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mangano |
1.1 |
#!/bin/bash
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######################################################
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# heds 0 (create new directories)
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# heds 1 (query runregistry)
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# heds 2 (create crab task)
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# heds 3 (get and publish jobs)
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# heds 4 (create all the html tables and store logs)
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# heds 5* (event display stuff)
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######################################################
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choice=$1
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dailySkim=$HEDS_NAMEPREFIX$HEDS_LABEL-v$HEDS_TASKATTEMPT
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case $choice in
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0)
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echo "=== you selected option 0. Setting up directories and one-time things ==="
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echo ""
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if [ -d $HEDS_LOCALSTORE ]
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then echo "directory " $HEDS_LOCALSTORE "already exists"
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else
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echo "making " $HEDS_LOCALSTORE " directory"
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mkdir -p $HEDS_LOCALSTORE
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fi
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if [ -d $HEDS_FINALAREA/logs.SkimV$HEDS_SKIMVERSION ]
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then echo "directory " $HEDS_FINALAREA/logs.SkimV$HEDS_SKIMVERSION "already exists"
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else
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echo "making " $HEDS_FINALAREA/logs.SkimV$HEDS_SKIMVERSION " directory"
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mkdir -p $HEDS_FINALAREA/logs.SkimV$HEDS_SKIMVERSION
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fi
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nsls -d $HEDS_CASTORFOLDER/skimV$HEDS_SKIMVERSION >& tmp
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check=`cat tmp |grep "No such" |wc -w`
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rm tmp
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if [ $check == 0 ]
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then echo "directory " $HEDS_CASTORFOLDER/skimV$HEDS_SKIMVERSION "already exists"
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else
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echo "making " $HEDS_CASTORFOLDER/skimV$HEDS_SKIMVERSION " directory"
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rfmkdir -p $HEDS_CASTORFOLDER/skimV$HEDS_SKIMVERSION
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fi
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;;
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1)
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echo "=== you selected option 1. Querying RunRegistry, select good runs and submit crab jobs ==="
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echo ""
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dateForDbsSearch=`echo $HEDS_LABEL|awk -F\. '{print $3"-"$2"-"$1}'`
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echo "dateForDbsSearch: " $dateForDbsSearch
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dbs search --query="find run where dataset=$HEDS_INPUTDATASET and run.createdate=$dateForDbsSearch" \
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> tmpRunList.txt
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lastRun=`cat tmpRunList.txt |grep [0-9][0-9][0-9][0-9][0-9][0-9] |head -n1`
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firstRun=`cat tmpRunList.txt|tail -n1`
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rm tmpRunList.txt
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#TO BE FIXED: add a protection for when there are no runs
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echo "first,last runs: " $firstRun $lastRun
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runselection="runselection="
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cat $HEDSPATH/scripts/runreg.cfg | sed s/SET_RUNMIN/$firstRun/ | \
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sed s/SET_RUNMAX/$lastRun/ > runreg.cfg
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python $HEDSPATH/scripts/runregparse.py > tmp.log
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rm runreg.cfg
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echo "here we have the good run list"
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IFS=$'\n'
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found=0
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lastGoodRun=0
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for line in $(cat tmp.log);
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do
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if [ $found == 0 ]
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then
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found=`echo $line |grep lumisToProcess|wc |awk '{print $1}'`
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continue;
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fi
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if [ $line == ")" ]
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then
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break;
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fi
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thisRun=`echo $line | sed s/\'//g | sed s/,//g |awk -F: '{print $1}'`
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if [ $thisRun != $lastGoodRun ]
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then
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runselection=$runselection$thisRun\,
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fi
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lastGoodRun=$thisRun
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done
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#echo "========= THE FOLLOWING LINE TO YOUR crab.cfg FILE ========="
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echo $runselection
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#echo "================================================================"
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echo $runselection > $HEDS_LABEL.runselection
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echo $firstRun-$lastRun > $HEDS_LABEL.runinterval
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rm tmp.log
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check=`echo $runselection | sed s/runselection=// |wc -w`
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if [ $check == 0 ]
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then
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echo "No good runs have been selected. No CRAB cfg will be created."
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else
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echo "Some good runs have been selected. CRAB cfg will be created."
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cat $HEDSPATH/scripts/crab.template.cfg |sed "s#SET_DATASET#$HEDS_INPUTDATASET#" | \
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sed "s#SET_REMOTEDIR#$HEDS_USERID/HEDS#" | \
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sed "s#SET_T2#$HEDS_T2SITE#" | \
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sed "s/SET_RUNSELECTION/$runselection/" > tmp.cfg
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pset=$HEDSPATH/python/earlyDataInterestingEvents_cfg.py
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echo "pset: " $pset
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cat tmp.cfg |sed s#SET_PSET#$pset# | sed "s#SET_TASK_NAME#$dailySkim#" > tmp2.cfg; rm tmp.cfg
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mv tmp2.cfg $HEDS_LABEL.crab.cfg
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fi
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;;
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2)
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echo "creating and submitting CRAB jobs for " $dailySkim
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if [ -e $HEDS_LABEL.crab.cfg ]
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then
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crab -create -submit -cfg $HEDS_LABEL.crab.cfg
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if ((! $?)); then rm $HEDS_LABEL.crab.cfg; fi
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else
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echo "ERROR: " $HEDS_LABEL.crab.cfg " doesn't exist"
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fi
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;;
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3)
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echo "getting output and publishing crab jobs"
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crab -status -c $dailySkim
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crab -get -c $dailySkim
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crab -status -c $dailySkim
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crab -publish -c $dailySkim
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;;
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4)
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echo "option 4 "
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if [ -d $dailySkim ] #the crab job was run on at least 1 run
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then
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heds 4a
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heds 4b
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heds 4c
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heds 4d
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heds 4e
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heds 4f
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heds 4g
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heds 4h
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heds 4i
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else
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echo "copying only the log files about runs and selected-runs"
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heds 4g
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fi
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;;
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4a)
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###
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echo "...copying log files"
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if [ ! -d $HEDS_LOCALSTORE/$dailySkim/logs ]; then
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mkdir -p $HEDS_LOCALSTORE/$dailySkim/logs
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fi
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cp $dailySkim/res/*.std* $HEDS_LOCALSTORE/$dailySkim/logs
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if (($?)); then
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echo "ERROR: failed to copy log files in " $HEDS_LOCALSTORE/$dailySkim/logs;
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else
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echo "copied all logs file in " $HEDS_LOCALSTORE/$dailySkim/logs
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fi
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###
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tarName=$HEDS_LABEL.log.tgz
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cd $HEDS_LOCALSTORE/$dailySkim/logs/
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if (($?));then
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echo "ERROR: failed to go to " $HEDS_LOCALSTORE/$dailySkim/logs/
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else
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echo "compriming log files and copying " $tarName "them to castor"
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tar czvf $tarName *.std*
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rfcp $tarName $HEDS_CASTORFOLDER/skimV$HEDS_SKIMVERSION
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cd -
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fi
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;;
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4b)
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###
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echo "....creating skimReport"
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logName=$HEDS_LABEL.log
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$HEDSPATH/scripts/skimreport $HEDS_LOCALSTORE/$dailySkim/logs/*.stdout > $logName
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mv $logName $HEDS_FINALAREA/logs.SkimV$HEDS_SKIMVERSION
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;;
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4c)
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###
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echo "...coping files from the T2's SE"
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echo "dataset to retreive: " $dailySkim
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dbs search --url=https://cmsdbsprod.cern.ch:8443/cms_dbs_ph_analysis_02_writer/servlet/DBSServlet \
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## --query="find file,site where dataset=*HiggsSimpleSkimV3_18.04.2010-v1*" |grep .root >listFiles
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--query="find file,site where dataset=*$dailySkim*" |grep .root >listFiles
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IFS=$'\n'
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for j in $(cat listFiles)
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do
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echo "going to copy file: $j"
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#fileName=`echo $j |awk '{print$1}'| awk -FHiggsSimpleSkimV3_18.04.2010-v1/ '{print $2}' | awk -F/ '{print $2}'`
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fileName=`echo $j |awk '{print$1}'| awk -F$dailySkim/ '{print $2}' | awk -F/ '{print $2}'`
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storage_elem=`echo $j |awk '{print $2}'`
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remote_path=`echo $j|awk '{print $1}'`
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#echo "going to execute: " "lcg-cp -b -D srmv2 srm://$storage_elem:$HEDS_STORAGEPORT$HEDS_STORAGEPATH$remote_path file://$HEDS_LOCALSTORE/$dailySkim/$fileName"
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lcg-cp -b -D srmv2 srm://$storage_elem:$HEDS_STORAGEPORT$HEDS_STORAGEPATH$remote_path file://$HEDS_LOCALSTORE/$dailySkim/$fileName
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done
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rm listFiles
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nFiles=`ls $HEDS_LOCALSTORE/$dailySkim/*.root|wc -l`
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nJobs=`ls $HEDS_LOCALSTORE/$dailySkim/logs/CMSSW_*.stdout |wc -l`
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### TO BE FIXED!! this check isn't valid if some job selects zero events (no file is created)
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#if [ $nFiles == $nJobs ]
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#then
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# echo "GOOD: #files copied from hadoop matches #jobs in the CRAB task"
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#else
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# echo "ERROR: #files in hadoop doesn't match #jobs in the CRAB task"
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# exit
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#fi
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;;
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4d)
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###
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echo "... merging files"
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cp $HEDSPATH/scripts/prepareMerging.sh $HEDS_LOCALSTORE/$dailySkim
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cp $HEDSPATH/scripts/merge.py $HEDS_LOCALSTORE/$dailySkim
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cd $HEDS_LOCALSTORE/$dailySkim
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./prepareMerging.sh
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numberFilesToMerge=`ls *.root|wc -l`
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echo "numberFilesToMerge: " $numberFilesToMerge
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cmsRun merge.py >& merging.log
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cd -
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;;
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4e)
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###
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echo "... storing merged files"
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mergedName=$HEDS_LABEL.root
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mergedName=merged_$mergedName
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echo "mergedName: " $mergedName
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cd $HEDS_LOCALSTORE/$dailySkim
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if ((! $?)); then
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mv merged.root ../$mergedName
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echo "going to copy the merged file into: " $HEDS_CASTORFOLDER/skimV$HEDS_SKIMVERSION
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rfcp ../$mergedName $HEDS_CASTORFOLDER/skimV$HEDS_SKIMVERSION/
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cd -
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fi
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;;
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4f)
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###
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echo "... prepare detailed list of skimmed events"
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cp $HEDSPATH/scripts/listSkimmedEvent.C $HEDS_LOCALSTORE
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cd $HEDS_LOCALSTORE
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root.exe -b -q "listSkimmedEvent.C+(\"$HEDS_LABEL\")"
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listSkimmedEventsPath=$HEDS_FINALAREA/logs.SkimV$HEDS_SKIMVERSION/$HEDS_LABEL.listSkimmedEvents
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if [ ! -d $listSkimmedEventsPath ]
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then
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mkdir $listSkimmedEventsPath
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fi
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listDetailedLogs=`ls $HEDS_LABEL*`
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for j in $listDetailedLogs
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do
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echo "preparing log " $j
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# sort entries by date
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cat $j |sort -k7 > tmp
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mv tmp $j
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mv $j $listSkimmedEventsPath
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done
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cd -
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;;
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4g)
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###
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echo "... copying logs about run selection"
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mv $HEDS_LABEL.runselection $HEDS_FINALAREA/logs.SkimV$HEDS_SKIMVERSION
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mv $HEDS_LABEL.runinterval $HEDS_FINALAREA/logs.SkimV$HEDS_SKIMVERSION
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;;
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4h)
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###
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| 281 |
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echo "... preparing detailed event summary"
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input=$HEDS_LOCALSTORE/merged_$HEDS_LABEL.root
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echo "input: " $input
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sed s#INPUT#$input# $HEDSPATH/scripts/dumpEvent.py > dumpEvent.py
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cmsRun dumpEvent.py >& $HEDS_LABEL.dumperLog
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$HEDSPATH/scripts/parseDumperOutput.sh 1 >& $HEDS_LABEL.dump
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$HEDSPATH/scripts/parseDumperOutput.sh 2
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rm dumpEvent.py
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rm $HEDS_LABEL.dumperLog
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rm $HEDS_LABEL.dump
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;;
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4i)
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###
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| 294 |
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echo "... preparing html tables"
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if [ ! -e $HEDS_FINALAREA/logs.SkimV$HEDS_SKIMVERSION/FirstPage.php ];then
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echo "create first version of FirstTable.sh"
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$HEDSPATH/scripts/editFirstTable.sh create
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fi
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$HEDSPATH/scripts/createTableSkimDetails.sh add
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$HEDSPATH/scripts/createTableSkimSummary.sh
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$HEDSPATH/scripts/editFirstTable.sh add below
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;;
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5a)
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| 304 |
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echo ".... preparing event display server"
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| 305 |
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mkdir $HEDS_LABEL.shots
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port=3005
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$HEDSPATH/scripts/eventDisplayServer.sh $port &
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;;
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5b)
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| 310 |
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echo "getting snapshots"
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port=3005
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file=$HEDS_LOCALSTORE/merged_$HEDS_LABEL.root
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echo "$file" | nc -w 10 localhost $port
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;;
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|
5c)
|
| 316 |
|
|
echo "moving snapshots"
|
| 317 |
|
|
mv $HEDS_LABEL.shots $HEDS_FINALAREA/logs.SkimV$HEDS_SKIMVERSION/
|
| 318 |
|
|
cp $HEDSPATH/scripts/indexFileForDetailedSnapShots.php \
|
| 319 |
|
|
$HEDS_FINALAREA/logs.SkimV$HEDS_SKIMVERSION/$HEDS_LABEL.shots/index.php
|
| 320 |
|
|
;;
|
| 321 |
|
|
|
| 322 |
|
|
|
| 323 |
|
|
##################### after the crab part is done ###################
|
| 324 |
|
|
99) echo "Doing bakcup of $HEDS_FINALAREA"
|
| 325 |
|
|
date=`date +%k\.%M\.%S_%e\.%m\.%Y`
|
| 326 |
|
|
fileName="HiggsIES.BAK."$date".tgz"
|
| 327 |
|
|
echo "file name: " $fileName
|
| 328 |
|
|
tar -czvf $fileName $HEDS_FINALAREA
|
| 329 |
|
|
mv $fileName $HEDS_FINALAREA/..
|
| 330 |
|
|
;;
|
| 331 |
|
|
|
| 332 |
|
|
|
| 333 |
|
|
*)
|
| 334 |
|
|
echo "option not defined"
|
| 335 |
|
|
;;
|
| 336 |
|
|
esac |
