Processing/bin/killCondorTask.sh

#!/bin/bash
#---------------------------------------------------------------------------------------------------
# Remove all jobs related with a given task and sample.
#---------------------------------------------------------------------------------------------------
H=`basename $0`
TASK=$1
SAMPLE=$2
TIMEOUT=$3
EXEC=$4

# health checks
if [ ".$1" == "." ] || [ ".$2" == "." ]
then
  echo "";
  echo "usage: $H  <sample>  <task>";
  echo ""
  exit 1
fi

# say what we do
echo ""
echo " ==== Kill local condor jobs matching Sample=$SAMPLE and Task=$TASK ===="
echo ""

# loop through jobs matching the requirements
export idxs=""
condor_q -format "%d " ClusterId -format "%d " ServerTime -format "%d " JobStartDate -format "%s " Cmd -format "%s\n " Args | \
  grep $TASK | grep $SAMPLE | \
while read line
do
  echo "Line: $line"
  id=`echo $line | tr -s ' ' | cut -d ' ' -f 1`
  runTime=`echo $line | tr -s ' ' | cut -d ' ' -f 2`
  tmp=`echo $line | tr -s ' ' | cut -d ' ' -f 3`
  runTime=$(( $runTime + $tmp ))
  dir=`echo $line | tr -s ' ' | cut -d ' ' -f 4`
  file=`echo $line | tr -s ' ' | cut -d ' ' -f 5`
  echo "$id $runTime --> $line"
  if [ $runTime -gt $TIMEOUT ]
  then
    echo " -> removing: condor_rm $id;  condor_rm -forcex $id; "
    if [ "$EXEC" == "exec" ]
    then
      condor_rm $id
      condor_rm -forcex $id
      echo "remove --exe $dir/$file"
    fi
  fi
done
echo ""

exit 0
Revision:	1.5
Committed:	Tue Feb 28 11:54:36 2012 UTC (13 years, 2 months ago) by paus
Content type:	application/x-sh
Branch:	MAIN
CVS Tags:	Mit_032, Mit_031, Mit_030, Mit_029c, Mit_029b, Mit_030_pre1, Mit_029a, Mit_029, Mit_029_pre1, Mit_028a, Mit_028, Mit_027a, Mit_027, Mit_026, Mit_025e, Mit_025d, HEAD
Changes since 1.4:	+2 -1 lines
Log Message:	Last updates.
#	User	Rev	Content
1	paus	1.1	#!/bin/bash
2			#---------------------------------------------------------------------------------------------------
3			# Remove all jobs related with a given task and sample.
4			#---------------------------------------------------------------------------------------------------
5			H=`basename $0`
6			TASK=$1
7			SAMPLE=$2
8			TIMEOUT=$3
9			EXEC=$4
10
11			# health checks
12			if [ ".$1" == "." ] \|\| [ ".$2" == "." ]
13			then
14			echo "";
15			echo "usage: $H <sample> <task>";
16			echo ""
17			exit 1
18			fi
19
20			# say what we do
21			echo ""
22			echo " ==== Kill local condor jobs matching Sample=$SAMPLE and Task=$TASK ===="
23			echo ""
24
25			# loop through jobs matching the requirements
26			export idxs=""
27	paus	1.4	condor_q -format "%d " ClusterId -format "%d " ServerTime -format "%d " JobStartDate -format "%s " Cmd -format "%s\n " Args \| \
28	paus	1.1	grep $TASK \| grep $SAMPLE \| \
29			while read line
30			do
31	paus	1.3	echo "Line: $line"
32	paus	1.1	id=`echo $line \| tr -s ' ' \| cut -d ' ' -f 1`
33			runTime=`echo $line \| tr -s ' ' \| cut -d ' ' -f 2`
34	paus	1.4	tmp=`echo $line \| tr -s ' ' \| cut -d ' ' -f 3`
35			runTime=$(( $runTime + $tmp ))
36	paus	1.2	dir=`echo $line \| tr -s ' ' \| cut -d ' ' -f 4`
37			file=`echo $line \| tr -s ' ' \| cut -d ' ' -f 5`
38	paus	1.1	echo "$id $runTime --> $line"
39			if [ $runTime -gt $TIMEOUT ]
40			then
41	paus	1.5	echo " -> removing: condor_rm $id; condor_rm -forcex $id; "
42	paus	1.1	if [ "$EXEC" == "exec" ]
43			then
44			condor_rm $id
45	paus	1.5	condor_rm -forcex $id
46	paus	1.2	echo "remove --exe $dir/$file"
47	paus	1.1	fi
48			fi
49			done
50			echo ""
51
52			exit 0