1 |
nsmirnov |
1.1 |
###########################################################################
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#
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# C O N V E N I E N C E F U N C T I O N S
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#
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###########################################################################
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slacapra |
1.12 |
import string, sys, os, time
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8 |
slacapra |
1.16 |
import ConfigParser, re, popen2, select, fcntl
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9 |
nsmirnov |
1.1 |
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10 |
nsmirnov |
1.2 |
import common
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11 |
slacapra |
1.30 |
from crab_exceptions import CrabException
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12 |
spiga |
1.42 |
from ServerConfig import *
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13 |
nsmirnov |
1.1 |
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14 |
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###########################################################################
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15 |
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def parseOptions(argv):
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"""
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Parses command-line options.
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Returns a dictionary with specified options as keys:
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-opt1 --> 'opt1' : None
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-opt2 val --> 'opt2' : 'val'
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-opt3=val --> 'opt3' : 'val'
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Usually called as
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options = parseOptions(sys.argv[1:])
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"""
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options = {}
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argc = len(argv)
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i = 0
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while ( i < argc ):
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if argv[i][0] != '-':
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i = i + 1
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continue
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eq = string.find(argv[i], '=')
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if eq > 0 :
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opt = argv[i][:eq]
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val = argv[i][eq+1:]
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pass
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else:
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opt = argv[i]
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val = None
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if ( i+1 < argc and argv[i+1][0] != '-' ):
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i = i + 1
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val = argv[i]
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pass
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pass
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options[opt] = val
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i = i + 1
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pass
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return options
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50 |
slacapra |
1.47 |
def loadConfig(file, config):
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51 |
nsmirnov |
1.1 |
"""
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52 |
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returns a dictionary with keys of the form
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<section>.<option> and the corresponding values
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"""
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slacapra |
1.47 |
#config={}
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56 |
nsmirnov |
1.1 |
cp = ConfigParser.ConfigParser()
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cp.read(file)
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for sec in cp.sections():
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# print 'Section',sec
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for opt in cp.options(sec):
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#print 'config['+sec+'.'+opt+'] = '+string.strip(cp.get(sec,opt))
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config[sec+'.'+opt] = string.strip(cp.get(sec,opt))
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return config
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###########################################################################
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def isInt(str):
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""" Is the given string an integer ?"""
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try: int(str)
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except ValueError: return 0
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return 1
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###########################################################################
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def isBool(str):
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""" Is the given string 0 or 1 ?"""
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if (str in ('0','1')): return 1
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return 0
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###########################################################################
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nsmirnov |
1.3 |
def parseRange(range):
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"""
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Takes as the input a string with two integers separated by
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the minus sign and returns the tuple with these numbers:
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'n1-n2' -> (n1, n2)
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'n1' -> (n1, n1)
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"""
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start = None
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end = None
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minus = string.find(range, '-')
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if ( minus < 0 ):
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if isInt(range):
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start = int(range)
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end = start
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pass
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pass
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else:
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if isInt(range[:minus]) and isInt(range[minus+1:]):
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start = int(range[:minus])
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end = int(range[minus+1:])
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pass
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pass
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return (start, end)
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###########################################################################
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104 |
nsmirnov |
1.4 |
def parseRange2(range):
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"""
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Takes as the input a string in the form of a comma-separated
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numbers and ranges
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and returns a list with all specified numbers:
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'n1' -> [n1]
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'n1-n2' -> [n1, n1+1, ..., n2]
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'n1,n2-n3,n4' -> [n1, n2, n2+1, ..., n3, n4]
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"""
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slacapra |
1.30 |
result = []
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if not range: return result
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nsmirnov |
1.4 |
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comma = string.find(range, ',')
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if comma == -1: left = range
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else: left = range[:comma]
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(n1, n2) = parseRange(left)
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while ( n1 <= n2 ):
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slacapra |
1.11 |
try:
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123 |
slacapra |
1.30 |
result.append(n1)
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124 |
slacapra |
1.11 |
n1 += 1
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pass
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except:
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msg = 'Syntax error in range <'+range+'>'
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raise CrabException(msg)
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129 |
nsmirnov |
1.4 |
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if comma != -1:
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slacapra |
1.11 |
try:
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132 |
slacapra |
1.30 |
result.extend(parseRange2(range[comma+1:]))
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slacapra |
1.11 |
pass
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except:
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msg = 'Syntax error in range <'+range+'>'
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raise CrabException(msg)
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137 |
nsmirnov |
1.4 |
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138 |
slacapra |
1.30 |
return result
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139 |
nsmirnov |
1.4 |
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140 |
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###########################################################################
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141 |
nsmirnov |
1.3 |
def crabJobStatusToString(crab_status):
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142 |
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"""
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143 |
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Convert one-letter crab job status into more readable string.
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144 |
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"""
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145 |
corvo |
1.27 |
status={
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146 |
slacapra |
1.38 |
'C':'Created',
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'D':'Done',
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148 |
corvo |
1.27 |
'H':'Hold',
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149 |
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'U':'Ready',
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150 |
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'I':'Scheduled',
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'X':'Canceled',
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'W':'Created',
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'R':'Running',
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'SC':'Checkpointed',
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'SS':'Scheduled',
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'SR':'Ready',
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'RE':'Ready',
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158 |
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'SW':'Waiting',
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'SU':'Submitted',
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'S' :'Submitted (Boss)',
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'UN':'Undefined',
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'SK':'Cancelled',
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163 |
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'SD':'Done (Success)',
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'SA':'Aborted',
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'DA':'Done (Aborted)',
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'SE':'Cleared',
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'OR':'Done (Success)',
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'A?':'Aborted',
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'K':'Killed',
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'E':'Cleared',
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'Z':'Cleared (Corrupt)',
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'NA':'Unknown',
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'I?':'Idle',
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'O?':'Done',
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'R?':'Running'
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}
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return status[crab_status]
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178 |
nsmirnov |
1.3 |
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179 |
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###########################################################################
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180 |
nsmirnov |
1.1 |
def findLastWorkDir(dir_prefix, where = None):
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181 |
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182 |
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if not where: where = os.getcwd() + '/'
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183 |
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# dir_prefix usually has the form 'crab_0_'
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184 |
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pattern = re.compile(dir_prefix)
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185 |
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186 |
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file_list = []
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for fl in os.listdir(where):
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if pattern.match(fl):
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file_list.append(fl)
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pass
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pass
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if len(file_list) == 0: return None
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194 |
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file_list.sort()
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196 |
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wdir = where + file_list[len(file_list)-1]
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return wdir
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199 |
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200 |
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###########################################################################
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201 |
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def importName(module_name, name):
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202 |
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"""
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203 |
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Import a named object from a Python module,
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204 |
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i.e., it is an equivalent of 'from module_name import name'.
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205 |
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"""
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206 |
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module = __import__(module_name, globals(), locals(), [name])
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207 |
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return vars(module)[name]
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208 |
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209 |
spiga |
1.9 |
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210 |
slacapra |
1.11 |
###########################################################################
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211 |
spiga |
1.28 |
|
212 |
slacapra |
1.29 |
### WARNING This Function become USELESS after Boss API implementation
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213 |
gutsche |
1.24 |
def runBossCommand(cmd, printout=0, timeout=3600):
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214 |
slacapra |
1.11 |
"""
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215 |
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Cd to correct directory before running a boss command
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216 |
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"""
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217 |
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cwd = os.getcwd()
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218 |
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os.chdir(common.work_space.shareDir())
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219 |
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out = runCommand(cmd, printout, timeout)
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220 |
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os.chdir(cwd)
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221 |
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return out
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222 |
spiga |
1.9 |
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223 |
nsmirnov |
1.1 |
###########################################################################
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224 |
slacapra |
1.16 |
def readable(fd):
|
225 |
ewv |
1.44 |
return bool(select.select([fd], [], [], 0))
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226 |
slacapra |
1.16 |
|
227 |
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###########################################################################
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228 |
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def makeNonBlocking(fd):
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229 |
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fl = fcntl.fcntl(fd, fcntl.F_GETFL)
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230 |
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try:
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231 |
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fcntl.fcntl(fd, fcntl.F_SETFL, fl | os.O_NDELAY)
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232 |
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except AttributeError:
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233 |
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fcntl.fcntl(fd, fcntl.F_SETFL, fl | os.FNDELAY)
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234 |
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235 |
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###########################################################################
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236 |
slacapra |
1.11 |
def runCommand(cmd, printout=0, timeout=-1):
|
237 |
nsmirnov |
1.1 |
"""
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238 |
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Run command 'cmd'.
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239 |
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Returns command stdoutput+stderror string on success,
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240 |
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or None if an error occurred.
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241 |
slacapra |
1.16 |
Following recipe on http://aspn.activestate.com/ASPN/Cookbook/Python/Recipe/52296
|
242 |
nsmirnov |
1.1 |
"""
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243 |
fanzago |
1.15 |
|
244 |
slacapra |
1.11 |
if printout:
|
245 |
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common.logger.message(cmd)
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246 |
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else:
|
247 |
slacapra |
1.13 |
common.logger.debug(10,cmd)
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248 |
slacapra |
1.11 |
common.logger.write(cmd)
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249 |
slacapra |
1.29 |
pass
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250 |
slacapra |
1.11 |
|
251 |
slacapra |
1.16 |
child = popen2.Popen3(cmd, 1) # capture stdout and stderr from command
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252 |
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child.tochild.close() # don't need to talk to child
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253 |
ewv |
1.44 |
outfile = child.fromchild
|
254 |
slacapra |
1.16 |
outfd = outfile.fileno()
|
255 |
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errfile = child.childerr
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256 |
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errfd = errfile.fileno()
|
257 |
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makeNonBlocking(outfd) # don't deadlock!
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258 |
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makeNonBlocking(errfd)
|
259 |
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outdata = []
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260 |
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errdata = []
|
261 |
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outeof = erreof = 0
|
262 |
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|
263 |
|
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if timeout > 0 :
|
264 |
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maxwaittime = time.time() + timeout
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265 |
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|
266 |
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err = -1
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267 |
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while (timeout == -1 or time.time() < maxwaittime):
|
268 |
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ready = select.select([outfd,errfd],[],[]) # wait for input
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269 |
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if outfd in ready[0]:
|
270 |
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outchunk = outfile.read()
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271 |
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if outchunk == '': outeof = 1
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272 |
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outdata.append(outchunk)
|
273 |
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if errfd in ready[0]:
|
274 |
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errchunk = errfile.read()
|
275 |
|
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if errchunk == '': erreof = 1
|
276 |
|
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errdata.append(errchunk)
|
277 |
|
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if outeof and erreof:
|
278 |
|
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err = child.wait()
|
279 |
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break
|
280 |
slacapra |
1.21 |
select.select([],[],[],.01) # give a little time for buffers to fill
|
281 |
slacapra |
1.16 |
if err == -1:
|
282 |
|
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# kill the pid
|
283 |
slacapra |
1.18 |
common.logger.message('killing process '+(cmd)+' with timeout '+str(timeout))
|
284 |
slacapra |
1.16 |
os.kill (child.pid, 9)
|
285 |
slacapra |
1.11 |
err = child.wait()
|
286 |
slacapra |
1.16 |
|
287 |
fanzago |
1.17 |
cmd_out = string.join(outdata,"")
|
288 |
|
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cmd_err = string.join(errdata,"")
|
289 |
|
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|
290 |
slacapra |
1.11 |
if err:
|
291 |
|
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common.logger.message('`'+cmd+'`\n failed with exit code '
|
292 |
|
|
+`err`+'='+`(err&0xff)`+'(signal)+'
|
293 |
|
|
+`(err>>8)`+'(status)')
|
294 |
|
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common.logger.message(cmd_out)
|
295 |
|
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common.logger.message(cmd_err)
|
296 |
nsmirnov |
1.1 |
return None
|
297 |
|
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|
298 |
fanzago |
1.17 |
# cmd_out = string.join(outdata,"")
|
299 |
|
|
# cmd_err = string.join(errdata,"")
|
300 |
nsmirnov |
1.1 |
cmd_out = cmd_out + cmd_err
|
301 |
slacapra |
1.11 |
if printout:
|
302 |
|
|
common.logger.message(cmd_out)
|
303 |
|
|
else:
|
304 |
slacapra |
1.13 |
common.logger.debug(10,cmd_out)
|
305 |
slacapra |
1.11 |
common.logger.write(cmd_out)
|
306 |
slacapra |
1.29 |
pass
|
307 |
slacapra |
1.16 |
#print "<"+cmd_out+">"
|
308 |
nsmirnov |
1.1 |
return cmd_out
|
309 |
nsmirnov |
1.4 |
|
310 |
slacapra |
1.11 |
####################################
|
311 |
gutsche |
1.20 |
def makeCksum(filename) :
|
312 |
|
|
"""
|
313 |
ewv |
1.44 |
make check sum using filename and content of file
|
314 |
gutsche |
1.20 |
"""
|
315 |
|
|
|
316 |
ewv |
1.44 |
from zlib import crc32
|
317 |
|
|
hashString = filename
|
318 |
gutsche |
1.20 |
|
319 |
ewv |
1.44 |
inFile = open(filename, 'r')
|
320 |
|
|
hashString += inFile.read()
|
321 |
|
|
inFile.close()
|
322 |
gutsche |
1.20 |
|
323 |
ewv |
1.44 |
cksum = str(crc32(hashString))
|
324 |
gutsche |
1.20 |
return cksum
|
325 |
|
|
|
326 |
ewv |
1.52 |
|
327 |
|
|
def uniqueTaskName(nativeTaskName):
|
328 |
|
|
"""
|
329 |
|
|
For task names that don't follow USER_crab_0_YYMMDD_HHMMSS, generate a new one that includes
|
330 |
|
|
part of the internal BossLite taskId
|
331 |
|
|
"""
|
332 |
|
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|
333 |
|
|
import re
|
334 |
|
|
taskName = "_".join(nativeTaskName.split('_')[:-1])
|
335 |
|
|
reTask = re.compile('.*?_crab_0_\d{6}_\d{6}')
|
336 |
|
|
isDefault = reTask.match(taskName)
|
337 |
|
|
if not isDefault:
|
338 |
|
|
taskName = "-".join(nativeTaskName.split('-')[:-4])
|
339 |
|
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|
340 |
|
|
return str(taskName) # By default is unicode, ML needs standard string
|
341 |
|
|
|
342 |
|
|
|
343 |
gutsche |
1.32 |
def spanRanges(jobArray):
|
344 |
|
|
"""
|
345 |
|
|
take array of job numbers and concatenate 1,2,3 to 1-3
|
346 |
|
|
return string
|
347 |
|
|
"""
|
348 |
|
|
|
349 |
|
|
output = ""
|
350 |
mcinquil |
1.35 |
jobArray.sort()
|
351 |
ewv |
1.44 |
|
352 |
gutsche |
1.32 |
previous = jobArray[0]-1
|
353 |
|
|
for job in jobArray:
|
354 |
|
|
if previous+1 == job:
|
355 |
|
|
previous = job
|
356 |
|
|
if len(output) > 0 :
|
357 |
|
|
if output[-1] != "-":
|
358 |
|
|
output += "-"
|
359 |
|
|
else :
|
360 |
|
|
output += str(previous)
|
361 |
|
|
else:
|
362 |
|
|
output += str(previous) + "," + str(job)
|
363 |
mcinquil |
1.35 |
#output += "," + str(job)
|
364 |
gutsche |
1.32 |
previous = job
|
365 |
|
|
if len(jobArray) > 1 :
|
366 |
|
|
output += str(previous)
|
367 |
|
|
|
368 |
|
|
return output
|
369 |
|
|
|
370 |
spiga |
1.40 |
def displayReport(self, header, lines, xml=''):
|
371 |
ewv |
1.44 |
|
372 |
spiga |
1.49 |
counter = 0
|
373 |
|
|
printline = ''
|
374 |
|
|
printline+= header
|
375 |
|
|
print printline
|
376 |
|
|
print '---------------------------------------------------------------------------------------------------'
|
377 |
|
|
|
378 |
|
|
for i in range(len(lines)):
|
379 |
|
|
if counter != 0 and counter%10 == 0 :
|
380 |
|
|
print '---------------------------------------------------------------------------------------------------'
|
381 |
|
|
print lines[i]
|
382 |
|
|
counter += 1
|
383 |
|
|
if xml != '' :
|
384 |
spiga |
1.40 |
fileName = common.work_space.shareDir() + xml
|
385 |
|
|
task = common._db.getTask()
|
386 |
|
|
taskXML = common._db.serializeTask(task)
|
387 |
|
|
common.logger.debug(5, taskXML)
|
388 |
|
|
f = open(fileName, 'w')
|
389 |
|
|
f.write(taskXML)
|
390 |
|
|
f.close()
|
391 |
|
|
pass
|
392 |
spiga |
1.39 |
|
393 |
spiga |
1.42 |
def CliServerParams(self):
|
394 |
slacapra |
1.45 |
"""
|
395 |
|
|
Init client-server interactions
|
396 |
|
|
"""
|
397 |
|
|
self.srvCfg = {}
|
398 |
|
|
try:
|
399 |
|
|
self.srvCfg = ServerConfig(self.cfg_params['CRAB.server_name']).config()
|
400 |
|
|
|
401 |
|
|
self.server_name = str(self.srvCfg['serverName'])
|
402 |
|
|
self.server_port = int(self.srvCfg['serverPort'])
|
403 |
|
|
|
404 |
|
|
self.storage_name = str(self.srvCfg['storageName'])
|
405 |
|
|
self.storage_path = str(self.srvCfg['storagePath'])
|
406 |
|
|
self.storage_proto = str(self.srvCfg['storageProtocol'])
|
407 |
|
|
self.storage_port = str(self.srvCfg['storagePort'])
|
408 |
|
|
except KeyError:
|
409 |
|
|
msg = 'No server selected or port specified.'
|
410 |
|
|
msg = msg + 'Please specify a server in the crab cfg file'
|
411 |
|
|
raise CrabException(msg)
|
412 |
spiga |
1.42 |
return
|
413 |
spiga |
1.39 |
|
414 |
ewv |
1.44 |
def bulkControl(self,list):
|
415 |
slacapra |
1.45 |
"""
|
416 |
|
|
Check the BULK size and reduce collection ...if needed
|
417 |
|
|
"""
|
418 |
|
|
max_size = 400
|
419 |
|
|
sub_bulk = []
|
420 |
|
|
if len(list) > int(max_size):
|
421 |
|
|
n_sub_bulk = int( int(len(list) ) / int(max_size) )
|
422 |
mcinquil |
1.53 |
for n in xrange(n_sub_bulk):
|
423 |
slacapra |
1.45 |
first =n*int(max_size)
|
424 |
|
|
last = (n+1)*int(max_size)
|
425 |
|
|
sub_bulk.append(list[first:last])
|
426 |
|
|
if len(list[last:-1]) < 50:
|
427 |
|
|
for pp in list[last:-1]:
|
428 |
|
|
sub_bulk[n_sub_bulk-1].append(pp)
|
429 |
spiga |
1.43 |
else:
|
430 |
mcinquil |
1.53 |
sub_bulk.append(list[last:])
|
431 |
slacapra |
1.45 |
else:
|
432 |
|
|
sub_bulk.append(list)
|
433 |
|
|
|
434 |
|
|
return sub_bulk
|
435 |
|
|
|
436 |
|
|
def numberFile(file, txt):
|
437 |
|
|
"""
|
438 |
|
|
append _'txt' before last extension of a file
|
439 |
|
|
"""
|
440 |
|
|
txt=str(txt)
|
441 |
|
|
p = string.split(file,".")
|
442 |
|
|
# take away last extension
|
443 |
|
|
name = p[0]
|
444 |
|
|
for x in p[1:-1]:
|
445 |
|
|
name=name+"."+x
|
446 |
|
|
# add "_txt"
|
447 |
|
|
if len(p)>1:
|
448 |
|
|
ext = p[len(p)-1]
|
449 |
|
|
result = name + '_' + txt + "." + ext
|
450 |
|
|
else:
|
451 |
|
|
result = name + '_' + txt
|
452 |
spiga |
1.43 |
|
453 |
slacapra |
1.45 |
return result
|
454 |
spiga |
1.46 |
|
455 |
|
|
def readTXTfile(self,inFileName):
|
456 |
|
|
"""
|
457 |
|
|
read file and return a list with the content
|
458 |
|
|
"""
|
459 |
|
|
out_list=[]
|
460 |
|
|
if os.path.exists(inFileName):
|
461 |
|
|
f = open(inFileName, 'r')
|
462 |
|
|
for line in f.readlines():
|
463 |
ewv |
1.52 |
out_list.append(string.strip(line))
|
464 |
spiga |
1.46 |
f.close()
|
465 |
|
|
else:
|
466 |
|
|
msg = ' file '+str(inFileName)+' not found.'
|
467 |
ewv |
1.52 |
raise CrabException(msg)
|
468 |
spiga |
1.46 |
return out_list
|
469 |
|
|
|
470 |
|
|
def writeTXTfile(self, outFileName, args):
|
471 |
|
|
"""
|
472 |
|
|
write a file with the given content ( args )
|
473 |
|
|
"""
|
474 |
|
|
outFile = open(outFileName,"a")
|
475 |
|
|
outFile.write(str(args))
|
476 |
|
|
outFile.close()
|
477 |
|
|
return
|
478 |
|
|
|
479 |
spiga |
1.51 |
def getLocalDomain(self):
|
480 |
ewv |
1.52 |
"""
|
481 |
spiga |
1.51 |
Get local domain name
|
482 |
ewv |
1.52 |
"""
|
483 |
spiga |
1.51 |
import socket
|
484 |
|
|
tmp=socket.gethostname()
|
485 |
|
|
dot=string.find(tmp,'.')
|
486 |
|
|
if (dot==-1):
|
487 |
|
|
msg='Unkown domain name. Cannot use local scheduler'
|
488 |
|
|
raise CrabException(msg)
|
489 |
|
|
localDomainName = string.split(tmp,'.',1)[-1]
|
490 |
ewv |
1.52 |
return localDomainName
|
491 |
spiga |
1.51 |
|
492 |
gutsche |
1.20 |
####################################
|
493 |
nsmirnov |
1.4 |
if __name__ == '__main__':
|
494 |
|
|
print 'sys.argv[1] =',sys.argv[1]
|
495 |
|
|
list = parseRange2(sys.argv[1])
|
496 |
|
|
print list
|
497 |
slacapra |
1.29 |
cksum = makeCksum("crab_util.py")
|
498 |
|
|
print cksum
|
499 |
ewv |
1.44 |
|