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paus |
1.1 |
#!/bin/bash
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#---------------------------------------------------------------------------------------------------
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# Remove all jobs related with a given task and sample.
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#---------------------------------------------------------------------------------------------------
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H=`basename $0`
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TASK=$1
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SAMPLE=$2
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TIMEOUT=$3
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EXEC=$4
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# health checks
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if [ ".$1" == "." ] || [ ".$2" == "." ]
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then
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echo "";
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echo "usage: $H <sample> <task>";
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echo ""
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exit 1
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fi
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# say what we do
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echo ""
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echo " ==== Kill local condor jobs matching Sample=$SAMPLE and Task=$TASK ===="
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echo ""
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# loop through jobs matching the requirements
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export idxs=""
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paus |
1.4 |
condor_q -format "%d " ClusterId -format "%d " ServerTime -format "%d " JobStartDate -format "%s " Cmd -format "%s\n " Args | \
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paus |
1.1 |
grep $TASK | grep $SAMPLE | \
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while read line
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do
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paus |
1.3 |
echo "Line: $line"
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paus |
1.1 |
id=`echo $line | tr -s ' ' | cut -d ' ' -f 1`
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runTime=`echo $line | tr -s ' ' | cut -d ' ' -f 2`
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paus |
1.4 |
tmp=`echo $line | tr -s ' ' | cut -d ' ' -f 3`
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runTime=$(( $runTime + $tmp ))
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paus |
1.2 |
dir=`echo $line | tr -s ' ' | cut -d ' ' -f 4`
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file=`echo $line | tr -s ' ' | cut -d ' ' -f 5`
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paus |
1.1 |
echo "$id $runTime --> $line"
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if [ $runTime -gt $TIMEOUT ]
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then
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echo " -> removing: condor_rm $id"
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if [ "$EXEC" == "exec" ]
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then
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condor_rm $id
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paus |
1.2 |
echo "remove --exe $dir/$file"
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paus |
1.1 |
fi
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fi
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done
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echo ""
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exit 0
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