| 1 |
paus |
1.1 |
#!/bin/bash
|
| 2 |
|
|
#===================================================================================================
|
| 3 |
|
|
# Submit a set of jobs to run over a given dataset, splitting the jobs according to the filesets.
|
| 4 |
|
|
#
|
| 5 |
|
|
# Version 1.0 November 14, 2008
|
| 6 |
|
|
#===================================================================================================
|
| 7 |
|
|
# Read the arguments
|
| 8 |
|
|
echo " "
|
| 9 |
|
|
echo "Starting data processing with arguments:"
|
| 10 |
|
|
echo " --> $*"
|
| 11 |
|
|
|
| 12 |
|
|
runMacro=$1
|
| 13 |
|
|
catalogDir=$2
|
| 14 |
|
|
book=$3
|
| 15 |
|
|
dataset=$4
|
| 16 |
|
|
skim=$5
|
| 17 |
|
|
outputName=$6
|
| 18 |
|
|
outputDir=$7
|
| 19 |
|
|
runTypeIndex=$8
|
| 20 |
|
|
noStage=$9
|
| 21 |
|
|
|
| 22 |
|
|
jobId=`date +%j%m%d%k%M%S`
|
| 23 |
|
|
dataDir=`tail -1 $catalogDir/$book/$dataset/Filesets | cut -d' ' -f2`
|
| 24 |
|
|
|
| 25 |
|
|
# Prepare environment
|
| 26 |
|
|
echo " "
|
| 27 |
|
|
echo " Process: dataset=$dataset, book=$book, catalog=$catalogDir"
|
| 28 |
|
|
#echo " "
|
| 29 |
|
|
workDir=/home/$USER/cms/condor
|
| 30 |
|
|
mkdir -p $workDir
|
| 31 |
|
|
cd $workDir
|
| 32 |
|
|
cp /home/$USER/cms/root/.rootlogon.C $workDir
|
| 33 |
|
|
cp $MIT_ANA_DIR/bin/run.sh $workDir
|
| 34 |
|
|
cp $MIT_HGG_DIR/macros/$runMacro $workDir
|
| 35 |
|
|
script=$workDir/run.sh
|
| 36 |
|
|
|
| 37 |
|
|
# Create the directory for the results
|
| 38 |
|
|
mkdir -p $workDir/res/$outputName/$book/$dataset/
|
| 39 |
|
|
|
| 40 |
|
|
# Looping through each single fileset and submitting the condor jobs
|
| 41 |
|
|
echo " Submitting jobs to condor"
|
| 42 |
|
|
|
| 43 |
|
|
if [ "$skim" == "noskim" ]
|
| 44 |
|
|
then
|
| 45 |
|
|
filesets=$catalogDir/$book/$dataset/Filesets
|
| 46 |
|
|
else
|
| 47 |
|
|
filesets=$catalogDir/$book/$dataset/$skim/Filesets
|
| 48 |
|
|
fi
|
| 49 |
|
|
|
| 50 |
|
|
for fileset in `cat $filesets | cut -d' ' -f1 `
|
| 51 |
|
|
do
|
| 52 |
|
|
# check if the output already exists
|
| 53 |
|
|
rFile="$outputDir/$outputName/$book/$dataset"
|
| 54 |
|
|
rFile=`ls $rFile/${outputName}_${dataset}_${skim}_${fileset}*.root 2> /dev/null`
|
| 55 |
|
|
|
| 56 |
|
|
if [ -f "$rFile" ]
|
| 57 |
|
|
then
|
| 58 |
|
|
echo " File: $rFile exists already."
|
| 59 |
|
|
else
|
| 60 |
|
|
logFile=`echo $book/$dataset/$fileset | tr '/' '+'`
|
| 61 |
|
|
logFile=/tmp/$USER/$logFile
|
| 62 |
|
|
mkdir -p /tmp/$USER
|
| 63 |
|
|
rm -f $logFile
|
| 64 |
|
|
echo " $script $runMacro $catalogDir $book $dataset $skim $fileset $outputName $outputDir $runTypeIndex"
|
| 65 |
|
|
|
| 66 |
|
|
cat > submit.cmd <<EOF
|
| 67 |
|
|
Universe = vanilla
|
| 68 |
|
|
Requirements = ((Arch == "X86_64" || Arch == "INTEL") && (OpSys == "LINUX") && (Disk >= DiskUsage) && ((Memory * 1024) >= ImageSize) && (HasFileTransfer))
|
| 69 |
|
|
Notification = Error
|
| 70 |
|
|
Executable = $script
|
| 71 |
|
|
Arguments = $runMacro $catalogDir $book $dataset $skim $fileset $outputName $outputDir $runTypeIndex
|
| 72 |
|
|
Rank = Mips
|
| 73 |
|
|
GetEnv = True
|
| 74 |
|
|
Initialdir = $workDir
|
| 75 |
|
|
Input = /dev/null
|
| 76 |
|
|
Output = $workDir/res/$outputName/$book/$dataset/${skim}_${runTypeIndex}_${fileset}.out
|
| 77 |
|
|
Error = $workDir/res/$outputName/$book/$dataset/${skim}_${runTypeIndex}_${fileset}.err
|
| 78 |
|
|
Log = $logFile
|
| 79 |
|
|
should_transfer_files = YES
|
| 80 |
|
|
when_to_transfer_output = ON_EXIT
|
| 81 |
|
|
Queue
|
| 82 |
|
|
EOF
|
| 83 |
|
|
|
| 84 |
|
|
condor_submit submit.cmd >& /dev/null;
|
| 85 |
|
|
rm submit.cmd
|
| 86 |
|
|
fi
|
| 87 |
|
|
done
|
| 88 |
|
|
|
| 89 |
|
|
exit 0
|
