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slacapra |
1.1 |
from JobType import JobType
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from crab_logger import Logger
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from crab_exceptions import *
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from crab_util import *
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import common
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import PubDB
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import orcarcBuilder
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import orcarcBuilderOld
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import Scram
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import TarBall
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import os, string, re
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import math
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class Orca_pubdb(JobType):
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def __init__(self, cfg_params):
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slacapra |
1.2 |
JobType.__init__(self, 'ORCA_PUBDB')
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slacapra |
1.1 |
common.logger.debug(3,'ORCA_pubdb::__init__')
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self.analisys_common_info = {}
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# Marco.
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self._params = {}
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self.cfg_params = cfg_params
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log = common.logger
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self.scram = Scram.Scram(cfg_params)
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scramArea = ''
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self.additional_inbox_files = []
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self.scriptExe = ''
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self.version = self.scram.getSWVersion()
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self.setParam_('application', self.version)
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common.analisys_common_info['sw_version'] = self.version
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common.analisys_common_info['copy_input_data'] = 0
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self.total_number_of_jobs = 0
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self.job_number_of_events = 0
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### collect Data cards
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try:
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self.owner = cfg_params['ORCA.owner']
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self.setParam_('owner', self.owner)
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log.debug(6, "Orca::Orca(): owner = "+self.owner)
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self.dataset = cfg_params['ORCA.dataset']
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self.setParam_('dataset', self.dataset)
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log.debug(6, "Orca::Orca(): dataset = "+self.dataset)
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except KeyError:
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msg = "Error: owner and/or dataset not defined "
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raise CrabException(msg)
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self.dataTiers = []
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try:
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tmpDataTiers = string.split(cfg_params['ORCA.data_tier'],',')
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for tmp in tmpDataTiers:
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tmp=string.strip(tmp)
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self.dataTiers.append(tmp)
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pass
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pass
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except KeyError:
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pass
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log.debug(6, "Orca_pubdb::Orca_pubdb(): dataTiers = "+str(self.dataTiers))
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## now the application
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try:
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self.executable = cfg_params['ORCA.executable']
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log.debug(6, "Orca_pubdb::Orca_pubdb(): executable = "+self.executable)
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self.setParam_('exe', self.executable)
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except KeyError:
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msg = "Error: executable not defined "
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raise CrabException(msg)
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try:
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self.orcarc_file = cfg_params['ORCA.orcarc_file']
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log.debug(6, "Orca_pubdb::Orca_pubdb(): orcarc file = "+self.orcarc_file)
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if (not os.path.exists(self.orcarc_file)):
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raise CrabException("User defined .orcarc file "+self.orcarc_file+" does not exist")
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except KeyError:
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log.message("Using empty orcarc file")
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self.orcarc_file = ''
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# output files
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try:
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self.output_file = []
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tmp = cfg_params['ORCA.output_file']
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if tmp != '':
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tmpOutFiles = string.split(cfg_params['ORCA.output_file'],',')
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log.debug(7, 'Orca_pubdb::Orca_pubdb(): output files '+str(tmpOutFiles))
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for tmp in tmpOutFiles:
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tmp=string.strip(tmp)
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self.output_file.append(tmp)
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pass
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else:
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log.message("No output file defined: only stdout/err will be available")
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pass
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pass
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except KeyError:
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log.message("No output file defined: only stdout/err will be available")
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pass
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# script_exe file as additional file in inputSandbox
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try:
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self.scriptExe = cfg_params['ORCA.script_exe']
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self.additional_inbox_files.append(self.scriptExe)
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except KeyError:
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pass
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if self.scriptExe != '':
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if os.path.isfile(self.scriptExe):
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pass
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else:
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log.message("WARNING. file "+self.scriptExe+" not found")
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sys.exit()
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## additional input files
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try:
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tmpAddFiles = string.split(cfg_params['USER.additional_input_files'],',')
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for tmp in tmpAddFiles:
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tmp=string.strip(tmp)
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self.additional_inbox_files.append(tmp)
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pass
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pass
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except KeyError:
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pass
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try:
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| 128 |
slacapra |
1.3 |
self.total_number_of_events = int(cfg_params['ORCA.total_number_of_events'])
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| 129 |
slacapra |
1.1 |
except KeyError:
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msg = 'Must define total_number_of_events and job_number_of_events'
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raise CrabException(msg)
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try:
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slacapra |
1.3 |
self.first_event = int(cfg_params['ORCA.first_event'])
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slacapra |
1.1 |
except KeyError:
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self.first_event = 0
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pass
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log.debug(6, "Orca_pubdb::Orca_pubdb(): total number of events = "+`self.total_number_of_events`)
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#log.debug(6, "Orca_pubdb::Orca_pubdb(): events per job = "+`self.job_number_of_events`)
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log.debug(6, "Orca_pubdb::Orca_pubdb(): first event = "+`self.first_event`)
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self.maxEvents=0 # max events available in any PubDB
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self.connectPubDB(cfg_params)
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# [-- self.checkNevJobs() --]
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self.TarBaller = TarBall.TarBall(self.executable, self.scram)
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self.tgzNameWithPath = self.TarBaller.prepareTarBall()
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try:
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self.ML = int(cfg_params['USER.activate_monalisa'])
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except KeyError:
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self.ML = 0
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pass
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self.setTaskid_()
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self.setParam_('taskId', self.cfg_params['taskId'])
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return
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| 161 |
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def split(self, jobParams):
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"""
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This method returns the list of specific job type items
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needed to run the jobs
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"""
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common.jobDB.load()
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njobs = self.total_number_of_jobs
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# create the empty structure
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for i in range(njobs):
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jobParams.append("")
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# fill the both the list and the DB (part of the code taken from jobsToDB)
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firstEvent = self.first_event
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lastJobsNumberOfEvents = self.job_number_of_events
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# last jobs is different...
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for job in range(njobs-1):
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jobParams[job] = [firstEvent, lastJobsNumberOfEvents]
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common.jobDB.setArguments(job, jobParams[job])
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firstEvent += self.job_number_of_events
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# this is the last job
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lastJobsNumberOfEvents = (self.total_number_of_events + self.first_event) - firstEvent
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status = common.jobDB.status(njobs - 1)
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jobParams[njobs - 1] = [firstEvent, lastJobsNumberOfEvents]
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common.jobDB.setArguments(njobs - 1, jobParams[njobs - 1])
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if (lastJobsNumberOfEvents!=self.job_number_of_events):
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common.logger.message(str(self.total_number_of_jobs-1)+' jobs will be created for '+str(self.job_number_of_events)+' events each plus 1 for '+str(lastJobsNumberOfEvents)+' events for a total of '+str(self.job_number_of_events*(self.total_number_of_jobs-1)+lastJobsNumberOfEvents)+' events')
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else:
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common.logger.message(str(self.total_number_of_jobs)+' jobs will be created for '+str(self.job_number_of_events)+' events each for a total of '+str(self.job_number_of_events*(self.total_number_of_jobs-1)+lastJobsNumberOfEvents)+' events')
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| 191 |
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| 192 |
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common.jobDB.save()
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return
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| 195 |
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def getJobTypeArguments(self, nj, sched):
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| 196 |
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params = common.jobDB.arguments(nj)
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| 198 |
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if sched=="EDG" or sched=="GRID":
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| 199 |
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parString = "" + str(params[0])+' '+str(params[1])
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elif sched=="BOSS":
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| 201 |
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parString = "" + str(params[0])+' '+str(params[1])
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| 202 |
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elif sched=="CONDOR":
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| 203 |
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parString = "" + str(params[0])+' '+str(params[1])+' '+common.analisys_common_info['sites'][0]
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else:
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return ""
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| 206 |
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return parString
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| 208 |
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def numberOfJobs(self):
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first_event = self.first_event
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maxAvailableEvents = int(self.maxEvents)
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common.logger.debug(1,"Available events: "+str(maxAvailableEvents))
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| 212 |
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| 213 |
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if first_event>=maxAvailableEvents:
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| 214 |
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raise CrabException('First event is bigger than maximum number of available events!')
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| 215 |
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| 216 |
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try:
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| 217 |
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n = self.total_number_of_events
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if n == 'all': n = '-1'
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| 219 |
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if n == '-1':
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| 220 |
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tot_num_events = (maxAvailableEvents - first_event)
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| 221 |
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common.logger.debug(1,"Analysing all available events "+str(tot_num_events))
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| 222 |
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else:
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| 223 |
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if maxAvailableEvents<(int(n)+ first_event): # + self.first_event):
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| 224 |
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raise CrabException('(First event + total events)='+str(int(n)+first_event)+' is bigger than maximum number of available events '+str(maxAvailableEvents)+' !! Use "total_number_of_events=-1" to analyze to whole dataset')
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| 225 |
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tot_num_events = int(n)
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| 226 |
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except KeyError:
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| 227 |
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common.logger.message("total_number_of_events not defined, set it to maximum available")
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| 228 |
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tot_num_events = (maxAvailableEvents - first_event)
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| 229 |
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pass
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| 230 |
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common.logger.message("Total number of events to be analyzed: "+str(self.total_number_of_events))
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| 231 |
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| 232 |
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| 233 |
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# read user directives
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| 234 |
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eventPerJob=0
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| 235 |
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try:
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| 236 |
slacapra |
1.3 |
eventPerJob = self.cfg_params['ORCA.job_number_of_events']
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| 237 |
slacapra |
1.1 |
except KeyError:
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| 238 |
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pass
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| 239 |
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| 240 |
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jobsPerTask=0
|
| 241 |
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try:
|
| 242 |
slacapra |
1.3 |
jobsPerTask = int(self.cfg_params['ORCA.total_number_of_jobs'])
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| 243 |
slacapra |
1.1 |
except KeyError:
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| 244 |
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pass
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| 245 |
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| 246 |
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# If both the above set, complain and use event per jobs
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| 247 |
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if eventPerJob>0 and jobsPerTask>0:
|
| 248 |
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msg = 'Warning. '
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| 249 |
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msg += 'job_number_of_events and total_number_of_jobs are both defined '
|
| 250 |
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msg += 'Using job_number_of_events.'
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| 251 |
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common.logger.message(msg)
|
| 252 |
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jobsPerTask = 0
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| 253 |
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if eventPerJob==0 and jobsPerTask==0:
|
| 254 |
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msg = 'Warning. '
|
| 255 |
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msg += 'job_number_of_events and total_number_of_jobs are not defined '
|
| 256 |
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msg += 'Creating just one job for all events.'
|
| 257 |
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common.logger.message(msg)
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| 258 |
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jobsPerTask = 1
|
| 259 |
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|
| 260 |
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# first case: events per job defined
|
| 261 |
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if eventPerJob>0:
|
| 262 |
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n=eventPerJob
|
| 263 |
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#if n == 'all' or n == '-1' or (int(n)>self.total_number_of_events and self.total_number_of_events>0):
|
| 264 |
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if n == 'all' or n == '-1' or (int(n)>tot_num_events and tot_num_events>0):
|
| 265 |
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common.logger.message("Asking more events than available: set it to maximum available")
|
| 266 |
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job_num_events = tot_num_events
|
| 267 |
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tot_num_jobs = 1
|
| 268 |
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else:
|
| 269 |
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job_num_events = int(n)
|
| 270 |
|
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tot_num_jobs = int((tot_num_events-1)/job_num_events)+1
|
| 271 |
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|
| 272 |
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elif jobsPerTask>0:
|
| 273 |
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common.logger.debug(2,"total number of events: "+str(tot_num_events)+" JobPerTask "+str(jobsPerTask))
|
| 274 |
|
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job_num_events = int(math.floor((tot_num_events)/jobsPerTask))
|
| 275 |
|
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tot_num_jobs = jobsPerTask
|
| 276 |
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|
| 277 |
|
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# should not happen...
|
| 278 |
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else:
|
| 279 |
|
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raise CrabException('Something wrong with splitting')
|
| 280 |
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|
| 281 |
|
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common.logger.debug(2,"total number of events: "+str(tot_num_events)+" events per job: "+str(job_num_events))
|
| 282 |
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|
| 283 |
|
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#used by jobsToDB for logs
|
| 284 |
|
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self.job_number_of_events = job_num_events
|
| 285 |
|
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self.total_number_of_jobs = tot_num_jobs
|
| 286 |
|
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return tot_num_jobs
|
| 287 |
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|
| 288 |
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|
| 289 |
|
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def jobsToDB(self, nJobs):
|
| 290 |
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"""
|
| 291 |
|
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Fill the DB with proper entries for ORCA-DBS-DLS
|
| 292 |
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"""
|
| 293 |
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|
| 294 |
|
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firstEvent = self.first_event
|
| 295 |
|
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lastJobsNumberOfEvents = self.job_number_of_events
|
| 296 |
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|
| 297 |
|
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# last jobs is different...
|
| 298 |
|
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for job in range(nJobs-1):
|
| 299 |
|
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common.jobDB.setFirstEvent(job, firstEvent)
|
| 300 |
|
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common.jobDB.setMaxEvents(job, self.job_number_of_events)
|
| 301 |
|
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firstEvent=firstEvent+self.job_number_of_events
|
| 302 |
|
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|
| 303 |
|
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# this is the last job
|
| 304 |
|
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common.jobDB.setFirstEvent(nJobs-1, firstEvent)
|
| 305 |
|
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lastJobsNumberOfEvents= (self.total_number_of_events+self.first_event)-firstEvent
|
| 306 |
|
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common.jobDB.setMaxEvents(nJobs-1, lastJobsNumberOfEvents)
|
| 307 |
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|
| 308 |
|
|
if (lastJobsNumberOfEvents!=self.job_number_of_events):
|
| 309 |
|
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common.logger.message(str(self.total_number_of_jobs-1)+' jobs will be created for '+str(self.job_number_of_events)+' events each plus 1 for '+str(lastJobsNumberOfEvents)+' events for a total of '+str(self.job_number_of_events*(self.total_number_of_jobs-1)+lastJobsNumberOfEvents)+' events')
|
| 310 |
|
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else:
|
| 311 |
|
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common.logger.message(str(self.total_number_of_jobs)+' jobs will be created for '+str(self.job_number_of_events)+' events each for a total of '+str(self.job_number_of_events*(self.total_number_of_jobs-1)+lastJobsNumberOfEvents)+' events')
|
| 312 |
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|
| 313 |
|
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return
|
| 314 |
|
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|
| 315 |
|
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|
| 316 |
|
|
def wsSetupEnvironment(self, nj):
|
| 317 |
|
|
"""
|
| 318 |
|
|
Returns part of a job script which prepares
|
| 319 |
|
|
the execution environment for the job 'nj'.
|
| 320 |
|
|
"""
|
| 321 |
|
|
|
| 322 |
|
|
# Prepare JobType-independent part
|
| 323 |
|
|
txt = ''
|
| 324 |
|
|
|
| 325 |
|
|
## OLI_Daniele at this level middleware already known
|
| 326 |
|
|
|
| 327 |
|
|
txt += 'if [ $middleware == LCG ]; then \n'
|
| 328 |
|
|
txt += self.wsSetupCMSLCGEnvironment_()
|
| 329 |
|
|
txt += 'elif [ $middleware == OSG ]; then\n'
|
| 330 |
|
|
txt += ' time=`date -u +"%s"`\n'
|
| 331 |
|
|
txt += ' WORKING_DIR=$OSG_WN_TMP/cms_$time\n'
|
| 332 |
|
|
txt += ' echo "Creating working directory: $WORKING_DIR"\n'
|
| 333 |
|
|
txt += ' /bin/mkdir -p $WORKING_DIR\n'
|
| 334 |
|
|
txt += ' if [ ! -d $WORKING_DIR ] ;then\n'
|
| 335 |
|
|
txt += ' echo "SET_CMS_ENV 10016 ==> OSG $WORKING_DIR could not be created on WN `hostname`"\n'
|
| 336 |
|
|
txt += ' echo "JOB_EXIT_STATUS = 10016"\n'
|
| 337 |
|
|
txt += ' echo "JobExitCode=10016" | tee -a $RUNTIME_AREA/$repo\n'
|
| 338 |
|
|
txt += ' dumpStatus $RUNTIME_AREA/$repo\n'
|
| 339 |
gutsche |
1.4 |
txt += ' rm -f $RUNTIME_AREA/$repo \n'
|
| 340 |
|
|
txt += ' echo "MonitorJobID=`echo $MonitorJobID`" | tee -a $RUNTIME_AREA/$repo \n'
|
| 341 |
|
|
txt += ' echo "MonitorID=`echo $MonitorID`" | tee -a $RUNTIME_AREA/$repo\n'
|
| 342 |
slacapra |
1.1 |
txt += ' exit 1\n'
|
| 343 |
|
|
txt += ' fi\n'
|
| 344 |
|
|
txt += '\n'
|
| 345 |
|
|
txt += ' echo "Change to working directory: $WORKING_DIR"\n'
|
| 346 |
|
|
txt += ' cd $WORKING_DIR\n'
|
| 347 |
|
|
txt += self.wsSetupCMSOSGEnvironment_()
|
| 348 |
|
|
txt += 'fi\n'
|
| 349 |
|
|
|
| 350 |
|
|
# Prepare JobType-specific part
|
| 351 |
|
|
scram = self.scram.commandName()
|
| 352 |
|
|
txt += '\n\n'
|
| 353 |
|
|
txt += 'echo "### SPECIFIC JOB SETUP ENVIRONMENT ###"\n'
|
| 354 |
|
|
txt += scram+' project ORCA '+self.version+'\n'
|
| 355 |
|
|
txt += 'status=$?\n'
|
| 356 |
|
|
txt += 'if [ $status != 0 ] ; then\n'
|
| 357 |
|
|
txt += ' echo "SET_EXE_ENV 10034 ==>ERROR ORCA '+self.version+' not found on `hostname`" \n'
|
| 358 |
|
|
txt += ' echo "JOB_EXIT_STATUS = 10034"\n'
|
| 359 |
|
|
txt += ' echo "JobExitCode=10034" | tee -a $RUNTIME_AREA/$repo\n'
|
| 360 |
|
|
txt += ' dumpStatus $RUNTIME_AREA/$repo\n'
|
| 361 |
gutsche |
1.4 |
txt += ' rm -f $RUNTIME_AREA/$repo \n'
|
| 362 |
|
|
txt += ' echo "MonitorJobID=`echo $MonitorJobID`" | tee -a $RUNTIME_AREA/$repo \n'
|
| 363 |
|
|
txt += ' echo "MonitorID=`echo $MonitorID`" | tee -a $RUNTIME_AREA/$repo\n'
|
| 364 |
slacapra |
1.1 |
|
| 365 |
|
|
## OLI_Daniele
|
| 366 |
|
|
txt += ' if [ $middleware == OSG ]; then \n'
|
| 367 |
|
|
txt += ' \n'
|
| 368 |
|
|
txt += ' echo "Remove working directory: $WORKING_DIR"\n'
|
| 369 |
|
|
txt += ' cd $RUNTIME_AREA\n'
|
| 370 |
|
|
txt += ' /bin/rm -rf $WORKING_DIR\n'
|
| 371 |
|
|
txt += ' if [ -d $WORKING_DIR ] ;then\n'
|
| 372 |
gutsche |
1.4 |
txt += ' echo "SET_CMS_ENV 10018 ==> OSG $WORKING_DIR could not be deleted on WN `hostname` after ORCA not found on `hostname`"\n'
|
| 373 |
slacapra |
1.1 |
txt += ' echo "JOB_EXIT_STATUS = 10018"\n'
|
| 374 |
|
|
txt += ' echo "JobExitCode=10018" | tee -a $RUNTIME_AREA/$repo\n'
|
| 375 |
|
|
txt += ' dumpStatus $RUNTIME_AREA/$repo\n'
|
| 376 |
gutsche |
1.4 |
txt += ' rm -f $RUNTIME_AREA/$repo \n'
|
| 377 |
|
|
txt += ' echo "MonitorJobID=`echo $MonitorJobID`" | tee -a $RUNTIME_AREA/$repo \n'
|
| 378 |
|
|
txt += ' echo "MonitorID=`echo $MonitorID`" | tee -a $RUNTIME_AREA/$repo\n'
|
| 379 |
slacapra |
1.1 |
txt += ' fi\n'
|
| 380 |
|
|
txt += ' fi \n'
|
| 381 |
|
|
txt += ' \n'
|
| 382 |
|
|
txt += ' exit 1\n'
|
| 383 |
|
|
txt += 'fi \n'
|
| 384 |
|
|
txt += 'echo "ORCA_VERSION = '+self.version+'"\n'
|
| 385 |
|
|
txt += 'cd '+self.version+'\n'
|
| 386 |
|
|
### needed grep for bug in scramv1 ###
|
| 387 |
|
|
|
| 388 |
|
|
#txt += 'eval `'+scram+' runtime -sh | grep -v SCRAMRT_LSB_JOBNAME`\n'
|
| 389 |
|
|
|
| 390 |
|
|
# Handle the arguments:
|
| 391 |
|
|
txt += "\n"
|
| 392 |
|
|
txt += "## ARGUMNETS: $1 Job Number\n"
|
| 393 |
|
|
txt += "## ARGUMNETS: $2 First Event for this job\n"
|
| 394 |
|
|
txt += "## ARGUMNETS: $3 Max Event for this job\n"
|
| 395 |
|
|
txt += "\n"
|
| 396 |
|
|
txt += "narg=$#\n"
|
| 397 |
|
|
txt += "NJob=$1\n"
|
| 398 |
|
|
txt += "FirstEvent=$2\n"
|
| 399 |
|
|
txt += "MaxEvents=$3\n"
|
| 400 |
|
|
txt += "if [ $narg -lt 3 ]\n"
|
| 401 |
|
|
txt += "then\n"
|
| 402 |
|
|
txt += " echo 'SET_EXE_ENV 50113 ==> ERROR Too few arguments' +$narg+ \n"
|
| 403 |
|
|
txt += ' echo "JOB_EXIT_STATUS = 50113"\n'
|
| 404 |
|
|
txt += ' echo "JobExitCode=50113" | tee -a $RUNTIME_AREA/$repo\n'
|
| 405 |
|
|
txt += ' dumpStatus $RUNTIME_AREA/$repo\n'
|
| 406 |
gutsche |
1.4 |
txt += ' rm -f $RUNTIME_AREA/$repo \n'
|
| 407 |
|
|
txt += ' echo "MonitorJobID=`echo $MonitorJobID`" | tee -a $RUNTIME_AREA/$repo \n'
|
| 408 |
|
|
txt += ' echo "MonitorID=`echo $MonitorID`" | tee -a $RUNTIME_AREA/$repo\n'
|
| 409 |
slacapra |
1.1 |
|
| 410 |
|
|
## OLI_Daniele
|
| 411 |
|
|
txt += ' if [ $middleware == OSG ]; then \n'
|
| 412 |
|
|
txt += ' echo "Remove working directory: $WORKING_DIR"\n'
|
| 413 |
|
|
txt += ' cd $RUNTIME_AREA\n'
|
| 414 |
|
|
txt += ' /bin/rm -rf $WORKING_DIR\n'
|
| 415 |
|
|
txt += ' if [ -d $WORKING_DIR ] ;then\n'
|
| 416 |
|
|
txt += ' echo "SET_EXE_ENV 50114 ==> OSG $WORKING_DIR could not be deleted on WN `hostname` after Too few arguments for CRAB job wrapper"\n'
|
| 417 |
|
|
txt += ' echo "JOB_EXIT_STATUS = 50114"\n'
|
| 418 |
|
|
txt += ' echo "JobExitCode=50114" | tee -a $RUNTIME_AREA/$repo\n'
|
| 419 |
|
|
txt += ' dumpStatus $RUNTIME_AREA/$repo\n'
|
| 420 |
gutsche |
1.4 |
txt += ' rm -f $RUNTIME_AREA/$repo \n'
|
| 421 |
|
|
txt += ' echo "MonitorJobID=`echo $MonitorJobID`" | tee -a $RUNTIME_AREA/$repo \n'
|
| 422 |
|
|
txt += ' echo "MonitorID=`echo $MonitorID`" | tee -a $RUNTIME_AREA/$repo\n'
|
| 423 |
slacapra |
1.1 |
txt += ' fi\n'
|
| 424 |
|
|
txt += ' fi \n'
|
| 425 |
|
|
txt += ' \n'
|
| 426 |
|
|
txt += " exit 1\n"
|
| 427 |
|
|
txt += "fi\n"
|
| 428 |
|
|
txt += "\n"
|
| 429 |
|
|
|
| 430 |
|
|
# Prepare job-specific part
|
| 431 |
|
|
job = common.job_list[nj]
|
| 432 |
|
|
orcarc = os.path.basename(job.configFilename())
|
| 433 |
|
|
txt += '\n'
|
| 434 |
|
|
txt += 'cp $RUNTIME_AREA/'+orcarc+' .orcarc\n'
|
| 435 |
|
|
txt += 'if [ -e $RUNTIME_AREA/orcarc_$CE ] ; then\n'
|
| 436 |
|
|
txt += ' cat $RUNTIME_AREA/orcarc_$CE .orcarc >> .orcarc_tmp\n'
|
| 437 |
|
|
txt += ' mv .orcarc_tmp .orcarc\n'
|
| 438 |
|
|
txt += 'fi\n'
|
| 439 |
|
|
txt += 'if [ -e $RUNTIME_AREA/init_$CE.sh ] ; then\n'
|
| 440 |
|
|
txt += ' cp $RUNTIME_AREA/init_$CE.sh init.sh\n'
|
| 441 |
|
|
txt += 'fi\n'
|
| 442 |
|
|
|
| 443 |
|
|
if len(self.additional_inbox_files) > 0:
|
| 444 |
|
|
for file in self.additional_inbox_files:
|
| 445 |
|
|
file = os.path.basename(file)
|
| 446 |
|
|
txt += 'if [ -e $RUNTIME_AREA/'+file+' ] ; then\n'
|
| 447 |
|
|
txt += ' cp $RUNTIME_AREA/'+file+' .\n'
|
| 448 |
|
|
txt += ' chmod +x '+file+'\n'
|
| 449 |
|
|
txt += 'fi\n'
|
| 450 |
|
|
pass
|
| 451 |
|
|
|
| 452 |
|
|
txt += '\n'
|
| 453 |
|
|
txt += 'chmod +x ./init.sh\n'
|
| 454 |
|
|
txt += './init.sh\n'
|
| 455 |
|
|
txt += 'exitStatus=$?\n'
|
| 456 |
|
|
txt += 'if [ $exitStatus != 0 ] ; then\n'
|
| 457 |
|
|
txt += ' echo "SET_EXE_ENV 20001 ==> ERROR StageIn init script failed"\n'
|
| 458 |
|
|
txt += ' echo "JOB_EXIT_STATUS = $exitStatus" \n'
|
| 459 |
|
|
txt += ' echo "JobExitCode=20001" | tee -a $RUNTIME_AREA/$repo\n'
|
| 460 |
|
|
txt += ' dumpStatus $RUNTIME_AREA/$repo\n'
|
| 461 |
gutsche |
1.4 |
txt += ' rm -f $RUNTIME_AREA/$repo \n'
|
| 462 |
|
|
txt += ' echo "MonitorJobID=`echo $MonitorJobID`" | tee -a $RUNTIME_AREA/$repo \n'
|
| 463 |
|
|
txt += ' echo "MonitorID=`echo $MonitorID`" | tee -a $RUNTIME_AREA/$repo\n'
|
| 464 |
slacapra |
1.1 |
|
| 465 |
|
|
### OLI_DANIELE
|
| 466 |
|
|
txt += ' if [ $middleware == OSG ]; then \n'
|
| 467 |
|
|
txt += ' echo "Remove working directory: $WORKING_DIR"\n'
|
| 468 |
|
|
txt += ' cd $RUNTIME_AREA\n'
|
| 469 |
|
|
txt += ' /bin/rm -rf $WORKING_DIR\n'
|
| 470 |
|
|
txt += ' if [ -d $WORKING_DIR ] ;then\n'
|
| 471 |
|
|
txt += ' echo "SET_EXE 10012 ==> OSG $WORKING_DIR could not be deleted on WN `hostname` after StageIn init script failed"\n'
|
| 472 |
|
|
txt += ' echo "JOB_EXIT_STATUS = 10012"\n'
|
| 473 |
|
|
txt += ' echo "JobExitCode=10012" | tee -a $RUNTIME_AREA/$repo\n'
|
| 474 |
|
|
txt += ' dumpStatus $RUNTIME_AREA/$repo\n'
|
| 475 |
gutsche |
1.4 |
txt += ' rm -f $RUNTIME_AREA/$repo \n'
|
| 476 |
|
|
txt += ' echo "MonitorJobID=`echo $MonitorJobID`" | tee -a $RUNTIME_AREA/$repo \n'
|
| 477 |
|
|
txt += ' echo "MonitorID=`echo $MonitorID`" | tee -a $RUNTIME_AREA/$repo\n'
|
| 478 |
slacapra |
1.1 |
txt += ' fi\n'
|
| 479 |
|
|
txt += ' fi \n'
|
| 480 |
|
|
txt += ' exit 1\n'
|
| 481 |
|
|
txt += 'fi\n'
|
| 482 |
|
|
txt += "echo 'SET_EXE_ENV 0 ==> job setup ok'\n"
|
| 483 |
|
|
txt += 'echo "### END JOB SETUP ENVIRONMENT ###"\n\n'
|
| 484 |
|
|
|
| 485 |
|
|
txt += 'echo "FirstEvent=$FirstEvent" >> .orcarc\n'
|
| 486 |
|
|
txt += 'echo "MaxEvents=$MaxEvents" >> .orcarc\n'
|
| 487 |
|
|
if self.ML:
|
| 488 |
|
|
txt += 'echo "MonalisaJobId=$NJob" >> .orcarc\n'
|
| 489 |
|
|
|
| 490 |
|
|
txt += '\n'
|
| 491 |
|
|
txt += 'echo "***** cat .orcarc *********"\n'
|
| 492 |
|
|
txt += 'cat .orcarc\n'
|
| 493 |
|
|
txt += 'echo "****** end .orcarc ********"\n'
|
| 494 |
|
|
return txt
|
| 495 |
|
|
|
| 496 |
|
|
def wsBuildExe(self, nj):
|
| 497 |
|
|
"""
|
| 498 |
|
|
Put in the script the commands to build an executable
|
| 499 |
|
|
or a library.
|
| 500 |
|
|
"""
|
| 501 |
|
|
|
| 502 |
|
|
txt = ""
|
| 503 |
|
|
|
| 504 |
|
|
if os.path.isfile(self.tgzNameWithPath):
|
| 505 |
|
|
txt += 'echo "tar xzvf $RUNTIME_AREA/'+os.path.basename(self.tgzNameWithPath)+'"\n'
|
| 506 |
|
|
txt += 'tar xzvf $RUNTIME_AREA/'+os.path.basename(self.tgzNameWithPath)+'\n'
|
| 507 |
|
|
txt += 'untar_status=$? \n'
|
| 508 |
|
|
txt += 'if [ $untar_status -ne 0 ]; then \n'
|
| 509 |
|
|
txt += ' echo "SET_EXE 1 ==> ERROR Untarring .tgz file failed"\n'
|
| 510 |
|
|
txt += ' echo "JOB_EXIT_STATUS = $untar_status" \n'
|
| 511 |
|
|
txt += ' echo "JobExitCode=$untar_status" | tee -a $repo\n'
|
| 512 |
|
|
|
| 513 |
|
|
### OLI_DANIELE
|
| 514 |
|
|
txt += ' if [ $middleware == OSG ]; then \n'
|
| 515 |
|
|
txt += ' echo "Remove working directory: $WORKING_DIR"\n'
|
| 516 |
|
|
txt += ' cd $RUNTIME_AREA\n'
|
| 517 |
|
|
txt += ' /bin/rm -rf $WORKING_DIR\n'
|
| 518 |
|
|
txt += ' if [ -d $WORKING_DIR ] ;then\n'
|
| 519 |
|
|
txt += ' echo "SET_EXE 50999 ==> OSG $WORKING_DIR could not be deleted on WN `hostname` after Untarring .tgz file failed"\n'
|
| 520 |
|
|
txt += ' echo "JOB_EXIT_STATUS = 50999"\n'
|
| 521 |
|
|
txt += ' echo "JobExitCode=50999" | tee -a $RUNTIME_AREA/$repo\n'
|
| 522 |
|
|
txt += ' dumpStatus $RUNTIME_AREA/$repo\n'
|
| 523 |
gutsche |
1.4 |
txt += ' rm -f $RUNTIME_AREA/$repo \n'
|
| 524 |
|
|
txt += ' echo "MonitorJobID=`echo $MonitorJobID`" | tee -a $RUNTIME_AREA/$repo \n'
|
| 525 |
|
|
txt += ' echo "MonitorID=`echo $MonitorID`" | tee -a $RUNTIME_AREA/$repo\n'
|
| 526 |
slacapra |
1.1 |
txt += ' fi\n'
|
| 527 |
|
|
txt += ' fi \n'
|
| 528 |
|
|
txt += ' \n'
|
| 529 |
|
|
txt += ' exit 1 \n'
|
| 530 |
|
|
txt += 'else \n'
|
| 531 |
|
|
txt += ' echo "Successful untar" \n'
|
| 532 |
|
|
txt += 'fi \n'
|
| 533 |
|
|
# TODO: what does this code do here ?
|
| 534 |
|
|
# SL check that lib/Linux__... is present
|
| 535 |
|
|
txt += 'mkdir -p lib/${SCRAM_ARCH} \n'
|
| 536 |
|
|
pass
|
| 537 |
|
|
txt += 'eval `'+self.scram.commandName()+' runtime -sh |grep -v SCRAMRT_LSB_JOBNAME`'+'\n'
|
| 538 |
|
|
|
| 539 |
|
|
return txt
|
| 540 |
|
|
|
| 541 |
|
|
def wsRenameOutput(self, nj):
|
| 542 |
|
|
"""
|
| 543 |
|
|
Returns part of a job script which renames the produced files.
|
| 544 |
|
|
"""
|
| 545 |
|
|
|
| 546 |
|
|
txt = '\n'
|
| 547 |
|
|
txt += '# directory content\n'
|
| 548 |
|
|
txt += 'ls \n'
|
| 549 |
|
|
file_list = ''
|
| 550 |
|
|
for fileWithSuffix in self.output_file:
|
| 551 |
|
|
output_file_num = self.numberFile_(fileWithSuffix, '$NJob')
|
| 552 |
|
|
file_list=file_list+output_file_num+' '
|
| 553 |
|
|
txt += '\n'
|
| 554 |
|
|
txt += 'ls '+fileWithSuffix+'\n'
|
| 555 |
|
|
txt += 'exe_result=$?\n'
|
| 556 |
|
|
txt += 'if [ $exe_result -ne 0 ] ; then\n'
|
| 557 |
|
|
txt += ' echo "ERROR: No output file to manage"\n'
|
| 558 |
|
|
txt += ' echo "JOB_EXIT_STATUS = $exe_result"\n'
|
| 559 |
|
|
txt += ' echo "JobExitCode=60302" | tee -a $RUNTIME_AREA/$repo\n'
|
| 560 |
|
|
txt += ' dumpStatus $RUNTIME_AREA/$repo\n'
|
| 561 |
gutsche |
1.4 |
txt += ' rm -f $RUNTIME_AREA/$repo \n'
|
| 562 |
|
|
txt += ' echo "MonitorJobID=`echo $MonitorJobID`" | tee -a $RUNTIME_AREA/$repo \n'
|
| 563 |
|
|
txt += ' echo "MonitorID=`echo $MonitorID`" | tee -a $RUNTIME_AREA/$repo\n'
|
| 564 |
|
|
|
| 565 |
slacapra |
1.1 |
### OLI_DANIELE
|
| 566 |
|
|
if common.scheduler.boss_scheduler_name == 'condor_g':
|
| 567 |
|
|
txt += ' if [ $middleware == OSG ]; then \n'
|
| 568 |
|
|
txt += ' echo "prepare dummy output file"\n'
|
| 569 |
|
|
txt += ' echo "Processing of job output failed" > $RUNTIME_AREA/'+output_file_num+'\n'
|
| 570 |
|
|
txt += ' fi \n'
|
| 571 |
|
|
txt += 'else\n'
|
| 572 |
|
|
txt += ' cp '+fileWithSuffix+' $RUNTIME_AREA/'+output_file_num+'\n'
|
| 573 |
|
|
txt += 'fi\n'
|
| 574 |
|
|
|
| 575 |
|
|
pass
|
| 576 |
|
|
|
| 577 |
|
|
|
| 578 |
|
|
txt += 'cd $RUNTIME_AREA\n'
|
| 579 |
|
|
file_list=file_list[:-1]
|
| 580 |
|
|
txt += 'file_list="'+file_list+'"\n'
|
| 581 |
|
|
### OLI_DANIELE
|
| 582 |
|
|
txt += 'if [ $middleware == OSG ]; then\n'
|
| 583 |
|
|
txt += ' cd $RUNTIME_AREA\n'
|
| 584 |
|
|
txt += ' echo "Remove working directory: $WORKING_DIR"\n'
|
| 585 |
|
|
txt += ' /bin/rm -rf $WORKING_DIR\n'
|
| 586 |
|
|
txt += ' if [ -d $WORKING_DIR ] ;then\n'
|
| 587 |
|
|
txt += ' echo "SET_EXE 60999 ==> OSG $WORKING_DIR could not be deleted on WN `hostname` after cleanup of WN"\n'
|
| 588 |
|
|
txt += ' echo "JOB_EXIT_STATUS = 60999"\n'
|
| 589 |
|
|
txt += ' echo "JobExitCode=60999" | tee -a $RUNTIME_AREA/$repo\n'
|
| 590 |
|
|
txt += ' dumpStatus $RUNTIME_AREA/$repo\n'
|
| 591 |
gutsche |
1.4 |
txt += ' rm -f $RUNTIME_AREA/$repo \n'
|
| 592 |
|
|
txt += ' echo "MonitorJobID=`echo $MonitorJobID`" | tee -a $RUNTIME_AREA/$repo \n'
|
| 593 |
|
|
txt += ' echo "MonitorID=`echo $MonitorID`" | tee -a $RUNTIME_AREA/$repo\n'
|
| 594 |
slacapra |
1.1 |
txt += ' fi\n'
|
| 595 |
|
|
txt += 'fi\n'
|
| 596 |
|
|
txt += '\n'
|
| 597 |
|
|
|
| 598 |
|
|
return txt
|
| 599 |
|
|
|
| 600 |
|
|
def executableName(self):
|
| 601 |
|
|
if self.scriptExe != '':
|
| 602 |
|
|
return "./" + os.path.basename(self.scriptExe)
|
| 603 |
|
|
else:
|
| 604 |
|
|
return self.executable
|
| 605 |
|
|
|
| 606 |
|
|
def connectPubDB(self, cfg_params):
|
| 607 |
|
|
|
| 608 |
|
|
fun = "Orca_pubdb::connectPubDB()"
|
| 609 |
|
|
|
| 610 |
|
|
self.allOrcarcs = []
|
| 611 |
|
|
# first check if the info from PubDB have been already processed
|
| 612 |
|
|
if os.path.exists(common.work_space.shareDir()+'PubDBSummaryFile') :
|
| 613 |
|
|
common.logger.debug(6, fun+": info from PubDB has been already processed -- use it")
|
| 614 |
|
|
f = open( common.work_space.shareDir()+'PubDBSummaryFile', 'r' )
|
| 615 |
|
|
for i in f.readlines():
|
| 616 |
|
|
a=string.split(i,' ')
|
| 617 |
|
|
self.allOrcarcs.append(orcarcBuilderOld.constructFromFile(a[0:-1]))
|
| 618 |
|
|
pass
|
| 619 |
|
|
for o in self.allOrcarcs:
|
| 620 |
|
|
# o.dump()
|
| 621 |
|
|
if o.Nevents >= self.maxEvents:
|
| 622 |
|
|
self.maxEvents= o.Nevents
|
| 623 |
|
|
pass
|
| 624 |
|
|
pass
|
| 625 |
|
|
pass
|
| 626 |
|
|
|
| 627 |
|
|
else: # PubDB never queried
|
| 628 |
|
|
common.logger.debug(6, fun+": PubDB was never queried -- do it")
|
| 629 |
|
|
# New PubDB class by SL
|
| 630 |
|
|
try:
|
| 631 |
|
|
self.pubdb = PubDB.PubDB(self.owner,
|
| 632 |
|
|
self.dataset,
|
| 633 |
|
|
self.dataTiers,
|
| 634 |
|
|
cfg_params)
|
| 635 |
|
|
except PubDB.RefDBmapError:
|
| 636 |
|
|
msg = 'ERROR ***: accessing PubDB'
|
| 637 |
|
|
raise CrabException(msg)
|
| 638 |
|
|
|
| 639 |
|
|
## extract info from pubDB (grouped by PubDB version :
|
| 640 |
|
|
## pubDBData contains a list of info for the new-style PubDBs,
|
| 641 |
|
|
## and a list of info for the old-style PubDBs )
|
| 642 |
|
|
self.pubDBData = self.pubdb.getAllPubDBData()
|
| 643 |
|
|
|
| 644 |
|
|
## check and exit if no data are published in any PubDB
|
| 645 |
|
|
nodata=1
|
| 646 |
|
|
for PubDBversion in self.pubDBData.keys():
|
| 647 |
|
|
if len(self.pubDBData[PubDBversion])>0:
|
| 648 |
|
|
nodata=0
|
| 649 |
|
|
if (nodata):
|
| 650 |
|
|
msg = 'Owner '+self.owner+' Dataset '+ self.dataset+ ' not published in any PubDB with asked dataTiers '+string.join(self.dataTiers,'-')+' ! '
|
| 651 |
|
|
raise CrabException(msg)
|
| 652 |
|
|
|
| 653 |
|
|
## logging PubDB content for debugging
|
| 654 |
|
|
for PubDBversion in self.pubDBData.keys():
|
| 655 |
|
|
common.logger.debug(6, fun+": PubDB "+PubDBversion+" info ("+`len(self.pubDBData[PubDBversion])`+"):\/")
|
| 656 |
|
|
for aa in self.pubDBData[PubDBversion]:
|
| 657 |
|
|
common.logger.debug(6, "---------- start of a PubDB")
|
| 658 |
|
|
for bb in aa:
|
| 659 |
|
|
if common.logger.debugLevel() >= 6 :
|
| 660 |
|
|
common.logger.debug(6, str(bb.dump()))
|
| 661 |
|
|
pass
|
| 662 |
|
|
pass
|
| 663 |
|
|
common.logger.debug(6, "----------- end of a PubDB")
|
| 664 |
|
|
common.logger.debug(6, fun+": End of PubDB "+PubDBversion+" info\n")
|
| 665 |
|
|
|
| 666 |
|
|
|
| 667 |
|
|
## building orcarc : switch between info from old and new-style PubDB
|
| 668 |
|
|
currDir = os.getcwd()
|
| 669 |
|
|
os.chdir(common.work_space.jobDir())
|
| 670 |
|
|
|
| 671 |
|
|
tmpOrcarcList=[]
|
| 672 |
|
|
for PubDBversion in self.pubDBData.keys():
|
| 673 |
|
|
if len(self.pubDBData[PubDBversion])>0 :
|
| 674 |
|
|
#print (" PubDB-style : %s"%(PubDBversion))
|
| 675 |
|
|
if PubDBversion=='newPubDB' :
|
| 676 |
|
|
self.builder = orcarcBuilder.orcarcBuilder(cfg_params)
|
| 677 |
|
|
else :
|
| 678 |
|
|
self.builder = orcarcBuilderOld.orcarcBuilderOld()
|
| 679 |
|
|
tmpAllOrcarcs = self.builder.createOrcarcAndInit(self.pubDBData[PubDBversion])
|
| 680 |
|
|
tmpOrcarcList.append(tmpAllOrcarcs)
|
| 681 |
|
|
#print 'version ',PubDBversion,' tmpAllOrcarcs ', tmpAllOrcarcs
|
| 682 |
|
|
|
| 683 |
|
|
#print tmpOrcarcList
|
| 684 |
|
|
os.chdir(currDir)
|
| 685 |
|
|
|
| 686 |
|
|
self.maxEvents=0
|
| 687 |
|
|
for tmpAllOrcarcs in tmpOrcarcList:
|
| 688 |
|
|
for o in tmpAllOrcarcs:
|
| 689 |
|
|
numEvReq=self.total_number_of_events
|
| 690 |
|
|
if ((numEvReq == '-1') | (numEvReq <= o.Nevents)):
|
| 691 |
|
|
self.allOrcarcs.append(o)
|
| 692 |
|
|
if (int(o.Nevents) >= self.maxEvents):
|
| 693 |
|
|
self.maxEvents= int(o.Nevents)
|
| 694 |
|
|
pass
|
| 695 |
|
|
pass
|
| 696 |
|
|
pass
|
| 697 |
|
|
|
| 698 |
|
|
# set maximum number of event available
|
| 699 |
|
|
|
| 700 |
|
|
# I save to a file self.allOrcarcs
|
| 701 |
|
|
|
| 702 |
|
|
PubDBSummaryFile = open(common.work_space.shareDir()+'PubDBSummaryFile','w')
|
| 703 |
|
|
for o in self.allOrcarcs:
|
| 704 |
|
|
for d in o.content():
|
| 705 |
|
|
PubDBSummaryFile.write(d)
|
| 706 |
|
|
PubDBSummaryFile.write(' ')
|
| 707 |
|
|
pass
|
| 708 |
|
|
PubDBSummaryFile.write('\n')
|
| 709 |
|
|
pass
|
| 710 |
|
|
PubDBSummaryFile.close()
|
| 711 |
|
|
### fede
|
| 712 |
|
|
#for o in self.allOrcarcs:
|
| 713 |
|
|
# o.dump()
|
| 714 |
|
|
pass
|
| 715 |
|
|
|
| 716 |
|
|
# build a list of sites
|
| 717 |
|
|
ces= []
|
| 718 |
|
|
for o in self.allOrcarcs:
|
| 719 |
|
|
ces.append(o.CE)
|
| 720 |
|
|
pass
|
| 721 |
|
|
|
| 722 |
|
|
if len(ces)==0:
|
| 723 |
|
|
msg = 'No PubDBs publish correct catalogs or enough events! '
|
| 724 |
|
|
msg += `self.total_number_of_events`
|
| 725 |
|
|
raise CrabException(msg)
|
| 726 |
|
|
|
| 727 |
|
|
common.logger.debug(6, "List of CEs: "+str(ces))
|
| 728 |
|
|
common.analisys_common_info['sites'] = ces
|
| 729 |
|
|
self.setParam_('TargetCE', ','.join(ces))
|
| 730 |
|
|
|
| 731 |
|
|
return
|
| 732 |
|
|
|
| 733 |
|
|
def nJobs(self):
|
| 734 |
|
|
# TODO: should not be here !
|
| 735 |
|
|
# JobType should have no internal knowledge about submitted jobs
|
| 736 |
|
|
# One possibility is to use len(common.job_list).
|
| 737 |
|
|
""" return the number of job to be created """
|
| 738 |
|
|
return len(common.job_list)
|
| 739 |
|
|
|
| 740 |
|
|
def prepareSteeringCards(self):
|
| 741 |
|
|
"""
|
| 742 |
|
|
modify the orcarc card provided by the user,
|
| 743 |
|
|
writing a new card into share dir
|
| 744 |
|
|
"""
|
| 745 |
|
|
infile = ''
|
| 746 |
|
|
try:
|
| 747 |
|
|
infile = open(self.orcarc_file,'r')
|
| 748 |
|
|
except:
|
| 749 |
|
|
self.orcarc_file = 'empty.orcarc'
|
| 750 |
|
|
cmd='touch '+self.orcarc_file
|
| 751 |
|
|
runCommand(cmd)
|
| 752 |
|
|
infile = open(self.orcarc_file,'r')
|
| 753 |
|
|
|
| 754 |
|
|
outfile = open(common.work_space.jobDir()+self.name()+'.orcarc', 'w')
|
| 755 |
|
|
|
| 756 |
|
|
inline=infile.readlines()
|
| 757 |
|
|
### remove from user card these lines ###
|
| 758 |
|
|
wordRemove=['InputFileCatalogURL', 'InputCollections', 'FirstEvent', 'MaxEvents', 'TFileAdaptor', 'MonRecAlisaBuilder']
|
| 759 |
|
|
for line in inline:
|
| 760 |
|
|
word = string.strip(string.split(line,'=')[0])
|
| 761 |
|
|
|
| 762 |
|
|
if word not in wordRemove:
|
| 763 |
|
|
outfile.write(line)
|
| 764 |
|
|
else:
|
| 765 |
|
|
continue
|
| 766 |
|
|
pass
|
| 767 |
|
|
|
| 768 |
|
|
outfile.write('\n\n##### The following cards have been created by CRAB: DO NOT TOUCH #####\n')
|
| 769 |
|
|
outfile.write('TFileAdaptor = true\n')
|
| 770 |
|
|
|
| 771 |
|
|
outfile.write('MonRecAlisaBuilder=false\n')
|
| 772 |
|
|
|
| 773 |
|
|
outfile.write('InputCollections=/System/'+self.owner+'/'+self.dataset+'/'+self.dataset+'\n')
|
| 774 |
|
|
|
| 775 |
|
|
infile.close()
|
| 776 |
|
|
outfile.close()
|
| 777 |
|
|
return
|
| 778 |
|
|
|
| 779 |
|
|
def modifySteeringCards(self, nj):
|
| 780 |
|
|
"""
|
| 781 |
|
|
Creates steering cards file modifying a template file
|
| 782 |
|
|
"""
|
| 783 |
|
|
return
|
| 784 |
|
|
|
| 785 |
|
|
def cardsBaseName(self):
|
| 786 |
|
|
"""
|
| 787 |
|
|
Returns name of user orcarc card-file
|
| 788 |
|
|
"""
|
| 789 |
|
|
return os.path.split (self.orcarc_file)[1]
|
| 790 |
|
|
|
| 791 |
|
|
### content of input_sanbdox ...
|
| 792 |
|
|
def inputSandbox(self, nj):
|
| 793 |
|
|
"""
|
| 794 |
|
|
Returns a list of filenames to be put in JDL input sandbox.
|
| 795 |
|
|
"""
|
| 796 |
|
|
inp_box = []
|
| 797 |
|
|
# dict added to delete duplicate from input sandbox file list
|
| 798 |
|
|
seen = {}
|
| 799 |
|
|
## code
|
| 800 |
|
|
if os.path.isfile(self.tgzNameWithPath):
|
| 801 |
|
|
inp_box.append(self.tgzNameWithPath)
|
| 802 |
|
|
## orcarc
|
| 803 |
|
|
for o in self.allOrcarcs:
|
| 804 |
|
|
for f in o.fileList():
|
| 805 |
|
|
if (f not in seen.keys()):
|
| 806 |
|
|
inp_box.append(common.work_space.jobDir()+f)
|
| 807 |
|
|
seen[f] = 1
|
| 808 |
|
|
|
| 809 |
|
|
## config
|
| 810 |
|
|
inp_box.append(common.job_list[nj].configFilename())
|
| 811 |
|
|
## additional input files
|
| 812 |
|
|
#inp_box = inp_box + self.additional_inbox_files
|
| 813 |
|
|
return inp_box
|
| 814 |
|
|
|
| 815 |
|
|
### and of output_sandbox
|
| 816 |
|
|
def outputSandbox(self, nj):
|
| 817 |
|
|
"""
|
| 818 |
|
|
Returns a list of filenames to be put in JDL output sandbox.
|
| 819 |
|
|
"""
|
| 820 |
|
|
out_box = []
|
| 821 |
|
|
|
| 822 |
|
|
stdout=common.job_list[nj].stdout()
|
| 823 |
|
|
stderr=common.job_list[nj].stderr()
|
| 824 |
|
|
#out_box.append(stdout)
|
| 825 |
|
|
#out_box.append(stderr)
|
| 826 |
|
|
|
| 827 |
|
|
## User Declared output files
|
| 828 |
|
|
for out in self.output_file:
|
| 829 |
|
|
n_out = nj + 1
|
| 830 |
|
|
#FEDE
|
| 831 |
|
|
#out_box.append(self.version+'/'+self.numberFile_(out,str(n_out)))
|
| 832 |
|
|
out_box.append(self.numberFile_(out,str(n_out)))
|
| 833 |
|
|
return out_box
|
| 834 |
|
|
|
| 835 |
|
|
def getRequirements(self):
|
| 836 |
|
|
"""
|
| 837 |
|
|
return job requirements to add to jdl files
|
| 838 |
|
|
"""
|
| 839 |
|
|
req = ''
|
| 840 |
|
|
if common.analisys_common_info['sites']:
|
| 841 |
|
|
if common.analisys_common_info['sw_version']:
|
| 842 |
|
|
req='Member("VO-cms-' + \
|
| 843 |
|
|
common.analisys_common_info['sw_version'] + \
|
| 844 |
|
|
'", other.GlueHostApplicationSoftwareRunTimeEnvironment)'
|
| 845 |
|
|
if len(common.analisys_common_info['sites'])>0:
|
| 846 |
|
|
req = req + ' && ('
|
| 847 |
|
|
for i in range(len(common.analisys_common_info['sites'])):
|
| 848 |
|
|
req = req + 'other.GlueCEInfoHostName == "' \
|
| 849 |
|
|
+ common.analisys_common_info['sites'][i] + '"'
|
| 850 |
|
|
if ( i < (int(len(common.analisys_common_info['sites']) - 1)) ):
|
| 851 |
|
|
req = req + ' || '
|
| 852 |
|
|
req = req + ')'
|
| 853 |
|
|
#print "req = ", req
|
| 854 |
|
|
return req
|
| 855 |
|
|
|
| 856 |
|
|
def numberFile_(self, file, txt):
|
| 857 |
|
|
"""
|
| 858 |
|
|
append _'txt' before last extension of a file
|
| 859 |
|
|
"""
|
| 860 |
|
|
p = string.split(file,".")
|
| 861 |
|
|
# take away last extension
|
| 862 |
|
|
name = p[0]
|
| 863 |
|
|
for x in p[1:-1]:
|
| 864 |
|
|
name=name+"."+x
|
| 865 |
|
|
# add "_txt"
|
| 866 |
|
|
if len(p)>1:
|
| 867 |
|
|
ext = p[len(p)-1]
|
| 868 |
|
|
#result = name + '_' + str(txt) + "." + ext
|
| 869 |
|
|
result = name + '_' + txt + "." + ext
|
| 870 |
|
|
else:
|
| 871 |
|
|
#result = name + '_' + str(txt)
|
| 872 |
|
|
result = name + '_' + txt
|
| 873 |
|
|
|
| 874 |
|
|
return result
|
| 875 |
|
|
|
| 876 |
|
|
|
| 877 |
|
|
def stdOut(self):
|
| 878 |
|
|
return self.stdOut_
|
| 879 |
|
|
|
| 880 |
|
|
def stdErr(self):
|
| 881 |
|
|
return self.stdErr_
|
| 882 |
|
|
|
| 883 |
|
|
# marco
|
| 884 |
|
|
def setParam_(self, param, value):
|
| 885 |
|
|
self._params[param] = value
|
| 886 |
|
|
|
| 887 |
|
|
def getParams(self):
|
| 888 |
|
|
return self._params
|
| 889 |
|
|
|
| 890 |
|
|
def setTaskid_(self):
|
| 891 |
|
|
self._taskId = self.cfg_params['taskId']
|
| 892 |
|
|
|
| 893 |
|
|
def getTaskid(self):
|
| 894 |
|
|
return self._taskId
|
| 895 |
|
|
# marco
|
| 896 |
|
|
|
| 897 |
|
|
def configFilename(self):
|
| 898 |
|
|
""" return the config filename """
|
| 899 |
|
|
return self.name()+'.orcarc'
|
| 900 |
|
|
|
| 901 |
|
|
### OLI_DANIELE
|
| 902 |
|
|
def wsSetupCMSOSGEnvironment_(self):
|
| 903 |
|
|
"""
|
| 904 |
|
|
Returns part of a job script which is prepares
|
| 905 |
|
|
the execution environment and which is common for all CMS jobs.
|
| 906 |
|
|
"""
|
| 907 |
|
|
txt = '\n'
|
| 908 |
|
|
txt += ' echo "### SETUP CMS OSG ENVIRONMENT ###"\n'
|
| 909 |
|
|
txt += ' if [ -f $GRID3_APP_DIR/cmssoft/cmsset_default.sh ] ;then\n'
|
| 910 |
|
|
txt += ' # Use $GRID3_APP_DIR/cmssoft/cmsset_default.sh to setup cms software\n'
|
| 911 |
|
|
txt += ' source $GRID3_APP_DIR/cmssoft/cmsset_default.sh '+self.version+'\n'
|
| 912 |
|
|
txt += ' elif [ -f $OSG_APP/cmssoft/cmsset_default.sh ] ;then\n'
|
| 913 |
|
|
txt += ' # Use $OSG_APP/cmssoft/cmsset_default.sh to setup cms software\n'
|
| 914 |
|
|
txt += ' source $OSG_APP/cmssoft/cmsset_default.sh '+self.version+'\n'
|
| 915 |
|
|
txt += ' else\n'
|
| 916 |
|
|
txt += ' echo "SET_CMS_ENV 10020 ==> ERROR $GRID3_APP_DIR/cmssoft/cmsset_default.sh and $OSG_APP/cmssoft/cmsset_default.sh file not found"\n'
|
| 917 |
|
|
txt += ' echo "JOB_EXIT_STATUS = 10020"\n'
|
| 918 |
|
|
txt += ' echo "JobExitCode=10020" | tee -a $RUNTIME_AREA/$repo\n'
|
| 919 |
|
|
txt += ' dumpStatus $RUNTIME_AREA/$repo\n'
|
| 920 |
gutsche |
1.4 |
txt += ' rm -f $RUNTIME_AREA/$repo \n'
|
| 921 |
|
|
txt += ' echo "MonitorJobID=`echo $MonitorJobID`" | tee -a $RUNTIME_AREA/$repo \n'
|
| 922 |
|
|
txt += ' echo "MonitorID=`echo $MonitorID`" | tee -a $RUNTIME_AREA/$repo\n'
|
| 923 |
slacapra |
1.1 |
txt += ' exit 1\n'
|
| 924 |
|
|
txt += '\n'
|
| 925 |
|
|
txt += ' echo "Remove working directory: $WORKING_DIR"\n'
|
| 926 |
|
|
txt += ' cd $RUNTIME_AREA\n'
|
| 927 |
|
|
txt += ' /bin/rm -rf $WORKING_DIR\n'
|
| 928 |
|
|
txt += ' if [ -d $WORKING_DIR ] ;then\n'
|
| 929 |
|
|
txt += ' echo "SET_CMS_ENV 10017 ==> OSG $WORKING_DIR could not be deleted on WN `hostname` after $GRID3_APP_DIR/cmssoft/cmsset_default.sh and $OSG_APP/cmssoft/cmsset_default.sh file not found"\n'
|
| 930 |
|
|
txt += ' echo "JOB_EXIT_STATUS = 10017"\n'
|
| 931 |
|
|
txt += ' echo "JobExitCode=10017" | tee -a $RUNTIME_AREA/$repo\n'
|
| 932 |
|
|
txt += ' dumpStatus $RUNTIME_AREA/$repo\n'
|
| 933 |
gutsche |
1.4 |
txt += ' rm -f $RUNTIME_AREA/$repo \n'
|
| 934 |
|
|
txt += ' echo "MonitorJobID=`echo $MonitorJobID`" | tee -a $RUNTIME_AREA/$repo \n'
|
| 935 |
|
|
txt += ' echo "MonitorID=`echo $MonitorID`" | tee -a $RUNTIME_AREA/$repo\n'
|
| 936 |
slacapra |
1.1 |
txt += ' fi\n'
|
| 937 |
|
|
txt += '\n'
|
| 938 |
|
|
txt += ' exit 1\n'
|
| 939 |
|
|
txt += ' fi\n'
|
| 940 |
|
|
txt += '\n'
|
| 941 |
|
|
txt += ' echo "SET_CMS_ENV 0 ==> setup cms environment ok"\n'
|
| 942 |
|
|
txt += ' echo " END SETUP CMS OSG ENVIRONMENT "\n'
|
| 943 |
|
|
|
| 944 |
|
|
return txt
|
| 945 |
|
|
|
| 946 |
|
|
### OLI_DANIELE
|
| 947 |
|
|
def wsSetupCMSLCGEnvironment_(self):
|
| 948 |
|
|
"""
|
| 949 |
|
|
Returns part of a job script which is prepares
|
| 950 |
|
|
the execution environment and which is common for all CMS jobs.
|
| 951 |
|
|
"""
|
| 952 |
|
|
txt = ' \n'
|
| 953 |
|
|
txt += ' echo " ### SETUP CMS LCG ENVIRONMENT ### "\n'
|
| 954 |
|
|
txt += ' echo "JOB_EXIT_STATUS = 0"\n'
|
| 955 |
|
|
txt += ' if [ ! $VO_CMS_SW_DIR ] ;then\n'
|
| 956 |
|
|
txt += ' echo "SET_CMS_ENV 10031 ==> ERROR CMS software dir not found on WN `hostname`"\n'
|
| 957 |
|
|
txt += ' echo "JOB_EXIT_STATUS = 10031" \n'
|
| 958 |
|
|
txt += ' echo "JobExitCode=10031" | tee -a $RUNTIME_AREA/$repo\n'
|
| 959 |
|
|
txt += ' dumpStatus $RUNTIME_AREA/$repo\n'
|
| 960 |
gutsche |
1.4 |
txt += ' rm -f $RUNTIME_AREA/$repo \n'
|
| 961 |
|
|
txt += ' echo "MonitorJobID=`echo $MonitorJobID`" | tee -a $RUNTIME_AREA/$repo \n'
|
| 962 |
|
|
txt += ' echo "MonitorID=`echo $MonitorID`" | tee -a $RUNTIME_AREA/$repo\n'
|
| 963 |
slacapra |
1.1 |
txt += ' exit 1\n'
|
| 964 |
|
|
txt += ' else\n'
|
| 965 |
|
|
txt += ' echo "Sourcing environment... "\n'
|
| 966 |
|
|
txt += ' if [ ! -s $VO_CMS_SW_DIR/cmsset_default.sh ] ;then\n'
|
| 967 |
|
|
txt += ' echo "SET_CMS_ENV 10020 ==> ERROR cmsset_default.sh file not found into dir $VO_CMS_SW_DIR"\n'
|
| 968 |
|
|
txt += ' echo "JOB_EXIT_STATUS = 10020"\n'
|
| 969 |
|
|
txt += ' echo "JobExitCode=10020" | tee -a $RUNTIME_AREA/$repo\n'
|
| 970 |
|
|
txt += ' dumpStatus $RUNTIME_AREA/$repo\n'
|
| 971 |
gutsche |
1.4 |
txt += ' rm -f $RUNTIME_AREA/$repo \n'
|
| 972 |
|
|
txt += ' echo "MonitorJobID=`echo $MonitorJobID`" | tee -a $RUNTIME_AREA/$repo \n'
|
| 973 |
|
|
txt += ' echo "MonitorID=`echo $MonitorID`" | tee -a $RUNTIME_AREA/$repo\n'
|
| 974 |
slacapra |
1.1 |
txt += ' exit 1\n'
|
| 975 |
|
|
txt += ' fi\n'
|
| 976 |
|
|
txt += ' echo "sourcing $VO_CMS_SW_DIR/cmsset_default.sh"\n'
|
| 977 |
|
|
txt += ' source $VO_CMS_SW_DIR/cmsset_default.sh\n'
|
| 978 |
|
|
txt += ' result=$?\n'
|
| 979 |
|
|
txt += ' if [ $result -ne 0 ]; then\n'
|
| 980 |
|
|
txt += ' echo "SET_CMS_ENV 10032 ==> ERROR problem sourcing $VO_CMS_SW_DIR/cmsset_default.sh"\n'
|
| 981 |
|
|
txt += ' echo "JOB_EXIT_STATUS = 10032"\n'
|
| 982 |
|
|
txt += ' echo "JobExitCode=10032" | tee -a $RUNTIME_AREA/$repo\n'
|
| 983 |
|
|
txt += ' dumpStatus $RUNTIME_AREA/$repo\n'
|
| 984 |
gutsche |
1.4 |
txt += ' rm -f $RUNTIME_AREA/$repo \n'
|
| 985 |
|
|
txt += ' echo "MonitorJobID=`echo $MonitorJobID`" | tee -a $RUNTIME_AREA/$repo \n'
|
| 986 |
|
|
txt += ' echo "MonitorID=`echo $MonitorID`" | tee -a $RUNTIME_AREA/$repo\n'
|
| 987 |
slacapra |
1.1 |
txt += ' exit 1\n'
|
| 988 |
|
|
txt += ' fi\n'
|
| 989 |
|
|
txt += ' fi\n'
|
| 990 |
|
|
txt += ' \n'
|
| 991 |
|
|
txt += ' string=`cat /etc/redhat-release`\n'
|
| 992 |
|
|
txt += ' echo $string\n'
|
| 993 |
|
|
txt += ' if [[ $string = *alhalla* ]]; then\n'
|
| 994 |
|
|
txt += ' echo "SCRAM_ARCH= $SCRAM_ARCH"\n'
|
| 995 |
|
|
txt += ' elif [[ $string = *Enterprise* ]] || [[ $string = *cientific* ]]; then\n'
|
| 996 |
|
|
txt += ' export SCRAM_ARCH=slc3_ia32_gcc323\n'
|
| 997 |
|
|
txt += ' echo "SCRAM_ARCH= $SCRAM_ARCH"\n'
|
| 998 |
|
|
txt += ' else\n'
|
| 999 |
|
|
txt += ' echo "SET_CMS_ENV 1 ==> ERROR OS unknown, LCG environment not initialized"\n'
|
| 1000 |
|
|
txt += ' echo "JOB_EXIT_STATUS = 10033"\n'
|
| 1001 |
|
|
txt += ' echo "JobExitCode=10033" | tee -a $RUNTIME_AREA/$repo\n'
|
| 1002 |
|
|
txt += ' dumpStatus $RUNTIME_AREA/$repo\n'
|
| 1003 |
gutsche |
1.4 |
txt += ' rm -f $RUNTIME_AREA/$repo \n'
|
| 1004 |
|
|
txt += ' echo "MonitorJobID=`echo $MonitorJobID`" | tee -a $RUNTIME_AREA/$repo \n'
|
| 1005 |
|
|
txt += ' echo "MonitorID=`echo $MonitorID`" | tee -a $RUNTIME_AREA/$repo\n'
|
| 1006 |
slacapra |
1.1 |
txt += ' exit 1\n'
|
| 1007 |
|
|
txt += ' fi\n'
|
| 1008 |
|
|
txt += ' echo "SET_CMS_ENV 0 ==> setup cms environment ok"\n'
|
| 1009 |
|
|
txt += ' echo "### END SETUP CMS LCG ENVIRONMENT ###"\n'
|
| 1010 |
|
|
return txt
|
| 1011 |
|
|
|
