            #txt += 'FOR_LFN=/local/ \n'
1454 +            #txt += 'echo "ProcessedDataset = $ProcessedDataset"\n'
1455 +            #txt += 'echo "FOR_LFN = $FOR_LFN" \n'
1456 +        return txt
1457 +
1458 +    def cleanEnv(self):
1459 +        ### OLI_DANIELE
1460 +        txt = ''
1461 +        txt += 'if [ $middleware == OSG ]; then\n'  
1462 +        txt += '    cd $RUNTIME_AREA\n'
1463 +        txt += '    echo "Remove working directory: $WORKING_DIR"\n'
1464 +        txt += '    /bin/rm -rf $WORKING_DIR\n'
1465 +        txt += '    if [ -d $WORKING_DIR ] ;then\n'
1466 +        txt += '              echo "SET_EXE 60999 ==> OSG $WORKING_DIR could not be deleted on WN `hostname` after cleanup of WN"\n'
1467 +        txt += '              echo "JOB_EXIT_STATUS = 60999"\n'
1468 +        txt += '              echo "JobExitCode=60999" | tee -a $RUNTIME_AREA/$repo\n'
1469 +        txt += '              dumpStatus $RUNTIME_AREA/$repo\n'
1470 +        txt += '        rm -f $RUNTIME_AREA/$repo \n'
1471 +        txt += '        echo "MonitorJobID=`echo $MonitorJobID`" | tee -a $RUNTIME_AREA/$repo \n'
1472 +        txt += '        echo "MonitorID=`echo $MonitorID`" | tee -a $RUNTIME_AREA/$repo\n'
1473 +        txt += '    fi\n'
1474 +        txt += 'fi\n'
1475 +        txt += '\n'
1476 +        return txt
1477 +
1478 +    def setParam_(self, param, value):
1479 +        self._params[param] = value
1480 +
1481 +    def getParams(self):
1482 +        return self._params
1483 +
1484 +    def setTaskid_(self):
1485 +        self._taskId = self.cfg_params['taskId']
1486 +        
1487 +    def getTaskid(self):
1488 +        return self._taskId
1489 +
1490 +    def uniquelist(self, old):
1491 +        """
1492 +        remove duplicates from a list
1493 +        """
1494 +        nd={}
1495 +        for e in old:
1496 +            nd[e]=0
1497 +        return nd.keys()
1498 +
1499 +
1500 +    def checkOut(self, limit):
1501 +        """
1502 +        check the dimension of the output files
1503 +        """
1504 +        txt = 'echo "*****************************************"\n'
1505 +        txt += 'echo "** Starting output sandbox limit check **"\n'
1506 +        txt += 'echo "*****************************************"\n'
1507 +        allOutFiles = ""
1508 +        listOutFiles = []
1509 +        for fileOut in (self.output_file+self.output_file_sandbox):
1510 +             if fileOut.find('crab_fjr') == -1:
1511 +                 allOutFiles = allOutFiles + " " + self.numberFile_(fileOut, '$NJob')
1512 +                 listOutFiles.append(self.numberFile_(fileOut, '$NJob'))
1513 +        txt += 'echo "OUTPUT files: '+str(allOutFiles)+'";\n'
1514 +        txt += 'ls -gGhrta;\n'
1515 +        txt += 'sum=0;\n'
1516 +        txt += 'for file in '+str(allOutFiles)+' ; do\n'
1517 +        txt += '    if [ -e $file ]; then\n'
1518 +        txt += '        tt=`ls -gGrta $file | awk \'{ print $3 }\'`\n'
1519 +        txt += '        sum=`expr $sum + $tt`\n'
1520 +        txt += '    else\n'
1521 +        txt += '        echo "WARNING: output file $file not found!"\n'
1522 +        txt += '    fi\n'
1523 +        txt += 'done\n'
1524 +        txt += 'echo "Total Output dimension: $sum";\n'
1525 +        txt += 'limit='+str(limit)+';\n'
1526 +        txt += 'echo "OUTPUT FILES LIMIT SET TO: $limit";\n'
1527 +        txt += 'if [ $limit -lt $sum ]; then\n'
1528 +        txt += '    echo "WARNING: output files have to big size - something will be lost;"\n'
1529 +        txt += '    echo "         checking the output file sizes..."\n'
1530 +        """
1531 +        txt += '    dim=0;\n'
1532 +        txt += '    exclude=0;\n'
1533 +        txt += '    for files in '+str(allOutFiles)+' ; do\n'
1534 +        txt += '        sumTemp=0;\n'
1535 +        txt += '        for file2 in '+str(allOutFiles)+' ; do\n'
1536 +        txt += '            if [ $file != $file2 ]; then\n'
1537 +        txt += '                tt=`ls -gGrta $file2 | awk \'{ print $3 }\';`\n'
1538 +        txt += '                sumTemp=`expr $sumTemp + $tt`;\n'
1539 +        txt += '            fi\n'
1540 +        txt += '        done\n'
1541 +        txt += '        if [ $sumTemp -lt $limit ]; then\n'
1542 +        txt += '            if [ $dim -lt $sumTemp ]; then\n'
1543 +        txt += '                dim=$sumTemp;\n'
1544 +        txt += '                exclude=$file;\n'
1545 +        txt += '            fi\n'
1546 +        txt += '        fi\n'
1547 +        txt += '    done\n'
1548 +        txt += '    echo "Dimension calculated: $dim"; echo "File to exclude: $exclude";\n'
1549 +        """
1550 +        txt += '    tot=0;\n'
1551 +        txt += '    for file2 in '+str(allOutFiles)+' ; do\n'
1552 +        txt += '        tt=`ls -gGrta $file2 | awk \'{ print $3 }\';`\n'
1553 +        txt += '        tot=`expr $tot + $tt`;\n'
1554 +        txt += '        if [ $limit -lt $tot ]; then\n'
1555 +        txt += '            tot=`expr $tot - $tt`;\n'
1556 +        txt += '            fileLast=$file;\n'
1557 +        txt += '            break;\n'
1558 +        txt += '        fi\n'
1559 +        txt += '    done\n'
1560 +        txt += '    echo "Dimension calculated: $tot"; echo "First file to exclude: $file";\n'
1561 +        txt += '    flag=0;\n'    
1562 +        txt += '    for filess in '+str(allOutFiles)+' ; do\n'
1563 +        txt += '        if [ $fileLast = $filess ]; then\n'
1564 +        txt += '            flag=1;\n'
1565 +        txt += '        fi\n'
1566 +        txt += '        if [ $flag -eq 1 ]; then\n'
1567 +        txt += '            rm -f $filess;\n'
1568 +        txt += '        fi\n'
1569 +        txt += '    done\n'
1570 +        txt += '    ls -agGhrt;\n'
1571 +        txt += '    echo "WARNING: output files are too big in dimension: can not put in the output_sandbox.";\n'
1572 +        txt += '    echo "JOB_EXIT_STATUS = 70000";\n'
1573 +        txt += '    exit_status=70000;\n'
1574 +        txt += 'else'
1575 +        txt += '    echo "Total Output dimension $sum is fine.";\n'
1576 +        txt += 'fi\n'
1577 +        txt += 'echo "*****************************************"\n'
1578 +        txt += 'echo "*** Ending output sandbox limit check ***"\n'
1579 +        txt += 'echo "*****************************************"\n'
1580 +        return txt

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