2 |
|
from crab_logger import Logger |
3 |
|
from crab_exceptions import * |
4 |
|
from crab_util import * |
5 |
+ |
from BlackWhiteListParser import BlackWhiteListParser |
6 |
|
import common |
6 |
– |
import PsetManipulator |
7 |
– |
|
8 |
– |
import DBSInfo_EDM |
9 |
– |
#from DataDiscovery_EDM import DataDiscovery_EDM |
10 |
– |
import DataDiscovery_EDM |
11 |
– |
#from DataLocation_EDM import DataLocation_EDM |
12 |
– |
import DataLocation_EDM |
7 |
|
import Scram |
8 |
|
|
9 |
< |
import os, string, re |
9 |
> |
import os, string, glob |
10 |
|
|
11 |
|
class Cmssw(JobType): |
12 |
< |
def __init__(self, cfg_params): |
12 |
> |
def __init__(self, cfg_params, ncjobs): |
13 |
|
JobType.__init__(self, 'CMSSW') |
14 |
|
common.logger.debug(3,'CMSSW::__init__') |
15 |
|
|
22 |
– |
self.analisys_common_info = {} |
23 |
– |
# Marco. |
16 |
|
self._params = {} |
17 |
|
self.cfg_params = cfg_params |
18 |
|
|
19 |
+ |
# init BlackWhiteListParser |
20 |
+ |
self.blackWhiteListParser = BlackWhiteListParser(cfg_params) |
21 |
+ |
|
22 |
+ |
try: |
23 |
+ |
self.MaxTarBallSize = float(self.cfg_params['EDG.maxtarballsize']) |
24 |
+ |
except KeyError: |
25 |
+ |
self.MaxTarBallSize = 9.5 |
26 |
+ |
|
27 |
+ |
# number of jobs requested to be created, limit obj splitting |
28 |
+ |
self.ncjobs = ncjobs |
29 |
+ |
|
30 |
|
log = common.logger |
31 |
|
|
32 |
|
self.scram = Scram.Scram(cfg_params) |
30 |
– |
scramArea = '' |
33 |
|
self.additional_inbox_files = [] |
34 |
|
self.scriptExe = '' |
35 |
|
self.executable = '' |
36 |
+ |
self.executable_arch = self.scram.getArch() |
37 |
|
self.tgz_name = 'default.tgz' |
38 |
+ |
self.additional_tgz_name = 'additional.tgz' |
39 |
+ |
self.scriptName = 'CMSSW.sh' |
40 |
+ |
self.pset = '' #scrip use case Da |
41 |
+ |
self.datasetPath = '' #scrip use case Da |
42 |
|
|
43 |
+ |
# set FJR file name |
44 |
+ |
self.fjrFileName = 'crab_fjr.xml' |
45 |
|
|
46 |
|
self.version = self.scram.getSWVersion() |
47 |
< |
common.analisys_common_info['sw_version'] = self.version |
48 |
< |
### FEDE |
49 |
< |
common.analisys_common_info['copy_input_data'] = 0 |
50 |
< |
common.analisys_common_info['events_management'] = 1 |
47 |
> |
|
48 |
> |
# |
49 |
> |
# Try to block creation in case of arch/version mismatch |
50 |
> |
# |
51 |
> |
|
52 |
> |
a = string.split(self.version, "_") |
53 |
> |
|
54 |
> |
if int(a[1]) == 1 and (int(a[2]) < 5 and self.executable_arch.find('slc4') == 0): |
55 |
> |
msg = "Error: CMS does not support %s with %s architecture"%(self.version, self.executable_arch) |
56 |
> |
raise CrabException(msg) |
57 |
> |
if int(a[1]) == 1 and (int(a[2]) >= 5 and self.executable_arch.find('slc3') == 0): |
58 |
> |
msg = "Error: CMS does not support %s with %s architecture"%(self.version, self.executable_arch) |
59 |
> |
raise CrabException(msg) |
60 |
> |
|
61 |
> |
common.taskDB.setDict('codeVersion',self.version) |
62 |
> |
self.setParam_('application', self.version) |
63 |
|
|
64 |
|
### collect Data cards |
65 |
+ |
|
66 |
+ |
## get DBS mode |
67 |
|
try: |
68 |
< |
# self.owner = cfg_params['CMSSW.owner'] |
69 |
< |
# log.debug(6, "CMSSW::CMSSW(): owner = "+self.owner) |
70 |
< |
# self.dataset = cfg_params['CMSSW.dataset'] |
71 |
< |
self.datasetPath = cfg_params['CMSSW.datasetpath'] |
72 |
< |
log.debug(6, "CMSSW::CMSSW(): datasetPath = "+self.datasetPath) |
68 |
> |
self.use_dbs_1 = int(self.cfg_params['CMSSW.use_dbs_1']) |
69 |
> |
except KeyError: |
70 |
> |
self.use_dbs_1 = 0 |
71 |
> |
|
72 |
> |
try: |
73 |
> |
tmp = cfg_params['CMSSW.datasetpath'] |
74 |
> |
log.debug(6, "CMSSW::CMSSW(): datasetPath = "+tmp) |
75 |
> |
if string.lower(tmp)=='none': |
76 |
> |
self.datasetPath = None |
77 |
> |
self.selectNoInput = 1 |
78 |
> |
else: |
79 |
> |
self.datasetPath = tmp |
80 |
> |
self.selectNoInput = 0 |
81 |
|
except KeyError: |
51 |
– |
# msg = "Error: owner and/or dataset not defined " |
82 |
|
msg = "Error: datasetpath not defined " |
83 |
|
raise CrabException(msg) |
84 |
+ |
|
85 |
+ |
# ML monitoring |
86 |
+ |
# split dataset path style: /PreProdR3Minbias/SIM/GEN-SIM |
87 |
+ |
if not self.datasetPath: |
88 |
+ |
self.setParam_('dataset', 'None') |
89 |
+ |
self.setParam_('owner', 'None') |
90 |
+ |
else: |
91 |
+ |
try: |
92 |
+ |
datasetpath_split = self.datasetPath.split("/") |
93 |
+ |
# standard style |
94 |
+ |
self.setParam_('datasetFull', self.datasetPath) |
95 |
+ |
if self.use_dbs_1 == 1 : |
96 |
+ |
self.setParam_('dataset', datasetpath_split[1]) |
97 |
+ |
self.setParam_('owner', datasetpath_split[-1]) |
98 |
+ |
else: |
99 |
+ |
self.setParam_('dataset', datasetpath_split[1]) |
100 |
+ |
self.setParam_('owner', datasetpath_split[2]) |
101 |
+ |
except: |
102 |
+ |
self.setParam_('dataset', self.datasetPath) |
103 |
+ |
self.setParam_('owner', self.datasetPath) |
104 |
+ |
|
105 |
+ |
self.setTaskid_() |
106 |
+ |
self.setParam_('taskId', self.cfg_params['taskId']) |
107 |
+ |
|
108 |
|
self.dataTiers = [] |
55 |
– |
# try: |
56 |
– |
# tmpDataTiers = string.split(cfg_params['CMSSW.data_tier'],',') |
57 |
– |
# for tmp in tmpDataTiers: |
58 |
– |
# tmp=string.strip(tmp) |
59 |
– |
# self.dataTiers.append(tmp) |
60 |
– |
# pass |
61 |
– |
# pass |
62 |
– |
# except KeyError: |
63 |
– |
# pass |
64 |
– |
# log.debug(6, "Cmssw::Cmssw(): dataTiers = "+str(self.dataTiers)) |
109 |
|
|
110 |
|
## now the application |
111 |
|
try: |
112 |
|
self.executable = cfg_params['CMSSW.executable'] |
113 |
+ |
self.setParam_('exe', self.executable) |
114 |
|
log.debug(6, "CMSSW::CMSSW(): executable = "+self.executable) |
115 |
|
msg = "Default executable cmsRun overridden. Switch to " + self.executable |
116 |
|
log.debug(3,msg) |
117 |
|
except KeyError: |
118 |
|
self.executable = 'cmsRun' |
119 |
+ |
self.setParam_('exe', self.executable) |
120 |
|
msg = "User executable not defined. Use cmsRun" |
121 |
|
log.debug(3,msg) |
122 |
|
pass |
124 |
|
try: |
125 |
|
self.pset = cfg_params['CMSSW.pset'] |
126 |
|
log.debug(6, "Cmssw::Cmssw(): PSet file = "+self.pset) |
127 |
< |
if (not os.path.exists(self.pset)): |
128 |
< |
raise CrabException("User defined PSet file "+self.pset+" does not exist") |
127 |
> |
if self.pset.lower() != 'none' : |
128 |
> |
if (not os.path.exists(self.pset)): |
129 |
> |
raise CrabException("User defined PSet file "+self.pset+" does not exist") |
130 |
> |
else: |
131 |
> |
self.pset = None |
132 |
|
except KeyError: |
133 |
|
raise CrabException("PSet file missing. Cannot run cmsRun ") |
134 |
|
|
135 |
|
# output files |
136 |
+ |
## stuff which must be returned always via sandbox |
137 |
+ |
self.output_file_sandbox = [] |
138 |
+ |
|
139 |
+ |
# add fjr report by default via sandbox |
140 |
+ |
self.output_file_sandbox.append(self.fjrFileName) |
141 |
+ |
|
142 |
+ |
# other output files to be returned via sandbox or copied to SE |
143 |
|
try: |
144 |
|
self.output_file = [] |
89 |
– |
|
145 |
|
tmp = cfg_params['CMSSW.output_file'] |
146 |
|
if tmp != '': |
147 |
|
tmpOutFiles = string.split(cfg_params['CMSSW.output_file'],',') |
151 |
|
self.output_file.append(tmp) |
152 |
|
pass |
153 |
|
else: |
154 |
< |
log.message("No output file defined: only stdout/err will be available") |
154 |
> |
log.message("No output file defined: only stdout/err and the CRAB Framework Job Report will be available\n") |
155 |
|
pass |
156 |
|
pass |
157 |
|
except KeyError: |
158 |
< |
log.message("No output file defined: only stdout/err will be available") |
158 |
> |
log.message("No output file defined: only stdout/err and the CRAB Framework Job Report will be available\n") |
159 |
|
pass |
160 |
|
|
161 |
|
# script_exe file as additional file in inputSandbox |
162 |
|
try: |
163 |
< |
self.scriptExe = cfg_params['USER.script_exe'] |
164 |
< |
self.additional_inbox_files.append(self.scriptExe) |
163 |
> |
self.scriptExe = cfg_params['USER.script_exe'] |
164 |
> |
if self.scriptExe != '': |
165 |
> |
if not os.path.isfile(self.scriptExe): |
166 |
> |
msg ="ERROR. file "+self.scriptExe+" not found" |
167 |
> |
raise CrabException(msg) |
168 |
> |
self.additional_inbox_files.append(string.strip(self.scriptExe)) |
169 |
|
except KeyError: |
170 |
< |
pass |
171 |
< |
if self.scriptExe != '': |
172 |
< |
if os.path.isfile(self.scriptExe): |
173 |
< |
pass |
174 |
< |
else: |
175 |
< |
log.message("WARNING. file "+self.scriptExe+" not found") |
176 |
< |
sys.exit() |
118 |
< |
|
170 |
> |
self.scriptExe = '' |
171 |
> |
|
172 |
> |
#CarlosDaniele |
173 |
> |
if self.datasetPath == None and self.pset == None and self.scriptExe == '' : |
174 |
> |
msg ="Error. script_exe not defined" |
175 |
> |
raise CrabException(msg) |
176 |
> |
|
177 |
|
## additional input files |
178 |
|
try: |
179 |
< |
tmpAddFiles = string.split(cfg_params['CMSSW.additional_input_files'],',') |
179 |
> |
tmpAddFiles = string.split(cfg_params['USER.additional_input_files'],',') |
180 |
|
for tmp in tmpAddFiles: |
181 |
< |
if not os.path.exists(tmp): |
182 |
< |
raise CrabException("Additional input file not found: "+tmp) |
183 |
< |
tmp=string.strip(tmp) |
184 |
< |
self.additional_inbox_files.append(tmp) |
181 |
> |
tmp = string.strip(tmp) |
182 |
> |
dirname = '' |
183 |
> |
if not tmp[0]=="/": dirname = "." |
184 |
> |
files = [] |
185 |
> |
if string.find(tmp,"*")>-1: |
186 |
> |
files = glob.glob(os.path.join(dirname, tmp)) |
187 |
> |
if len(files)==0: |
188 |
> |
raise CrabException("No additional input file found with this pattern: "+tmp) |
189 |
> |
else: |
190 |
> |
files.append(tmp) |
191 |
> |
for file in files: |
192 |
> |
if not os.path.exists(file): |
193 |
> |
raise CrabException("Additional input file not found: "+file) |
194 |
> |
pass |
195 |
> |
# fname = string.split(file, '/')[-1] |
196 |
> |
# storedFile = common.work_space.pathForTgz()+'share/'+fname |
197 |
> |
# shutil.copyfile(file, storedFile) |
198 |
> |
self.additional_inbox_files.append(string.strip(file)) |
199 |
|
pass |
200 |
|
pass |
201 |
+ |
common.logger.debug(5,"Additional input files: "+str(self.additional_inbox_files)) |
202 |
|
except KeyError: |
203 |
|
pass |
204 |
|
|
205 |
+ |
# files per job |
206 |
|
try: |
207 |
< |
self.filesPerJob = int(cfg_params['CMSSW.files_per_jobs']) #Daniele |
207 |
> |
if (cfg_params['CMSSW.files_per_jobs']): |
208 |
> |
raise CrabException("files_per_jobs no longer supported. Quitting.") |
209 |
|
except KeyError: |
210 |
< |
self.filesPerJob = 1 |
210 |
> |
pass |
211 |
|
|
212 |
< |
## Max event will be total_number_of_events ??? Daniele |
212 |
> |
## Events per job |
213 |
> |
try: |
214 |
> |
self.eventsPerJob =int( cfg_params['CMSSW.events_per_job']) |
215 |
> |
self.selectEventsPerJob = 1 |
216 |
> |
except KeyError: |
217 |
> |
self.eventsPerJob = -1 |
218 |
> |
self.selectEventsPerJob = 0 |
219 |
> |
|
220 |
> |
## number of jobs |
221 |
|
try: |
222 |
< |
self.maxEv = cfg_params['CMSSW.event_per_job'] |
222 |
> |
self.theNumberOfJobs =int( cfg_params['CMSSW.number_of_jobs']) |
223 |
> |
self.selectNumberOfJobs = 1 |
224 |
|
except KeyError: |
225 |
< |
self.maxEv = "-1" |
226 |
< |
## |
225 |
> |
self.theNumberOfJobs = 0 |
226 |
> |
self.selectNumberOfJobs = 0 |
227 |
> |
|
228 |
|
try: |
229 |
|
self.total_number_of_events = int(cfg_params['CMSSW.total_number_of_events']) |
230 |
+ |
self.selectTotalNumberEvents = 1 |
231 |
|
except KeyError: |
232 |
< |
msg = 'Must define total_number_of_events' |
233 |
< |
raise CrabException(msg) |
234 |
< |
|
235 |
< |
CEBlackList = [] |
232 |
> |
self.total_number_of_events = 0 |
233 |
> |
self.selectTotalNumberEvents = 0 |
234 |
> |
|
235 |
> |
if self.pset != None: #CarlosDaniele |
236 |
> |
if ( (self.selectTotalNumberEvents + self.selectEventsPerJob + self.selectNumberOfJobs) != 2 ): |
237 |
> |
msg = 'Must define exactly two of total_number_of_events, events_per_job, or number_of_jobs.' |
238 |
> |
raise CrabException(msg) |
239 |
> |
else: |
240 |
> |
if (self.selectNumberOfJobs == 0): |
241 |
> |
msg = 'Must specify number_of_jobs.' |
242 |
> |
raise CrabException(msg) |
243 |
> |
|
244 |
> |
## source seed for pythia |
245 |
|
try: |
246 |
< |
tmpBad = string.split(cfg_params['EDG.ce_black_list'],',') |
152 |
< |
for tmp in tmpBad: |
153 |
< |
tmp=string.strip(tmp) |
154 |
< |
CEBlackList.append(tmp) |
246 |
> |
self.sourceSeed = int(cfg_params['CMSSW.pythia_seed']) |
247 |
|
except KeyError: |
248 |
< |
pass |
248 |
> |
self.sourceSeed = None |
249 |
> |
common.logger.debug(5,"No seed given") |
250 |
|
|
251 |
< |
self.reCEBlackList=[] |
252 |
< |
for bad in CEBlackList: |
160 |
< |
self.reCEBlackList.append(re.compile( bad )) |
161 |
< |
|
162 |
< |
common.logger.debug(5,'CEBlackList: '+str(CEBlackList)) |
163 |
< |
|
164 |
< |
CEWhiteList = [] |
165 |
< |
try: |
166 |
< |
tmpGood = string.split(cfg_params['EDG.ce_white_list'],',') |
167 |
< |
for tmp in tmpGood: |
168 |
< |
tmp=string.strip(tmp) |
169 |
< |
CEWhiteList.append(tmp) |
251 |
> |
try: |
252 |
> |
self.sourceSeedVtx = int(cfg_params['CMSSW.vtx_seed']) |
253 |
|
except KeyError: |
254 |
< |
pass |
254 |
> |
self.sourceSeedVtx = None |
255 |
> |
common.logger.debug(5,"No vertex seed given") |
256 |
|
|
257 |
< |
#print 'CEWhiteList: ',CEWhiteList |
258 |
< |
self.reCEWhiteList=[] |
259 |
< |
for Good in CEWhiteList: |
260 |
< |
self.reCEWhiteList.append(re.compile( Good )) |
257 |
> |
try: |
258 |
> |
self.sourceSeedG4 = int(cfg_params['CMSSW.g4_seed']) |
259 |
> |
except KeyError: |
260 |
> |
self.sourceSeedG4 = None |
261 |
> |
common.logger.debug(5,"No g4 sim hits seed given") |
262 |
|
|
263 |
< |
common.logger.debug(5,'CEWhiteList: '+str(CEWhiteList)) |
263 |
> |
try: |
264 |
> |
self.sourceSeedMix = int(cfg_params['CMSSW.mix_seed']) |
265 |
> |
except KeyError: |
266 |
> |
self.sourceSeedMix = None |
267 |
> |
common.logger.debug(5,"No mix seed given") |
268 |
|
|
269 |
< |
self.PsetEdit = PsetManipulator.PsetManipulator(self.pset) #Daniele Pset |
269 |
> |
try: |
270 |
> |
self.firstRun = int(cfg_params['CMSSW.first_run']) |
271 |
> |
except KeyError: |
272 |
> |
self.firstRun = None |
273 |
> |
common.logger.debug(5,"No first run given") |
274 |
> |
if self.pset != None: #CarlosDaniele |
275 |
> |
ver = string.split(self.version,"_") |
276 |
> |
if (int(ver[1])>=1 and int(ver[2])>=5): |
277 |
> |
import PsetManipulator150 as pp |
278 |
> |
else: |
279 |
> |
import PsetManipulator as pp |
280 |
> |
PsetEdit = pp.PsetManipulator(self.pset) #Daniele Pset |
281 |
|
|
282 |
|
#DBSDLS-start |
283 |
|
## Initialize the variables that are extracted from DBS/DLS and needed in other places of the code |
284 |
|
self.maxEvents=0 # max events available ( --> check the requested nb. of evts in Creator.py) |
285 |
|
self.DBSPaths={} # all dbs paths requested ( --> input to the site local discovery script) |
286 |
+ |
self.jobDestination=[] # Site destination(s) for each job (list of lists) |
287 |
|
## Perform the data location and discovery (based on DBS/DLS) |
288 |
< |
self.DataDiscoveryAndLocation(cfg_params) |
288 |
> |
## SL: Don't if NONE is specified as input (pythia use case) |
289 |
> |
blockSites = {} |
290 |
> |
if self.datasetPath: |
291 |
> |
blockSites = self.DataDiscoveryAndLocation(cfg_params) |
292 |
|
#DBSDLS-end |
293 |
|
|
294 |
|
self.tgzNameWithPath = self.getTarBall(self.executable) |
295 |
+ |
|
296 |
+ |
## Select Splitting |
297 |
+ |
if self.selectNoInput: |
298 |
+ |
if self.pset == None: #CarlosDaniele |
299 |
+ |
self.jobSplittingForScript() |
300 |
+ |
else: |
301 |
+ |
self.jobSplittingNoInput() |
302 |
+ |
else: |
303 |
+ |
self.jobSplittingByBlocks(blockSites) |
304 |
|
|
305 |
< |
self.jobSplitting() #Daniele job Splitting |
306 |
< |
self.PsetEdit.maxEvent(self.maxEv) #Daniele |
307 |
< |
self.PsetEdit.inputModule("INPUT") #Daniele |
308 |
< |
self.PsetEdit.psetWriter(self.configFilename()) |
305 |
> |
# modify Pset |
306 |
> |
if self.pset != None: #CarlosDaniele |
307 |
> |
try: |
308 |
> |
if (self.datasetPath): # standard job |
309 |
> |
# allow to processa a fraction of events in a file |
310 |
> |
PsetEdit.inputModule("INPUT") |
311 |
> |
PsetEdit.maxEvent("INPUTMAXEVENTS") |
312 |
> |
PsetEdit.skipEvent("INPUTSKIPEVENTS") |
313 |
> |
else: # pythia like job |
314 |
> |
PsetEdit.maxEvent(self.eventsPerJob) |
315 |
> |
if (self.firstRun): |
316 |
> |
PsetEdit.pythiaFirstRun("INPUTFIRSTRUN") #First Run |
317 |
> |
if (self.sourceSeed) : |
318 |
> |
PsetEdit.pythiaSeed("INPUT") |
319 |
> |
if (self.sourceSeedVtx) : |
320 |
> |
PsetEdit.vtxSeed("INPUTVTX") |
321 |
> |
if (self.sourceSeedG4) : |
322 |
> |
PsetEdit.g4Seed("INPUTG4") |
323 |
> |
if (self.sourceSeedMix) : |
324 |
> |
PsetEdit.mixSeed("INPUTMIX") |
325 |
> |
# add FrameworkJobReport to parameter-set |
326 |
> |
PsetEdit.addCrabFJR(self.fjrFileName) |
327 |
> |
PsetEdit.psetWriter(self.configFilename()) |
328 |
> |
except: |
329 |
> |
msg='Error while manipuliating ParameterSet: exiting...' |
330 |
> |
raise CrabException(msg) |
331 |
|
|
332 |
|
def DataDiscoveryAndLocation(self, cfg_params): |
333 |
|
|
334 |
+ |
import DataDiscovery |
335 |
+ |
import DataDiscovery_DBS2 |
336 |
+ |
import DataLocation |
337 |
|
common.logger.debug(10,"CMSSW::DataDiscoveryAndLocation()") |
338 |
|
|
201 |
– |
#datasetPath = "/"+self.owner+"/"+self.dataTiers[0]+"/"+self.dataset |
202 |
– |
|
339 |
|
datasetPath=self.datasetPath |
340 |
|
|
205 |
– |
## TODO |
206 |
– |
dataTiersList = "" |
207 |
– |
dataTiers = dataTiersList.split(',') |
208 |
– |
|
341 |
|
## Contact the DBS |
342 |
+ |
common.logger.message("Contacting Data Discovery Services ...") |
343 |
|
try: |
344 |
< |
self.pubdata=DataDiscovery_EDM.DataDiscovery_EDM(datasetPath, dataTiers, dataTiers) |
344 |
> |
|
345 |
> |
if self.use_dbs_1 == 1 : |
346 |
> |
self.pubdata=DataDiscovery.DataDiscovery(datasetPath, cfg_params) |
347 |
> |
else : |
348 |
> |
self.pubdata=DataDiscovery_DBS2.DataDiscovery_DBS2(datasetPath, cfg_params) |
349 |
|
self.pubdata.fetchDBSInfo() |
350 |
|
|
351 |
< |
except DataDiscovery_EDM.NotExistingDatasetError, ex : |
351 |
> |
except DataDiscovery.NotExistingDatasetError, ex : |
352 |
|
msg = 'ERROR ***: failed Data Discovery in DBS : %s'%ex.getErrorMessage() |
353 |
|
raise CrabException(msg) |
354 |
< |
|
355 |
< |
except DataDiscovery_EDM.NoDataTierinProvenanceError, ex : |
354 |
> |
except DataDiscovery.NoDataTierinProvenanceError, ex : |
355 |
> |
msg = 'ERROR ***: failed Data Discovery in DBS : %s'%ex.getErrorMessage() |
356 |
> |
raise CrabException(msg) |
357 |
> |
except DataDiscovery.DataDiscoveryError, ex: |
358 |
> |
msg = 'ERROR ***: failed Data Discovery in DBS : %s'%ex.getErrorMessage() |
359 |
> |
raise CrabException(msg) |
360 |
> |
except DataDiscovery_DBS2.NotExistingDatasetError_DBS2, ex : |
361 |
> |
msg = 'ERROR ***: failed Data Discovery in DBS : %s'%ex.getErrorMessage() |
362 |
> |
raise CrabException(msg) |
363 |
> |
except DataDiscovery_DBS2.NoDataTierinProvenanceError_DBS2, ex : |
364 |
|
msg = 'ERROR ***: failed Data Discovery in DBS : %s'%ex.getErrorMessage() |
365 |
|
raise CrabException(msg) |
366 |
< |
except DataDiscovery_EDM.DataDiscoveryError, ex: |
367 |
< |
msg = 'ERROR ***: failed Data Discovery in DBS %s'%ex.getErrorMessage() |
366 |
> |
except DataDiscovery_DBS2.DataDiscoveryError_DBS2, ex: |
367 |
> |
msg = 'ERROR ***: failed Data Discovery in DBS : %s'%ex.getErrorMessage() |
368 |
|
raise CrabException(msg) |
369 |
|
|
370 |
< |
## get list of all required data in the form of dbs paths (dbs path = /dataset/datatier/owner) |
371 |
< |
## self.DBSPaths=self.pubdata.getDBSPaths() |
372 |
< |
common.logger.message("Required data are :"+self.datasetPath) |
228 |
< |
|
229 |
< |
filesbyblock=self.pubdata.getFiles() |
230 |
< |
self.AllInputFiles=filesbyblock.values() |
231 |
< |
self.files = self.AllInputFiles |
232 |
< |
|
233 |
< |
## TEMP |
234 |
< |
# self.filesTmp = filesbyblock.values() |
235 |
< |
# self.files = [] |
236 |
< |
# locPath='rfio:cmsbose2.bo.infn.it:/flatfiles/SE00/cms/fanfani/ProdTest/' |
237 |
< |
# locPath='' |
238 |
< |
# tmp = [] |
239 |
< |
# for file in self.filesTmp[0]: |
240 |
< |
# tmp.append(locPath+file) |
241 |
< |
# self.files.append(tmp) |
242 |
< |
## END TEMP |
370 |
> |
self.filesbyblock=self.pubdata.getFiles() |
371 |
> |
self.eventsbyblock=self.pubdata.getEventsPerBlock() |
372 |
> |
self.eventsbyfile=self.pubdata.getEventsPerFile() |
373 |
|
|
374 |
|
## get max number of events |
245 |
– |
#common.logger.debug(10,"number of events for primary fileblocks %i"%self.pubdata.getMaxEvents()) |
375 |
|
self.maxEvents=self.pubdata.getMaxEvents() ## self.maxEvents used in Creator.py |
247 |
– |
common.logger.message("\nThe number of available events is %s"%self.maxEvents) |
376 |
|
|
377 |
|
## Contact the DLS and build a list of sites hosting the fileblocks |
378 |
|
try: |
379 |
< |
dataloc=DataLocation_EDM.DataLocation_EDM(filesbyblock.keys(),cfg_params) |
379 |
> |
dataloc=DataLocation.DataLocation(self.filesbyblock.keys(),cfg_params) |
380 |
|
dataloc.fetchDLSInfo() |
381 |
< |
except DataLocation_EDM.DataLocationError , ex: |
381 |
> |
except DataLocation.DataLocationError , ex: |
382 |
|
msg = 'ERROR ***: failed Data Location in DLS \n %s '%ex.getErrorMessage() |
383 |
|
raise CrabException(msg) |
384 |
|
|
257 |
– |
allsites=dataloc.getSites() |
258 |
– |
common.logger.debug(5,"sites are %s"%allsites) |
259 |
– |
sites=self.checkBlackList(allsites) |
260 |
– |
common.logger.debug(5,"sites are (after black list) %s"%sites) |
261 |
– |
sites=self.checkWhiteList(sites) |
262 |
– |
common.logger.debug(5,"sites are (after white list) %s"%sites) |
263 |
– |
|
264 |
– |
if len(sites)==0: |
265 |
– |
msg = 'No sites hosting all the needed data! Exiting... ' |
266 |
– |
raise CrabException(msg) |
385 |
|
|
386 |
< |
common.logger.message("List of Sites hosting the data : "+str(sites)) |
387 |
< |
common.logger.debug(6, "List of Sites: "+str(sites)) |
388 |
< |
common.analisys_common_info['sites']=sites ## used in SchedulerEdg.py in createSchScript |
389 |
< |
return |
386 |
> |
sites = dataloc.getSites() |
387 |
> |
allSites = [] |
388 |
> |
listSites = sites.values() |
389 |
> |
for listSite in listSites: |
390 |
> |
for oneSite in listSite: |
391 |
> |
allSites.append(oneSite) |
392 |
> |
allSites = self.uniquelist(allSites) |
393 |
> |
|
394 |
> |
# screen output |
395 |
> |
common.logger.message("Requested dataset: " + datasetPath + " has " + str(self.maxEvents) + " events in " + str(len(self.filesbyblock.keys())) + " blocks.\n") |
396 |
> |
|
397 |
> |
return sites |
398 |
|
|
399 |
< |
def jobSplitting(self): |
399 |
> |
def jobSplittingByBlocks(self, blockSites): |
400 |
|
""" |
401 |
< |
first implemntation for job splitting |
402 |
< |
""" |
403 |
< |
# print 'eventi totali '+str(self.maxEvents) |
404 |
< |
# print 'eventi totali richiesti dallo user '+str(self.total_number_of_events) |
405 |
< |
#print 'files per job '+str(self.filesPerJob) |
406 |
< |
common.logger.message('Required '+str(self.filesPerJob)+' files per job ') |
407 |
< |
common.logger.message('Required '+str(self.total_number_of_events)+' events in total ') |
408 |
< |
|
409 |
< |
## TODO: SL need to have (from DBS) a detailed list of how many events per each file |
410 |
< |
n_tot_files = (len(self.files[0])) |
411 |
< |
## SL: this is wrong if the files have different number of events |
412 |
< |
evPerFile = int(self.maxEvents)/n_tot_files |
413 |
< |
|
414 |
< |
common.logger.debug(5,'Events per File '+str(evPerFile)) |
415 |
< |
|
416 |
< |
## if asked to process all events, do it |
417 |
< |
if self.total_number_of_events == -1: |
418 |
< |
self.total_number_of_events=self.maxEvents |
419 |
< |
self.total_number_of_jobs = int(n_tot_files)*1/int(self.filesPerJob) |
420 |
< |
common.logger.message(str(self.total_number_of_jobs)+' jobs will be created for all available events '+str(self.total_number_of_events)+' events') |
421 |
< |
|
401 |
> |
Perform job splitting. Jobs run over an integer number of files |
402 |
> |
and no more than one block. |
403 |
> |
ARGUMENT: blockSites: dictionary with blocks as keys and list of host sites as values |
404 |
> |
REQUIRES: self.selectTotalNumberEvents, self.selectEventsPerJob, self.selectNumberofJobs, |
405 |
> |
self.total_number_of_events, self.eventsPerJob, self.theNumberOfJobs, |
406 |
> |
self.maxEvents, self.filesbyblock |
407 |
> |
SETS: self.jobDestination - Site destination(s) for each job (a list of lists) |
408 |
> |
self.total_number_of_jobs - Total # of jobs |
409 |
> |
self.list_of_args - File(s) job will run on (a list of lists) |
410 |
> |
""" |
411 |
> |
|
412 |
> |
# ---- Handle the possible job splitting configurations ---- # |
413 |
> |
if (self.selectTotalNumberEvents): |
414 |
> |
totalEventsRequested = self.total_number_of_events |
415 |
> |
if (self.selectEventsPerJob): |
416 |
> |
eventsPerJobRequested = self.eventsPerJob |
417 |
> |
if (self.selectNumberOfJobs): |
418 |
> |
totalEventsRequested = self.theNumberOfJobs * self.eventsPerJob |
419 |
> |
|
420 |
> |
# If user requested all the events in the dataset |
421 |
> |
if (totalEventsRequested == -1): |
422 |
> |
eventsRemaining=self.maxEvents |
423 |
> |
# If user requested more events than are in the dataset |
424 |
> |
elif (totalEventsRequested > self.maxEvents): |
425 |
> |
eventsRemaining = self.maxEvents |
426 |
> |
common.logger.message("Requested "+str(self.total_number_of_events)+ " events, but only "+str(self.maxEvents)+" events are available.") |
427 |
> |
# If user requested less events than are in the dataset |
428 |
|
else: |
429 |
< |
self.total_number_of_files = int(self.total_number_of_events/evPerFile) |
298 |
< |
## SL: if ask for less event than what is computed to be available on a |
299 |
< |
## file, process the first file anyhow. |
300 |
< |
if self.total_number_of_files == 0: |
301 |
< |
self.total_number_of_files = self.total_number_of_files + 1 |
429 |
> |
eventsRemaining = totalEventsRequested |
430 |
|
|
431 |
< |
common.logger.debug(5,'N files '+str(self.total_number_of_files)) |
431 |
> |
# If user requested more events per job than are in the dataset |
432 |
> |
if (self.selectEventsPerJob and eventsPerJobRequested > self.maxEvents): |
433 |
> |
eventsPerJobRequested = self.maxEvents |
434 |
|
|
435 |
< |
check = 0 |
435 |
> |
# For user info at end |
436 |
> |
totalEventCount = 0 |
437 |
> |
|
438 |
> |
if (self.selectTotalNumberEvents and self.selectNumberOfJobs): |
439 |
> |
eventsPerJobRequested = int(eventsRemaining/self.theNumberOfJobs) |
440 |
> |
|
441 |
> |
if (self.selectNumberOfJobs): |
442 |
> |
common.logger.message("May not create the exact number_of_jobs requested.") |
443 |
> |
|
444 |
> |
if ( self.ncjobs == 'all' ) : |
445 |
> |
totalNumberOfJobs = 999999999 |
446 |
> |
else : |
447 |
> |
totalNumberOfJobs = self.ncjobs |
448 |
|
|
307 |
– |
## Compute the number of jobs |
308 |
– |
#self.total_number_of_jobs = int(n_tot_files)*1/int(self.filesPerJob) |
309 |
– |
self.total_number_of_jobs = int(self.total_number_of_files/self.filesPerJob) |
310 |
– |
common.logger.debug(5,'N jobs '+str(self.total_number_of_jobs)) |
449 |
|
|
450 |
< |
## is there any remainder? |
451 |
< |
check = int(self.total_number_of_files) - (int(self.total_number_of_jobs)*self.filesPerJob) |
450 |
> |
blocks = blockSites.keys() |
451 |
> |
blockCount = 0 |
452 |
> |
# Backup variable in case self.maxEvents counted events in a non-included block |
453 |
> |
numBlocksInDataset = len(blocks) |
454 |
|
|
455 |
< |
common.logger.debug(5,'Check '+str(check)) |
455 |
> |
jobCount = 0 |
456 |
> |
list_of_lists = [] |
457 |
|
|
458 |
< |
if check > 0: |
459 |
< |
self.total_number_of_jobs = self.total_number_of_jobs + 1 |
319 |
< |
common.logger.message('Warning: last job will be created with '+str(check)+' files') |
458 |
> |
# list tracking which jobs are in which jobs belong to which block |
459 |
> |
jobsOfBlock = {} |
460 |
|
|
461 |
< |
common.logger.message(str(self.total_number_of_jobs)+' jobs will be created for a total of '+str((self.total_number_of_jobs-1)*self.filesPerJob*evPerFile + check*evPerFile)+' events') |
461 |
> |
# ---- Iterate over the blocks in the dataset until ---- # |
462 |
> |
# ---- we've met the requested total # of events ---- # |
463 |
> |
while ( (eventsRemaining > 0) and (blockCount < numBlocksInDataset) and (jobCount < totalNumberOfJobs)): |
464 |
> |
block = blocks[blockCount] |
465 |
> |
blockCount += 1 |
466 |
> |
if block not in jobsOfBlock.keys() : |
467 |
> |
jobsOfBlock[block] = [] |
468 |
> |
|
469 |
> |
if self.eventsbyblock.has_key(block) : |
470 |
> |
numEventsInBlock = self.eventsbyblock[block] |
471 |
> |
common.logger.debug(5,'Events in Block File '+str(numEventsInBlock)) |
472 |
> |
|
473 |
> |
files = self.filesbyblock[block] |
474 |
> |
numFilesInBlock = len(files) |
475 |
> |
if (numFilesInBlock <= 0): |
476 |
> |
continue |
477 |
> |
fileCount = 0 |
478 |
> |
|
479 |
> |
# ---- New block => New job ---- # |
480 |
> |
parString = "\\{" |
481 |
> |
# counter for number of events in files currently worked on |
482 |
> |
filesEventCount = 0 |
483 |
> |
# flag if next while loop should touch new file |
484 |
> |
newFile = 1 |
485 |
> |
# job event counter |
486 |
> |
jobSkipEventCount = 0 |
487 |
> |
|
488 |
> |
# ---- Iterate over the files in the block until we've met the requested ---- # |
489 |
> |
# ---- total # of events or we've gone over all the files in this block ---- # |
490 |
> |
while ( (eventsRemaining > 0) and (fileCount < numFilesInBlock) and (jobCount < totalNumberOfJobs) ): |
491 |
> |
file = files[fileCount] |
492 |
> |
if newFile : |
493 |
> |
try: |
494 |
> |
numEventsInFile = self.eventsbyfile[file] |
495 |
> |
common.logger.debug(6, "File "+str(file)+" has "+str(numEventsInFile)+" events") |
496 |
> |
# increase filesEventCount |
497 |
> |
filesEventCount += numEventsInFile |
498 |
> |
# Add file to current job |
499 |
> |
parString += '\\\"' + file + '\\\"\,' |
500 |
> |
newFile = 0 |
501 |
> |
except KeyError: |
502 |
> |
common.logger.message("File "+str(file)+" has unknown number of events: skipping") |
503 |
> |
|
504 |
> |
|
505 |
> |
# if less events in file remain than eventsPerJobRequested |
506 |
> |
if ( filesEventCount - jobSkipEventCount < eventsPerJobRequested ) : |
507 |
> |
# if last file in block |
508 |
> |
if ( fileCount == numFilesInBlock-1 ) : |
509 |
> |
# end job using last file, use remaining events in block |
510 |
> |
# close job and touch new file |
511 |
> |
fullString = parString[:-2] |
512 |
> |
fullString += '\\}' |
513 |
> |
list_of_lists.append([fullString,str(-1),str(jobSkipEventCount)]) |
514 |
> |
common.logger.debug(3,"Job "+str(jobCount+1)+" can run over "+str(filesEventCount - jobSkipEventCount)+" events (last file in block).") |
515 |
> |
self.jobDestination.append(blockSites[block]) |
516 |
> |
common.logger.debug(5,"Job "+str(jobCount+1)+" Destination: "+str(self.jobDestination[jobCount])) |
517 |
> |
# fill jobs of block dictionary |
518 |
> |
jobsOfBlock[block].append(jobCount+1) |
519 |
> |
# reset counter |
520 |
> |
jobCount = jobCount + 1 |
521 |
> |
totalEventCount = totalEventCount + filesEventCount - jobSkipEventCount |
522 |
> |
eventsRemaining = eventsRemaining - filesEventCount + jobSkipEventCount |
523 |
> |
jobSkipEventCount = 0 |
524 |
> |
# reset file |
525 |
> |
parString = "\\{" |
526 |
> |
filesEventCount = 0 |
527 |
> |
newFile = 1 |
528 |
> |
fileCount += 1 |
529 |
> |
else : |
530 |
> |
# go to next file |
531 |
> |
newFile = 1 |
532 |
> |
fileCount += 1 |
533 |
> |
# if events in file equal to eventsPerJobRequested |
534 |
> |
elif ( filesEventCount - jobSkipEventCount == eventsPerJobRequested ) : |
535 |
> |
# close job and touch new file |
536 |
> |
fullString = parString[:-2] |
537 |
> |
fullString += '\\}' |
538 |
> |
list_of_lists.append([fullString,str(eventsPerJobRequested),str(jobSkipEventCount)]) |
539 |
> |
common.logger.debug(3,"Job "+str(jobCount+1)+" can run over "+str(eventsPerJobRequested)+" events.") |
540 |
> |
self.jobDestination.append(blockSites[block]) |
541 |
> |
common.logger.debug(5,"Job "+str(jobCount+1)+" Destination: "+str(self.jobDestination[jobCount])) |
542 |
> |
jobsOfBlock[block].append(jobCount+1) |
543 |
> |
# reset counter |
544 |
> |
jobCount = jobCount + 1 |
545 |
> |
totalEventCount = totalEventCount + eventsPerJobRequested |
546 |
> |
eventsRemaining = eventsRemaining - eventsPerJobRequested |
547 |
> |
jobSkipEventCount = 0 |
548 |
> |
# reset file |
549 |
> |
parString = "\\{" |
550 |
> |
filesEventCount = 0 |
551 |
> |
newFile = 1 |
552 |
> |
fileCount += 1 |
553 |
> |
|
554 |
> |
# if more events in file remain than eventsPerJobRequested |
555 |
> |
else : |
556 |
> |
# close job but don't touch new file |
557 |
> |
fullString = parString[:-2] |
558 |
> |
fullString += '\\}' |
559 |
> |
list_of_lists.append([fullString,str(eventsPerJobRequested),str(jobSkipEventCount)]) |
560 |
> |
common.logger.debug(3,"Job "+str(jobCount+1)+" can run over "+str(eventsPerJobRequested)+" events.") |
561 |
> |
self.jobDestination.append(blockSites[block]) |
562 |
> |
common.logger.debug(5,"Job "+str(jobCount+1)+" Destination: "+str(self.jobDestination[jobCount])) |
563 |
> |
jobsOfBlock[block].append(jobCount+1) |
564 |
> |
# increase counter |
565 |
> |
jobCount = jobCount + 1 |
566 |
> |
totalEventCount = totalEventCount + eventsPerJobRequested |
567 |
> |
eventsRemaining = eventsRemaining - eventsPerJobRequested |
568 |
> |
# calculate skip events for last file |
569 |
> |
# use filesEventCount (contains several files), jobSkipEventCount and eventsPerJobRequest |
570 |
> |
jobSkipEventCount = eventsPerJobRequested - (filesEventCount - jobSkipEventCount - self.eventsbyfile[file]) |
571 |
> |
# remove all but the last file |
572 |
> |
filesEventCount = self.eventsbyfile[file] |
573 |
> |
parString = "\\{" |
574 |
> |
parString += '\\\"' + file + '\\\"\,' |
575 |
> |
pass # END if |
576 |
> |
pass # END while (iterate over files in the block) |
577 |
> |
pass # END while (iterate over blocks in the dataset) |
578 |
> |
self.ncjobs = self.total_number_of_jobs = jobCount |
579 |
> |
if (eventsRemaining > 0 and jobCount < totalNumberOfJobs ): |
580 |
> |
common.logger.message("Could not run on all requested events because some blocks not hosted at allowed sites.") |
581 |
> |
common.logger.message(str(jobCount)+" job(s) can run on "+str(totalEventCount)+" events.\n") |
582 |
> |
|
583 |
> |
# screen output |
584 |
> |
screenOutput = "List of jobs and available destination sites:\n\n" |
585 |
> |
|
586 |
> |
# keep trace of block with no sites to print a warning at the end |
587 |
> |
noSiteBlock = [] |
588 |
> |
bloskNoSite = [] |
589 |
> |
|
590 |
> |
blockCounter = 0 |
591 |
> |
for block in blocks: |
592 |
> |
if block in jobsOfBlock.keys() : |
593 |
> |
blockCounter += 1 |
594 |
> |
screenOutput += "Block %5i: jobs %20s: sites: %s\n" % (blockCounter,spanRanges(jobsOfBlock[block]),','.join(self.blackWhiteListParser.checkWhiteList(self.blackWhiteListParser.checkBlackList(blockSites[block],block),block))) |
595 |
> |
if len(self.blackWhiteListParser.checkWhiteList(self.blackWhiteListParser.checkBlackList(blockSites[block],block),block)) == 0: |
596 |
> |
noSiteBlock.append( spanRanges(jobsOfBlock[block]) ) |
597 |
> |
bloskNoSite.append( blockCounter ) |
598 |
> |
|
599 |
> |
common.logger.message(screenOutput) |
600 |
> |
if len(noSiteBlock) > 0 and len(bloskNoSite) > 0: |
601 |
> |
msg = 'WARNING: No sites are hosting any part of data for block:\n ' |
602 |
> |
virgola = "" |
603 |
> |
if len(bloskNoSite) > 1: |
604 |
> |
virgola = "," |
605 |
> |
for block in bloskNoSite: |
606 |
> |
msg += ' ' + str(block) + virgola |
607 |
> |
msg += '\n Related jobs:\n ' |
608 |
> |
virgola = "" |
609 |
> |
if len(noSiteBlock) > 1: |
610 |
> |
virgola = "," |
611 |
> |
for range_jobs in noSiteBlock: |
612 |
> |
msg += str(range_jobs) + virgola |
613 |
> |
msg += '\n will not be submitted and this block of data can not be analyzed!\n' |
614 |
> |
common.logger.message(msg) |
615 |
> |
|
616 |
> |
self.list_of_args = list_of_lists |
617 |
> |
return |
618 |
> |
|
619 |
> |
def jobSplittingNoInput(self): |
620 |
> |
""" |
621 |
> |
Perform job splitting based on number of event per job |
622 |
> |
""" |
623 |
> |
common.logger.debug(5,'Splitting per events') |
624 |
> |
common.logger.message('Required '+str(self.eventsPerJob)+' events per job ') |
625 |
> |
common.logger.message('Required '+str(self.theNumberOfJobs)+' jobs in total ') |
626 |
> |
common.logger.message('Required '+str(self.total_number_of_events)+' events in total ') |
627 |
> |
|
628 |
> |
if (self.total_number_of_events < 0): |
629 |
> |
msg='Cannot split jobs per Events with "-1" as total number of events' |
630 |
> |
raise CrabException(msg) |
631 |
> |
|
632 |
> |
if (self.selectEventsPerJob): |
633 |
> |
if (self.selectTotalNumberEvents): |
634 |
> |
self.total_number_of_jobs = int(self.total_number_of_events/self.eventsPerJob) |
635 |
> |
elif(self.selectNumberOfJobs) : |
636 |
> |
self.total_number_of_jobs =self.theNumberOfJobs |
637 |
> |
self.total_number_of_events =int(self.theNumberOfJobs*self.eventsPerJob) |
638 |
> |
|
639 |
> |
elif (self.selectNumberOfJobs) : |
640 |
> |
self.total_number_of_jobs = self.theNumberOfJobs |
641 |
> |
self.eventsPerJob = int(self.total_number_of_events/self.total_number_of_jobs) |
642 |
> |
|
643 |
> |
common.logger.debug(5,'N jobs '+str(self.total_number_of_jobs)) |
644 |
> |
|
645 |
> |
# is there any remainder? |
646 |
> |
check = int(self.total_number_of_events) - (int(self.total_number_of_jobs)*self.eventsPerJob) |
647 |
> |
|
648 |
> |
common.logger.debug(5,'Check '+str(check)) |
649 |
> |
|
650 |
> |
common.logger.message(str(self.total_number_of_jobs)+' jobs can be created, each for '+str(self.eventsPerJob)+' for a total of '+str(self.total_number_of_jobs*self.eventsPerJob)+' events') |
651 |
> |
if check > 0: |
652 |
> |
common.logger.message('Warning: asked '+str(self.total_number_of_events)+' but can do only '+str(int(self.total_number_of_jobs)*self.eventsPerJob)) |
653 |
> |
|
654 |
> |
# argument is seed number.$i |
655 |
> |
self.list_of_args = [] |
656 |
> |
for i in range(self.total_number_of_jobs): |
657 |
> |
## Since there is no input, any site is good |
658 |
> |
# self.jobDestination.append(["Any"]) |
659 |
> |
self.jobDestination.append([""]) #must be empty to write correctly the xml |
660 |
> |
args=[] |
661 |
> |
if (self.firstRun): |
662 |
> |
## pythia first run |
663 |
> |
#self.list_of_args.append([(str(self.firstRun)+str(i))]) |
664 |
> |
args.append(str(self.firstRun)+str(i)) |
665 |
> |
else: |
666 |
> |
## no first run |
667 |
> |
#self.list_of_args.append([str(i)]) |
668 |
> |
args.append(str(i)) |
669 |
> |
if (self.sourceSeed): |
670 |
> |
args.append(str(self.sourceSeed)+str(i)) |
671 |
> |
if (self.sourceSeedVtx): |
672 |
> |
## + vtx random seed |
673 |
> |
args.append(str(self.sourceSeedVtx)+str(i)) |
674 |
> |
if (self.sourceSeedG4): |
675 |
> |
## + G4 random seed |
676 |
> |
args.append(str(self.sourceSeedG4)+str(i)) |
677 |
> |
if (self.sourceSeedMix): |
678 |
> |
## + Mix random seed |
679 |
> |
args.append(str(self.sourceSeedMix)+str(i)) |
680 |
> |
pass |
681 |
|
pass |
682 |
+ |
self.list_of_args.append(args) |
683 |
+ |
pass |
684 |
+ |
|
685 |
+ |
# print self.list_of_args |
686 |
|
|
687 |
< |
list_of_lists = [] |
325 |
< |
for i in xrange(0, int(n_tot_files), self.filesPerJob): |
326 |
< |
list_of_lists.append(self.files[0][i: i+self.filesPerJob]) |
687 |
> |
return |
688 |
|
|
689 |
< |
self.list_of_files = list_of_lists |
690 |
< |
|
689 |
> |
|
690 |
> |
def jobSplittingForScript(self):#CarlosDaniele |
691 |
> |
""" |
692 |
> |
Perform job splitting based on number of job |
693 |
> |
""" |
694 |
> |
common.logger.debug(5,'Splitting per job') |
695 |
> |
common.logger.message('Required '+str(self.theNumberOfJobs)+' jobs in total ') |
696 |
> |
|
697 |
> |
self.total_number_of_jobs = self.theNumberOfJobs |
698 |
> |
|
699 |
> |
common.logger.debug(5,'N jobs '+str(self.total_number_of_jobs)) |
700 |
> |
|
701 |
> |
common.logger.message(str(self.total_number_of_jobs)+' jobs can be created') |
702 |
> |
|
703 |
> |
# argument is seed number.$i |
704 |
> |
self.list_of_args = [] |
705 |
> |
for i in range(self.total_number_of_jobs): |
706 |
> |
## Since there is no input, any site is good |
707 |
> |
# self.jobDestination.append(["Any"]) |
708 |
> |
self.jobDestination.append([""]) |
709 |
> |
## no random seed |
710 |
> |
self.list_of_args.append([str(i)]) |
711 |
|
return |
712 |
|
|
713 |
|
def split(self, jobParams): |
715 |
|
common.jobDB.load() |
716 |
|
#### Fabio |
717 |
|
njobs = self.total_number_of_jobs |
718 |
< |
filelist = self.list_of_files |
718 |
> |
arglist = self.list_of_args |
719 |
|
# create the empty structure |
720 |
|
for i in range(njobs): |
721 |
|
jobParams.append("") |
722 |
|
|
723 |
|
for job in range(njobs): |
724 |
< |
jobParams[job] = filelist[job] |
724 |
> |
jobParams[job] = arglist[job] |
725 |
> |
# print str(arglist[job]) |
726 |
> |
# print jobParams[job] |
727 |
|
common.jobDB.setArguments(job, jobParams[job]) |
728 |
+ |
common.logger.debug(5,"Job "+str(job)+" Destination: "+str(self.jobDestination[job])) |
729 |
+ |
common.jobDB.setDestination(job, self.jobDestination[job]) |
730 |
|
|
731 |
|
common.jobDB.save() |
732 |
|
return |
733 |
|
|
734 |
|
def getJobTypeArguments(self, nj, sched): |
735 |
< |
params = common.jobDB.arguments(nj) |
736 |
< |
#print params |
737 |
< |
parString = "\\{" |
738 |
< |
|
354 |
< |
for i in range(len(params) - 1): |
355 |
< |
parString += '\\\"' + params[i] + '\\\"\,' |
356 |
< |
|
357 |
< |
parString += '\\\"' + params[len(params) - 1] + '\\\"\\}' |
358 |
< |
return parString |
735 |
> |
result = '' |
736 |
> |
for i in common.jobDB.arguments(nj): |
737 |
> |
result=result+str(i)+" " |
738 |
> |
return result |
739 |
|
|
740 |
|
def numberOfJobs(self): |
741 |
|
# Fabio |
362 |
– |
|
742 |
|
return self.total_number_of_jobs |
364 |
– |
|
365 |
– |
|
366 |
– |
|
367 |
– |
def checkBlackList(self, allSites): |
368 |
– |
if len(self.reCEBlackList)==0: return allSites |
369 |
– |
sites = [] |
370 |
– |
for site in allSites: |
371 |
– |
common.logger.debug(10,'Site '+site) |
372 |
– |
good=1 |
373 |
– |
for re in self.reCEBlackList: |
374 |
– |
if re.search(site): |
375 |
– |
common.logger.message('CE in black list, skipping site '+site) |
376 |
– |
good=0 |
377 |
– |
pass |
378 |
– |
if good: sites.append(site) |
379 |
– |
if len(sites) == 0: |
380 |
– |
common.logger.debug(3,"No sites found after BlackList") |
381 |
– |
return sites |
382 |
– |
|
383 |
– |
def checkWhiteList(self, allSites): |
384 |
– |
|
385 |
– |
if len(self.reCEWhiteList)==0: return allSites |
386 |
– |
sites = [] |
387 |
– |
for site in allSites: |
388 |
– |
good=0 |
389 |
– |
for re in self.reCEWhiteList: |
390 |
– |
if re.search(site): |
391 |
– |
common.logger.debug(5,'CE in white list, adding site '+site) |
392 |
– |
good=1 |
393 |
– |
if not good: continue |
394 |
– |
sites.append(site) |
395 |
– |
if len(sites) == 0: |
396 |
– |
common.logger.message("No sites found after WhiteList\n") |
397 |
– |
else: |
398 |
– |
common.logger.debug(5,"Selected sites via WhiteList are "+str(sites)+"\n") |
399 |
– |
return sites |
743 |
|
|
744 |
|
def getTarBall(self, exe): |
745 |
|
""" |
747 |
|
""" |
748 |
|
|
749 |
|
# if it exist, just return it |
750 |
< |
self.tgzNameWithPath = common.work_space.shareDir()+self.tgz_name |
750 |
> |
# |
751 |
> |
# Marco. Let's start to use relative path for Boss XML files |
752 |
> |
# |
753 |
> |
self.tgzNameWithPath = common.work_space.pathForTgz()+'share/'+self.tgz_name |
754 |
|
if os.path.exists(self.tgzNameWithPath): |
755 |
|
return self.tgzNameWithPath |
756 |
|
|
764 |
|
# First of all declare the user Scram area |
765 |
|
swArea = self.scram.getSWArea_() |
766 |
|
#print "swArea = ", swArea |
767 |
< |
swVersion = self.scram.getSWVersion() |
768 |
< |
#print "swVersion = ", swVersion |
767 |
> |
# swVersion = self.scram.getSWVersion() |
768 |
> |
# print "swVersion = ", swVersion |
769 |
|
swReleaseTop = self.scram.getReleaseTop_() |
770 |
|
#print "swReleaseTop = ", swReleaseTop |
771 |
|
|
773 |
|
if swReleaseTop == '' or swArea == swReleaseTop: |
774 |
|
return |
775 |
|
|
776 |
< |
filesToBeTarred = [] |
777 |
< |
## First find the executable |
778 |
< |
if (self.executable != ''): |
779 |
< |
exeWithPath = self.scram.findFile_(executable) |
780 |
< |
# print exeWithPath |
781 |
< |
if ( not exeWithPath ): |
782 |
< |
raise CrabException('User executable '+executable+' not found') |
783 |
< |
|
784 |
< |
## then check if it's private or not |
785 |
< |
if exeWithPath.find(swReleaseTop) == -1: |
786 |
< |
# the exe is private, so we must ship |
787 |
< |
common.logger.debug(5,"Exe "+exeWithPath+" to be tarred") |
788 |
< |
path = swArea+'/' |
789 |
< |
exe = string.replace(exeWithPath, path,'') |
790 |
< |
filesToBeTarred.append(exe) |
791 |
< |
pass |
792 |
< |
else: |
793 |
< |
# the exe is from release, we'll find it on WN |
794 |
< |
pass |
795 |
< |
|
796 |
< |
## Now get the libraries: only those in local working area |
797 |
< |
libDir = 'lib' |
798 |
< |
lib = swArea+'/' +libDir |
799 |
< |
common.logger.debug(5,"lib "+lib+" to be tarred") |
800 |
< |
if os.path.exists(lib): |
801 |
< |
filesToBeTarred.append(libDir) |
802 |
< |
|
803 |
< |
## Now check if module dir is present |
804 |
< |
moduleDir = 'module' |
805 |
< |
if os.path.isdir(swArea+'/'+moduleDir): |
806 |
< |
filesToBeTarred.append(moduleDir) |
807 |
< |
|
808 |
< |
## Now check if the Data dir is present |
809 |
< |
dataDir = 'src/Data/' |
810 |
< |
if os.path.isdir(swArea+'/'+dataDir): |
811 |
< |
filesToBeTarred.append(dataDir) |
812 |
< |
|
813 |
< |
## Create the tar-ball |
814 |
< |
if len(filesToBeTarred)>0: |
815 |
< |
cwd = os.getcwd() |
816 |
< |
os.chdir(swArea) |
817 |
< |
tarcmd = 'tar zcvf ' + self.tgzNameWithPath + ' ' |
818 |
< |
for line in filesToBeTarred: |
819 |
< |
tarcmd = tarcmd + line + ' ' |
820 |
< |
cout = runCommand(tarcmd) |
821 |
< |
if not cout: |
822 |
< |
raise CrabException('Could not create tar-ball') |
823 |
< |
os.chdir(cwd) |
824 |
< |
else: |
825 |
< |
common.logger.debug(5,"No files to be to be tarred") |
776 |
> |
import tarfile |
777 |
> |
try: # create tar ball |
778 |
> |
tar = tarfile.open(self.tgzNameWithPath, "w:gz") |
779 |
> |
## First find the executable |
780 |
> |
if (self.executable != ''): |
781 |
> |
exeWithPath = self.scram.findFile_(executable) |
782 |
> |
if ( not exeWithPath ): |
783 |
> |
raise CrabException('User executable '+executable+' not found') |
784 |
> |
|
785 |
> |
## then check if it's private or not |
786 |
> |
if exeWithPath.find(swReleaseTop) == -1: |
787 |
> |
# the exe is private, so we must ship |
788 |
> |
common.logger.debug(5,"Exe "+exeWithPath+" to be tarred") |
789 |
> |
path = swArea+'/' |
790 |
> |
# distinguish case when script is in user project area or given by full path somewhere else |
791 |
> |
if exeWithPath.find(path) >= 0 : |
792 |
> |
exe = string.replace(exeWithPath, path,'') |
793 |
> |
tar.add(path+exe,os.path.basename(executable)) |
794 |
> |
else : |
795 |
> |
tar.add(exeWithPath,os.path.basename(executable)) |
796 |
> |
pass |
797 |
> |
else: |
798 |
> |
# the exe is from release, we'll find it on WN |
799 |
> |
pass |
800 |
> |
|
801 |
> |
## Now get the libraries: only those in local working area |
802 |
> |
libDir = 'lib' |
803 |
> |
lib = swArea+'/' +libDir |
804 |
> |
common.logger.debug(5,"lib "+lib+" to be tarred") |
805 |
> |
if os.path.exists(lib): |
806 |
> |
tar.add(lib,libDir) |
807 |
> |
|
808 |
> |
## Now check if module dir is present |
809 |
> |
moduleDir = 'module' |
810 |
> |
module = swArea + '/' + moduleDir |
811 |
> |
if os.path.isdir(module): |
812 |
> |
tar.add(module,moduleDir) |
813 |
> |
|
814 |
> |
## Now check if any data dir(s) is present |
815 |
> |
swAreaLen=len(swArea) |
816 |
> |
for root, dirs, files in os.walk(swArea): |
817 |
> |
if "data" in dirs: |
818 |
> |
common.logger.debug(5,"data "+root+"/data"+" to be tarred") |
819 |
> |
tar.add(root+"/data",root[swAreaLen:]+"/data") |
820 |
> |
|
821 |
> |
## Add ProdAgent dir to tar |
822 |
> |
paDir = 'ProdAgentApi' |
823 |
> |
pa = os.environ['CRABDIR'] + '/' + 'ProdAgentApi' |
824 |
> |
if os.path.isdir(pa): |
825 |
> |
tar.add(pa,paDir) |
826 |
> |
|
827 |
> |
### FEDE FOR DBS PUBLICATION |
828 |
> |
## Add PRODCOMMON dir to tar |
829 |
> |
prodcommonDir = 'ProdCommon' |
830 |
> |
prodcommonPath = os.environ['CRABDIR'] + '/' + 'ProdCommon' |
831 |
> |
if os.path.isdir(prodcommonPath): |
832 |
> |
tar.add(prodcommonPath,prodcommonDir) |
833 |
> |
############################# |
834 |
> |
|
835 |
> |
common.logger.debug(5,"Files added to "+self.tgzNameWithPath+" : "+str(tar.getnames())) |
836 |
> |
tar.close() |
837 |
> |
except : |
838 |
> |
raise CrabException('Could not create tar-ball') |
839 |
> |
|
840 |
> |
## check for tarball size |
841 |
> |
tarballinfo = os.stat(self.tgzNameWithPath) |
842 |
> |
if ( tarballinfo.st_size > self.MaxTarBallSize*1024*1024 ) : |
843 |
> |
raise CrabException('Input sandbox size of ' + str(float(tarballinfo.st_size)/1024.0/1024.0) + ' MB is larger than the allowed ' + str(self.MaxTarBallSize) + ' MB input sandbox limit and not supported by the used GRID submission system. Please make sure that no unnecessary files are in all data directories in your local CMSSW project area as they are automatically packed into the input sandbox.') |
844 |
> |
|
845 |
> |
## create tar-ball with ML stuff |
846 |
> |
self.MLtgzfile = common.work_space.pathForTgz()+'share/MLfiles.tgz' |
847 |
> |
try: |
848 |
> |
tar = tarfile.open(self.MLtgzfile, "w:gz") |
849 |
> |
path=os.environ['CRABDIR'] + '/python/' |
850 |
> |
for file in ['report.py', 'DashboardAPI.py', 'Logger.py', 'ProcInfo.py', 'apmon.py', 'parseCrabFjr.py']: |
851 |
> |
tar.add(path+file,file) |
852 |
> |
common.logger.debug(5,"Files added to "+self.MLtgzfile+" : "+str(tar.getnames())) |
853 |
> |
tar.close() |
854 |
> |
except : |
855 |
> |
raise CrabException('Could not create ML files tar-ball') |
856 |
|
|
857 |
|
return |
858 |
|
|
859 |
+ |
def additionalInputFileTgz(self): |
860 |
+ |
""" |
861 |
+ |
Put all additional files into a tar ball and return its name |
862 |
+ |
""" |
863 |
+ |
import tarfile |
864 |
+ |
tarName= common.work_space.pathForTgz()+'share/'+self.additional_tgz_name |
865 |
+ |
tar = tarfile.open(tarName, "w:gz") |
866 |
+ |
for file in self.additional_inbox_files: |
867 |
+ |
tar.add(file,string.split(file,'/')[-1]) |
868 |
+ |
common.logger.debug(5,"Files added to "+self.additional_tgz_name+" : "+str(tar.getnames())) |
869 |
+ |
tar.close() |
870 |
+ |
return tarName |
871 |
+ |
|
872 |
|
def wsSetupEnvironment(self, nj): |
873 |
|
""" |
874 |
|
Returns part of a job script which prepares |
880 |
|
## OLI_Daniele at this level middleware already known |
881 |
|
|
882 |
|
txt += 'if [ $middleware == LCG ]; then \n' |
883 |
+ |
txt += ' echo "### First set SCRAM ARCH and BUILD_ARCH to ' + self.executable_arch + ' ###"\n' |
884 |
+ |
txt += ' export SCRAM_ARCH='+self.executable_arch+'\n' |
885 |
+ |
txt += ' export BUILD_ARCH='+self.executable_arch+'\n' |
886 |
|
txt += self.wsSetupCMSLCGEnvironment_() |
887 |
|
txt += 'elif [ $middleware == OSG ]; then\n' |
888 |
< |
txt += ' time=`date -u +"%s"`\n' |
889 |
< |
txt += ' WORKING_DIR=$OSG_WN_TMP/cms_$time\n' |
498 |
< |
txt += ' echo "Creating working directory: $WORKING_DIR"\n' |
499 |
< |
txt += ' /bin/mkdir -p $WORKING_DIR\n' |
888 |
> |
txt += ' WORKING_DIR=`/bin/mktemp -d $OSG_WN_TMP/cms_XXXXXXXXXXXX`\n' |
889 |
> |
txt += ' echo "Created working directory: $WORKING_DIR"\n' |
890 |
|
txt += ' if [ ! -d $WORKING_DIR ] ;then\n' |
891 |
< |
txt += ' echo "OSG WORKING DIR ==> $WORKING_DIR could not be created on on WN `hostname`"\n' |
892 |
< |
|
893 |
< |
txt += ' echo "JOB_EXIT_STATUS = 1"\n' |
891 |
> |
txt += ' echo "SET_CMS_ENV 10016 ==> OSG $WORKING_DIR could not be created on WN `hostname`"\n' |
892 |
> |
txt += ' echo "JOB_EXIT_STATUS = 10016"\n' |
893 |
> |
txt += ' echo "JobExitCode=10016" | tee -a $RUNTIME_AREA/$repo\n' |
894 |
> |
txt += ' dumpStatus $RUNTIME_AREA/$repo\n' |
895 |
> |
txt += ' rm -f $RUNTIME_AREA/$repo \n' |
896 |
> |
txt += ' echo "MonitorJobID=`echo $MonitorJobID`" | tee -a $RUNTIME_AREA/$repo \n' |
897 |
> |
txt += ' echo "MonitorID=`echo $MonitorID`" | tee -a $RUNTIME_AREA/$repo\n' |
898 |
|
txt += ' exit 1\n' |
899 |
|
txt += ' fi\n' |
900 |
|
txt += '\n' |
901 |
|
txt += ' echo "Change to working directory: $WORKING_DIR"\n' |
902 |
|
txt += ' cd $WORKING_DIR\n' |
903 |
|
txt += self.wsSetupCMSOSGEnvironment_() |
904 |
+ |
txt += ' echo "### Set SCRAM ARCH to ' + self.executable_arch + ' ###"\n' |
905 |
+ |
txt += ' export SCRAM_ARCH='+self.executable_arch+'\n' |
906 |
|
txt += 'fi\n' |
907 |
|
|
908 |
|
# Prepare JobType-specific part |
912 |
|
txt += scram+' project CMSSW '+self.version+'\n' |
913 |
|
txt += 'status=$?\n' |
914 |
|
txt += 'if [ $status != 0 ] ; then\n' |
915 |
< |
txt += ' echo "SET_EXE_ENV 1 ==>ERROR CMSSW '+self.version+' not found on `hostname`" \n' |
915 |
> |
txt += ' echo "SET_EXE_ENV 10034 ==>ERROR CMSSW '+self.version+' not found on `hostname`" \n' |
916 |
|
txt += ' echo "JOB_EXIT_STATUS = 10034"\n' |
917 |
< |
txt += ' echo "SanityCheckCode = 10034" | tee -a $RUNTIME_AREA/$repo\n' |
917 |
> |
txt += ' echo "JobExitCode=10034" | tee -a $RUNTIME_AREA/$repo\n' |
918 |
|
txt += ' dumpStatus $RUNTIME_AREA/$repo\n' |
919 |
+ |
txt += ' rm -f $RUNTIME_AREA/$repo \n' |
920 |
+ |
txt += ' echo "MonitorJobID=`echo $MonitorJobID`" | tee -a $RUNTIME_AREA/$repo \n' |
921 |
+ |
txt += ' echo "MonitorID=`echo $MonitorID`" | tee -a $RUNTIME_AREA/$repo\n' |
922 |
|
## OLI_Daniele |
923 |
|
txt += ' if [ $middleware == OSG ]; then \n' |
924 |
|
txt += ' echo "Remove working directory: $WORKING_DIR"\n' |
925 |
|
txt += ' cd $RUNTIME_AREA\n' |
926 |
|
txt += ' /bin/rm -rf $WORKING_DIR\n' |
927 |
|
txt += ' if [ -d $WORKING_DIR ] ;then\n' |
928 |
< |
txt += ' echo "OSG WORKING DIR ==> $WORKING_DIR could not be deleted on on WN `hostname`"\n' |
928 |
> |
txt += ' echo "SET_CMS_ENV 10018 ==> OSG $WORKING_DIR could not be deleted on WN `hostname` after CMSSW CMSSW_0_6_1 not found on `hostname`"\n' |
929 |
> |
txt += ' echo "JOB_EXIT_STATUS = 10018"\n' |
930 |
> |
txt += ' echo "JobExitCode=10018" | tee -a $RUNTIME_AREA/$repo\n' |
931 |
> |
txt += ' dumpStatus $RUNTIME_AREA/$repo\n' |
932 |
> |
txt += ' rm -f $RUNTIME_AREA/$repo \n' |
933 |
> |
txt += ' echo "MonitorJobID=`echo $MonitorJobID`" | tee -a $RUNTIME_AREA/$repo \n' |
934 |
> |
txt += ' echo "MonitorID=`echo $MonitorID`" | tee -a $RUNTIME_AREA/$repo\n' |
935 |
|
txt += ' fi\n' |
936 |
|
txt += ' fi \n' |
937 |
|
txt += ' exit 1 \n' |
938 |
|
txt += 'fi \n' |
939 |
|
txt += 'echo "CMSSW_VERSION = '+self.version+'"\n' |
940 |
|
txt += 'cd '+self.version+'\n' |
941 |
+ |
########## FEDE FOR DBS2 ###################### |
942 |
+ |
txt += 'SOFTWARE_DIR=`pwd`\n' |
943 |
+ |
txt += 'echo SOFTWARE_DIR=$SOFTWARE_DIR \n' |
944 |
+ |
############################################### |
945 |
|
### needed grep for bug in scramv1 ### |
946 |
+ |
txt += scram+' runtime -sh\n' |
947 |
|
txt += 'eval `'+scram+' runtime -sh | grep -v SCRAMRT_LSB_JOBNAME`\n' |
948 |
+ |
txt += 'echo $PATH\n' |
949 |
|
|
950 |
|
# Handle the arguments: |
951 |
|
txt += "\n" |
952 |
< |
txt += "## ARGUMNETS: $1 Job Number\n" |
542 |
< |
# txt += "## ARGUMNETS: $2 First Event for this job\n" |
543 |
< |
# txt += "## ARGUMNETS: $3 Max Event for this job\n" |
952 |
> |
txt += "## number of arguments (first argument always jobnumber)\n" |
953 |
|
txt += "\n" |
954 |
< |
txt += "narg=$#\n" |
955 |
< |
txt += "if [ $narg -lt 2 ]\n" |
954 |
> |
# txt += "narg=$#\n" |
955 |
> |
txt += "if [ $nargs -lt 2 ]\n" |
956 |
|
txt += "then\n" |
957 |
< |
txt += " echo 'SET_EXE_ENV 1 ==> ERROR Too few arguments' +$narg+ \n" |
957 |
> |
txt += " echo 'SET_EXE_ENV 1 ==> ERROR Too few arguments' +$nargs+ \n" |
958 |
|
txt += ' echo "JOB_EXIT_STATUS = 50113"\n' |
959 |
< |
txt += ' echo "SanityCheckCode = 50113" | tee -a $RUNTIME_AREA/$repo\n' |
959 |
> |
txt += ' echo "JobExitCode=50113" | tee -a $RUNTIME_AREA/$repo\n' |
960 |
|
txt += ' dumpStatus $RUNTIME_AREA/$repo\n' |
961 |
+ |
txt += ' rm -f $RUNTIME_AREA/$repo \n' |
962 |
+ |
txt += ' echo "MonitorJobID=`echo $MonitorJobID`" | tee -a $RUNTIME_AREA/$repo \n' |
963 |
+ |
txt += ' echo "MonitorID=`echo $MonitorID`" | tee -a $RUNTIME_AREA/$repo\n' |
964 |
|
## OLI_Daniele |
965 |
|
txt += ' if [ $middleware == OSG ]; then \n' |
966 |
|
txt += ' echo "Remove working directory: $WORKING_DIR"\n' |
967 |
|
txt += ' cd $RUNTIME_AREA\n' |
968 |
|
txt += ' /bin/rm -rf $WORKING_DIR\n' |
969 |
|
txt += ' if [ -d $WORKING_DIR ] ;then\n' |
970 |
< |
txt += ' echo "OSG WORKING DIR ==> $WORKING_DIR could not be deleted on on WN `hostname`"\n' |
970 |
> |
txt += ' echo "SET_EXE_ENV 50114 ==> OSG $WORKING_DIR could not be deleted on WN `hostname` after Too few arguments for CRAB job wrapper"\n' |
971 |
> |
txt += ' echo "JOB_EXIT_STATUS = 50114"\n' |
972 |
> |
txt += ' echo "JobExitCode=50114" | tee -a $RUNTIME_AREA/$repo\n' |
973 |
> |
txt += ' dumpStatus $RUNTIME_AREA/$repo\n' |
974 |
> |
txt += ' rm -f $RUNTIME_AREA/$repo \n' |
975 |
> |
txt += ' echo "MonitorJobID=`echo $MonitorJobID`" | tee -a $RUNTIME_AREA/$repo \n' |
976 |
> |
txt += ' echo "MonitorID=`echo $MonitorID`" | tee -a $RUNTIME_AREA/$repo\n' |
977 |
|
txt += ' fi\n' |
978 |
|
txt += ' fi \n' |
979 |
|
txt += " exit 1\n" |
980 |
|
txt += "fi\n" |
981 |
|
txt += "\n" |
564 |
– |
txt += "NJob=$1\n" |
565 |
– |
txt += "InputFiles=$2\n" |
566 |
– |
txt += "echo \"<$InputFiles>\"\n" |
567 |
– |
# txt += "Args = ` cat $2 | sed -e \'s/\\\\//g\' -e \'s/\"/\\x27/g\' `" |
568 |
– |
|
569 |
– |
### OLI_DANIELE |
570 |
– |
txt += 'if [ $middleware == LCG ]; then \n' |
571 |
– |
txt += ' echo "MonitorJobID=`echo ${NJob}_$EDG_WL_JOBID`" | tee -a $RUNTIME_AREA/$repo\n' |
572 |
– |
txt += ' echo "SyncGridJobId=`echo $EDG_WL_JOBID`" | tee -a $RUNTIME_AREA/$repo\n' |
573 |
– |
txt += ' echo "SyncCE=`edg-brokerinfo getCE`" | tee -a $RUNTIME_AREA/$repo\n' |
574 |
– |
txt += 'elif [ $middleware == OSG ]; then\n' |
575 |
– |
|
576 |
– |
# OLI: added monitoring for dashbord, use hash of crab.cfg |
577 |
– |
if common.scheduler.boss_scheduler_name == 'condor_g': |
578 |
– |
# create hash of cfg file |
579 |
– |
hash = makeCksum(common.work_space.cfgFileName()) |
580 |
– |
txt += ' echo "MonitorJobID=`echo ${NJob}_'+hash+'_$GLOBUS_GRAM_JOB_CONTACT`" | tee -a $RUNTIME_AREA/$repo\n' |
581 |
– |
txt += ' echo "SyncGridJobId=`echo $GLOBUS_GRAM_JOB_CONTACT`" | tee -a $RUNTIME_AREA/$repo\n' |
582 |
– |
txt += ' echo "SyncCE=`echo $hostname`" | tee -a $RUNTIME_AREA/$repo\n' |
583 |
– |
else : |
584 |
– |
txt += ' echo "MonitorJobID=`echo ${NJob}_$EDG_WL_JOBID`" | tee -a $RUNTIME_AREA/$repo\n' |
585 |
– |
txt += ' echo "SyncGridJobId=`echo $EDG_WL_JOBID`" | tee -a $RUNTIME_AREA/$repo\n' |
586 |
– |
txt += ' echo "SyncCE=`$EDG_WL_LOG_DESTINATION`" | tee -a $RUNTIME_AREA/$repo\n' |
587 |
– |
|
588 |
– |
txt += 'fi\n' |
589 |
– |
txt += 'dumpStatus $RUNTIME_AREA/$repo\n' |
982 |
|
|
983 |
|
# Prepare job-specific part |
984 |
|
job = common.job_list[nj] |
985 |
< |
pset = os.path.basename(job.configFilename()) |
986 |
< |
txt += '\n' |
987 |
< |
#txt += 'echo sed "s#{\'INPUT\'}#$InputFiles#" $RUNTIME_AREA/'+pset+' \n' |
988 |
< |
txt += 'sed "s#{\'INPUT\'}#$InputFiles#" $RUNTIME_AREA/'+pset+' > pset.cfg\n' |
989 |
< |
#txt += 'sed "s#{\'INPUT\'}#${InputFiles}#" $RUNTIME_AREA/'+pset+' > pset1.cfg\n' |
985 |
> |
### FEDE FOR DBS OUTPUT PUBLICATION |
986 |
> |
if (self.datasetPath): |
987 |
> |
txt += '\n' |
988 |
> |
txt += 'DatasetPath='+self.datasetPath+'\n' |
989 |
> |
|
990 |
> |
datasetpath_split = self.datasetPath.split("/") |
991 |
> |
|
992 |
> |
txt += 'PrimaryDataset='+datasetpath_split[1]+'\n' |
993 |
> |
txt += 'DataTier='+datasetpath_split[2]+'\n' |
994 |
> |
#txt += 'ProcessedDataset='+datasetpath_split[3]+'\n' |
995 |
> |
txt += 'ApplicationFamily=cmsRun\n' |
996 |
> |
|
997 |
> |
else: |
998 |
> |
txt += 'DatasetPath=MCDataTier\n' |
999 |
> |
txt += 'PrimaryDataset=null\n' |
1000 |
> |
txt += 'DataTier=null\n' |
1001 |
> |
#txt += 'ProcessedDataset=null\n' |
1002 |
> |
txt += 'ApplicationFamily=MCDataTier\n' |
1003 |
> |
if self.pset != None: #CarlosDaniele |
1004 |
> |
pset = os.path.basename(job.configFilename()) |
1005 |
> |
txt += '\n' |
1006 |
> |
txt += 'cp $RUNTIME_AREA/'+pset+' .\n' |
1007 |
> |
if (self.datasetPath): # standard job |
1008 |
> |
#txt += 'InputFiles=$2\n' |
1009 |
> |
txt += 'InputFiles=${args[1]}\n' |
1010 |
> |
txt += 'MaxEvents=${args[2]}\n' |
1011 |
> |
txt += 'SkipEvents=${args[3]}\n' |
1012 |
> |
txt += 'echo "Inputfiles:<$InputFiles>"\n' |
1013 |
> |
txt += 'sed "s#{\'INPUT\'}#$InputFiles#" '+pset+' > tmp && mv -f tmp '+pset+'\n' |
1014 |
> |
txt += 'echo "MaxEvents:<$MaxEvents>"\n' |
1015 |
> |
txt += 'sed "s#INPUTMAXEVENTS#$MaxEvents#" '+pset+' > tmp && mv -f tmp '+pset+'\n' |
1016 |
> |
txt += 'echo "SkipEvents:<$SkipEvents>"\n' |
1017 |
> |
txt += 'sed "s#INPUTSKIPEVENTS#$SkipEvents#" '+pset+' > tmp && mv -f tmp '+pset+'\n' |
1018 |
> |
else: # pythia like job |
1019 |
> |
seedIndex=1 |
1020 |
> |
if (self.firstRun): |
1021 |
> |
txt += 'FirstRun=${args['+str(seedIndex)+']}\n' |
1022 |
> |
txt += 'echo "FirstRun: <$FirstRun>"\n' |
1023 |
> |
txt += 'sed "s#\<INPUTFIRSTRUN\>#$FirstRun#" '+pset+' > tmp && mv -f tmp '+pset+'\n' |
1024 |
> |
seedIndex=seedIndex+1 |
1025 |
> |
|
1026 |
> |
if (self.sourceSeed): |
1027 |
> |
txt += 'Seed=${args['+str(seedIndex)+']}\n' |
1028 |
> |
txt += 'sed "s#\<INPUT\>#$Seed#" '+pset+' > tmp && mv -f tmp '+pset+'\n' |
1029 |
> |
seedIndex=seedIndex+1 |
1030 |
> |
## the following seeds are not always present |
1031 |
> |
if (self.sourceSeedVtx): |
1032 |
> |
txt += 'VtxSeed=${args['+str(seedIndex)+']}\n' |
1033 |
> |
txt += 'echo "VtxSeed: <$VtxSeed>"\n' |
1034 |
> |
txt += 'sed "s#\<INPUTVTX\>#$VtxSeed#" '+pset+' > tmp && mv -f tmp '+pset+'\n' |
1035 |
> |
seedIndex += 1 |
1036 |
> |
if (self.sourceSeedG4): |
1037 |
> |
txt += 'G4Seed=${args['+str(seedIndex)+']}\n' |
1038 |
> |
txt += 'echo "G4Seed: <$G4Seed>"\n' |
1039 |
> |
txt += 'sed "s#\<INPUTG4\>#$G4Seed#" '+pset+' > tmp && mv -f tmp '+pset+'\n' |
1040 |
> |
seedIndex += 1 |
1041 |
> |
if (self.sourceSeedMix): |
1042 |
> |
txt += 'mixSeed=${args['+str(seedIndex)+']}\n' |
1043 |
> |
txt += 'echo "MixSeed: <$mixSeed>"\n' |
1044 |
> |
txt += 'sed "s#\<INPUTMIX\>#$mixSeed#" '+pset+' > tmp && mv -f tmp '+pset+'\n' |
1045 |
> |
seedIndex += 1 |
1046 |
> |
pass |
1047 |
> |
pass |
1048 |
> |
txt += 'mv -f '+pset+' pset.cfg\n' |
1049 |
|
|
1050 |
|
if len(self.additional_inbox_files) > 0: |
1051 |
< |
for file in self.additional_inbox_files: |
1052 |
< |
txt += 'if [ -e $RUNTIME_AREA/'+file+' ] ; then\n' |
1053 |
< |
txt += ' cp $RUNTIME_AREA/'+file+' .\n' |
603 |
< |
txt += ' chmod +x '+file+'\n' |
604 |
< |
txt += 'fi\n' |
1051 |
> |
txt += 'if [ -e $RUNTIME_AREA/'+self.additional_tgz_name+' ] ; then\n' |
1052 |
> |
txt += ' tar xzvf $RUNTIME_AREA/'+self.additional_tgz_name+'\n' |
1053 |
> |
txt += 'fi\n' |
1054 |
|
pass |
1055 |
|
|
1056 |
< |
txt += 'echo "### END JOB SETUP ENVIRONMENT ###"\n\n' |
1057 |
< |
|
1058 |
< |
txt += '\n' |
1059 |
< |
txt += 'echo "***** cat pset.cfg *********"\n' |
1060 |
< |
txt += 'cat pset.cfg\n' |
1061 |
< |
txt += 'echo "****** end pset.cfg ********"\n' |
1062 |
< |
txt += '\n' |
1063 |
< |
# txt += 'echo "***** cat pset1.cfg *********"\n' |
1064 |
< |
# txt += 'cat pset1.cfg\n' |
1065 |
< |
# txt += 'echo "****** end pset1.cfg ********"\n' |
1056 |
> |
if self.pset != None: #CarlosDaniele |
1057 |
> |
txt += 'echo "### END JOB SETUP ENVIRONMENT ###"\n\n' |
1058 |
> |
|
1059 |
> |
txt += '\n' |
1060 |
> |
txt += 'echo "***** cat pset.cfg *********"\n' |
1061 |
> |
txt += 'cat pset.cfg\n' |
1062 |
> |
txt += 'echo "****** end pset.cfg ********"\n' |
1063 |
> |
txt += '\n' |
1064 |
> |
### FEDE FOR DBS OUTPUT PUBLICATION |
1065 |
> |
txt += 'PSETHASH=`EdmConfigHash < pset.cfg` \n' |
1066 |
> |
txt += 'echo "PSETHASH = $PSETHASH" \n' |
1067 |
> |
############## |
1068 |
> |
txt += '\n' |
1069 |
> |
# txt += 'echo "***** cat pset1.cfg *********"\n' |
1070 |
> |
# txt += 'cat pset1.cfg\n' |
1071 |
> |
# txt += 'echo "****** end pset1.cfg ********"\n' |
1072 |
|
return txt |
1073 |
|
|
1074 |
< |
def wsBuildExe(self, nj): |
1074 |
> |
def wsBuildExe(self, nj=0): |
1075 |
|
""" |
1076 |
|
Put in the script the commands to build an executable |
1077 |
|
or a library. |
1086 |
|
txt += 'if [ $untar_status -ne 0 ]; then \n' |
1087 |
|
txt += ' echo "SET_EXE 1 ==> ERROR Untarring .tgz file failed"\n' |
1088 |
|
txt += ' echo "JOB_EXIT_STATUS = $untar_status" \n' |
1089 |
< |
txt += ' echo "SanityCheckCode = $untar_status" | tee -a $repo\n' |
1089 |
> |
txt += ' echo "JobExitCode=$untar_status" | tee -a $RUNTIME_AREA/$repo\n' |
1090 |
|
txt += ' if [ $middleware == OSG ]; then \n' |
1091 |
|
txt += ' echo "Remove working directory: $WORKING_DIR"\n' |
1092 |
|
txt += ' cd $RUNTIME_AREA\n' |
1093 |
|
txt += ' /bin/rm -rf $WORKING_DIR\n' |
1094 |
|
txt += ' if [ -d $WORKING_DIR ] ;then\n' |
1095 |
< |
txt += ' echo "OSG WORKING DIR ==> $WORKING_DIR could not be deleted on on WN `hostname`"\n' |
1095 |
> |
txt += ' echo "SET_EXE 50999 ==> OSG $WORKING_DIR could not be deleted on WN `hostname` after Untarring .tgz file failed"\n' |
1096 |
> |
txt += ' echo "JOB_EXIT_STATUS = 50999"\n' |
1097 |
> |
txt += ' echo "JobExitCode=50999" | tee -a $RUNTIME_AREA/$repo\n' |
1098 |
> |
txt += ' dumpStatus $RUNTIME_AREA/$repo\n' |
1099 |
> |
txt += ' rm -f $RUNTIME_AREA/$repo \n' |
1100 |
> |
txt += ' echo "MonitorJobID=`echo $MonitorJobID`" | tee -a $RUNTIME_AREA/$repo \n' |
1101 |
> |
txt += ' echo "MonitorID=`echo $MonitorID`" | tee -a $RUNTIME_AREA/$repo\n' |
1102 |
|
txt += ' fi\n' |
1103 |
|
txt += ' fi \n' |
1104 |
|
txt += ' \n' |
1105 |
< |
txt += ' exit $untar_status \n' |
1105 |
> |
txt += ' exit 1 \n' |
1106 |
|
txt += 'else \n' |
1107 |
|
txt += ' echo "Successful untar" \n' |
1108 |
|
txt += 'fi \n' |
1109 |
+ |
txt += '\n' |
1110 |
+ |
txt += 'echo "Include ProdAgentApi and PRODCOMMON in PYTHONPATH"\n' |
1111 |
+ |
txt += 'if [ -z "$PYTHONPATH" ]; then\n' |
1112 |
+ |
#### FEDE FOR DBS OUTPUT PUBLICATION |
1113 |
+ |
txt += ' export PYTHONPATH=$SOFTWARE_DIR/ProdAgentApi:$SOFTWARE_DIR/ProdCommon\n' |
1114 |
+ |
#txt += ' export PYTHONPATH=`pwd`/ProdAgentApi:`pwd`/ProdCommon\n' |
1115 |
+ |
#txt += ' export PYTHONPATH=ProdAgentApi\n' |
1116 |
+ |
txt += 'else\n' |
1117 |
+ |
txt += ' export PYTHONPATH=$SOFTWARE_DIR/ProdAgentApi:$SOFTWARE_DIR/ProdCommon:${PYTHONPATH}\n' |
1118 |
+ |
#txt += ' export PYTHONPATH=`pwd`/ProdAgentApi:`pwd`/ProdCommon:${PYTHONPATH}\n' |
1119 |
+ |
#txt += ' export PYTHONPATH=ProdAgentApi:${PYTHONPATH}\n' |
1120 |
+ |
txt += 'echo "PYTHONPATH=$PYTHONPATH"\n' |
1121 |
+ |
################### |
1122 |
+ |
txt += 'fi\n' |
1123 |
+ |
txt += '\n' |
1124 |
+ |
|
1125 |
|
pass |
1126 |
|
|
1127 |
|
return txt |
1133 |
|
""" |
1134 |
|
|
1135 |
|
def executableName(self): |
1136 |
< |
return self.executable |
1136 |
> |
if self.scriptExe: #CarlosDaniele |
1137 |
> |
return "sh " |
1138 |
> |
else: |
1139 |
> |
return self.executable |
1140 |
|
|
1141 |
|
def executableArgs(self): |
1142 |
< |
return " -p pset.cfg" |
1142 |
> |
if self.scriptExe:#CarlosDaniele |
1143 |
> |
return self.scriptExe + " $NJob" |
1144 |
> |
else: |
1145 |
> |
# if >= CMSSW_1_5_X, add -e |
1146 |
> |
version_array = self.scram.getSWVersion().split('_') |
1147 |
> |
major = 0 |
1148 |
> |
minor = 0 |
1149 |
> |
try: |
1150 |
> |
major = int(version_array[1]) |
1151 |
> |
minor = int(version_array[2]) |
1152 |
> |
except: |
1153 |
> |
msg = "Cannot parse CMSSW version string: " + "_".join(version_array) + " for major and minor release number!" |
1154 |
> |
raise CrabException(msg) |
1155 |
> |
if major >= 1 and minor >= 5 : |
1156 |
> |
return " -e -p pset.cfg" |
1157 |
> |
else: |
1158 |
> |
return " -p pset.cfg" |
1159 |
|
|
1160 |
|
def inputSandbox(self, nj): |
1161 |
|
""" |
1162 |
|
Returns a list of filenames to be put in JDL input sandbox. |
1163 |
|
""" |
1164 |
|
inp_box = [] |
1165 |
< |
# dict added to delete duplicate from input sandbox file list |
1166 |
< |
seen = {} |
1165 |
> |
# # dict added to delete duplicate from input sandbox file list |
1166 |
> |
# seen = {} |
1167 |
|
## code |
1168 |
|
if os.path.isfile(self.tgzNameWithPath): |
1169 |
|
inp_box.append(self.tgzNameWithPath) |
1170 |
+ |
if os.path.isfile(self.MLtgzfile): |
1171 |
+ |
inp_box.append(self.MLtgzfile) |
1172 |
|
## config |
1173 |
< |
inp_box.append(common.job_list[nj].configFilename()) |
1173 |
> |
if not self.pset is None: |
1174 |
> |
inp_box.append(common.work_space.pathForTgz() + 'job/' + self.configFilename()) |
1175 |
|
## additional input files |
1176 |
< |
#for file in self.additional_inbox_files: |
1177 |
< |
# inp_box.append(common.work_space.cwdDir()+file) |
1176 |
> |
tgz = self.additionalInputFileTgz() |
1177 |
> |
inp_box.append(tgz) |
1178 |
|
return inp_box |
1179 |
|
|
1180 |
|
def outputSandbox(self, nj): |
1183 |
|
""" |
1184 |
|
out_box = [] |
1185 |
|
|
687 |
– |
stdout=common.job_list[nj].stdout() |
688 |
– |
stderr=common.job_list[nj].stderr() |
689 |
– |
|
1186 |
|
## User Declared output files |
1187 |
< |
for out in self.output_file: |
1187 |
> |
for out in (self.output_file+self.output_file_sandbox): |
1188 |
|
n_out = nj + 1 |
1189 |
|
out_box.append(self.numberFile_(out,str(n_out))) |
1190 |
|
return out_box |
695 |
– |
return [] |
1191 |
|
|
1192 |
|
def prepareSteeringCards(self): |
1193 |
|
""" |
1201 |
|
""" |
1202 |
|
|
1203 |
|
txt = '\n' |
1204 |
< |
file_list = '' |
1205 |
< |
check = len(self.output_file) |
1206 |
< |
i = 0 |
1207 |
< |
for fileWithSuffix in self.output_file: |
1208 |
< |
i= i + 1 |
1204 |
> |
txt += '# directory content\n' |
1205 |
> |
txt += 'ls \n' |
1206 |
> |
|
1207 |
> |
txt += 'output_exit_status=0\n' |
1208 |
> |
|
1209 |
> |
for fileWithSuffix in (self.output_file_sandbox): |
1210 |
|
output_file_num = self.numberFile_(fileWithSuffix, '$NJob') |
715 |
– |
file_list=file_list+output_file_num+'' |
1211 |
|
txt += '\n' |
1212 |
< |
txt += 'ls \n' |
1212 |
> |
txt += '# check output file\n' |
1213 |
> |
txt += 'if [ -e ./'+fileWithSuffix+' ] ; then\n' |
1214 |
> |
txt += ' mv '+fileWithSuffix+' $RUNTIME_AREA\n' |
1215 |
> |
txt += ' cp $RUNTIME_AREA/'+fileWithSuffix+' $RUNTIME_AREA/'+output_file_num+'\n' |
1216 |
> |
txt += 'else\n' |
1217 |
> |
txt += ' exit_status=60302\n' |
1218 |
> |
txt += ' echo "ERROR: Problem with output file '+fileWithSuffix+'"\n' |
1219 |
> |
if common.scheduler.boss_scheduler_name == 'condor_g': |
1220 |
> |
txt += ' if [ $middleware == OSG ]; then \n' |
1221 |
> |
txt += ' echo "prepare dummy output file"\n' |
1222 |
> |
txt += ' echo "Processing of job output failed" > $RUNTIME_AREA/'+output_file_num+'\n' |
1223 |
> |
txt += ' fi \n' |
1224 |
> |
txt += 'fi\n' |
1225 |
> |
|
1226 |
> |
for fileWithSuffix in (self.output_file): |
1227 |
> |
output_file_num = self.numberFile_(fileWithSuffix, '$NJob') |
1228 |
|
txt += '\n' |
1229 |
< |
txt += 'ls '+fileWithSuffix+'\n' |
1230 |
< |
txt += 'exe_result=$?\n' |
1231 |
< |
txt += 'if [ $exe_result -ne 0 ] ; then\n' |
1232 |
< |
txt += ' echo "ERROR: No output file to manage"\n' |
723 |
< |
### OLI_DANIELE |
724 |
< |
txt += ' if [ $middleware == OSG ]; then \n' |
725 |
< |
txt += ' echo "prepare dummy output file"\n' |
726 |
< |
txt += ' cp '+fileWithSuffix+' $RUNTIME_AREA/'+output_file_num+'\n' |
727 |
< |
txt += ' fi \n' |
1229 |
> |
txt += '# check output file\n' |
1230 |
> |
txt += 'if [ -e ./'+fileWithSuffix+' ] ; then\n' |
1231 |
> |
txt += ' mv '+fileWithSuffix+' $RUNTIME_AREA\n' |
1232 |
> |
txt += ' cp $RUNTIME_AREA/'+fileWithSuffix+' $RUNTIME_AREA/'+output_file_num+'\n' |
1233 |
|
txt += 'else\n' |
1234 |
< |
txt += ' cp '+fileWithSuffix+' $RUNTIME_AREA/'+output_file_num+'\n' |
1234 |
> |
txt += ' exit_status=60302\n' |
1235 |
> |
txt += ' echo "ERROR: Problem with output file '+fileWithSuffix+'"\n' |
1236 |
> |
txt += ' echo "JOB_EXIT_STATUS = $exit_status"\n' |
1237 |
> |
txt += ' output_exit_status=$exit_status\n' |
1238 |
> |
if common.scheduler.boss_scheduler_name == 'condor_g': |
1239 |
> |
txt += ' if [ $middleware == OSG ]; then \n' |
1240 |
> |
txt += ' echo "prepare dummy output file"\n' |
1241 |
> |
txt += ' echo "Processing of job output failed" > $RUNTIME_AREA/'+output_file_num+'\n' |
1242 |
> |
txt += ' fi \n' |
1243 |
|
txt += 'fi\n' |
1244 |
< |
if i == check: |
1245 |
< |
txt += 'cd $RUNTIME_AREA\n' |
1246 |
< |
pass |
1247 |
< |
pass |
1248 |
< |
|
1249 |
< |
file_list=file_list[:-1] |
737 |
< |
txt += 'file_list="'+file_list+'"\n' |
738 |
< |
### OLI_DANIELE |
739 |
< |
txt += 'if [ $middleware == OSG ]; then\n' |
740 |
< |
txt += ' cd $RUNTIME_AREA\n' |
741 |
< |
txt += ' echo "Remove working directory: $WORKING_DIR"\n' |
742 |
< |
txt += ' /bin/rm -rf $WORKING_DIR\n' |
743 |
< |
txt += ' if [ -d $WORKING_DIR ] ;then\n' |
744 |
< |
txt += ' echo "OSG WORKING DIR ==> $WORKING_DIR could not be deleted on on WN `hostname`"\n' |
745 |
< |
txt += ' fi\n' |
746 |
< |
txt += 'fi\n' |
747 |
< |
txt += '\n' |
1244 |
> |
file_list = [] |
1245 |
> |
for fileWithSuffix in (self.output_file): |
1246 |
> |
file_list.append(self.numberFile_(fileWithSuffix, '$NJob')) |
1247 |
> |
|
1248 |
> |
txt += 'file_list="'+string.join(file_list,' ')+'"\n' |
1249 |
> |
txt += 'cd $RUNTIME_AREA\n' |
1250 |
|
return txt |
1251 |
|
|
1252 |
|
def numberFile_(self, file, txt): |
1257 |
|
# take away last extension |
1258 |
|
name = p[0] |
1259 |
|
for x in p[1:-1]: |
1260 |
< |
name=name+"."+x |
1260 |
> |
name=name+"."+x |
1261 |
|
# add "_txt" |
1262 |
|
if len(p)>1: |
1263 |
< |
ext = p[len(p)-1] |
1264 |
< |
#result = name + '_' + str(txt) + "." + ext |
763 |
< |
result = name + '_' + txt + "." + ext |
1263 |
> |
ext = p[len(p)-1] |
1264 |
> |
result = name + '_' + txt + "." + ext |
1265 |
|
else: |
1266 |
< |
#result = name + '_' + str(txt) |
766 |
< |
result = name + '_' + txt |
1266 |
> |
result = name + '_' + txt |
1267 |
|
|
1268 |
|
return result |
1269 |
|
|
1270 |
< |
def getRequirements(self): |
1270 |
> |
def getRequirements(self, nj=[]): |
1271 |
|
""" |
1272 |
|
return job requirements to add to jdl files |
1273 |
|
""" |
1274 |
|
req = '' |
1275 |
< |
if common.analisys_common_info['sites']: |
1276 |
< |
if common.analisys_common_info['sw_version']: |
1277 |
< |
req='Member("VO-cms-' + \ |
1278 |
< |
common.analisys_common_info['sw_version'] + \ |
1279 |
< |
'", other.GlueHostApplicationSoftwareRunTimeEnvironment)' |
1280 |
< |
if len(common.analisys_common_info['sites'])>0: |
1281 |
< |
req = req + ' && (' |
1282 |
< |
for i in range(len(common.analisys_common_info['sites'])): |
1283 |
< |
req = req + 'other.GlueCEInfoHostName == "' \ |
1284 |
< |
+ common.analisys_common_info['sites'][i] + '"' |
1285 |
< |
if ( i < (int(len(common.analisys_common_info['sites']) - 1)) ): |
1286 |
< |
req = req + ' || ' |
1287 |
< |
req = req + ')' |
788 |
< |
#print "req = ", req |
1275 |
> |
if self.version: |
1276 |
> |
req='Member("VO-cms-' + \ |
1277 |
> |
self.version + \ |
1278 |
> |
'", other.GlueHostApplicationSoftwareRunTimeEnvironment)' |
1279 |
> |
## SL add requirement for OS version only if SL4 |
1280 |
> |
#reSL4 = re.compile( r'slc4' ) |
1281 |
> |
if self.executable_arch: # and reSL4.search(self.executable_arch): |
1282 |
> |
req+=' && Member("VO-cms-' + \ |
1283 |
> |
self.executable_arch + \ |
1284 |
> |
'", other.GlueHostApplicationSoftwareRunTimeEnvironment)' |
1285 |
> |
|
1286 |
> |
req = req + ' && (other.GlueHostNetworkAdapterOutboundIP)' |
1287 |
> |
|
1288 |
|
return req |
1289 |
|
|
1290 |
|
def configFilename(self): |
1301 |
|
txt += ' echo "### SETUP CMS OSG ENVIRONMENT ###"\n' |
1302 |
|
txt += ' if [ -f $GRID3_APP_DIR/cmssoft/cmsset_default.sh ] ;then\n' |
1303 |
|
txt += ' # Use $GRID3_APP_DIR/cmssoft/cmsset_default.sh to setup cms software\n' |
1304 |
+ |
txt += ' export SCRAM_ARCH='+self.executable_arch+'\n' |
1305 |
|
txt += ' source $GRID3_APP_DIR/cmssoft/cmsset_default.sh '+self.version+'\n' |
1306 |
< |
txt += ' elif [ -f $OSG_APP/cmssoft/cmsset_default.sh ] ;then\n' |
1307 |
< |
txt += ' # Use $OSG_APP/cmssoft/cmsset_default.sh to setup cms software\n' |
1308 |
< |
txt += ' source $OSG_APP/cmssoft/cmsset_default.sh '+self.version+'\n' |
1306 |
> |
txt += ' elif [ -f $OSG_APP/cmssoft/cms/cmsset_default.sh ] ;then\n' |
1307 |
> |
txt += ' # Use $OSG_APP/cmssoft/cms/cmsset_default.sh to setup cms software\n' |
1308 |
> |
txt += ' export SCRAM_ARCH='+self.executable_arch+'\n' |
1309 |
> |
txt += ' source $OSG_APP/cmssoft/cms/cmsset_default.sh '+self.version+'\n' |
1310 |
|
txt += ' else\n' |
1311 |
< |
txt += ' echo "SET_CMS_ENV 10020 ==> ERROR $GRID3_APP_DIR/cmssoft/cmsset_default.sh and $OSG_APP/cmssoft/cmsset_default.sh file not found"\n' |
1311 |
> |
txt += ' echo "SET_CMS_ENV 10020 ==> ERROR $GRID3_APP_DIR/cmssoft/cmsset_default.sh and $OSG_APP/cmssoft/cms/cmsset_default.sh file not found"\n' |
1312 |
|
txt += ' echo "JOB_EXIT_STATUS = 10020"\n' |
1313 |
|
txt += ' echo "JobExitCode=10020" | tee -a $RUNTIME_AREA/$repo\n' |
1314 |
|
txt += ' dumpStatus $RUNTIME_AREA/$repo\n' |
1315 |
< |
txt += ' exit\n' |
1315 |
> |
txt += ' rm -f $RUNTIME_AREA/$repo \n' |
1316 |
> |
txt += ' echo "MonitorJobID=`echo $MonitorJobID`" | tee -a $RUNTIME_AREA/$repo \n' |
1317 |
> |
txt += ' echo "MonitorID=`echo $MonitorID`" | tee -a $RUNTIME_AREA/$repo\n' |
1318 |
> |
txt += ' exit 1\n' |
1319 |
|
txt += '\n' |
1320 |
|
txt += ' echo "Remove working directory: $WORKING_DIR"\n' |
1321 |
|
txt += ' cd $RUNTIME_AREA\n' |
1322 |
|
txt += ' /bin/rm -rf $WORKING_DIR\n' |
1323 |
|
txt += ' if [ -d $WORKING_DIR ] ;then\n' |
1324 |
< |
txt += ' echo "OSG WORKING DIR ==> $WORKING_DIR could not be deleted on on WN `hostname`"\n' |
1324 |
> |
txt += ' echo "SET_CMS_ENV 10017 ==> OSG $WORKING_DIR could not be deleted on WN `hostname` after $GRID3_APP_DIR/cmssoft/cmsset_default.sh and $OSG_APP/cmssoft/cms/cmsset_default.sh file not found"\n' |
1325 |
> |
txt += ' echo "JOB_EXIT_STATUS = 10017"\n' |
1326 |
> |
txt += ' echo "JobExitCode=10017" | tee -a $RUNTIME_AREA/$repo\n' |
1327 |
> |
txt += ' dumpStatus $RUNTIME_AREA/$repo\n' |
1328 |
> |
txt += ' rm -f $RUNTIME_AREA/$repo \n' |
1329 |
> |
txt += ' echo "MonitorJobID=`echo $MonitorJobID`" | tee -a $RUNTIME_AREA/$repo \n' |
1330 |
> |
txt += ' echo "MonitorID=`echo $MonitorID`" | tee -a $RUNTIME_AREA/$repo\n' |
1331 |
|
txt += ' fi\n' |
1332 |
|
txt += '\n' |
1333 |
< |
txt += ' exit\n' |
1333 |
> |
txt += ' exit 1\n' |
1334 |
|
txt += ' fi\n' |
1335 |
|
txt += '\n' |
1336 |
|
txt += ' echo "SET_CMS_ENV 0 ==> setup cms environment ok"\n' |
1346 |
|
""" |
1347 |
|
txt = ' \n' |
1348 |
|
txt += ' echo " ### SETUP CMS LCG ENVIRONMENT ### "\n' |
839 |
– |
txt += ' echo "JOB_EXIT_STATUS = 0"\n' |
1349 |
|
txt += ' if [ ! $VO_CMS_SW_DIR ] ;then\n' |
1350 |
|
txt += ' echo "SET_CMS_ENV 10031 ==> ERROR CMS software dir not found on WN `hostname`"\n' |
1351 |
|
txt += ' echo "JOB_EXIT_STATUS = 10031" \n' |
1352 |
|
txt += ' echo "JobExitCode=10031" | tee -a $RUNTIME_AREA/$repo\n' |
1353 |
|
txt += ' dumpStatus $RUNTIME_AREA/$repo\n' |
1354 |
< |
txt += ' exit\n' |
1354 |
> |
txt += ' rm -f $RUNTIME_AREA/$repo \n' |
1355 |
> |
txt += ' echo "MonitorJobID=`echo $MonitorJobID`" | tee -a $RUNTIME_AREA/$repo \n' |
1356 |
> |
txt += ' echo "MonitorID=`echo $MonitorID`" | tee -a $RUNTIME_AREA/$repo\n' |
1357 |
> |
txt += ' exit 1\n' |
1358 |
|
txt += ' else\n' |
1359 |
|
txt += ' echo "Sourcing environment... "\n' |
1360 |
|
txt += ' if [ ! -s $VO_CMS_SW_DIR/cmsset_default.sh ] ;then\n' |
1362 |
|
txt += ' echo "JOB_EXIT_STATUS = 10020"\n' |
1363 |
|
txt += ' echo "JobExitCode=10020" | tee -a $RUNTIME_AREA/$repo\n' |
1364 |
|
txt += ' dumpStatus $RUNTIME_AREA/$repo\n' |
1365 |
< |
txt += ' exit\n' |
1365 |
> |
txt += ' rm -f $RUNTIME_AREA/$repo \n' |
1366 |
> |
txt += ' echo "MonitorJobID=`echo $MonitorJobID`" | tee -a $RUNTIME_AREA/$repo \n' |
1367 |
> |
txt += ' echo "MonitorID=`echo $MonitorID`" | tee -a $RUNTIME_AREA/$repo\n' |
1368 |
> |
txt += ' exit 1\n' |
1369 |
|
txt += ' fi\n' |
1370 |
|
txt += ' echo "sourcing $VO_CMS_SW_DIR/cmsset_default.sh"\n' |
1371 |
|
txt += ' source $VO_CMS_SW_DIR/cmsset_default.sh\n' |
1375 |
|
txt += ' echo "JOB_EXIT_STATUS = 10032"\n' |
1376 |
|
txt += ' echo "JobExitCode=10032" | tee -a $RUNTIME_AREA/$repo\n' |
1377 |
|
txt += ' dumpStatus $RUNTIME_AREA/$repo\n' |
1378 |
< |
txt += ' exit\n' |
1378 |
> |
txt += ' rm -f $RUNTIME_AREA/$repo \n' |
1379 |
> |
txt += ' echo "MonitorJobID=`echo $MonitorJobID`" | tee -a $RUNTIME_AREA/$repo \n' |
1380 |
> |
txt += ' echo "MonitorID=`echo $MonitorID`" | tee -a $RUNTIME_AREA/$repo\n' |
1381 |
> |
txt += ' exit 1\n' |
1382 |
|
txt += ' fi\n' |
1383 |
|
txt += ' fi\n' |
1384 |
|
txt += ' \n' |
867 |
– |
txt += ' string=`cat /etc/redhat-release`\n' |
868 |
– |
txt += ' echo $string\n' |
869 |
– |
txt += ' if [[ $string = *alhalla* ]]; then\n' |
870 |
– |
txt += ' echo "SCRAM_ARCH= $SCRAM_ARCH"\n' |
871 |
– |
txt += ' elif [[ $string = *Enterprise* ]] || [[ $string = *cientific* ]]; then\n' |
872 |
– |
txt += ' export SCRAM_ARCH=slc3_ia32_gcc323\n' |
873 |
– |
txt += ' echo "SCRAM_ARCH= $SCRAM_ARCH"\n' |
874 |
– |
txt += ' else\n' |
875 |
– |
txt += ' echo "SET_CMS_ENV 1 ==> ERROR OS unknown, LCG environment not initialized"\n' |
876 |
– |
txt += ' echo "JOB_EXIT_STATUS = 10033"\n' |
877 |
– |
txt += ' echo "JobExitCode=10033" | tee -a $RUNTIME_AREA/$repo\n' |
878 |
– |
txt += ' dumpStatus $RUNTIME_AREA/$repo\n' |
879 |
– |
txt += ' exit\n' |
880 |
– |
txt += ' fi\n' |
1385 |
|
txt += ' echo "SET_CMS_ENV 0 ==> setup cms environment ok"\n' |
1386 |
|
txt += ' echo "### END SETUP CMS LCG ENVIRONMENT ###"\n' |
1387 |
|
return txt |
1388 |
+ |
|
1389 |
+ |
### FEDE FOR DBS OUTPUT PUBLICATION |
1390 |
+ |
def modifyReport(self, nj): |
1391 |
+ |
""" |
1392 |
+ |
insert the part of the script that modifies the FrameworkJob Report |
1393 |
+ |
""" |
1394 |
+ |
|
1395 |
+ |
txt = '' |
1396 |
+ |
try: |
1397 |
+ |
publish_data = int(self.cfg_params['USER.publish_data']) |
1398 |
+ |
except KeyError: |
1399 |
+ |
publish_data = 0 |
1400 |
+ |
if (publish_data == 1): |
1401 |
+ |
txt += 'echo "Modify Job Report" \n' |
1402 |
+ |
#txt += 'chmod a+x $RUNTIME_AREA/'+self.version+'/ProdAgentApi/FwkJobRep/ModifyJobReport.py\n' |
1403 |
+ |
################ FEDE FOR DBS2 ############################################# |
1404 |
+ |
txt += 'chmod a+x $SOFTWARE_DIR/ProdAgentApi/FwkJobRep/ModifyJobReport.py\n' |
1405 |
+ |
############################################################################# |
1406 |
+ |
#try: |
1407 |
+ |
# publish_data = int(self.cfg_params['USER.publish_data']) |
1408 |
+ |
#except KeyError: |
1409 |
+ |
# publish_data = 0 |
1410 |
+ |
|
1411 |
+ |
txt += 'if [ -z "$SE" ]; then\n' |
1412 |
+ |
txt += ' SE="" \n' |
1413 |
+ |
txt += 'fi \n' |
1414 |
+ |
txt += 'if [ -z "$SE_PATH" ]; then\n' |
1415 |
+ |
txt += ' SE_PATH="" \n' |
1416 |
+ |
txt += 'fi \n' |
1417 |
+ |
txt += 'echo "SE = $SE"\n' |
1418 |
+ |
txt += 'echo "SE_PATH = $SE_PATH"\n' |
1419 |
+ |
|
1420 |
+ |
#if (publish_data == 1): |
1421 |
+ |
#processedDataset = self.cfg_params['USER.processed_datasetname'] |
1422 |
+ |
processedDataset = self.cfg_params['USER.publish_data_name'] |
1423 |
+ |
txt += 'ProcessedDataset='+processedDataset+'\n' |
1424 |
+ |
#### LFN=/store/user/<user>/processedDataset_PSETHASH |
1425 |
+ |
txt += 'if [ "$SE_PATH" == "" ]; then\n' |
1426 |
+ |
#### FEDE: added slash in LFN ############## |
1427 |
+ |
txt += ' FOR_LFN=/copy_problems/ \n' |
1428 |
+ |
txt += 'else \n' |
1429 |
+ |
txt += ' tmp=`echo $SE_PATH | awk -F \'store\' \'{print$2}\'` \n' |
1430 |
+ |
##### FEDE TO BE CHANGED, BECAUSE STORE IS HARDCODED!!!! ######## |
1431 |
+ |
txt += ' FOR_LFN=/store$tmp \n' |
1432 |
+ |
txt += 'fi \n' |
1433 |
+ |
txt += 'echo "ProcessedDataset = $ProcessedDataset"\n' |
1434 |
+ |
txt += 'echo "FOR_LFN = $FOR_LFN" \n' |
1435 |
+ |
txt += 'echo "CMSSW_VERSION = $CMSSW_VERSION"\n\n' |
1436 |
+ |
#txt += 'echo "$RUNTIME_AREA/'+self.version+'/ProdAgentApi/FwkJobRep/ModifyJobReport.py crab_fjr_$NJob.xml $NJob $FOR_LFN $PrimaryDataset $DataTier $ProcessedDataset $ApplicationFamily $executable $CMSSW_VERSION $PSETHASH $SE $SE_PATH"\n' |
1437 |
+ |
txt += 'echo "$SOFTWARE_DIR/ProdAgentApi/FwkJobRep/ModifyJobReport.py crab_fjr_$NJob.xml $NJob $FOR_LFN $PrimaryDataset $DataTier $ProcessedDataset $ApplicationFamily $executable $CMSSW_VERSION $PSETHASH $SE $SE_PATH"\n' |
1438 |
+ |
txt += '$SOFTWARE_DIR/ProdAgentApi/FwkJobRep/ModifyJobReport.py crab_fjr_$NJob.xml $NJob $FOR_LFN $PrimaryDataset $DataTier $ProcessedDataset $ApplicationFamily $executable $CMSSW_VERSION $PSETHASH $SE $SE_PATH\n' |
1439 |
+ |
#txt += '$RUNTIME_AREA/'+self.version+'/ProdAgentApi/FwkJobRep/ModifyJobReport.py crab_fjr_$NJob.xml $NJob $FOR_LFN $PrimaryDataset $DataTier $ProcessedDataset $ApplicationFamily $executable $CMSSW_VERSION $PSETHASH $SE $SE_PATH\n' |
1440 |
+ |
|
1441 |
+ |
txt += 'modifyReport_result=$?\n' |
1442 |
+ |
txt += 'echo modifyReport_result = $modifyReport_result\n' |
1443 |
+ |
txt += 'if [ $modifyReport_result -ne 0 ]; then\n' |
1444 |
+ |
txt += ' exit_status=1\n' |
1445 |
+ |
txt += ' echo "ERROR: Problem with ModifyJobReport"\n' |
1446 |
+ |
txt += 'else\n' |
1447 |
+ |
txt += ' mv NewFrameworkJobReport.xml crab_fjr_$NJob.xml\n' |
1448 |
+ |
txt += 'fi\n' |
1449 |
+ |
else: |
1450 |
+ |
txt += 'echo "no data publication required"\n' |
1451 |
+ |
#txt += 'ProcessedDataset=no_data_to_publish \n' |
1452 |
+ |
#### FEDE: added slash in LFN ############## |
1453 |
+ |
#txt += 'FOR_LFN=/local/ \n' |
1454 |
+ |
#txt += 'echo "ProcessedDataset = $ProcessedDataset"\n' |
1455 |
+ |
#txt += 'echo "FOR_LFN = $FOR_LFN" \n' |
1456 |
+ |
return txt |
1457 |
+ |
|
1458 |
+ |
def cleanEnv(self): |
1459 |
+ |
### OLI_DANIELE |
1460 |
+ |
txt = '' |
1461 |
+ |
txt += 'if [ $middleware == OSG ]; then\n' |
1462 |
+ |
txt += ' cd $RUNTIME_AREA\n' |
1463 |
+ |
txt += ' echo "Remove working directory: $WORKING_DIR"\n' |
1464 |
+ |
txt += ' /bin/rm -rf $WORKING_DIR\n' |
1465 |
+ |
txt += ' if [ -d $WORKING_DIR ] ;then\n' |
1466 |
+ |
txt += ' echo "SET_EXE 60999 ==> OSG $WORKING_DIR could not be deleted on WN `hostname` after cleanup of WN"\n' |
1467 |
+ |
txt += ' echo "JOB_EXIT_STATUS = 60999"\n' |
1468 |
+ |
txt += ' echo "JobExitCode=60999" | tee -a $RUNTIME_AREA/$repo\n' |
1469 |
+ |
txt += ' dumpStatus $RUNTIME_AREA/$repo\n' |
1470 |
+ |
txt += ' rm -f $RUNTIME_AREA/$repo \n' |
1471 |
+ |
txt += ' echo "MonitorJobID=`echo $MonitorJobID`" | tee -a $RUNTIME_AREA/$repo \n' |
1472 |
+ |
txt += ' echo "MonitorID=`echo $MonitorID`" | tee -a $RUNTIME_AREA/$repo\n' |
1473 |
+ |
txt += ' fi\n' |
1474 |
+ |
txt += 'fi\n' |
1475 |
+ |
txt += '\n' |
1476 |
+ |
return txt |
1477 |
+ |
|
1478 |
+ |
def setParam_(self, param, value): |
1479 |
+ |
self._params[param] = value |
1480 |
+ |
|
1481 |
+ |
def getParams(self): |
1482 |
+ |
return self._params |
1483 |
+ |
|
1484 |
+ |
def setTaskid_(self): |
1485 |
+ |
self._taskId = self.cfg_params['taskId'] |
1486 |
+ |
|
1487 |
+ |
def getTaskid(self): |
1488 |
+ |
return self._taskId |
1489 |
+ |
|
1490 |
+ |
def uniquelist(self, old): |
1491 |
+ |
""" |
1492 |
+ |
remove duplicates from a list |
1493 |
+ |
""" |
1494 |
+ |
nd={} |
1495 |
+ |
for e in old: |
1496 |
+ |
nd[e]=0 |
1497 |
+ |
return nd.keys() |
1498 |
+ |
|
1499 |
+ |
|
1500 |
+ |
def checkOut(self, limit): |
1501 |
+ |
""" |
1502 |
+ |
check the dimension of the output files |
1503 |
+ |
""" |
1504 |
+ |
txt = 'echo "*****************************************"\n' |
1505 |
+ |
txt += 'echo "** Starting output sandbox limit check **"\n' |
1506 |
+ |
txt += 'echo "*****************************************"\n' |
1507 |
+ |
allOutFiles = "" |
1508 |
+ |
listOutFiles = [] |
1509 |
+ |
for fileOut in (self.output_file+self.output_file_sandbox): |
1510 |
+ |
if fileOut.find('crab_fjr') == -1: |
1511 |
+ |
allOutFiles = allOutFiles + " " + self.numberFile_(fileOut, '$NJob') |
1512 |
+ |
listOutFiles.append(self.numberFile_(fileOut, '$NJob')) |
1513 |
+ |
txt += 'echo "OUTPUT files: '+str(allOutFiles)+'";\n' |
1514 |
+ |
txt += 'ls -gGhrta;\n' |
1515 |
+ |
txt += 'sum=0;\n' |
1516 |
+ |
txt += 'for file in '+str(allOutFiles)+' ; do\n' |
1517 |
+ |
txt += ' if [ -e $file ]; then\n' |
1518 |
+ |
txt += ' tt=`ls -gGrta $file | awk \'{ print $3 }\'`\n' |
1519 |
+ |
txt += ' sum=`expr $sum + $tt`\n' |
1520 |
+ |
txt += ' else\n' |
1521 |
+ |
txt += ' echo "WARNING: output file $file not found!"\n' |
1522 |
+ |
txt += ' fi\n' |
1523 |
+ |
txt += 'done\n' |
1524 |
+ |
txt += 'echo "Total Output dimension: $sum";\n' |
1525 |
+ |
txt += 'limit='+str(limit)+';\n' |
1526 |
+ |
txt += 'echo "OUTPUT FILES LIMIT SET TO: $limit";\n' |
1527 |
+ |
txt += 'if [ $limit -lt $sum ]; then\n' |
1528 |
+ |
txt += ' echo "WARNING: output files have to big size - something will be lost;"\n' |
1529 |
+ |
txt += ' echo " checking the output file sizes..."\n' |
1530 |
+ |
""" |
1531 |
+ |
txt += ' dim=0;\n' |
1532 |
+ |
txt += ' exclude=0;\n' |
1533 |
+ |
txt += ' for files in '+str(allOutFiles)+' ; do\n' |
1534 |
+ |
txt += ' sumTemp=0;\n' |
1535 |
+ |
txt += ' for file2 in '+str(allOutFiles)+' ; do\n' |
1536 |
+ |
txt += ' if [ $file != $file2 ]; then\n' |
1537 |
+ |
txt += ' tt=`ls -gGrta $file2 | awk \'{ print $3 }\';`\n' |
1538 |
+ |
txt += ' sumTemp=`expr $sumTemp + $tt`;\n' |
1539 |
+ |
txt += ' fi\n' |
1540 |
+ |
txt += ' done\n' |
1541 |
+ |
txt += ' if [ $sumTemp -lt $limit ]; then\n' |
1542 |
+ |
txt += ' if [ $dim -lt $sumTemp ]; then\n' |
1543 |
+ |
txt += ' dim=$sumTemp;\n' |
1544 |
+ |
txt += ' exclude=$file;\n' |
1545 |
+ |
txt += ' fi\n' |
1546 |
+ |
txt += ' fi\n' |
1547 |
+ |
txt += ' done\n' |
1548 |
+ |
txt += ' echo "Dimension calculated: $dim"; echo "File to exclude: $exclude";\n' |
1549 |
+ |
""" |
1550 |
+ |
txt += ' tot=0;\n' |
1551 |
+ |
txt += ' for file2 in '+str(allOutFiles)+' ; do\n' |
1552 |
+ |
txt += ' tt=`ls -gGrta $file2 | awk \'{ print $3 }\';`\n' |
1553 |
+ |
txt += ' tot=`expr $tot + $tt`;\n' |
1554 |
+ |
txt += ' if [ $limit -lt $tot ]; then\n' |
1555 |
+ |
txt += ' tot=`expr $tot - $tt`;\n' |
1556 |
+ |
txt += ' fileLast=$file;\n' |
1557 |
+ |
txt += ' break;\n' |
1558 |
+ |
txt += ' fi\n' |
1559 |
+ |
txt += ' done\n' |
1560 |
+ |
txt += ' echo "Dimension calculated: $tot"; echo "First file to exclude: $file";\n' |
1561 |
+ |
txt += ' flag=0;\n' |
1562 |
+ |
txt += ' for filess in '+str(allOutFiles)+' ; do\n' |
1563 |
+ |
txt += ' if [ $fileLast = $filess ]; then\n' |
1564 |
+ |
txt += ' flag=1;\n' |
1565 |
+ |
txt += ' fi\n' |
1566 |
+ |
txt += ' if [ $flag -eq 1 ]; then\n' |
1567 |
+ |
txt += ' rm -f $filess;\n' |
1568 |
+ |
txt += ' fi\n' |
1569 |
+ |
txt += ' done\n' |
1570 |
+ |
txt += ' ls -agGhrt;\n' |
1571 |
+ |
txt += ' echo "WARNING: output files are too big in dimension: can not put in the output_sandbox.";\n' |
1572 |
+ |
txt += ' echo "JOB_EXIT_STATUS = 70000";\n' |
1573 |
+ |
txt += ' exit_status=70000;\n' |
1574 |
+ |
txt += 'else' |
1575 |
+ |
txt += ' echo "Total Output dimension $sum is fine.";\n' |
1576 |
+ |
txt += 'fi\n' |
1577 |
+ |
txt += 'echo "*****************************************"\n' |
1578 |
+ |
txt += 'echo "*** Ending output sandbox limit check ***"\n' |
1579 |
+ |
txt += 'echo "*****************************************"\n' |
1580 |
+ |
return txt |