| 1 |
#!/bin/bash
|
| 2 |
#---------------------------------------------------------------------------------------------------
|
| 3 |
# Remove all jobs related with a given task and sample.
|
| 4 |
#---------------------------------------------------------------------------------------------------
|
| 5 |
H=`basename $0`
|
| 6 |
TASK=$1
|
| 7 |
SAMPLE=$2
|
| 8 |
TIMEOUT=$3
|
| 9 |
EXEC=$4
|
| 10 |
|
| 11 |
# health checks
|
| 12 |
if [ ".$1" == "." ] || [ ".$2" == "." ]
|
| 13 |
then
|
| 14 |
echo "";
|
| 15 |
echo "usage: $H <sample> <task>";
|
| 16 |
echo ""
|
| 17 |
exit 1
|
| 18 |
fi
|
| 19 |
|
| 20 |
# say what we do
|
| 21 |
echo ""
|
| 22 |
echo " ==== Kill local condor jobs matching Sample=$SAMPLE and Task=$TASK ===="
|
| 23 |
echo ""
|
| 24 |
|
| 25 |
# loop through jobs matching the requirements
|
| 26 |
export idxs=""
|
| 27 |
condor_q -format "%d " ClusterId -format "%d " ServerTime-JobStartDate -format "%s " Cmd -format "%s\n " Args | \
|
| 28 |
grep $TASK | grep $SAMPLE | \
|
| 29 |
while read line
|
| 30 |
do
|
| 31 |
echo "Line: $line"
|
| 32 |
id=`echo $line | tr -s ' ' | cut -d ' ' -f 1`
|
| 33 |
runTime=`echo $line | tr -s ' ' | cut -d ' ' -f 2`
|
| 34 |
dir=`echo $line | tr -s ' ' | cut -d ' ' -f 4`
|
| 35 |
file=`echo $line | tr -s ' ' | cut -d ' ' -f 5`
|
| 36 |
echo "$id $runTime --> $line"
|
| 37 |
if [ $runTime -gt $TIMEOUT ]
|
| 38 |
then
|
| 39 |
echo " -> removing: condor_rm $id"
|
| 40 |
if [ "$EXEC" == "exec" ]
|
| 41 |
then
|
| 42 |
condor_rm $id
|
| 43 |
echo "remove --exe $dir/$file"
|
| 44 |
fi
|
| 45 |
fi
|
| 46 |
done
|
| 47 |
echo ""
|
| 48 |
|
| 49 |
exit 0
|
