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Comparing UserCode/Jeng/PVStudy/plugins/PVStudy.cc (file contents):
Revision 1.8 by jengbou, Fri Oct 16 00:11:30 2009 UTC vs.
Revision 1.15 by jengbou, Fri Dec 4 21:20:26 2009 UTC

# Line 12 | Line 12 | Implementation:
12   */
13   //
14   // Original Author:  "Geng-yuan Jeng/UC Riverside"
15 < //                    "Yanyan Gao/Fermilab ygao@fnal.gov"
15 > //                   "Yanyan Gao/Fermilab ygao@fnal.gov"
16   //         Created:  Thu Aug 20 11:55:40 CDT 2009
17   // $Id$
18   //
# Line 25 | Line 25 | Implementation:
25   #include <vector>
26   #include <iostream>
27   #include <sstream>
28 + #include <algorithm>
29  
30   // user include files
31   #include "FWCore/Framework/interface/Frameworkfwd.h"
# Line 71 | Line 72 | PVStudy::PVStudy(const edm::ParameterSet
72    splitTrackCollection2Tag_  = iConfig.getUntrackedParameter<edm::InputTag>("splitTrackCollection2");
73    vertexCollectionTag_       = iConfig.getUntrackedParameter<edm::InputTag>("vertexCollection");
74    splitVertexCollection1Tag_ = iConfig.getUntrackedParameter<edm::InputTag>("splitVertexCollection1");
75 <  splitVertexCollection2Tag_ = iConfig.getUntrackedParameter<edm::InputTag>("splitVertexCollection2");
75 >  splitVertexCollection2Tag_ = iConfig.getUntrackedParameter<edm::InputTag>("splitVertexCollection2");  
76 >  pixelVertexCollectionTag_  = iConfig.getParameter<edm::InputTag>("pixelVertexCollectionTag");  
77    verbose_                   = iConfig.getUntrackedParameter<bool>("verbose",false);
78    realData_                  = iConfig.getUntrackedParameter<bool>("realData",false);
79    analyze_                   = iConfig.getUntrackedParameter<bool>("analyzeOnTheFly",false);
80    saventuple_                = iConfig.getUntrackedParameter<bool>("saventuple",false);  
81    outputfilename_            = iConfig.getUntrackedParameter<string>("OutputFileName");
82    ntrkdiffcut_               = iConfig.getUntrackedParameter<double>("ntrkdiffcut");
83 +  zsigncut_                  = iConfig.getUntrackedParameter<int>("zsigncut");
84    nTrkMin_                   = iConfig.getUntrackedParameter<int>("nTrkMin");
85    nTrkMax_                   = iConfig.getUntrackedParameter<int>("nTrkMax");
86 +  histoFileName_             = iConfig.getUntrackedParameter<std::string> ("histoFileName");
87  
88    //now do what ever initialization is needed
89    pvinfo.clear();
90  
91 <
91 >  
92    // Specify the data mode vector
93    if(realData_) datamode.push_back(0);
94    else {
# Line 102 | Line 106 | PVStudy::PVStudy(const edm::ParameterSet
106      ftree_->Branch("residual",&fres_,"fres_[3]/D");
107      ftree_->Branch("error",&ferror_,"ferror_[3]/D");
108      ftree_->Branch("nTrkPV",&fntrk_,"fntrk_/I");
109 <    ftree_->Branch("nrecPV",&nrecPV_,"nrecPV_/I");
110 <    ftree_->Branch("nrecPV1_spl",&nrecPV1_spl_,"nrecPV1_spl_/I");
111 <    ftree_->Branch("nrecPV2_spl",&nrecPV2_spl_,"nrecPV2_spl_/I");
112 <  
113 <    // If it is MC, get the resA, resB
114 <    if(!realData_) {
115 <      ftree_->Branch("residual_spl1_mct",&fres_spl1_mct_,"fres_spl1_mct_[3]/D");
116 <      ftree_->Branch("error_spl1_mct",&ferror_spl1_mct_,"ferror_spl1_mct_[3]/D");
117 <      ftree_->Branch("nTrkPV_spl1_mct",&fntrk_spl1_mct_,"fntrk_spl1_mct_/I");
118 <      ftree_->Branch("residual_spl2_mct",&fres_spl2_mct_,"fres_spl2_mct_[3]/D");
119 <      ftree_->Branch("error_spl2_mct",&ferror_spl2_mct_,"ferror_spl2_mct_[3]/D");
120 <      ftree_->Branch("nTrkPV_spl2_mct",&fntrk_spl2_mct_,"fntrk_spl2_mct_/I");
121 <      ftree_->Branch("residual_mct",&fres_mct_,"fres_mct_[3]/D");
122 <      ftree_->Branch("error_mct",&ferror_mct_,"ferror_mct_[3]/D");
123 <      ftree_->Branch("nTrkPV_mct",&fntrk_mct_,"fntrk_mct_/I");
109 >
110 >    // pvtxtree_ analyzing the pvtxs ootb
111 >    pvtxtree_ = new TTree("pvtxtree","pvtxtree");
112 >    //pvtx using all tracks
113 >    pvtxtree_->Branch("nrecPV",&nrecPV_,"nrecPV/I");
114 >    pvtxtree_->Branch("nTrkPV",&nTrkPV_,"nTrkPV[nrecPV]/I");
115 >    pvtxtree_->Branch("sumptsq",&sumptsq_,"sumptsq[nrecPV]/D");    
116 >    pvtxtree_->Branch("isValid",&isValid_,"isValid/I");
117 >    pvtxtree_->Branch("isFake",&isFake_,"isFake/I");
118 >    pvtxtree_->Branch("recx",&recx_,"recx[nrecPV]/D");
119 >    pvtxtree_->Branch("recy",&recy_,"recy[nrecPV]/D");
120 >    pvtxtree_->Branch("recz",&recz_,"recz[nrecPV]/D");
121 >    pvtxtree_->Branch("recx_err",&recx_err_,"recx_err[nrecPV]/D");
122 >    pvtxtree_->Branch("recy_err",&recy_err_,"recy_err[nrecPV]/D");
123 >    pvtxtree_->Branch("recz_err",&recz_err_,"recz_err[nrecPV]/D");
124 >
125 >    pvtxtree_->Branch("min_zsep",&min_zsep_,"min_zsep/D");
126 >    pvtxtree_->Branch("min_ntrksep",&min_ntrksep_,"min_ntrksep/D");
127 >    pvtxtree_->Branch("min_sumpt2sep",&min_sumpt2sep_,"min_sumpt2sep/D");
128 >
129 >    //pvtx using splittracks1
130 >    pvtxtree_->Branch("nrecPV1_spl",&nrecPV1_spl_,"nrecPV1_spl/I");
131 >    pvtxtree_->Branch("nTrkPV1_spl",&nTrkPV1_spl_,"nTrkPV1_spl[nrecPV1_spl]/I");  
132 >    pvtxtree_->Branch("sumptsq1_spl",&sumptsq1_spl_,"sumptsq1_spl[nrecPV1_spl]/D");  
133 >    pvtxtree_->Branch("isValid1_spl",&isValid1_spl_,"isValid1_spl/I");
134 >    pvtxtree_->Branch("isFake1_spl",&isFake1_spl_,"isFake1_spl/I");
135 >    pvtxtree_->Branch("recx1_spl",&recx1_spl_,"recx1_spl[nrecPV1_spl]/D");
136 >    pvtxtree_->Branch("recy1_spl",&recy1_spl_,"recy1_spl[nrecPV1_spl]/D");
137 >    pvtxtree_->Branch("recz1_spl",&recz1_spl_,"recz1_spl[nrecPV1_spl]/D");
138 >    pvtxtree_->Branch("recx1_err_spl",&recx1_err_spl_,"recx1_err_spl[nrecPV1_spl]/D");
139 >    pvtxtree_->Branch("recy1_err_spl",&recy1_err_spl_,"recy1_err_spl[nrecPV1_spl]/D");
140 >    pvtxtree_->Branch("recz1_err_spl",&recz1_err_spl_,"recz1_err_spl[nrecPV1_spl]/D");  
141 >  
142 >    //pvtx using splittracks2
143 >    pvtxtree_->Branch("nrecPV2_spl",&nrecPV2_spl_,"nrecPV2_spl/I");
144 >    pvtxtree_->Branch("nTrkPV2_spl",&nTrkPV2_spl_,"nTrkPV2_spl[nrecPV2_spl]/I");    
145 >    pvtxtree_->Branch("sumptsq2_spl",&sumptsq2_spl_,"sumptsq2_spl[nrecPV2_spl]/D");  
146 >    pvtxtree_->Branch("isValid2_spl",&isValid2_spl_,"isValid2_spl/I");
147 >    pvtxtree_->Branch("isFake2_spl",&isFake2_spl_,"isFake2_spl/I");
148 >    pvtxtree_->Branch("recx2_spl",&recx2_spl_,"recx2_spl[nrecPV2_spl]/D");
149 >    pvtxtree_->Branch("recy2_spl",&recy2_spl_,"recy2_spl[nrecPV2_spl]/D");
150 >    pvtxtree_->Branch("recz2_spl",&recz2_spl_,"recz2_spl[nrecPV2_spl]/D");
151 >    pvtxtree_->Branch("recx2_err_spl",&recx2_err_spl_,"recx2_err_spl[nrecPV2_spl]/D");
152 >    pvtxtree_->Branch("recy2_err_spl",&recy2_err_spl_,"recy2_err_spl[nrecPV2_spl]/D");
153 >    pvtxtree_->Branch("recz2_err_spl",&recz2_err_spl_,"recz2_err_spl[nrecPV2_spl]/D");  
154 >    
155 >    //pixeVertices
156 >    pvtxtree_->Branch("nrecPV_pxlpvtx",&nrecPV_pxlpvtx_,"nrecPV_pxlpvtx/I");
157 >    pvtxtree_->Branch("nTrkPV_pxlpvtx",&nTrkPV_pxlpvtx_,"nTrkPV_pxlpvtx[nrecPV_pxlpvtx]/I");    
158 >    pvtxtree_->Branch("sumptsq_pxlpvtx",&sumptsq_pxlpvtx_,"sumptsq_pxlpvtx[nrecPV_pxlpvtx]/D");  
159 >    pvtxtree_->Branch("isValid_pxlpvtx",&isValid_pxlpvtx_,"isValid_pxlpvtx/I");
160 >    pvtxtree_->Branch("isFake_pxlpvtx",&isFake_pxlpvtx_,"isFake_pxlpvtx/I");
161 >    pvtxtree_->Branch("recx_pxlpvtx",&recx_pxlpvtx_,"recx_pxlpvtx[nrecPV_pxlpvtx]/D");
162 >    pvtxtree_->Branch("recy_pxlpvtx",&recy_pxlpvtx_,"recy_pxlpvtx[nrecPV_pxlpvtx]/D");
163 >    pvtxtree_->Branch("recz_pxlpvtx",&recz_pxlpvtx_,"recz_pxlpvtx[nrecPV_pxlpvtx]/D");
164 >    pvtxtree_->Branch("recx_err_pxlpvtx",&recx_err_pxlpvtx_,"recx_err_pxlpvtx[nrecPV_pxlpvtx]/D");
165 >    pvtxtree_->Branch("recy_err_pxlpvtx",&recy_err_pxlpvtx_,"recy_err_pxlpvtx[nrecPV_pxlpvtx]/D");
166 >    pvtxtree_->Branch("recz_err_pxlpvtx",&recz_err_pxlpvtx_,"recz_err_pxlpvtx[nrecPV_pxlpvtx]/D");  
167 >
168 >    //Fill the variables in the twovtx pair (recvtx1, recvtx2)
169 >    pvtxtree_->Branch("nrecPV_twovtx",&nrecPV_twovtx_,"nrecPV_twovtx/I");
170 >    pvtxtree_->Branch("nTrkPV1_spl_twovtx",&nTrkPV1_spl_twovtx_,"nTrkPV1_spl_twovtx[nrecPV_twovtx]/I");
171 >    pvtxtree_->Branch("nTrkPV2_spl_twovtx",&nTrkPV2_spl_twovtx_,"nTrkPV2_spl_twovtx[nrecPV_twovtx]/I");
172 >    pvtxtree_->Branch("sumptsq1_spl_twovtx",&sumptsq1_spl_twovtx_,"sumptsq1_spl_twovtx[nrecPV_twovtx]/D");
173 >    pvtxtree_->Branch("sumptsq2_spl_twovtx",&sumptsq2_spl_twovtx_,"sumptsq2_spl_twovtx[nrecPV_twovtx]/D");
174 >    pvtxtree_->Branch("nTrkPV_twovtx",&nTrkPV_twovtx_,"nTrkPV_twovtx[nrecPV_twovtx]/I");
175 >    pvtxtree_->Branch("deltax_twovtx",&deltax_twovtx_,"deltax_twovtx[nrecPV_twovtx]/D");
176 >    pvtxtree_->Branch("deltay_twovtx",&deltay_twovtx_,"deltay_twovtx[nrecPV_twovtx]/D");
177 >    pvtxtree_->Branch("deltaz_twovtx",&deltaz_twovtx_,"deltaz_twovtx[nrecPV_twovtx]/D");
178 >    pvtxtree_->Branch("errx_twovtx",&errx_twovtx_,"errx_twovtx[nrecPV_twovtx]/D");
179 >    pvtxtree_->Branch("erry_twovtx",&erry_twovtx_,"erry_twovtx[nrecPV_twovtx]/D");
180 >    pvtxtree_->Branch("errz_twovtx",&errz_twovtx_,"errz_twovtx[nrecPV_twovtx]/D");
181 >    pvtxtree_->Branch("pullx_twovtx",&pullx_twovtx_,"pullx_twovtx[nrecPV_twovtx]/D");
182 >    pvtxtree_->Branch("pully_twovtx",&pully_twovtx_,"pully_twovtx[nrecPV_twovtx]/D");
183 >    pvtxtree_->Branch("pullz_twovtx",&pullz_twovtx_,"pullz_twovtx[nrecPV_twovtx]/D");
184 >    
185 >    // MC variables
186 >    if(!realData_) {  
187 >      pvtxtree_->Branch("nsimPV",&nsimPV_,"nsimPV/I");
188 >      pvtxtree_->Branch("nsimTrkPV",&nsimTrkPV_,"nsimTrkPV[nsimPV]/I");
189 >      pvtxtree_->Branch("simx",&simx_,"simx[nsimPV]/D");
190 >      pvtxtree_->Branch("simy",&simy_,"simy[nsimPV]/D");
191 >      pvtxtree_->Branch("simz",&simz_,"simz[nsimPV]/D");
192 >      pvtxtree_->Branch("simptsq",&simptsq_,"simptsq[nsimPV]/D");
193 >
194 >      // For pvtxs with all the tracks
195 >      pvtxtree_->Branch("nrecPV_mct",&nrecPV_mct_,"nrecPV_mct/I");
196 >      pvtxtree_->Branch("deltax_mct",&deltax_mct_,"deltax_mct[nrecPV_mct]/D");
197 >      pvtxtree_->Branch("deltay_mct",&deltay_mct_,"deltay_mct[nrecPV_mct]/D");
198 >      pvtxtree_->Branch("deltaz_mct",&deltaz_mct_,"deltaz_mct[nrecPV_mct]/D");
199 >      pvtxtree_->Branch("pullx_mct",&pullx_mct_,"pullx_mct[nrecPV_mct]/D");
200 >      pvtxtree_->Branch("pully_mct",&pully_mct_,"pully_mct[nrecPV_mct]/D");
201 >      pvtxtree_->Branch("pullz_mct",&pullz_mct_,"pullz_mct[nrecPV_mct]/D");
202 >      // For pvtxs with splittracks1
203 >      pvtxtree_->Branch("nrecPV_spl1_mct",&nrecPV_spl1_mct_,"nrecPV_spl1_mct/I");
204 >      pvtxtree_->Branch("deltax_spl1_mct",&deltax_spl1_mct_,"deltax_spl1_mct[nrecPV_spl1_mct]/D");
205 >      pvtxtree_->Branch("deltay_spl1_mct",&deltay_spl1_mct_,"deltay_spl1_mct[nrecPV_spl1_mct]/D");
206 >      pvtxtree_->Branch("deltaz_spl1_mct",&deltaz_spl1_mct_,"deltaz_spl1_mct[nrecPV_spl1_mct]/D");
207 >      pvtxtree_->Branch("pullx_spl1_mct",&pullx_spl1_mct_,"pullx_spl1_mct[nrecPV_spl1_mct]/D");
208 >      pvtxtree_->Branch("pully_spl1_mct",&pully_spl1_mct_,"pully_spl1_mct[nrecPV_spl1_mct]/D");
209 >      pvtxtree_->Branch("pullz_spl1_mct",&pullz_spl1_mct_,"pullz_spl1_mct[nrecPV_spl1_mct]/D");
210 >      // For pvtxs with splittracks1
211 >      pvtxtree_->Branch("nrecPV_spl2_mct",&nrecPV_spl2_mct_,"nrecPV_spl2_mct/I");
212 >      pvtxtree_->Branch("deltax_spl2_mct",&deltax_spl2_mct_,"deltax_spl2_mct[nrecPV_spl2_mct]/D");
213 >      pvtxtree_->Branch("deltay_spl2_mct",&deltay_spl2_mct_,"deltay_spl2_mct[nrecPV_spl2_mct]/D");
214 >      pvtxtree_->Branch("deltaz_spl2_mct",&deltaz_spl2_mct_,"deltaz_spl2_mct[nrecPV_spl2_mct]/D");
215 >      pvtxtree_->Branch("pullx_spl2_mct",&pullx_spl2_mct_,"pullx_spl2_mct[nrecPV_spl2_mct]/D");
216 >      pvtxtree_->Branch("pully_spl2_mct",&pully_spl2_mct_,"pully_spl2_mct[nrecPV_spl2_mct]/D");
217 >      pvtxtree_->Branch("pullz_spl2_mct",&pullz_spl2_mct_,"pullz_spl2_mct[nrecPV_spl2_mct]/D");
218      }
219    }
220  
123  edm::Service<TFileService> fs;
124  TFileDirectory subDir = fs->mkdir( "Summary" );
125  TFileDirectory subDir1 = fs->mkdir( "Others" );
126  //   TFileDirectory subSubDir = subDir.mkdir( "mySubSubDirectory" );
127
221    setRootStyle();
222 <  
223 <  //Book histograms for track and pvtx parameters for each splitted pvtx
224 <  //i=0 : x (as in unsplit track collection)
225 <  //i=1 : x1_spl_
226 <  //i=2 : x2_spl_
227 <  
228 <  for(int i=0;i<3;i++)
229 <    {  
230 <      string suffix;
231 <      if(i == 0) suffix = "";
232 <      else {
233 <        stringstream ss;
234 <        ss << i;
235 <        suffix =ss.str()+"_spl";  
236 <      }
237 <      h["nTrk"+suffix]   = subDir.make<TH1D>(TString("nTrk"+suffix), TString("Num of rec tracks"+suffix),300,0,300);
238 <      h["trkPt"+suffix]  = subDir.make<TH1D>(TString("trkPt"+suffix), TString("Pt of rec tracks "+suffix),100,0,100);
239 <      h["trkEta"+suffix] = subDir.make<TH1D>(TString("trkEta"+suffix), TString("#Eta of rec tracks "+suffix),100,-3,3);
240 <      h["trkPhi"+suffix] = subDir.make<TH1D>(TString("trkPhi"+suffix), TString("#Phi of rec tracks "+suffix),100,-3.2,3.2);
241 <      h["trkDxy"+suffix] = subDir.make<TH1D>(TString("trkDxy"+suffix), TString("Dxy of rec tracks "+suffix),100,-5,5);  
242 <      h["trkDz"+suffix] = subDir.make<TH1D>(TString("trkDz"+suffix), TString("Dz of rec tracks "+suffix),100,-50,50);  
243 <      
244 <      h["nTrkPV"+suffix]   = subDir.make<TH1D>(TString("nTrkPV"+suffix), TString("Num of rec tracks in PV"+suffix),300,0,300);
245 <      h["trkPtPV"+suffix]  = subDir.make<TH1D>(TString("trkPtPV"+suffix), TString("Pt of rec tracks in "+suffix),100,0,100);
246 <      h["trkEtaPV"+suffix] = subDir.make<TH1D>(TString("trkEtaPV"+suffix), TString("#Eta of rec tracks in PV"+suffix),100,-3,3);
247 <      h["trkPhiPV"+suffix] = subDir.make<TH1D>(TString("trkPhiPV"+suffix), TString("#Phi of rec tracks in PV"+suffix),100,-3.2,3.2);
155 <      h["trkDxyPV"+suffix] = subDir.make<TH1D>(TString("trkDxyPV"+suffix), TString("Dxy of rec tracks in PV"+suffix),100,-5,5);  
156 <      h["trkDzPV"+suffix] = subDir.make<TH1D>(TString("trkDzPV"+suffix), TString("Dz of rec tracks "+suffix),100,-50,50);
157 <      h["nrecPV"+suffix]   = subDir.make<TH1D>(TString("nrecPV"+suffix), TString("Num of rec pvtx"+suffix),50,0,50);    
158 <      suffix.clear();
222 >
223 >  // Create a root file for histograms
224 >  theFile = new TFile(histoFileName_.c_str(), "RECREATE");
225 >  // make diretories
226 >  theFile->mkdir("Summary");
227 >  theFile->cd();
228 >  theFile->mkdir("Others");
229 >  theFile->cd();
230 >  if (analyze_) {
231 >    theFile->mkdir("Results");
232 >    theFile->cd();
233 >  }
234 >
235 >  // Book Histograms:
236 >  h_pvtrk   = new PVHistograms();
237 >  h_pixvtx  = new PVHistograms();
238 >  h_misc    = new PVHistograms();
239 >  h_summary = new PVHistograms();
240 >  h_others  = new PVHistograms();
241 >
242 >  for(int i=0;i<3;i++) {  
243 >    if(i == 0) h_pvtrk->Init("pvTrk");
244 >    else {
245 >      stringstream ss;
246 >      ss << i;
247 >      h_pvtrk->Init("pvTrk",ss.str(),"spl");
248      }
249 <  h["nrecPVDiff"]     = subDir.make<TH1D>("nrecPVDiff","nrecPV1-nRecPV2",21,-10.5,10.5);
250 <  h["nTrkPVDiff"]     = subDir.make<TH1D>("nTrkPVDiff","nTrkPV1-nTrkPV2",41,-20.5,20.5);
251 <  h["nTrkPVRelDiff"]  = subDir.make<TH1D>("nTrkPVRelDiff","(nTrkPV1-nTrkPV2)/(nTrkPV1+nTrkPV2)",100,-1,1);
252 <  
249 >  }
250 >  h_pixvtx->Init("pixVtx");
251 >  h_misc->Init("misc");
252 >
253 >  // Book MC only plots
254 >  if (!realData_) {
255 >    h_gen = new PVHistograms();
256 >    h_gen->Init("generator");
257 >  }
258 >  if (analyze_) h_ana = new PVHistograms();
259 >
260    //Book histograms sensitive to data/mc
261    for (vector<int>::const_iterator it= datamode.begin(); it != datamode.end() ; ++it) {
262      string suffix;
263 <    if(verbose_)  cout<<"datamode = "<< *it<<endl;
263 >    edm::LogInfo("Debug")<<"datamode = "<< *it<<endl;
264      switch(*it) {
265      case 0: suffix = "";
266        break;
# Line 175 | Line 271 | PVStudy::PVStudy(const edm::ParameterSet
271      case 3: suffix = "_mct";
272        break;
273      }
274 <    h["deltax"+suffix] = subDir.make<TH1D>(TString("deltax"+suffix), TString("x-residual pvtx"+suffix),800,-0.04,0.04);
179 <    h["deltay"+suffix] = subDir.make<TH1D>(TString("deltay"+suffix), TString("y-residual pvtx"+suffix),800,-0.04,0.04);
180 <    h["deltaz"+suffix] = subDir.make<TH1D>(TString("deltaz"+suffix), TString("z-residual pvtx"+suffix),800,-0.04,0.04);
181 <    h["pullx"+suffix]  = subDir.make<TH1D>(TString("pullx"+suffix), TString("x-pull pvtx"+suffix),800,-10,10);
182 <    h["pully"+suffix]  = subDir.make<TH1D>(TString("pully"+suffix), TString("y-pull pvtx"+suffix),800,-10,10);
183 <    h["pullz"+suffix]  = subDir.make<TH1D>(TString("pullz"+suffix), TString("z-pull pvtx"+suffix),800,-10,10);
184 <    h["errPVx"+suffix] = subDir.make<TH1D>(TString("errPVx"+suffix), TString("X"+suffix+" vertex error"),100,0.,0.02);
185 <    h["errPVy"+suffix] = subDir.make<TH1D>(TString("errPVy"+suffix), TString("Y"+suffix+" vertex error"),100,0.,0.02);
186 <    h["errPVz"+suffix] = subDir.make<TH1D>(TString("errPVz"+suffix), TString("Z"+suffix+" vertex error"),100,0.,0.02);
274 >    h_summary->Init("summary",suffix);
275      
276      // Book residual, error and pull histograms for each nTrk bin
277      for (int ntrk=nTrkMin_;ntrk<=nTrkMax_;++ntrk) {
278        stringstream ss;
279        ss << ntrk;
280 <      string suffix2 = suffix+"_"+ss.str();
281 <      h["deltax"+suffix2]  = subDir1.make<TH1D>(TString("deltax"+suffix2), TString("x-residual of pvtx"+suffix),100,-0.02,0.02);
282 <      h["deltax"+suffix2]->GetXaxis()->SetTitle("cm");
195 <      h["deltay"+suffix2]  = subDir1.make<TH1D>(TString("deltay"+suffix2), TString("y-residual of pvtx"+suffix),100,-0.02,0.02);
196 <      h["deltay"+suffix2]->GetXaxis()->SetTitle("cm");
197 <      h["deltaz"+suffix2]  = subDir1.make<TH1D>(TString("deltaz"+suffix2), TString("z-residual of pvtx"+suffix),100,-0.02,0.02);
198 <      h["deltaz"+suffix2]->GetXaxis()->SetTitle("cm");
199 <      h["pullx"+suffix2] = subDir1.make<TH1D>(TString("pullx"+suffix2), TString("x-pull of pvtx"+suffix),100,-10.,10.);
200 <      h["pully"+suffix2] = subDir1.make<TH1D>(TString("pully"+suffix2), TString("y-pull of pvtx"+suffix),100,-10.,10.);
201 <      h["pullz"+suffix2] = subDir1.make<TH1D>(TString("pullz"+suffix2), TString("z-pull of pvtx"+suffix),100,-10.,10.);
202 <      h["errPVx"+suffix2] = subDir1.make<TH1D>(TString("errPVx"+suffix2), TString("X"+suffix+" vertex error"),100,0.,0.02);
203 <      h["errPVy"+suffix2] = subDir1.make<TH1D>(TString("errPVy"+suffix2), TString("Y"+suffix+" vertex error"),100,0.,0.02);
204 <      h["errPVz"+suffix2] = subDir1.make<TH1D>(TString("errPVz"+suffix2), TString("Z"+suffix+" vertex error"),100,0.,0.02);
205 <      suffix2.clear();
206 <    } // End of   for (int ntrk=nTrkMin_;ntrk<=nTrkMax_;++ntrk) {
207 <    
280 >      h_others->Init("others",suffix,ss.str());
281 >    }
282 >
283      // Book residual and pull histograms only when analyzeOntheFly is enabled
284 <    if(analyze_) {
210 <      h2["resx"+suffix+"_nTrk"]= subDir.make<TH2D>(TString("resx"+suffix+"_nTrk"), TString("x-resolution vs number of tracks in pvtx"+suffix),150,0,150,400,0.,200);
211 <      h2["resx"+suffix+"_nTrk"]->SetMarkerStyle(21);
212 <      h2["resx"+suffix+"_nTrk"]->SetMarkerColor(4);
213 <      h2["resx"+suffix+"_nTrk"]->GetXaxis()->SetTitle("Num of tracks");
214 <      h2["resx"+suffix+"_nTrk"]->GetYaxis()->SetTitle("#mum");
215 <      h2["resy"+suffix+"_nTrk"]= subDir.make<TH2D>(TString("resy"+suffix+"_nTrk"), TString("y-resolution vs number of tracks in pvtx"+suffix),150,0,150,400,0.,200);
216 <      h2["resy"+suffix+"_nTrk"]->SetMarkerStyle(21);
217 <      h2["resy"+suffix+"_nTrk"]->SetMarkerColor(4);
218 <      h2["resy"+suffix+"_nTrk"]->GetXaxis()->SetTitle("Num of tracks");
219 <      h2["resy"+suffix+"_nTrk"]->GetYaxis()->SetTitle("#mum");
220 <      h2["resz"+suffix+"_nTrk"]= subDir.make<TH2D>(TString("resz"+suffix+"_nTrk"), TString("z-resolution vs number of tracks in pvtx"+suffix),150,0,150,400,0.,200);
221 <      h2["resz"+suffix+"_nTrk"]->SetMarkerStyle(21);
222 <      h2["resz"+suffix+"_nTrk"]->SetMarkerColor(4);
223 <      h2["resz"+suffix+"_nTrk"]->GetXaxis()->SetTitle("Num of tracks");
224 <      h2["resz"+suffix+"_nTrk"]->GetYaxis()->SetTitle("#mum");
225 <      h2["pullx"+suffix+"_nTrk"]= subDir.make<TH2D>(TString("pullx"+suffix+"_nTrk"), TString("x-pull vs number of tracks"+suffix),150,0,150,100,0.,2.);
226 <      h2["pullx"+suffix+"_nTrk"]->SetMarkerStyle(21);
227 <      h2["pullx"+suffix+"_nTrk"]->SetMarkerColor(4);
228 <      h2["pullx"+suffix+"_nTrk"]->SetBit(TH1::kCanRebin);
229 <      h2["pullx"+suffix+"_nTrk"]->GetXaxis()->SetTitle("Num of tracks");
230 <      h2["pully"+suffix+"_nTrk"]= subDir.make<TH2D>(TString("pully"+suffix+"_nTrk"), TString("y-pull vs number of tracks"+suffix),150,0,150,100,0.,2.);
231 <      h2["pully"+suffix+"_nTrk"]->SetMarkerStyle(21);
232 <      h2["pully"+suffix+"_nTrk"]->SetMarkerColor(4);
233 <      h2["pully"+suffix+"_nTrk"]->SetBit(TH1::kCanRebin);
234 <      h2["pully"+suffix+"_nTrk"]->GetXaxis()->SetTitle("Num of tracks");
235 <      h2["pullz"+suffix+"_nTrk"]= subDir.make<TH2D>(TString("pullz"+suffix+"_nTrk"), TString("x-pull vs number of tracks"+suffix),150,0,150,100,0.,2.);
236 <      h2["pullz"+suffix+"_nTrk"]->SetMarkerStyle(21);
237 <      h2["pullz"+suffix+"_nTrk"]->SetMarkerColor(4);
238 <      h2["pullz"+suffix+"_nTrk"]->SetBit(TH1::kCanRebin);
239 <      h2["pullz"+suffix+"_nTrk"]->GetXaxis()->SetTitle("Num of tracks");
240 <    } // End of   if(analyze_) {
284 >    if(analyze_) h_ana->InitA("analysis",suffix,"nTrk",nTrkMin_,nTrkMax_);
285      suffix.clear();
286 <  } // End of Book histograms sensitive to data/mc  
287 <  // Book MC only plots
244 <  if (!realData_) {  
245 <    h["genPart_T"]      = subDir.make<TH1D>("genPart_T","t component of gen particles",300,-0.5,0.5);
246 <    h["genPart_T"]->GetXaxis()->SetTitle("t (nanosecond)");
247 <    h["genPart_cT"]     = subDir.make<TH1D>("genPart_cT","ct component of gen particles",300,-150.,150.);
248 <    h["genPart_cT"]->GetXaxis()->SetTitle("ct (mm)");    
249 <    h["nsimPV"]         = subDir.make<TH1D>("nsimPV","Num of sim PV",51,-0.5,50.5);  
250 <  }
286 >  } // End of Book histograms sensitive to data/mc    
287 >
288   }
289  
290   PVStudy::~PVStudy()
291   {
292 <
293 <  // do anything here that needs to be done at desctruction time
294 <  // (e.g. close files, deallocate resources etc.)
292 >  theFile->cd();
293 >  theFile->cd("Summary");
294 >  h_pvtrk->Save();
295 >  h_pixvtx->Save();
296 >  h_misc->Save();
297 >  h_summary->Save();
298 >  if (!realData_)
299 >    h_gen->Save();
300 >  if (analyze_) {
301 >    theFile->cd();
302 >    theFile->cd("Results");
303 >    h_ana->Save();
304 >  }
305 >  theFile->cd();
306 >  theFile->cd("Others");
307 >  h_others->Save();
308  
309 +  theFile->Close();
310   }
311  
312   void PVStudy::setRootStyle() {
# Line 295 | Line 346 | std::vector<PVStudy::simPrimaryVertex> P
346    std::vector<PVStudy::simPrimaryVertex> simpv;
347    const HepMC::GenEvent* evt=evtMC->GetEvent();
348    if (evt) {
349 <    if(verbose_) {
350 <      cout << "process id " << evt->signal_process_id()<<endl;
351 <      cout << "signal process vertex " << ( evt->signal_process_vertex() ?
352 <                                            evt->signal_process_vertex()->barcode() : 0 )   <<endl;
302 <      cout << "number of vertices " << evt->vertices_size() << endl;
303 <    }
349 >    edm::LogInfo("SimPVs") << "[getSimPVs] process id " << evt->signal_process_id()<<endl;
350 >    edm::LogInfo("SimPVs") << "[getSimPVs] signal process vertex " << ( evt->signal_process_vertex() ?
351 >                                                                        evt->signal_process_vertex()->barcode() : 0 ) <<endl;
352 >    edm::LogInfo("SimPVs") << "[getSimPVs] number of vertices " << evt->vertices_size() << endl;
353  
354      int idx=0; int npv=0;
355      for(HepMC::GenEvent::vertex_const_iterator vitr= evt->vertices_begin();
# Line 311 | Line 360 | std::vector<PVStudy::simPrimaryVertex> P
360        // t component of PV:
361        for ( HepMC::GenVertex::particle_iterator mother  = (*vitr)->particles_begin(HepMC::parents);
362              mother != (*vitr)->particles_end(HepMC::parents); ++mother ) {
363 <        //        std::cout << "Status = " << (*mother)->status() << std::endl;
363 >        //        edm::LogInfo("SimPVs") << "Status = " << (*mother)->status() << endl;
364          HepMC::GenVertex * mv=(*mother)->production_vertex();
365          if( ((*mother)->status() == 3) && (!mv)) {
366 <          //        std::cout << "npv= " << npv << std::endl;
366 >          //        edm::LogInfo("SimPVs") << "npv= " << npv << endl;
367            if (npv == 0) {
368 <            h["genPart_cT"]->Fill(pos.t()); // mm
369 <            h["genPart_T"]->Fill(pos.t()/299.792458); // ns
368 >            h_gen->Fill1d("genPart_cT", pos.t()); // mm
369 >            h_gen->Fill1d("genPart_T", pos.t()/299.792458); // ns
370            }
371            npv++;
372          }
# Line 325 | Line 374 | std::vector<PVStudy::simPrimaryVertex> P
374        //       if (pos.t()>0) { continue;} // for 22X when t of PV was not smeared
375          
376        bool hasMotherVertex=false;
377 <      if(verbose_) cout << "mothers of vertex[" << ++idx << "]: " << endl;
377 >      if (verbose_) cout << "[getSimPVs] mothers of vertex[" << ++idx << "]: " << endl;
378        for ( HepMC::GenVertex::particle_iterator mother  = (*vitr)->particles_begin(HepMC::parents);
379              mother != (*vitr)->particles_end(HepMC::parents); ++mother ) {
380          HepMC::GenVertex * mv=(*mother)->production_vertex();
381 <        //        std::cout << "Status = " << (*mother)->status() << std::endl;
381 >        // if (verbose_) cout << "Status = " << (*mother)->status() << endl;
382          if (mv) {
383            hasMotherVertex=true;
384            if(!verbose_) break; //if verbose_, print all particles of gen vertices
# Line 356 | Line 405 | std::vector<PVStudy::simPrimaryVertex> P
405  
406        if(!vp){
407          // this is a new vertex
408 <        if(verbose_) cout << "this is a new vertex " << sv.x << " " << sv.y << " " << sv.z << endl;
408 >        edm::LogInfo("SimPVs") << "[getSimPVs] this is a new vertex " << sv.x << " " << sv.y << " " << sv.z << endl;
409          simpv.push_back(sv);
410          vp=&simpv.back();
411        }else{
412 <        if(verbose_) cout << "this is not a new vertex " << sv.x << " " << sv.y << " " << sv.z << endl;
412 >        edm::LogInfo("SimPVs") << "[getSimPVs] this is not a new vertex " << sv.x << " " << sv.y << " " << sv.z << endl;
413        }
414        vp->genVertex.push_back((*vitr)->barcode());
415        // collect final state descendants
# Line 384 | Line 433 | std::vector<PVStudy::simPrimaryVertex> P
433              }
434            }
435          }
436 <      }
437 <    }
436 >      }//loop MC vertices daughters
437 >    }//loop MC vertices
438    }
439    return simpv;
440   }
# Line 418 | Line 467 | std::vector<PVStudy::simPrimaryVertex> P
467                ptsq+=(*daughter)->momentum().perp()*(*daughter)->momentum().perp();
468              }
469            }
470 <          primary =  ( gv->position().t()==0);
470 >          //primary =  ( gv->position().t()==0 );
471 >          primary = true;
472 >          h_gen->Fill1d("genPart_cT", gv->position().t()); // mm
473 >          h_gen->Fill1d("genPart_T", gv->position().t()/299.792458); // ns
474 >
475            //resonance= ( gp->mother() && isResonance(gp->mother()));  // in CLHEP/HepMC days
476            // no more mother pointer in the improved HepMC GenParticle
477            resonance= ( isResonance(*(gp->production_vertex()->particles_in_const_begin())));
# Line 467 | Line 520 | PVStudy::analyze(const edm::Event& iEven
520    using namespace edm;
521    using namespace reco;
522    
523 <  if (verbose_)
471 <    cout<<"PVStudy::analyze():"<<endl;
523 >  edm::LogInfo("Debug")<<"[PVStudy]"<<endl;
524    //=======================================================
525    // Initialize Root-tuple variables if needed
526    //=======================================================
527    //if(saventuple_)
528 <    SetVarToZero();
528 >  SetVarToZero();
529    
530    //=======================================================
531    // Track accessors
# Line 486 | Line 538 | PVStudy::analyze(const edm::Event& iEven
538    if( iEvent.getByLabel(trackCollectionTag_, trackCollectionHandle)) {
539      trackColl = trackCollectionHandle.product();
540    } else {
541 <    cout << "trackCollection cannot be found -> using empty collection of same type." <<endl;
541 >    edm::LogInfo("Debug") << "[PVStudy] trackCollection cannot be found -> using empty collection of same type." <<endl;
542    }
543 +
544    //splitTrackCollection1
545    static const reco::TrackCollection s_empty_splitTrackColl1;
546    const reco::TrackCollection *splitTrackColl1 = &s_empty_splitTrackColl1;
# Line 496 | Line 549 | PVStudy::analyze(const edm::Event& iEven
549    if( iEvent.getByLabel(splitTrackCollection1Tag_, splitTrackCollection1Handle)) {
550      splitTrackColl1 = splitTrackCollection1Handle.product();
551    } else {
552 <    cout << "splitTrackCollection1 cannot be found -> using empty collection of same type." <<endl;
552 >    edm::LogInfo("Debug") << "[PVStudy] splitTrackCollection1 cannot be found -> using empty collection of same type." <<endl;
553    }
554 +
555    //splitTrackCollection2
556    static const reco::TrackCollection s_empty_splitTrackColl2;
557    const reco::TrackCollection *splitTrackColl2 = &s_empty_splitTrackColl2;
# Line 506 | Line 560 | PVStudy::analyze(const edm::Event& iEven
560    if( iEvent.getByLabel(splitTrackCollection2Tag_, splitTrackCollection2Handle)) {
561      splitTrackColl2 = splitTrackCollection2Handle.product();
562    } else {
563 <    cout << "splitTrackCollection2 cannot be found -> using empty collection of same type." <<endl;
563 >    edm::LogInfo("Debug") << "[PVStudy] splitTrackCollection2 cannot be found -> using empty collection of same type." <<endl;
564    }
565 <  
565 >
566 >
567 >  //=======================================================
568 >  // Fill trackparameters of the input tracks to pvtx fitter
569 >  //=======================================================
570 >  edm::LogInfo("Debug")<<"[PVStudy] Start filling track parameters of the input tracks to pvtx fitter."<<endl;
571 >  //fillTrackHisto(const reco::TrackCollection *trackColl, int datatype)
572 >  // datatype: unsplittracks (0); splittracks1 (1);  splittracks2 (2);
573 >  fillTrackHisto(trackColl, 0);
574 >  fillTrackHisto(splitTrackColl1, 1);
575 >  fillTrackHisto(splitTrackColl2, 2);
576 >  edm::LogInfo("Debug")<<"[PVStudy] End filling track parameters of the input tracks to pvtx fitter."<<endl;
577 >
578    //=======================================================
579    // PVTX accessors
580    //=======================================================
# Line 520 | Line 586 | PVStudy::analyze(const edm::Event& iEven
586    if( iEvent.getByLabel(vertexCollectionTag_, vertexCollectionHandle)) {
587      vertexColl = vertexCollectionHandle.product();
588    } else {
589 <    cout << "vertexCollection cannot be found -> using empty collection of same type." <<endl;
589 >    edm::LogInfo("Debug") << "[PVStudy] vertexCollection cannot be found -> using empty collection of same type." <<endl;
590    }
591 +
592    //splitVertexCollection1
593    static const reco::VertexCollection s_empty_splitVertexColl1;
594    const reco::VertexCollection *splitVertexColl1 = &s_empty_splitVertexColl1;
# Line 530 | Line 597 | PVStudy::analyze(const edm::Event& iEven
597    if( iEvent.getByLabel(splitVertexCollection1Tag_, splitVertexCollection1Handle)) {
598      splitVertexColl1 = splitVertexCollection1Handle.product();
599    } else {
600 <    cout << "splitVertexCollection1 cannot be found -> using empty collection of same type." <<endl;
601 <  }
600 >    edm::LogInfo("Debug") << "[PVStudy] splitVertexCollection1 cannot be found -> using empty collection of same type." <<endl;
601 >  }
602 >
603    //splitVertexCollection2
604    static const reco::VertexCollection s_empty_splitVertexColl2;
605    const reco::VertexCollection *splitVertexColl2 = &s_empty_splitVertexColl2;
# Line 540 | Line 608 | PVStudy::analyze(const edm::Event& iEven
608    if( iEvent.getByLabel(splitVertexCollection2Tag_, splitVertexCollection2Handle)) {
609      splitVertexColl2 = splitVertexCollection2Handle.product();
610    } else {
611 <    cout << "splitVertexCollection2 cannot be found -> using empty collection of same type." <<endl;
611 >    edm::LogInfo("Debug") << "[PVStudy] splitVertexCollection2 cannot be found -> using empty collection of same type." <<endl;
612    }
613 <
614 <  if(verbose_) cout<<"Done accessing the track and vertex collections"<<endl;
613 >  
614 >  edm::LogInfo("Debug")<<"[PVStudy] End accessing the track and vertex collections"<<endl;
615    
616    //=======================================================
617    // MC simvtx accessor
# Line 562 | Line 630 | PVStudy::analyze(const edm::Event& iEven
630    try{
631      iSetup.getData(pdt);
632    }catch(const Exception&){
633 <    cout << "Some problem occurred with the particle data table. This may not work !." <<endl;
633 >    edm::LogInfo("Debug") << "[PVStudy] Some problem occurred with the particle data table. This may not work !." <<endl;
634    }
635 <
635 >  
636    //=======================================================
637 <  // Fill trackparameters of the input tracks to pvtx fitter
637 >  // GET pixelVertices
638    //=======================================================
639 <
640 <  // GeneralTracks  
641 <  h["nTrk"]->Fill(trackColl->size());
642 <  for(TrackCollection::const_iterator itTrack = trackColl->begin();
643 <      itTrack != trackColl->end();                      
644 <      ++itTrack) {
645 <    h["trkPt"]->Fill(itTrack->pt());
646 <    h["trkDxy"]->Fill(itTrack->dxy());
579 <    h["trkDz"]->Fill(itTrack->dz());
580 <    h["trkEta"]->Fill(itTrack->eta());
581 <    h["trkPhi"]->Fill(itTrack->phi());
639 >  static const reco::VertexCollection s_empty_pixelVertexColl;
640 >  const reco::VertexCollection *pixelVertexColl = &s_empty_pixelVertexColl;
641 >  edm::Handle<reco::VertexCollection>  pixelVertexCollectionHandle;
642 >  iEvent.getByLabel(pixelVertexCollectionTag_, pixelVertexCollectionHandle);
643 >  if( iEvent.getByLabel(pixelVertexCollectionTag_, pixelVertexCollectionHandle)) {
644 >    pixelVertexColl = pixelVertexCollectionHandle.product();
645 >  } else {
646 >    edm::LogInfo("Debug") << "[PVStudy] pixelVertexCollection cannot be found. -> using empty collection of same type." <<endl;
647    }
648 <  
649 <  //SplittedTracks1
650 <  h["nTrk1_spl"]->Fill(splitTrackColl1->size());
651 <  for(TrackCollection::const_iterator itTrack = splitTrackColl1->begin();
652 <      itTrack != splitTrackColl1->end();                      
653 <      ++itTrack) {
654 <    h["trkPt1_spl"]->Fill(itTrack->pt());
655 <    h["trkDxy1_spl"]->Fill(itTrack->dxy());
656 <    h["trkDz1_spl"]->Fill(itTrack->dz());
657 <    h["trkEta1_spl"]->Fill(itTrack->eta());
658 <    h["trkPhi1_spl"]->Fill(itTrack->phi());
659 <  }
660 <  //SplittedTracks2  
661 <  h["nTrk2_spl"]->Fill(splitTrackColl2->size());
662 <  for(TrackCollection::const_iterator itTrack = splitTrackColl2->begin();
663 <      itTrack != splitTrackColl2->end();                      
664 <      ++itTrack) {
665 <    h["trkPt2_spl"]->Fill(itTrack->pt());
666 <    h["trkDxy2_spl"]->Fill(itTrack->dxy());
667 <    h["trkDz2_spl"]->Fill(itTrack->dz());
668 <    h["trkEta2_spl"]->Fill(itTrack->eta());
669 <    h["trkPhi2_spl"]->Fill(itTrack->phi());
648 >
649 >  //=======================================================
650 >  // Fill pixelVertices related histograms
651 >  //=======================================================
652 >  nrecPV_pxlpvtx_ = int (pixelVertexColl->size());
653 >  if(pixelVertexColl->size()>0 && pixelVertexColl->begin()->isValid() && !(pixelVertexColl->begin()->isFake())) {
654 >    //fillTrackHistoInPV(const reco::VertexCollection *vertexColl, int datatype, bool fillHisto, bool fillNtuple) {
655 >    fillTrackHistoInPV(pixelVertexColl, 4, false, true);
656 >    h_pixvtx->Fill1d("dzErr_pxlpvtx", pixelVertexColl->begin()->zError());    
657 >    // Get the dZ error of the tracks in the leading pixelVertexColl
658 >    for(reco::Vertex::trackRef_iterator t = (pixelVertexColl->begin())->tracks_begin();
659 >        t!= (pixelVertexColl->begin())->tracks_end(); t++) {
660 >      
661 >      if ( (**t).charge() < -1 || (**t).charge() > 1 ) {
662 >        //        h_pvtrk->Fill1d("trkPtPV", 0.);
663 >      }
664 >      else
665 >        h_pixvtx->Fill1d("trkdzErr_pxlpvtx", (**t).dzError());
666 >    }
667 >    // Fill the track->dz() in the PV difference from first pixelpvtx
668 >    for(reco::Vertex::trackRef_iterator t = (vertexColl->begin())->tracks_begin();
669 >        t!= (vertexColl->begin())->tracks_end(); t++) {
670 >      // illegal charge
671 >      if ( (**t).charge() < -1 || (**t).charge() > 1 ) {
672 >        //        h_pvtrk->Fill1d("trkPtPV", 0.);
673 >      }
674 >      else {
675 >        if(pixelVertexColl->size()>0) {
676 >          h_pixvtx->Fill1d("trkdz_pxlpvtxdz", (**t).dz() -  pixelVertexColl->begin()->z());
677 >          h_pixvtx->Fill1d("trkdz_pxlpvtxdz_pxlpvtxdzerr", fabs((**t).dz() -  pixelVertexColl->begin()->z())/pixelVertexColl->begin()->zError());
678 >          h_pixvtx->Fill1d("trkdz_pxlpvtxdz_trkdzerr", fabs((**t).dz() -  pixelVertexColl->begin()->z())/(**t).dzError());
679 >          h_pixvtx->Fill1d("trkdzErr_pvtx", (**t).dzError());
680 >        }
681 >      }
682 >    }
683    }
606  
607  if(verbose_)
608    cout<<"Done filling track parameters of the input tracks to pvtx fitter."<<endl;
684  
685    //=======================================================
686 <  // Fill reconstructed vertices
686 >  // Fill number of reconstructed vertices
687    //=======================================================
688 <  if(verbose_)  {
689 <    cout<<"PVStudy::analyze() Printing vertexCollection: "<<endl;
688 >
689 >  edm::LogInfo("Debug")<<"[PVStudy] Printing vertexCollection: "<<endl;
690 >  edm::LogInfo("Debug")<<"[PVStudy] Printing splitVertexCollection1: "<<endl;
691 >  edm::LogInfo("Debug")<<"[PVStudy] Printing splitVertexCollection2: "<<endl;
692 >  edm::LogInfo("Debug")<<"[PVStudy] Start filling pvtx parameters."<<endl;
693 >  if (verbose_) {
694      printRecVtxs(vertexCollectionHandle);
616    cout<<"PVStudy::analyze() Printing splitVertexCollection1: "<<endl;
695      printRecVtxs(splitVertexCollection1Handle);
618    cout<<"PVStudy::analyze() Printing splitVertexCollection2: "<<endl;
696      printRecVtxs(splitVertexCollection2Handle);
697    }
698 +  nrecPV_ = int (vertexColl->size());
699 +  nrecPV1_spl_ = int (splitVertexColl1->size());
700 +  nrecPV2_spl_ = int (splitVertexColl2->size());
701 +
702 +  h_pvtrk->Fill1d("nrecPV", nrecPV_);
703 +  h_pvtrk->Fill1d("nrecPV1_spl", nrecPV1_spl_);
704 +  h_pvtrk->Fill1d("nrecPV2_spl", nrecPV2_spl_);
705 +  h_misc->Fill1d("nrecPVDiff", double(nrecPV1_spl_)-double(nrecPV2_spl_));
706    
707 <  //Fill the tree variables
708 <  nrecPV_ = vertexColl->size();
709 <  nrecPV1_spl_ = splitVertexColl1->size();
710 <  nrecPV2_spl_ = splitVertexColl2->size();
711 <
712 <  h["nrecPV"]->Fill(nrecPV_);
713 <  h["nrecPV1_spl"]->Fill(nrecPV1_spl_);
629 <  h["nrecPV2_spl"]->Fill(nrecPV2_spl_);
630 <  h["nrecPVDiff"]->Fill(double(nrecPV1_spl_)-double(nrecPV2_spl_));
707 >  //=================================================================
708 >  // Fill track parameter ntuple/hist for tracks used in recoVertices
709 >  //=================================================================
710 >
711 >  //fillTrackHistoInPV(const reco::VertexCollection *vertexColl, int datatype, bool fillHisto, bool fillNtuple) {
712 >  if(vertexColl->size() > 0 && vertexColl->begin()->isValid() && !(vertexColl->begin()->isFake()))
713 >    fillTrackHistoInPV(vertexColl, 0, true, true);
714    
715 <  // Fill the track paramters for the vertexColl
716 <  for(reco::VertexCollection::const_iterator v=vertexColl->begin();
717 <      v!=vertexColl->end(); ++v){
718 <    h["nTrkPV"]->Fill(v->tracksSize());
719 <    try {
720 <      for(reco::Vertex::trackRef_iterator t = v->tracks_begin();
721 <          t!=v->tracks_end(); t++) {
722 <        // illegal charge
723 <        if ( (**t).charge() < -1 || (**t).charge() > 1 ) {
724 <          //      h["trkPtPV"]->Fill(0.);
725 <        }
726 <        else {
727 <          h["trkPtPV"]->Fill((**t).pt());
728 <          h["trkDxyPV"]->Fill((**t).dxy());
729 <          h["trkDzPV"]->Fill((**t).dz());
730 <          h["trkEtaPV"]->Fill((**t).eta());
731 <          h["trkPhiPV"]->Fill((**t).phi());
732 <        }
733 <      }
651 <    }
652 <    catch (...) {
653 <      // exception thrown when trying to use linked track
654 <      //          h["trkPtPV"]->Fill(0.);
655 <    }
715 >  if(splitVertexColl1->size() > 0 && splitVertexColl1->begin()->isValid() && !(splitVertexColl1->begin()->isFake()))
716 >    fillTrackHistoInPV(splitVertexColl1, 1, false, true);
717 >
718 >  if(splitVertexColl1->size() > 0 && splitVertexColl2->begin()->isValid() && !(splitVertexColl2->begin()->isFake()))
719 >    fillTrackHistoInPV(splitVertexColl2, 2, false, true);
720 >
721 >
722 >  //=======================================================
723 >  // Compare offlinePrimaryVertices with pixelVertices
724 >  //=======================================================
725 >  if( (pixelVertexColl->size()>0 && pixelVertexColl->begin()->isValid() && !(pixelVertexColl->begin()->isFake()))
726 >      && (vertexColl->size()>0 && vertexColl->begin()->isValid() && !(vertexColl->begin()->isFake())) ) {    
727 >    h_pixvtx->Fill1d("nrecPV_minus_nrecPxlPV", double (nrecPV_ - nrecPV_pxlpvtx_));
728 >    // difference in reconstructed position of the leading pvtx
729 >    //edm::LogInfo("Debug")<<"recx_[0] = "<< recx_[0] << "recx_pxlpvtx_[0] = "<< recx_pxlpvtx_[0]<<endl;  
730 >    //edm::LogInfo("Debug")<<"recy_[0] = "<< recy_[0] << "recy_pxlpvtx_[0] = "<< recy_pxlpvtx_[0]<<endl;
731 >    h_pixvtx->Fill1d("recxPV_minus_recxPxlPV", recx_[0] - recx_pxlpvtx_[0]);
732 >    h_pixvtx->Fill1d("recyPV_minus_recyPxlPV", recy_[0] - recy_pxlpvtx_[0]);
733 >    h_pixvtx->Fill1d("reczPV_minus_reczPxlPV", recz_[0] - recz_pxlpvtx_[0]);
734    }
735    
736 +
737 +
738 +  //==========================================================
739 +  // Fill secondary/primary min separations for multi-vertices
740 +  //==========================================================
741    
742 <  // == ignore multi-vertices (for now)
743 <  //take single pvt collection and compare
744 <  if(splitVertexColl1->size() == 1 && splitVertexColl2->size() == 1 ) {
745 <    const reco::Vertex recvtx1 = *(splitVertexColl1->begin());
746 <    const reco::Vertex recvtx2 = *(splitVertexColl2->begin());
747 <    if (matchVertex(recvtx1, recvtx2))  {
748 <      int nTrkPV1 = recvtx1.tracksSize();
749 <      int nTrkPV2 = recvtx2.tracksSize();    
750 <      h["nTrkPV1_spl"]->Fill(nTrkPV1);
751 <      h["nTrkPV2_spl"]->Fill(nTrkPV2);
752 <      double ntrkreldiff = double(nTrkPV1-nTrkPV2)/double(nTrkPV1+nTrkPV2);
753 <      h["nTrkPVDiff"]->Fill(nTrkPV1-nTrkPV2);
754 <      h["nTrkPVRelDiff"]->Fill(ntrkreldiff);
755 <      
756 <      // Fill the track paramters for the splitVertexColl1
757 <      try {
758 <        for(reco::Vertex::trackRef_iterator t = recvtx1.tracks_begin();
759 <            t!=recvtx1.tracks_end(); t++) {
760 <          // illegal charge
761 <          if ( (**t).charge() < -1 || (**t).charge() > 1 ) {
762 <            //    h["trkPtPV"]->Fill(0.);
763 <          }
764 <          else {
765 <            h["trkPtPV1_spl"]->Fill((**t).pt());
766 <            h["trkDxyPV1_spl"]->Fill((**t).dxy());
767 <            h["trkDzPV1_spl"]->Fill((**t).dz());
768 <            h["trkEtaPV1_spl"]->Fill((**t).eta());
769 <            h["trkPhiPV1_spl"]->Fill((**t).phi());
770 <          }
771 <        }
772 <      }
773 <      catch (...) {
774 <        // exception thrown when trying to use linked track
775 <        //        h["trkPtPV"]->Fill(0.);
742 >  if(vertexColl->size()>1 && vertexColl->begin()->isValid() && !(vertexColl->begin()->isFake()) ) {  
743 >
744 >    double min_xsep = 9999.0;
745 >    double min_ysep = 9999.0;
746 >    double min_zsep = 9999.0;    
747 >    double min_xsep_sign = 9999.0;
748 >    double min_ysep_sign = 9999.0;
749 >    double min_zsep_sign = 9999.0;
750 >    double min_ntrksep = 9999.0;
751 >    double min_sumpt2sep = 9999999.0;
752 >    
753 >    edm::LogInfo("Debug")<<"[PVStudy] leading pvtx z = "<< vertexColl->begin()->z() <<endl;
754 >
755 >    // Looping through the secondary vertices to find the mininum separation to the primary
756 >    for(reco::VertexCollection::const_iterator v=vertexColl->begin() + 1 ;
757 >        v!=vertexColl->end(); ++v) {  
758 >      if(v->isValid() && ! v->isFake()) {
759 >        // xsep
760 >        if(fabs(v->x()- vertexColl->begin()->x())<min_xsep)
761 >          min_xsep = fabs(v->x()- vertexColl->begin()->x());
762 >        // ysep
763 >        if(fabs(v->y()- vertexColl->begin()->y())<min_ysep)
764 >          min_ysep = fabs(v->y()- vertexColl->begin()->y());
765 >        // zsep
766 >        if(fabs(v->z()- vertexColl->begin()->z())<min_zsep)
767 >          min_zsep = fabs(v->z()- vertexColl->begin()->z());
768 >        // xsep_sign
769 >        double xsep_sign = fabs(v->x()- vertexColl->begin()->x())/max(v->xError(), vertexColl->begin()->xError());
770 >        if(xsep_sign < min_xsep_sign)
771 >          min_xsep_sign = xsep_sign;
772 >        // ysep_sign
773 >        double ysep_sign = fabs(v->y()- vertexColl->begin()->y())/max(v->yError(), vertexColl->begin()->yError());
774 >        if(ysep_sign < min_ysep_sign)
775 >          min_ysep_sign = ysep_sign;
776 >        // zsep_sign
777 >        double zsep_sign = fabs(v->z()- vertexColl->begin()->z())/max(v->zError(), vertexColl->begin()->zError());
778 >        if(zsep_sign < min_zsep_sign)
779 >          min_zsep_sign = zsep_sign;
780 >        // ntrksep
781 >        if( (double(vertexColl->begin()->tracksSize()) - double(v->tracksSize())) < min_ntrksep)
782 >          min_ntrksep = double(vertexColl->begin()->tracksSize()) - double(v->tracksSize());
783 >        // sumpt2sep
784 >        if(fabs(sumPtSquared(*v) - sumPtSquared(*(vertexColl->begin()))) < min_sumpt2sep)
785 >          min_sumpt2sep = fabs(sumPtSquared(*v) - sumPtSquared(*(vertexColl->begin())));
786        }
787 <      
788 <      // Fill the track paramters for the splitVertexColl2
789 <      try {
790 <        for(reco::Vertex::trackRef_iterator t = recvtx2.tracks_begin();
791 <            t!=recvtx2.tracks_end(); t++) {
792 <          // illegal charge
793 <          if ( (**t).charge() < -1 || (**t).charge() > 1 ) {
794 <            //    h["trkPtPV"]->Fill(0.);
795 <          }
796 <          else {
797 <            h["trkPtPV2_spl"]->Fill((**t).pt());
798 <            h["trkDxyPV2_spl"]->Fill((**t).dxy());
799 <            h["trkDzPV2_spl"]->Fill((**t).dz());
800 <            h["trkEtaPV2_spl"]->Fill((**t).eta());
801 <            h["trkPhiPV2_spl"]->Fill((**t).phi());
802 <          }
787 >    }
788 >    h_misc->Fill1d("min_xsep", min_xsep);
789 >    h_misc->Fill1d("min_ysep", min_ysep);
790 >    h_misc->Fill1d("min_zsep", min_zsep);
791 >    h_misc->Fill1d("min_xsep_sign", min_xsep_sign);
792 >    h_misc->Fill1d("min_ysep_sign", min_ysep_sign);
793 >    h_misc->Fill1d("min_zsep_sign", min_zsep_sign);
794 >    h_misc->Fill1d("min_ntrksep", min_ntrksep);
795 >    h_misc->Fill1d("min_sumpt2sep", min_sumpt2sep);
796 >
797 >    min_zsep_ = min_zsep;
798 >    min_ntrksep_ = min_ntrksep;
799 >    min_sumpt2sep_ = min_sumpt2sep;
800 >
801 >
802 >  } // End of  if(vertexColl->size()>1) {
803 >  
804 >  edm::LogInfo("Debug")<<"[PVStudy] End filling pvtx parameters."<<endl;
805 >  
806 >  //=======================================================
807 >  //           PrimaryVertex Matching
808 >  // 1. In z  |z1-z2|< zsigncut * max(sigmaz1, sigmaz2)
809 >  // 2. |(nTrkPV1 - nTrkPV2)/(nTrkPV1+nTrkPV2)|<ntrkdiffcut_
810 >  // Assume the first match is the primary vertex,
811 >  // since vertexColl are sorted in decreasing order of sum(pT)
812 >  //=======================================================
813 >
814 >  edm::LogInfo("Debug")<<"[PVStudy] matching pvtxs "<<endl;
815 >  reco::VertexCollection s_empty_matchedVertexColl1;
816 >  reco::VertexCollection *matchedVertexColl1 = &s_empty_matchedVertexColl1;
817 >  matchedVertexColl1->reserve(splitVertexColl1->size());
818 >  reco::VertexCollection s_empty_matchedVertexColl2;
819 >  reco::VertexCollection *matchedVertexColl2 = &s_empty_matchedVertexColl2;
820 >  matchedVertexColl2->reserve(splitVertexColl2->size());
821 >  
822 >  bool stopmatching = false;
823 >  for (size_t ivtx = 0; ivtx<splitVertexCollection1Handle->size() && !stopmatching; ++ivtx) {
824 >    reco::VertexRef recvtx1(splitVertexCollection1Handle, ivtx);
825 >    if( !(recvtx1->isValid()) || recvtx1->isFake()) break;
826 >    for (size_t jvtx = ivtx; jvtx < splitVertexCollection2Handle->size(); ++jvtx) {    
827 >      //------------------------------------------------------------------------
828 >      //== If only considering matching the first vertex of the splitVertexColl
829 >      //------------------------------------------------------------------------
830 >      if (ivtx!=0 || jvtx!=0) { stopmatching = true; break; }
831 >      reco::VertexRef recvtx2(splitVertexCollection2Handle, jvtx);
832 >      if( !(recvtx2->isValid()) || recvtx2->isFake()) break;
833 >      edm::LogInfo("Debug")<<"[PVStudy] Matching splitVertexColl1: #  "<< ivtx<< " and splitVertexColl1: # "<<jvtx<<endl;
834 >      edm::LogInfo("Debug")<<"[PVStudy] recvtx1->z() = " << recvtx1->z() << "+/- "<< recvtx1->zError() << "." << endl;
835 >      edm::LogInfo("Debug")<<"[PVStudy] recvtx2->z() = " << recvtx2->z() << "+/- "<< recvtx2->zError() << "." << endl;
836 >
837 >      if(matchVertex(recvtx1, recvtx2, zsigncut_)) {
838 >        edm::LogInfo("Debug")<<"[PVStudy] The two splitted vertices match in Z. "<<endl;
839 >
840 >        int nTrkPV1 = recvtx1->tracksSize();
841 >        int nTrkPV2 = recvtx2->tracksSize();    
842 >        double ntrkreldiff = double(nTrkPV1-nTrkPV2)/double(nTrkPV1+nTrkPV2);
843 >        h_misc->Fill1d("nTrkPVDiff", nTrkPV1-nTrkPV2);
844 >        h_misc->Fill1d("nTrkPVRelDiff", ntrkreldiff);
845 >        if(fabs(ntrkreldiff)<ntrkdiffcut_) {    
846 >          edm::LogInfo("Debug")<<"[PVStudy] (nTrkPV1-nTrkPV2)/(nTrkPV1+nTrkPV2) = " << ntrkreldiff<<endl;
847 >
848 >          matchedVertexColl1->push_back(*recvtx1);
849 >          matchedVertexColl2->push_back(*recvtx2);
850 >          stopmatching = true; // stop the matching when the first match is found!
851 >          break;
852          }
853 +        else
854 +          edm::LogInfo("Debug")<<"WARNING: (nTrkPV1-nTrkPV2)/(nTrkPV1+nTrkPV2) = " << ntrkreldiff<<", exceeding cut "<<ntrkdiffcut_<<endl;
855        }
856 <      catch (...) {
857 <        // exception thrown when trying to use linked track
858 <        //        h["trkPtPV"]->Fill(0.);
856 >      else {
857 >        edm::LogInfo("Debug")<<"WARNING: The two reconstructed vertices do not match in z: "<<endl;
858 >        edm::LogInfo("Debug")<<"recvtx1->z() = " << recvtx1->z() << "+/- "<< recvtx1->zError() << "." << endl;
859 >        edm::LogInfo("Debug")<<"recvtx2->z() = " << recvtx2->z() << "+/- "<< recvtx2->zError() << "." << endl;  
860        }
716      
717      if(verbose_)
718        cout<<"Done filling track parameters in reconstruced vertices."<<endl;
719
720      if(fabs(ntrkreldiff)<ntrkdiffcut_) {
721        fres_[0] = (recvtx1.x()-recvtx2.x())/sqrt(2.0);
722        fres_[1] = (recvtx1.y()-recvtx2.y())/sqrt(2.0);
723        fres_[2] = (recvtx1.z()-recvtx2.z())/sqrt(2.0);      
724        ferror_[0] = sqrt(pow(recvtx1.xError(),2)+pow(recvtx2.xError(),2))/sqrt(2);
725        ferror_[1] = sqrt(pow(recvtx1.yError(),2)+pow(recvtx2.yError(),2))/sqrt(2);
726        ferror_[2] = sqrt(pow(recvtx1.zError(),2)+pow(recvtx2.zError(),2))/sqrt(2);
727        fntrk_ =  (nTrkPV1+nTrkPV2)/2;
728        
729        h["deltax"]->Fill( fres_[0] );
730        h["deltay"]->Fill( fres_[1] );
731        h["deltaz"]->Fill( fres_[2] );
732        h["pullx"]->Fill( fres_[0]/ferror_[0]);
733        h["pully"]->Fill( fres_[1]/ferror_[1]);
734        h["pullz"]->Fill( fres_[2]/ferror_[2]);
735        h["errPVx"]->Fill( ferror_[0] );
736        h["errPVy"]->Fill( ferror_[1] );
737        h["errPVz"]->Fill( ferror_[2] );
738        pvinfo.push_back(PVStudy::PVInfo(res(fres_[0], fres_[1], fres_[2]),
739                                         error(ferror_[0], ferror_[1], ferror_[2]),
740                                         fntrk_));
741        // Fill histo according to its track multiplicity, set datamode = 0
742        fillHisto(res(fres_[0], fres_[1], fres_[2]),
743                  error(ferror_[0], ferror_[1], ferror_[2]),
744                  fntrk_,0);  
745
746        if (saventuple_) ftree_->Fill();        
747      } // End of  if(fabs(ntrkreldiff)<ntrkdiffcut_) {
748    } // End of  if (matchVertex(recvtx1, recvtx2))  {
749    else   {
750      cout<<"WARNING: The two reconstructed vertices do not match in z: "<<endl;
751      cout<<"recvtx1.z() = " << recvtx1.z() <<"; recvtx2.z() = " <<  recvtx2.z() <<endl;
861      }
862 <  } // End of fill histograms for two-vertices Method
863 <
864 <  if(verbose_)
865 <    cout<<"Done filling res/pull with two-vertices method"<<endl;
862 >  }
863 >  edm::LogInfo("Debug")<<"[PVStudy] End matching pvtxs"<<endl;
864 >  
865 >  //=======================================================
866 >  //  Analyze matchedVertexColls
867 >  //=======================================================
868 >  edm::LogInfo("Debug")<<"[PVStudy] Begin analyzing the matchedVertexColl with size = "<< matchedVertexColl1->size()<< endl;
869 >  
870 >  // Compare the reconstructed vertex position and calculate resolution/pulls
871 >  if(matchedVertexColl1->size() != 0 && matchedVertexColl2->size() != 0) {  
872 >    //fillPvtxHisto(const reco::VertexCollection *vertexColl, int datatype, bool fillHisto, bool fillNtuple)
873 >    fillTrackHistoInPV(matchedVertexColl1, 1, true, false);
874 >    fillTrackHistoInPV(matchedVertexColl2, 2, true, false);
875 >
876 >    reco::VertexCollection::const_iterator v1;
877 >    reco::VertexCollection::const_iterator v2;
878 >    nrecPV_twovtx_ = 0;
879 >    for(v1 = matchedVertexColl1->begin(), v2 = matchedVertexColl2->begin();
880 >        v1!=matchedVertexColl1->end(), v2 != matchedVertexColl2->end();
881 >        ++v1, ++v2) {
882 >      fres_[0] = (v1->x()-v2->x())/sqrt(2.0);
883 >      fres_[1] = (v1->y()-v2->y())/sqrt(2.0);
884 >      fres_[2] = (v1->z()-v2->z())/sqrt(2.0);
885 >      ferror_[0] = sqrt(pow(v1->xError(),2)+pow(v2->xError(),2))/sqrt(2);
886 >      ferror_[1] = sqrt(pow(v1->yError(),2)+pow(v2->yError(),2))/sqrt(2);
887 >      ferror_[2] = sqrt(pow(v1->zError(),2)+pow(v2->zError(),2))/sqrt(2);
888 >      fntrk_ =  (v1->tracksSize()+v2->tracksSize())/2;
889 >      
890 >      h_summary->Fill1d("deltax", fres_[0] );
891 >      h_summary->Fill1d("deltay", fres_[1] );
892 >      h_summary->Fill1d("deltaz", fres_[2] );
893 >      h_summary->Fill1d("pullx", fres_[0]/ferror_[0]);
894 >      h_summary->Fill1d("pully", fres_[1]/ferror_[1]);
895 >      h_summary->Fill1d("pullz", fres_[2]/ferror_[2]);
896 >      h_summary->Fill1d("errPVx", ferror_[0] );
897 >      h_summary->Fill1d("errPVy", ferror_[1] );
898 >      h_summary->Fill1d("errPVz", ferror_[2] );
899 >      pvinfo.push_back(PVStudy::PVInfo(res(fres_[0], fres_[1], fres_[2]),
900 >                                       error(ferror_[0], ferror_[1], ferror_[2]),
901 >                                       fntrk_));
902 >      // Fill histo according to its track multiplicity, set datamode = 0 for pvtx using all tracks
903 >      fillHisto(res(fres_[0], fres_[1], fres_[2]),
904 >                error(ferror_[0], ferror_[1], ferror_[2]),
905 >                fntrk_,0);  
906 >      // Fill the ntuple variables
907 >      nTrkPV1_spl_twovtx_[nrecPV_twovtx_] = v1->tracksSize();
908 >      nTrkPV2_spl_twovtx_[nrecPV_twovtx_] = v2->tracksSize();
909 >      sumptsq1_spl_twovtx_[nrecPV_twovtx_] = sumPtSquared(*v1);
910 >      sumptsq2_spl_twovtx_[nrecPV_twovtx_] = sumPtSquared(*v2);
911 >      nTrkPV_twovtx_[nrecPV_twovtx_] = fntrk_;
912 >      deltax_twovtx_[nrecPV_twovtx_] = fres_[0];
913 >      deltay_twovtx_[nrecPV_twovtx_] = fres_[1];
914 >      deltaz_twovtx_[nrecPV_twovtx_] = fres_[2];
915 >      errx_twovtx_[nrecPV_twovtx_] = ferror_[0];
916 >      erry_twovtx_[nrecPV_twovtx_] = ferror_[1];
917 >      errz_twovtx_[nrecPV_twovtx_] = ferror_[2];
918 >      pullx_twovtx_[nrecPV_twovtx_] = fres_[0]/ferror_[0];
919 >      pully_twovtx_[nrecPV_twovtx_] = fres_[1]/ferror_[1];
920 >      pullz_twovtx_[nrecPV_twovtx_] = fres_[2]/ferror_[2];    
921 >      nrecPV_twovtx_++;
922 >    } // End of analyzing res/pull
923 >  } // End of  if(matchedVertexColl1->size() == 1 && matchedVertexColl2->size() == 1 ) {
924 >  else
925 >    edm::LogInfo("Debug")<<"[PVStudy] WARNING: Cannot find matching pvtxs"<<endl;
926 >  
927 >  edm::LogInfo("Debug")<<"[PVStudy] End analyzing the matchedVertexColl"<<endl;
928  
929    //=======================================================
930    // Fill simulated vertices
# Line 764 | Line 935 | PVStudy::analyze(const edm::Event& iEven
935      iEvent.getByLabel("generator",evtMC);
936      if (!evtMC.isValid()) {
937        MC=false;
938 <      if(verbose_){
768 <        cout << "no HepMCProduct found"<< endl;
769 <      }
938 >      edm::LogInfo("Debug") << "[PVStudy] no HepMCProduct found"<< endl;
939      } else {
940 <      if(verbose_){
772 <        cout << "generator HepMCProduct found"<< endl;
773 <      }
940 >      edm::LogInfo("Debug") << "[PVStudy] generator HepMCProduct found"<< endl;
941        MC=true;
942      }
943      
# Line 779 | Line 946 | PVStudy::analyze(const edm::Event& iEven
946        std::vector<simPrimaryVertex> simpv;
947        simpv=getSimPVs(evtMC,"");
948        //     simpv=getSimPVs(evtMC, simVtxs, simTrks);
949 <      h["nsimPV"]->Fill(simpv.size());
950 <      int nsimtrk=0;
951 <      int nrectrk=0;
952 <      
949 >      h_gen->Fill1d("nsimPV", simpv.size());
950 >      nsimPV_ = simpv.size();
951 >
952 >      int isimpv = 0;
953        for(std::vector<simPrimaryVertex>::iterator vsim=simpv.begin();
954 <          vsim!=simpv.end(); vsim++){
955 <        nsimtrk+=vsim->nGenTrk;
956 <        // Loop over the datamodes, for MC, fill only 1, 2, 3
957 <        for (int i=1;i<=3;i++) {
958 <          static const reco::VertexCollection s_empty_vtxColl;
959 <          const reco::VertexCollection *vtxColl = &s_empty_vtxColl;
960 <          std::string suffix;
961 <          // Set the vertexColl and histogram suffix according to datamode
962 <          if (i == 1) {
963 <            vtxColl = splitVertexColl1;
964 <            suffix = "_spl1_mct";
798 <          }
799 <          if (i == 2) {
800 <            vtxColl =  splitVertexColl2;
801 <            suffix = "_spl2_mct";
802 <          }
803 <          if (i == 3) {
804 <            vtxColl =  vertexColl;
805 <            suffix = "_mct";
806 <          }
807 <          //========================================================
808 <          //  look for a matching reconstructed vertex in vertexColl
809 <          //========================================================    
810 <          vsim->recVtx=NULL;
811 <          for(reco::VertexCollection::const_iterator vrec=vtxColl->begin();
812 <              vrec!=vtxColl->end(); ++vrec){
813 <            nrectrk=vrec->tracksSize();
814 <            if(verbose_){
815 <              cout << "sim primary vertex x = " << vsim->x << "; y = " << vsim->y << "; z = " << vsim->z <<  endl;
816 <              cout << "Is matched? " << (matchVertex(*vsim,*vrec)?"Yes":"No") << endl;
817 <            }
818 <            if ( matchVertex(*vsim,*vrec) ){
819 <              // if the matching critera are fulfilled, accept the rec-vertex that is closest in z
820 <              if(    ((vsim->recVtx) && (fabs(vsim->recVtx->position().z()-vsim->z)>fabs(vrec->z()-vsim->z)))
821 <                     || (!vsim->recVtx) )
822 <                vsim->recVtx=&(*vrec);
823 <            }// End of finding the matched reco_vertex
824 <            
825 <            if (vsim->recVtx){
826 <              if(verbose_) {
827 <                cout <<"primary matched in vertexColl" << vsim->x << " " << vsim->y << " " << vsim->z <<  endl;
828 <              }
829 <              double fres_mct[3];
830 <              double ferror_mct[3];
831 <              int fntrk_mct;
832 <              
833 <              fres_mct[0] = vsim->recVtx->x()-vsim->x;
834 <              fres_mct[1] = vsim->recVtx->y()-vsim->y;
835 <              fres_mct[2] = vsim->recVtx->z()-vsim->z;
836 <              ferror_mct[0] = vsim->recVtx->xError();
837 <              ferror_mct[1] = vsim->recVtx->yError();
838 <              ferror_mct[2] = vsim->recVtx->zError();
839 <              fntrk_mct = nrectrk;
840 <              
841 <              //Fill the values for variables in ftree_
842 <              if(i == 1) {
843 <                for(int j = 0;j<3;j++)
844 <                  fres_spl1_mct_[j] = fres_mct[j];
845 <                fntrk_spl1_mct_ =  fntrk_mct;
846 <              }
847 <              if(i == 2) {
848 <                for(int j = 0;j<3;j++)
849 <                  fres_spl2_mct_[j] = fres_mct[j];
850 <                fntrk_spl2_mct_ =  fntrk_mct;
851 <              }
852 <              if(i == 3) {
853 <                for(int j=0;j<3;j++)
854 <                  fres_mct_[j] = fres_mct[j];
855 <                fntrk_mct_ =  fntrk_mct;
856 <              }
857 <              
858 <              h["deltax"+suffix]->Fill( fres_mct[0] );
859 <              h["deltay"+suffix]->Fill( fres_mct[1] );
860 <              h["deltaz"+suffix]->Fill( fres_mct[2] );
861 <              h["pullx"+suffix]->Fill( fres_mct[0]/ferror_mct[0] );
862 <              h["pully"+suffix]->Fill( fres_mct[1]/ferror_mct[1] );
863 <              h["pullz"+suffix]->Fill( fres_mct[2]/ferror_mct[2] );
864 <              h["errPVx"+suffix]->Fill( ferror_mct[0] );
865 <              h["errPVy"+suffix]->Fill( ferror_mct[1] );
866 <              h["errPVz"+suffix]->Fill( ferror_mct[2] );
867 <              pvinfo.push_back(PVStudy::PVInfo(res(fres_mct[0], fres_mct[1], fres_mct[2]),
868 <                                               error(ferror_mct[0], ferror_mct[1], ferror_mct[2]),
869 <                                               fntrk_mct));
870 <              // Fill histo according to its track multiplicity
871 <              fillHisto(res(fres_mct[0], fres_mct[1], fres_mct[2]),
872 <                        error(ferror_mct[0], ferror_mct[1], ferror_mct[2]),
873 <                        fntrk_mct, i);
874 <              if (saventuple_) ftree_->Fill();
875 <              suffix.clear();
876 <            }
877 <            else {  // no rec vertex found for this simvertex
878 <              if(verbose_)
879 <                cout <<"primary not found " << vsim->x << " " << vsim->y << " " << vsim->z << " nGenTrk=" << vsim->nGenTrk << endl;
880 <            }
881 <          }
882 <        } // === End of Looping through vertexColl
954 >          vsim!=simpv.end(); vsim++, isimpv++){
955 >        nsimTrkPV_[isimpv]  =vsim->nGenTrk;
956 >        simx_[isimpv] = vsim->x;
957 >        simy_[isimpv] = vsim->y;
958 >        simz_[isimpv] = vsim->y;
959 >        simptsq_[isimpv] = vsim->ptsq;
960 >        
961 >        //fillMCHisto((std::vector<simPrimaryVertex>::iterator vsim, int isimpv, const reco::VertexCollection *vtxColl, int datatype) {
962 >        fillMCHisto(vsim, isimpv, splitVertexColl1, 1);
963 >        fillMCHisto(vsim, isimpv, splitVertexColl2, 2);
964 >        fillMCHisto(vsim, isimpv, vertexColl, 3);
965        }
966      } // End of  for(std::vector<simPrimaryVertex>::iterator vsim=simpv.begin()
967 <  } // End of Filling MC variables
967 >  } // End of   if (!realData_) {
968 >
969 >  // Finally fill the ftree_
970 >  if(saventuple_) {
971 >    ftree_->Fill();
972 >    pvtxtree_->Fill();
973 >  }
974   }
975  
976   // ------------ method called once each job just before starting event loop  ------------
# Line 894 | Line 982 | PVStudy::beginJob()
982   // ------------ method called once each job just after ending the event loop  ------------
983   void
984   PVStudy::endJob() {
985 <  if (verbose_) cout << "Analyzing PV info" << endl;
985 >  edm::LogInfo("Analysis") << "[endJob] Analyzing PV info" << endl;
986    // Looping through the datamodes available
987    for (vector<int>::const_iterator it= datamode.begin(); it != datamode.end() ; ++it) {  
988      string suffix;
989 <    if(verbose_)  cout<<"datamode = "<< *it<<endl;
989 >    edm::LogInfo("Analysis")<<"[endJob] datamode = "<< *it<<endl;
990      switch(*it) {
991      case 0: suffix = "";
992        break;
# Line 909 | Line 997 | PVStudy::endJob() {
997      case 3: suffix = "_mct";
998        break;
999      }
1000 <    if (analyze_) {
1000 >    suffix += "_nTrk";
1001 >    if(analyze_) {
1002        for (int ntrk=nTrkMin_;ntrk<=nTrkMax_;++ntrk) {
1003 +        edm::LogInfo("Analysis") << "[endJob] ntrk = " << ntrk << endl;
1004          PVStudy::PVAnaInfo ipv = GetPVAnaInfo(ntrk,*it);
1005 <        if (verbose_) cout << "Fill point of ntrk = " << ntrk << endl;
1006 <        if ( ipv.res_.x() > 0 ) h2["resx"+suffix+"_nTrk"]->Fill(ntrk,ipv.res_.x(), 1.);
1007 <        if ( ipv.res_.y() > 0 ) h2["resy"+suffix+"_nTrk"]->Fill(ntrk,ipv.res_.y(), 1.);
1008 <        if ( ipv.res_.z() > 0 ) h2["resz"+suffix+"_nTrk"]->Fill(ntrk,ipv.res_.z(), 1.);
1009 <        if ( ipv.pull_.x() > 0 ) h2["pullx"+suffix+"_nTrk"]->Fill(ntrk,ipv.pull_.x(), 1.);
1010 <        if ( ipv.pull_.y() > 0 ) h2["pully"+suffix+"_nTrk"]->Fill(ntrk,ipv.pull_.y(), 1.);
921 <        if ( ipv.pull_.z() > 0 ) h2["pullz"+suffix+"_nTrk"]->Fill(ntrk,ipv.pull_.z(), 1.);
1005 >        if ( ipv.res_.x() > 0 ) h_ana->Fill2d("resx"+suffix, ntrk,ipv.res_.x());
1006 >        if ( ipv.res_.y() > 0 ) h_ana->Fill2d("resy"+suffix, ntrk,ipv.res_.y());
1007 >        if ( ipv.res_.z() > 0 ) h_ana->Fill2d("resz"+suffix, ntrk,ipv.res_.z());
1008 >        if ( ipv.pull_.x() > 0 ) h_ana->Fill2d("pullx"+suffix, ntrk,ipv.pull_.x());
1009 >        if ( ipv.pull_.y() > 0 ) h_ana->Fill2d("pully"+suffix, ntrk,ipv.pull_.y());
1010 >        if ( ipv.pull_.z() > 0 ) h_ana->Fill2d("pullz"+suffix, ntrk,ipv.pull_.z());
1011        }
1012      }
1013      suffix.clear();
# Line 926 | Line 1015 | PVStudy::endJob() {
1015    if(saventuple_) {
1016      file_->cd();
1017      ftree_->Write();
1018 +    pvtxtree_->Write();
1019      file_->Close();
1020    }
1021   }
# Line 942 | Line 1032 | bool PVStudy::matchVertex(const PVStudy:
1032   }
1033  
1034   // Match two reconstructed vertices
1035 < bool PVStudy::matchVertex( const reco::Vertex & vrec1,
1036 <                           const reco::Vertex & vrec2)
1035 > bool PVStudy::matchVertex( const reco::VertexRef & vrec1,
1036 >                           const reco::VertexRef & vrec2,
1037 >                           int zsigncut)
1038   {
1039 <  return (fabs(vrec1.z()-vrec2.z())<0.0500); // =500um
1039 >  double cut = zsigncut*max(vrec1->zError(), vrec2->zError());
1040 >  edm::LogInfo("Debug")<<"[matchVertex] The matching criteria in z is "<<cut<<endl;
1041 >  return (fabs(vrec1->z()-vrec2->z())<cut);
1042   }
1043  
1044  
1045   bool PVStudy::isResonance(const HepMC::GenParticle * p){
1046    double ctau=(pdt->particle( abs(p->pdg_id()) ))->lifetime();
1047 <  if(verbose_) cout << "isResonance   " << p->pdg_id() << " " << ctau << endl;
1047 >  edm::LogInfo("Debug") << "[isResonance] isResonance   " << p->pdg_id() << " " << ctau << endl;
1048    return  ctau >0 && ctau <1e-6;
1049   }
1050  
# Line 1023 | Line 1116 | void PVStudy::printSimTrks(const Handle<
1116   void PVStudy::fillHisto(res r, error er, int ntk, int datamode){
1117    stringstream ss;
1118    ss << ntk;
1119 <  string suffix = ss.str();
1120 <  if(datamode == 0 )  suffix = "_" + suffix;
1121 <  if(datamode == 1 )  suffix = "_spl1_mct_" + suffix;
1122 <  if(datamode == 2 )  suffix = "_spl2_mct_" + suffix;
1123 <  if(datamode == 3 )  suffix = "_mct_" + suffix;
1119 >  string suffix;
1120 >  if(datamode == 0 )  suffix = "_" + ss.str();
1121 >  if(datamode == 1 )  suffix = "_spl1_mct_" + ss.str();
1122 >  if(datamode == 2 )  suffix = "_spl2_mct_" + ss.str();
1123 >  if(datamode == 3 )  suffix = "_mct_" + ss.str();
1124    
1125    if (ntk < nTrkMin_ || ntk > nTrkMax_ ) return;
1126    // Fill histograms of res and pull of ntk
1127 <  h["deltax"+suffix]->Fill(r.x());
1128 <  h["deltay"+suffix]->Fill(r.y());
1129 <  h["deltaz"+suffix]->Fill(r.z());
1130 <  h["pullx"+suffix]->Fill(r.x()/er.x());
1131 <  h["pully"+suffix]->Fill(r.y()/er.y());
1132 <  h["pullz"+suffix]->Fill(r.z()/er.z());  
1133 <  h["errPVx"+suffix]->Fill(er.x());
1134 <  h["errPVy"+suffix]->Fill(er.y());
1135 <  h["errPVz"+suffix]->Fill(er.z());
1127 >  h_others->Fill1d("deltax"+suffix, r.x());
1128 >  h_others->Fill1d("deltay"+suffix, r.y());
1129 >  h_others->Fill1d("deltaz"+suffix, r.z());
1130 >  h_others->Fill1d("pullx"+suffix, r.x()/er.x());
1131 >  h_others->Fill1d("pully"+suffix, r.y()/er.y());
1132 >  h_others->Fill1d("pullz"+suffix, r.z()/er.z());  
1133 >  h_others->Fill1d("errPVx"+suffix, er.x());
1134 >  h_others->Fill1d("errPVy"+suffix, er.y());
1135 >  h_others->Fill1d("errPVz"+suffix, er.z());
1136   }
1137  
1138   PVStudy::PVAnaInfo PVStudy::GetPVAnaInfo(int ntk, int datamode) {
# Line 1059 | Line 1152 | PVStudy::PVAnaInfo PVStudy::GetPVAnaInfo
1152      for ( int i = 0; i < 6; ++i) {
1153        switch (i) {
1154        case 0:
1155 <        fit(h["deltax"+suffix], fpar);
1155 >        if (!h_others->ReadHisto1D("deltax"+suffix)) break;
1156 >        fit(h_others->ReadHisto1D("deltax"+suffix), fpar);
1157          data[i] = fpar[0]*cm2um;
1158          break;
1159        case 1:
1160 <        fit(h["deltay"+suffix], fpar);
1160 >        if (!h_others->ReadHisto1D("deltay"+suffix)) break;
1161 >        fit(h_others->ReadHisto1D("deltay"+suffix), fpar);
1162          data[i] = fpar[0]*cm2um;
1163          break;
1164        case 2:
1165 <        fit(h["deltaz"+suffix], fpar);
1165 >        if (!h_others->ReadHisto1D("deltaz"+suffix)) break;
1166 >        fit(h_others->ReadHisto1D("deltaz"+suffix), fpar);
1167          data[i] = fpar[0]*cm2um;
1168          break;
1169        case 3:
1170 <        fit(h["pullx"+suffix], fpar);
1170 >        if (!h_others->ReadHisto1D("pullx"+suffix)) break;
1171 >        fit(h_others->ReadHisto1D("pullx"+suffix), fpar);
1172          data[i] = fpar[0];
1173          break;
1174        case 4:
1175 <        fit(h["pully"+suffix], fpar);
1175 >        if (!h_others->ReadHisto1D("pully"+suffix)) break;
1176 >        fit(h_others->ReadHisto1D("pully"+suffix), fpar);
1177          data[i] = fpar[0];
1178          break;
1179        case 5:
1180 <        fit(h["pullz"+suffix], fpar);
1180 >        if (!h_others->ReadHisto1D("pullz"+suffix)) break;
1181 >        fit(h_others->ReadHisto1D("pullz"+suffix), fpar);
1182          data[i] = fpar[0];
1183          break;
1184        }
1185 <      if (verbose_ && data[i] > 0) cout << "data[" << i << "] = " << data[i] << (i<3?" micro m":" ") << endl;
1185 >      if (data[i] > 0) edm::LogInfo("Analysis") << "[Analysis] data[" << i << "] = " << data[i] << (i<3?" micro m":" ") << endl;
1186      }
1187    }
1188    else
# Line 1098 | Line 1197 | PVStudy::PVAnaInfo PVStudy::GetPVAnaInfo
1197                              ntk);
1198   }
1199  
1200 < void PVStudy::fit(TH1 *&hdist, double fitPars[]){
1200 > void PVStudy::fit(TH1 *hdist, double fitPars[]){
1201    TAxis *axis0 = hdist->GetXaxis();
1202    int nbin = axis0->GetLast();
1203    double nOF = hdist->GetBinContent(nbin+1);
# Line 1107 | Line 1206 | void PVStudy::fit(TH1 *&hdist, double fi
1206    double fitRange = axis0->GetXmax();
1207    double sigMax[2] = {0.,0.};
1208  
1209 <  if ( verbose_ ){
1210 <    cout << "Last bin = " << nbin;
1211 <    cout << "; hdist: Overflow Entries = " << nOF;
1212 <    cout << "; Underflow Entries = " << nUF;
1213 <    cout << "; hdist->GetEntries() = " << hdist->GetEntries();
1214 <    cout << "; fitting range = " << -fitRange << " to " << fitRange << endl;
1116 <  }
1209 >  edm::LogInfo("Analysis") << "[Fit] Last bin = " << nbin
1210 >                           << "; hdist: Overflow Entries = " << nOF
1211 >                           << "; Underflow Entries = " << nUF
1212 >                           << "; hdist->GetEntries() = " << hdist->GetEntries()
1213 >                           << "; fitting range = " << -fitRange << " to " << fitRange << endl;
1214 >
1215    if (hdist->GetEntries() - nOF - nUF >= 10) { // FIXME: for reasonable Gaussian fit
1216      for (int bi = 0; bi < nbin; bi++) {
1217        if ( (axis0->GetBinLowEdge(bi) < 0) && (hdist->GetBinContent(bi) > 0) ) {
# Line 1125 | Line 1223 | void PVStudy::fit(TH1 *&hdist, double fi
1223          if ( abs(sigMax[0]) > abs(sigMax[1]) ) sigMax[1] = abs(sigMax[0]);
1224        }
1225      }
1226 <    if (verbose_) cout << "Fit sigMax = " << sqrt(2.)*sigMax[1] << endl;
1226 >    //edm::LogInfo("Analysis") << "[Fit] Fit sigMax = " << sqrt(2.)*sigMax[1] << endl;
1227  
1228      TF1 *fgaus = new TF1("fgaus","gaus",-fitRange, fitRange);
1229      fgaus->SetParameter(1, 0.);
# Line 1138 | Line 1236 | void PVStudy::fit(TH1 *&hdist, double fi
1236      s->SetOptStat(1111111);
1237      s->SetOptFit(0111);
1238      gPad->Update();
1239 <    if (verbose_) cout << "got function" << endl;
1239 >    //edm::LogInfo("Analysis") << "[Fit] got function" << endl;
1240      fitPars[0] = ((fgaus->GetParameter(2))?fgaus->GetParameter(2):-999);
1241    }
1242    else
1243      fitPars[0] = -999;
1244   }
1245  
1246 + void PVStudy::fillTrackHisto(const reco::TrackCollection *trackColl, int datatype) {
1247 +  string suffix;
1248 +  suffix = ""; // for unsplit tracks
1249 +  if(datatype == 1) suffix = "1_spl"; // for splittracks 1
1250 +  if(datatype == 2) suffix = "2_spl"; // for splittracks 2
1251 +  
1252 +  h_pvtrk->Fill1d("nTrk"+suffix, trackColl->size());
1253 +  for(reco::TrackCollection::const_iterator itTrack = trackColl->begin();
1254 +      itTrack != trackColl->end();                      
1255 +      ++itTrack) {
1256 +    h_pvtrk->Fill1d("trkPt"+suffix, itTrack->pt());
1257 +    h_pvtrk->Fill1d("trkDxy"+suffix, itTrack->dxy());
1258 +    h_pvtrk->Fill1d("trkDz"+suffix, itTrack->dz());
1259 +    h_pvtrk->Fill1d("trkEta"+suffix, itTrack->eta());
1260 +    h_pvtrk->Fill1d("trkPhi"+suffix, itTrack->phi());
1261 +  }
1262 + }
1263 +
1264 + void PVStudy::fillTrackHistoInPV(const reco::VertexCollection *vertexColl, int datatype, bool fillHisto, bool fillNtuple) {
1265 +  string suffix;
1266 +  suffix = ""; // for unsplit tracks
1267 +  if(datatype == 1) suffix = "1_spl"; // for splittracks 1
1268 +  if(datatype == 2) suffix = "2_spl"; // for splittracks 2
1269 +  int ivtx = 0;
1270 +  for(reco::VertexCollection::const_iterator v=vertexColl->begin();
1271 +      v!=vertexColl->end(); ++v, ++ivtx) {  
1272 +    if(fillNtuple) {
1273 +      if(datatype == 0) {
1274 +        nTrkPV_[ivtx] = v->tracksSize();        
1275 +        sumptsq_[ivtx] = sumPtSquared(*v);
1276 +        isValid_[ivtx] = v->isValid();
1277 +        isFake_[ivtx] = v->isFake();    
1278 +        recx_[ivtx] = v->x();
1279 +        recy_[ivtx] = v->y();
1280 +        recz_[ivtx] = v->z();
1281 +        recx_err_[ivtx] = v->xError();
1282 +        recy_err_[ivtx] = v->yError();
1283 +        recz_err_[ivtx] = v->zError();
1284 +      }
1285 +      if(datatype == 1) {
1286 +        nTrkPV1_spl_[ivtx] = v->tracksSize();  
1287 +        sumptsq1_spl_[ivtx] = sumPtSquared(*v);        
1288 +        isValid1_spl_[ivtx] = v->isValid();
1289 +        isFake1_spl_[ivtx] = v->isFake();      
1290 +        recx1_spl_[ivtx] = v->x();
1291 +        recy1_spl_[ivtx] = v->y();
1292 +        recz1_spl_[ivtx] = v->z();
1293 +        recx1_err_spl_[ivtx] = v->xError();
1294 +        recy1_err_spl_[ivtx] = v->yError();
1295 +        recz1_err_spl_[ivtx] = v->zError();
1296 +
1297 +      }
1298 +      if(datatype == 2) {
1299 +        nTrkPV2_spl_[ivtx] = v->tracksSize();  
1300 +        sumptsq2_spl_[ivtx] = sumPtSquared(*v);        
1301 +        isValid2_spl_[ivtx] = v->isValid();
1302 +        isFake2_spl_[ivtx] = v->isFake();
1303 +        recx2_spl_[ivtx] = v->x();
1304 +        recy2_spl_[ivtx] = v->y();
1305 +        recz2_spl_[ivtx] = v->z();
1306 +        recx2_err_spl_[ivtx] = v->xError();
1307 +        recy2_err_spl_[ivtx] = v->yError();
1308 +        recz2_err_spl_[ivtx] = v->zError();
1309 +      }
1310 +      if(datatype == 4) { // for pixelVertices
1311 +        nTrkPV_pxlpvtx_[ivtx] = v->tracksSize();        
1312 +        sumptsq_pxlpvtx_[ivtx] = sumPtSquared(*v);      
1313 +        isValid_pxlpvtx_[ivtx] = v->isValid();
1314 +        isFake_pxlpvtx_[ivtx] = v->isFake();
1315 +        recx_pxlpvtx_[ivtx] = v->x();
1316 +        recy_pxlpvtx_[ivtx] = v->y();
1317 +        recz_pxlpvtx_[ivtx] = v->z();
1318 +        recx_err_pxlpvtx_[ivtx] = v->xError();
1319 +        recy_err_pxlpvtx_[ivtx] = v->yError();
1320 +        recz_err_pxlpvtx_[ivtx] = v->zError();
1321 +      }
1322 +    }
1323 +  }
1324 +  // For histogram only fill the leading pvtx parameters
1325 +  if(fillHisto) {
1326 +    h_pvtrk->Fill1d("nTrkPV"+suffix, vertexColl->begin()->tracksSize());
1327 +    try {
1328 +      for(reco::Vertex::trackRef_iterator t = vertexColl->begin()->tracks_begin();
1329 +          t!=vertexColl->begin()->tracks_end(); t++) {
1330 +        // illegal charge
1331 +        if ( (**t).charge() < -1 || (**t).charge() > 1 ) {
1332 +          //      h_pvtrk->Fill1d("trkPtPV", 0.);
1333 +        }
1334 +        else {
1335 +          h_pvtrk->Fill1d("trkPtPV"+suffix, (**t).pt());
1336 +          h_pvtrk->Fill1d("trkDxyPV"+suffix, (**t).dxy());
1337 +          h_pvtrk->Fill1d("trkDzPV"+suffix, (**t).dz());
1338 +          h_pvtrk->Fill1d("trkEtaPV"+suffix, (**t).eta());
1339 +          h_pvtrk->Fill1d("trkPhiPV"+suffix, (**t).phi());
1340 +        }
1341 +      }
1342 +    }
1343 +    catch (...) {
1344 +      // exception thrown when trying to use linked track
1345 +      //          h_pvtrk->Fill1d("trkPtPV", 0.);
1346 +    }
1347 +  }
1348 +  
1349 + }
1350 +
1351 + void PVStudy::fillMCHisto(std::vector<simPrimaryVertex>::iterator vsim, int isimpv, const reco::VertexCollection *vtxColl, int datatype)
1352 + {
1353 +  std::string suffix;
1354 +  // Set the vertexColl and histogram suffix according to datamode
1355 +  if (datatype == 1) {
1356 +    suffix = "_spl1_mct";
1357 +    nrecPV_spl1_mct_ = 0;  
1358 +  }
1359 +  if (datatype == 2) {
1360 +    suffix = "_spl2_mct";
1361 +    nrecPV_spl2_mct_ = 0;    
1362 +  }
1363 +  if (datatype == 3) {
1364 +    suffix = "_mct";
1365 +    nrecPV_mct_ = 0;  
1366 +  }
1367 +  
1368 +  //========================================================
1369 +  //  look for a matching reconstructed vertex in vertexColl
1370 +  //========================================================        
1371 +
1372 +  for(reco::VertexCollection::const_iterator vrec=vtxColl->begin();
1373 +      vrec!=vtxColl->end(); ++vrec){
1374 +    int nrectrk = vrec->tracksSize();
1375 +    vsim->recVtx=NULL;  
1376 +  
1377 +    edm::LogInfo("Debug") << "[fillMCHisto] sim primary vertex x = " << vsim->x << "; y = " << vsim->y << "; z = " << vsim->z <<  endl;
1378 +    edm::LogInfo("Debug") << "[fillMCHisto] Is matched? " << (matchVertex(*vsim,*vrec)?"Yes":"No") << endl;
1379 +
1380 +    if ( matchVertex(*vsim,*vrec) && vrec->isValid() && !vrec->isFake() ) {
1381 +      vsim->recVtx=&(*vrec);
1382 +      
1383 +      // if the matching critera are fulfilled, accept the rec-vertex that is closest in z
1384 +      //if(    ((vsim->recVtx) && (fabs(vsim->recVtx->position().z()-vsim->z)>fabs(vrec->z()-vsim->z)))
1385 +      //|| (!vsim->recVtx) )
1386 +      //vsim->recVtx=&(*vrec);
1387 +      //}
1388 +      edm::LogInfo("Debug") <<"[fillMCHisto] primary matched in vertexColl" << vsim->x << " " << vsim->y << " " << vsim->z <<  endl;
1389 +      
1390 +      double fres_mct[3];
1391 +      double ferror_mct[3];
1392 +      
1393 +      fres_mct[0] = vsim->recVtx->x()-vsim->x;
1394 +      fres_mct[1] = vsim->recVtx->y()-vsim->y;
1395 +      fres_mct[2] = vsim->recVtx->z()-vsim->z;
1396 +      ferror_mct[0] = vsim->recVtx->xError();
1397 +      ferror_mct[1] = vsim->recVtx->yError();
1398 +      ferror_mct[2] = vsim->recVtx->zError();
1399 +      
1400 +      h_summary->Fill1d("deltax"+suffix, fres_mct[0] );
1401 +      h_summary->Fill1d("deltay"+suffix, fres_mct[1] );
1402 +      h_summary->Fill1d("deltaz"+suffix, fres_mct[2] );
1403 +      h_summary->Fill1d("pullx"+suffix, fres_mct[0]/ferror_mct[0] );
1404 +      h_summary->Fill1d("pully"+suffix, fres_mct[1]/ferror_mct[1] );
1405 +      h_summary->Fill1d("pullz"+suffix, fres_mct[2]/ferror_mct[2] );
1406 +      h_summary->Fill1d("errPVx"+suffix, ferror_mct[0] );
1407 +      h_summary->Fill1d("errPVy"+suffix, ferror_mct[1] );
1408 +      h_summary->Fill1d("errPVz"+suffix, ferror_mct[2] );
1409 +      pvinfo.push_back(PVStudy::PVInfo(res(fres_mct[0], fres_mct[1], fres_mct[2]),
1410 +                                       error(ferror_mct[0], ferror_mct[1], ferror_mct[2]),
1411 +                                       nrectrk));
1412 +      // Fill histo according to its track multiplicity
1413 +      fillHisto(res(fres_mct[0], fres_mct[1], fres_mct[2]),
1414 +                error(ferror_mct[0], ferror_mct[1], ferror_mct[2]),
1415 +                nrectrk, datatype);
1416 +      
1417 +      if(saventuple_) {
1418 +        //Fill the values for variables in ftree_  
1419 +        if(datatype == 1) {
1420 +          nTrkPV_spl1_mct_[nrecPV_spl1_mct_] =   nrectrk;
1421 +          deltax_spl1_mct_[nrecPV_spl1_mct_] =  fres_mct[0];
1422 +          deltay_spl1_mct_[nrecPV_spl1_mct_] =  fres_mct[0];
1423 +          deltaz_spl1_mct_[nrecPV_spl1_mct_] =  fres_mct[0];
1424 +          pullx_spl1_mct_[nrecPV_spl1_mct_] = fres_mct[0]/ferror_mct[0];  
1425 +          pully_spl1_mct_[nrecPV_spl1_mct_] = fres_mct[1]/ferror_mct[1];
1426 +          pullz_spl1_mct_[nrecPV_spl1_mct_] =  fres_mct[2]/ferror_mct[2];
1427 +          nrecPV_spl1_mct_++;
1428 +        }
1429 +        
1430 +        if(datatype == 2) {
1431 +          nTrkPV_spl2_mct_[nrecPV_spl2_mct_] = nrectrk;
1432 +          deltax_spl2_mct_[nrecPV_spl2_mct_] =  fres_mct[0];
1433 +          deltay_spl2_mct_[nrecPV_spl2_mct_] =  fres_mct[0];
1434 +          deltaz_spl2_mct_[nrecPV_spl2_mct_] =  fres_mct[0];
1435 +          pullx_spl2_mct_[nrecPV_spl2_mct_] = fres_mct[0]/ferror_mct[0];  
1436 +          pully_spl2_mct_[nrecPV_spl2_mct_] = fres_mct[1]/ferror_mct[1];
1437 +          pullz_spl2_mct_[nrecPV_spl2_mct_] =  fres_mct[2]/ferror_mct[2];
1438 +          nrecPV_spl2_mct_++;
1439 +        }
1440 +        if(datatype == 3) {    
1441 +          nTrkPV_mct_[nrecPV_mct_] = nrectrk;
1442 +          deltax_mct_[nrecPV_mct_] =  fres_mct[0];
1443 +          deltay_mct_[nrecPV_mct_] =  fres_mct[0];
1444 +          deltaz_mct_[nrecPV_mct_] =  fres_mct[0];
1445 +          pullx_mct_[nrecPV_mct_] = fres_mct[0]/ferror_mct[0];  
1446 +          pully_mct_[nrecPV_mct_] = fres_mct[1]/ferror_mct[1];
1447 +          pullz_mct_[nrecPV_mct_] =  fres_mct[2]/ferror_mct[2];          
1448 +          nrecPV_mct_++;
1449 +        }
1450 +      } // End of  if(saventuple_) {
1451 +    } //  if ( matchVertex(*vsim,*vrec) ) {
1452 +    else {  // no rec vertex found for this simvertex
1453 +      edm::LogInfo("Debug") <<"[fillMCHisto] primary not found " << vsim->x << " " << vsim->y << " " << vsim->z << " nGenTrk=" << vsim->nGenTrk << endl;
1454 +    }
1455 +  }
1456 + }
1457 +
1458 +
1459   void PVStudy::SetVarToZero() {
1460 +  //Greg's variables
1461 +  fntrk_ = 0;
1462 +  //pvtx position (x,y,z) residual and error
1463 +  for(int i = 0; i<3;i++)    {
1464 +    fres_[i] = 0;
1465 +    ferror_[i] = 0;
1466 +  }
1467    
1468 <  // number of reconstructed vertices
1468 >  //Yanyan's variables
1469 >  // Number of reconstructed vertices  
1470    nrecPV_ = 0;
1471 <  nrecPV1_spl_ = 0;
1471 >  nrecPV1_spl_ = 0;
1472    nrecPV2_spl_ = 0;
1473 <  // number of tracks in the vertex
1474 <  fntrk_ = 0;
1475 <  fntrk_spl1_mct_ = 0;
1476 <  fntrk_spl2_mct_ = 0;
1477 <  fntrk_mct_ = 0;
1478 <  //pvtx position (x,y,z) residual and error
1479 <  for(int i = 0; i<3;i++)
1480 <    {
1481 <      fres_[i] = 0;
1482 <      ferror_[i] = 0;
1483 <      fres_spl1_mct_[i] = 0;
1484 <      ferror_spl1_mct_[i] = 0;
1485 <      fres_spl2_mct_[i] = 0;
1486 <      ferror_spl2_mct_[i] = 0;
1487 <      fres_mct_[i] = 0;
1488 <      ferror_mct_[i] = 0;
1489 <    }
1473 >  nrecPV_twovtx_ = 0;
1474 >  nsimPV_ = 0;
1475 >
1476 >  nrecPV_mct_ = 0;
1477 >  nrecPV_spl1_mct_ = 0;
1478 >  nrecPV_spl2_mct_ = 0;
1479 >
1480 >  // Mininum separation between the secondary pvtxes and leading pvtx
1481 >  min_zsep_ = 9999.0;
1482 >  min_ntrksep_ = 9999.0;
1483 >  min_sumpt2sep_ = -9999.0;
1484 >  
1485 >
1486 >  for (int i = 0; i < nMaxPVs_; i++) {
1487 >    // recoVertices with all tracks
1488 >    nTrkPV_[i] = 0; // Number of tracks in the pvtx    
1489 >    sumptsq_[i] = 0;
1490 >    isValid_[i] = -1;
1491 >    isFake_[i] = -1;
1492 >    recx_[i] = 0;
1493 >    recy_[i] = 0;
1494 >    recz_[i] = 0;
1495 >    recx_err_[i] = 0;
1496 >    recy_err_[i] = 0;
1497 >    recz_err_[i] = 0;
1498 >    
1499 >    // recoVertices with splitTrack1
1500 >    nTrkPV1_spl_[i] = 0; // Number of tracks in the pvtx    
1501 >    sumptsq1_spl_[i] = 0;
1502 >    isValid1_spl_[i] = -1;
1503 >    isFake1_spl_[i] = -1;
1504 >    recx1_spl_[i] = 0;
1505 >    recy1_spl_[i] = 0;
1506 >    recz1_spl_[i] = 0;
1507 >    recx1_err_spl_[i] = 0;
1508 >    recy1_err_spl_[i] = 0;
1509 >    recz1_err_spl_[i] = 0;
1510 >  
1511 >    // recoVertices with splitTrack2
1512 >    nTrkPV2_spl_[i] = 0; // Number of tracks in the pvtx  
1513 >    sumptsq2_spl_[i] = 0;
1514 >    isValid2_spl_[i] = -1;
1515 >    isFake2_spl_[i] = -1;
1516 >    recx2_spl_[i] = 0;
1517 >    recy2_spl_[i] = 0;
1518 >    recz2_spl_[i] = 0;
1519 >    recx2_err_spl_[i] = 0;
1520 >    recy2_err_spl_[i] = 0;
1521 >    recz2_err_spl_[i] = 0;
1522 >    
1523 >    //pixelVertices
1524 >    nTrkPV_pxlpvtx_[i] = 0; // Number of tracks in the pvtx  
1525 >    sumptsq_pxlpvtx_[i] = 0;
1526 >    isValid_pxlpvtx_[i] = -1;
1527 >    isFake_pxlpvtx_[i] = -1;
1528 >    recx_pxlpvtx_[i] = 0;
1529 >    recy_pxlpvtx_[i] = 0;
1530 >    recz_pxlpvtx_[i] = 0;
1531 >    recx_err_pxlpvtx_[i] = 0;
1532 >    recy_err_pxlpvtx_[i] = 0;
1533 >    recz_err_pxlpvtx_[i] = 0;
1534 >
1535 >    // matched two-vertices
1536 >    nTrkPV1_spl_twovtx_[i] = 0;
1537 >    nTrkPV2_spl_twovtx_[i] = 0;
1538 >    nTrkPV_twovtx_[i] = 0;  
1539 >    sumptsq1_spl_twovtx_[i] = 0; // Sum of pT squred in the pvtx
1540 >    sumptsq2_spl_twovtx_[i] = 0; // Sum of pT squred in the pvtx
1541 >    deltax_twovtx_[i] = 0;
1542 >    deltay_twovtx_[i] = 0;
1543 >    deltaz_twovtx_[i] = 0;
1544 >    errx_twovtx_[i] = 0;
1545 >    erry_twovtx_[i] = 0;
1546 >    errz_twovtx_[i] = 0;
1547 >    pullx_twovtx_[i] = 0;
1548 >    pully_twovtx_[i] = 0;
1549 >    pullz_twovtx_[i] = 0;
1550 >    
1551 >    //simpv
1552 >    nsimTrkPV_[i] = 0;
1553 >    simx_[i] = 0;
1554 >    simy_[i] = 0;
1555 >    simz_[i] = 0;
1556 >    simptsq_[i] = 0;
1557 >    
1558 >    // residual and pulls with mc truth required
1559 >    deltax_mct_[i] = 0;
1560 >    deltay_mct_[i] = 0;
1561 >    deltaz_mct_[i] = 0;
1562 >    pullx_mct_[i] = 0;
1563 >    pully_mct_[i] = 0;
1564 >    pullz_mct_[i] = 0;
1565 >        
1566 >    deltax_spl1_mct_[i] = 0;
1567 >    deltay_spl1_mct_[i] = 0;
1568 >    deltaz_spl1_mct_[i] = 0;
1569 >    pullx_spl1_mct_[i] = 0;
1570 >    pully_spl1_mct_[i] = 0;
1571 >    pullz_spl1_mct_[i] = 0;
1572 >    
1573 >    deltax_spl2_mct_[i] = 0;
1574 >    deltay_spl2_mct_[i] = 0;
1575 >    deltaz_spl2_mct_[i] = 0;
1576 >    pullx_spl2_mct_[i] = 0;
1577 >    pully_spl2_mct_[i] = 0;
1578 >    pullz_spl2_mct_[i] = 0;
1579 >  }
1580 >  
1581   }
1582  
1583 + double PVStudy::sumPtSquared(const reco::Vertex & v)  {
1584 +  double sum = 0.;
1585 +  double pT;
1586 +  for (reco::Vertex::trackRef_iterator it = v.tracks_begin(); it != v.tracks_end(); it++) {
1587 +    pT = (**it).pt();
1588 +    sum += pT*pT;
1589 +  }
1590 +  return sum;
1591 + }
1592  

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