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paus |
1.2 |
#!/usr/bin/env python
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#---------------------------------------------------------------------------------------------------
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# Script to test, create and submit one complete production task
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#
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# Complete refers here to the proper preparation of the ultimate storage location (a storge element
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# with a given storage path etc.), the submission of a test job to evaluate timing and data output
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# size and finally the creation of the job configurations and the submission of the jobs to the grid
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# sites. The grid is accessed via crab tools.
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#
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# While the script is pretty complete it has become a bit long and messy. Some cleanup will
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# hopefully soon be performed.
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#
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# Author: C.Paus (July 1, 2008)
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#---------------------------------------------------------------------------------------------------
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import os,sys,getopt,re,string
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paus |
1.3 |
import task,translator
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paus |
1.2 |
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#===================================================================================================
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def searchReplace(line,mitCfg,version,mitDataset, \
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cmsDataset='X',cmsswPy='X',dbs='X',sched='X',blacklist='X',skpEvts='X'):
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# compile search and replacement sequences
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pCmsDset = re.compile('XX-CMSDATASET-XX')
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pMitDset = re.compile('XX-MITDATASET-XX')
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pCmsswPy = re.compile('XX-CMSSWPY-XX')
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pMitCfg = re.compile('XX-MITCFG-XX')
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pMitVers = re.compile('XX-MITVERSION-XX')
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pDbs = re.compile('XX-DBS-XX')
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pSched = re.compile('XX-SCHED-XX')
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pBlacklist = re.compile('XX-BLACKLIST-XX')
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pSkpEvts = re.compile('XX-SKIPEVTS-XX')
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# perform all search and replaces
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line = pCmsDset .sub(cmsDataset, line);
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line = pMitDset .sub(mitDataset, line);
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line = pCmsswPy .sub(cmsswPy, line);
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line = pMitCfg .sub(mitCfg, line);
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line = pMitVers .sub(version, line);
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line = pDbs .sub(dbs, line);
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line = pSched .sub(sched, line);
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line = pBlacklist.sub(blacklist, line);
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return line
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#===================================================================================================
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def adjustCfg(line,nevents,crabId):
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# compile search and replacement sequences
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pNevents = re.compile('XX-NEVENTS-XX')
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pCrabId = re.compile('XX-CRABID-XX')
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# perform all search and replaces
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line = pNevents .sub(str(nevents),line);
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line = pCrabId .sub(crabId, line);
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return line
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#===================================================================================================
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def findStoragePath(mitCfg,version,mitDataset):
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# find the forseen storage place
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paus |
1.4 |
cmd = 'grep ^storage_path ' + os.environ['MIT_PROD_DIR'] \
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+ '/' + mitCfg + '/' + version + '/crab.cfg'
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paus |
1.2 |
for file in os.popen(cmd).readlines():
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line = file[:-1]
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line = searchReplace(line,mitCfg,version,mitDataset);
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# decode the storage directory name
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names = line.split("=")
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names = names[1:]
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storagePath = "=".join(names)
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storagePath = re.sub("\s", "",storagePath)
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paus |
1.4 |
cmd = 'grep ^user_remote_dir ' + os.environ['MIT_PROD_DIR'] \
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+ '/' + mitCfg + '/' + version + '/crab.cfg'
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paus |
1.2 |
for file in os.popen(cmd).readlines():
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line = file[:-1]
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line = searchReplace(line,mitCfg,version,mitDataset);
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# decode the storage directory name
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names = line.split(" ")
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storagePath += names[-1]
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return storagePath
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#===================================================================================================
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def createDirCern(storagePath):
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# check whether path exists
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cmd = 'rfdir ' + storagePath + ' >& /dev/null'
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status = os.system(cmd)
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# create it if missing
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if status == 0:
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print ' Castor directory exists: ' + storagePath + '\n --> Moving on.'
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else:
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print ' Castor directory needs to be created.'
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cmd = 'rfmkdir -p ' + storagePath
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status = os.system(cmd)
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if status == 0:
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print ' --> Created: ' + storagePath
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# always set the permissions
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cmd = 'rfchmod 777 ' + storagePath
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status = os.system(cmd)
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if status == 0:
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print ' --> Set permissions: 777\n'
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else:
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print ' --> Setting permissions failed. EXIT now.\n'
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sys.exit(1)
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#===================================================================================================
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paus |
1.5 |
def create(path):
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status = -1
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if re.search('/pnfs/cmsaf.mit.edu/t2bat',path):
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f = path.split('=')
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path = f[-1]
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#f = path.split('/')
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#path1 = "/".join(f[:-1])
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#cmd = 'ssh paus@cgate mkdir -p ' + path1
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cmd = 'ssh paus@cgate mkdir -p ' + path
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status = os.system(cmd)
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cmd = 'ssh paus@cgate chmod 777 ' + path
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status = os.system(cmd)
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return status
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#===================================================================================================
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paus |
1.2 |
def createDirGeneral(storageEle,storagePath):
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# create all relevant subdirectories
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f = storagePath.split('/') # splitting every '/'
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storagePath2 = "/".join(f[:-1])
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storagePath1 = "/".join(f[:-2])
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storagePath0 = "/".join(f[:-3])
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paus |
1.5 |
if create(storagePath) == 0:
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print ' '
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print ' Directory was created at MIT.\n'
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return
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paus |
1.2 |
# set the storage URL
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storageUrl = 'srm://' + storageEle + ':8443' + storagePath
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# check whether path exists
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cmd = 'srmls ' + storageUrl + ' >& /dev/null'
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status = os.system(cmd)
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# create it only if missing
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if status == 0:
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print ' '
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print ' Directory already found.... moving on.'
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else:
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# create all relevant directories
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cmd = 'srmmkdir srm://' + storageEle + ':8443' + storagePath0 + ' >& /dev/null'
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print ' srmmkdir: ' + cmd
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status = os.system(cmd)
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print ' srmmkdir: status %d'%(status)
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cmd = 'srmmkdir srm://' + storageEle + ':8443' + storagePath1 + ' >& /dev/null'
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print ' srmmkdir: ' + cmd
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status = os.system(cmd)
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print ' srmmkdir: status %d'%(status)
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cmd = 'srmmkdir srm://' + storageEle + ':8443' + storagePath2 + ' >& /dev/null'
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print ' srmmkdir: ' + cmd
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status = os.system(cmd)
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print ' srmmkdir: status %d'%(status)
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# create the main storage directory
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cmd = 'srmmkdir srm://' + storageEle + ':8443' + storagePath + ' >& /dev/null'
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print ' srmmkdir: ' + cmd
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status = os.system(cmd)
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print ' srmmkdir: status %d'%(status)
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if status == 0:
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print ' '
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print ' Directory was created.'
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else:
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print ' '
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print ' '
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print ' '
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print ' ERROR - failed to create the Storage Area.'
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print ' '
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print ' '
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print ' Check permissions with: srmls -l -count=1 ' + storageUrl + '\n'
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cmd = 'srmls -l -count=1 ' + storageUrl + ' | grep GroupPermission | grep RWX'
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status = -1
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for line in os.popen(cmd).readlines(): # run command
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line = line[:-1]
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print " Permissions? " + line
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status = 0
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#status = os.system(cmd)
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print ' '
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if status != 0:
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print ' --> Directory creation or permissions failed. EXIT now.\n'
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sys.exit(1)
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#===================================================================================================
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# Main starts here
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#===================================================================================================
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# Define string to explain usage of the script
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usage = "Usage: submit.py --cmsDataset=<name> | --mitDataset=<name>\n"
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usage += " --cmssw=<name>\n"
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usage += " --mitCfg=<name>\n"
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usage += " --version=<version>\n"
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usage += " --dbs=<name>\n"
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usage += " --sched=<name>\n"
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usage += " --blacklist=<name>\n"
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usage += " --nSubmit=<submittedJobs>\n"
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usage += " --skipEvents=<'nRunX:nEventY','nRunXX:nEventYY',...>\n"
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usage += " --complete\n"
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usage += " --testJob\n"
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usage += " --noTestJob\n"
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usage += " --help\n"
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# Define the valid options which can be specified and check out the command line
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valid = ['cmsDataset=','mitDataset=','cmssw=','mitCfg=','version=','dbs=','sched=','blacklist=',
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'nSubmit=','skipEvents=','complete','testJob','noTestJob','test','help']
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try:
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opts, args = getopt.getopt(sys.argv[1:], "", valid)
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except getopt.GetoptError, ex:
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print usage
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print str(ex)
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sys.exit(1)
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# --------------------------------------------------------------------------------------------------
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# Get all parameters for the production
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# --------------------------------------------------------------------------------------------------
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# Set defaults for each option
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cmsDataset = None
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mitDataset = None
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cmd = "date +crab_0_%y%m%d_%H%M%S"
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for line in os.popen(cmd).readlines(): # run command
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line = line[:-1]
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crabId = line
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| 223 |
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print "\n This job will be CrabId: " + crabId + "\n"
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| 224 |
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| 225 |
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cmssw = "cmssw"
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| 226 |
paus |
1.3 |
mitCfg = "filefi"
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| 227 |
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version = "014"
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| 228 |
paus |
1.2 |
#dbs = "https://cmsdbsprod.cern.ch:8443/cms_dbs_prod_global/servlet/DBSServlet"
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| 229 |
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dbs = "http://cmsdbsprod.cern.ch/cms_dbs_prod_global/servlet/DBSServlet"
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| 230 |
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sched = "glite"
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| 231 |
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blacklist = ""
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nSubmit = -1
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| 233 |
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skpEvts = ''
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| 234 |
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complete = 0
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noTestJob = 0
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testJob = 0
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test = 0
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| 238 |
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| 239 |
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# Read new values from the command line
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| 240 |
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for opt, arg in opts:
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| 241 |
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if opt == "--help":
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| 242 |
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print usage
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| 243 |
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sys.exit(0)
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| 244 |
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if opt == "--cmsDataset":
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| 245 |
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cmsDataset = arg
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| 246 |
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if opt == "--mitDataset":
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| 247 |
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mitDataset = arg
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| 248 |
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if opt == "--cmssw":
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| 249 |
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cmssw = arg
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| 250 |
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if opt == "--mitCfg":
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| 251 |
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mitCfg = arg
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| 252 |
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if opt == "--version":
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| 253 |
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version = arg
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| 254 |
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if opt == "--dbs":
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| 255 |
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dbs = arg
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| 256 |
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if opt == "--sched":
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| 257 |
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sched = arg
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| 258 |
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if opt == "--blacklist":
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| 259 |
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blacklist = arg
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| 260 |
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if opt == "--nSubmit":
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| 261 |
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nSubmit = arg
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| 262 |
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if opt == "--skipEvents":
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| 263 |
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skpEvts = arg
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| 264 |
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if opt == "--complete":
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| 265 |
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complete = 1
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| 266 |
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if opt == "--noTestJob":
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| 267 |
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noTestJob = 1
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| 268 |
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testJob = 0
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| 269 |
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if opt == "--testJob":
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| 270 |
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testJob = 1
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| 271 |
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noTestJob = 0
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| 272 |
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if opt == "--test":
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| 273 |
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test = 1
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| 274 |
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| 275 |
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# Make sure we have the right 'database' and the right config file
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| 276 |
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database = 'Productions'
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| 277 |
paus |
1.3 |
cmsswPy = cmssw + '_' + crabId + '.py'
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| 278 |
paus |
1.2 |
if cmssw != 'cmssw':
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| 279 |
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database += '.' + cmssw
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| 280 |
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| 281 |
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# Deal with obvious problems
|
| 282 |
|
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if cmsDataset == None and mitDataset == None:
|
| 283 |
|
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cmd = "--cmsDataset | --mitDataset options not provided. One of them is required."
|
| 284 |
|
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raise RuntimeError, cmd
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| 285 |
|
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|
| 286 |
paus |
1.3 |
crabFile = os.environ['MIT_PROD_DIR'] + '/' + mitCfg + '/' + version + '/' + 'crab.cfg'
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| 287 |
paus |
1.2 |
if not os.path.exists(crabFile):
|
| 288 |
|
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cmd = "Crab file not found: %s" % crabFile
|
| 289 |
|
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raise RuntimeError, cmd
|
| 290 |
paus |
1.3 |
cmsswFile = os.environ['MIT_PROD_DIR'] + '/' + mitCfg + '/' + version + '/' + cmssw + '.py'
|
| 291 |
paus |
1.2 |
if not os.path.exists(cmsswFile):
|
| 292 |
|
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cmd = "Cmssw file not found: %s" % cmsswFile
|
| 293 |
|
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cmd = " XXXX ERROR no valid configuration found XXXX"
|
| 294 |
|
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raise RuntimeError, cmd
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| 295 |
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|
| 296 |
paus |
1.3 |
|
| 297 |
|
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# Prepare the ce/se translator
|
| 298 |
|
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translator = translator.Translator(os.environ['MIT_PROD_DIR']+'/'+mitCfg+'/'+version+'/ceTable',
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| 299 |
|
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os.environ['MIT_PROD_DIR']+'/'+mitCfg+'/'+version+'/seTable')
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| 300 |
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| 301 |
paus |
1.2 |
# Resolve the other mitCfg parameters from the configuration file
|
| 302 |
paus |
1.3 |
cmd = 'cat ' + os.environ['MIT_PROD_DIR'] + '/' + mitCfg + '/' + version + '/' + database
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| 303 |
paus |
1.2 |
|
| 304 |
|
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join = 0
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| 305 |
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fullLine = ""
|
| 306 |
|
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bSlash = "\\";
|
| 307 |
|
|
for line in os.popen(cmd).readlines(): # run command
|
| 308 |
|
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line = line[:-1]
|
| 309 |
|
|
# get ride of empty or commented lines
|
| 310 |
|
|
if line == '' or line[0] == '#':
|
| 311 |
|
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continue
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| 312 |
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|
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| 313 |
|
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# join lines
|
| 314 |
|
|
if join == 1:
|
| 315 |
|
|
fullLine += line
|
| 316 |
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else:
|
| 317 |
|
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fullLine = line
|
| 318 |
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|
| 319 |
|
|
# determine if finished or more is coming
|
| 320 |
|
|
if fullLine[-1] == bSlash:
|
| 321 |
|
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join = 1
|
| 322 |
|
|
fullLine = fullLine[:-1]
|
| 323 |
|
|
else:
|
| 324 |
|
|
join = 0
|
| 325 |
|
|
# test whether there is a directory
|
| 326 |
|
|
names = fullLine.split() # splitting every blank
|
| 327 |
|
|
if names[0] == cmsDataset or names[1] == mitDataset:
|
| 328 |
|
|
cmsDataset = names[0] # CMS name of the dataset
|
| 329 |
|
|
mitDataset = names[1] # equivalent MIT name of the dataset
|
| 330 |
|
|
nevents = int(names[2]) # number of events to be used in the production
|
| 331 |
|
|
if names[4] != "-":
|
| 332 |
|
|
localPath = names[4]
|
| 333 |
|
|
print "\n Sample info from database %s for CMSSW config %s\n %s"\
|
| 334 |
|
|
%(database,cmsswPy,fullLine)
|
| 335 |
|
|
if len(names) == 6:
|
| 336 |
|
|
dbs = names[5]
|
| 337 |
|
|
dbs = 'https://cmsdbsprod.cern.ch:8443/cms_dbs_' + dbs + '/servlet/DBSServlet'
|
| 338 |
|
|
print ' dbs: ' + dbs + '\n'
|
| 339 |
|
|
else:
|
| 340 |
|
|
print ''
|
| 341 |
|
|
|
| 342 |
|
|
if mitDataset == None or cmsDataset == None:
|
| 343 |
|
|
print "ERROR - dataset not defined."
|
| 344 |
|
|
sys.exit(1)
|
| 345 |
|
|
|
| 346 |
|
|
# Prepare file based processing input
|
| 347 |
paus |
1.3 |
runFile = os.environ['MIT_PROD_DIR'] + '/' + mitCfg + '/' + version + '/' + 'run.sh'
|
| 348 |
paus |
1.2 |
if not os.path.exists(runFile):
|
| 349 |
|
|
cmd = "Run file not found: %s" % runFile
|
| 350 |
|
|
raise RuntimeError, cmd
|
| 351 |
|
|
cmd = 'cp ' + runFile + ' ./'
|
| 352 |
|
|
os.system(cmd)
|
| 353 |
paus |
1.3 |
writeCfgFile = os.environ['MIT_PROD_DIR'] + '/' + mitCfg + '/' + version + '/' + 'writeCfg.py'
|
| 354 |
|
|
cmd = 'cp ' + writeCfgFile + ' ./'
|
| 355 |
|
|
os.system(cmd)
|
| 356 |
paus |
1.2 |
|
| 357 |
|
|
lfnFile = mitCfg + '/' + version + '/' + mitDataset + '.lfns'
|
| 358 |
|
|
if os.path.exists(lfnFile):
|
| 359 |
paus |
1.5 |
print "\n INFO -- Lfn file found: %s. This means someone already worked on this dataset.\n" % lfnFile
|
| 360 |
|
|
cmd = 'rm ' + lfnFile
|
| 361 |
paus |
1.2 |
os.system(cmd)
|
| 362 |
|
|
|
| 363 |
paus |
1.5 |
# always recreate, because the relvant copy still exists and is never touched
|
| 364 |
|
|
cmd = 'input.py --option=lfn --dataset=' + cmsDataset + ' > ' + lfnFile
|
| 365 |
|
|
print ' Input: ' + cmd + '\n'
|
| 366 |
|
|
os.system(cmd)
|
| 367 |
|
|
|
| 368 |
paus |
1.2 |
# Create the corresponding crab task
|
| 369 |
|
|
crabTask = task.Task(crabId,cmsDataset,mitCfg,version)
|
| 370 |
|
|
crabTask.storagePath = findStoragePath(mitCfg,version,mitDataset)
|
| 371 |
|
|
crabTask.loadAllLfns(lfnFile)
|
| 372 |
|
|
crabTask.loadCompletedLfns()
|
| 373 |
|
|
crabTask.createMissingLfns(lfnFile,lfnFile + '_' + crabTask.tag)
|
| 374 |
paus |
1.4 |
if crabTask.nLfnMissing == 0:
|
| 375 |
|
|
print ' All requested LFNs are available. EXIT now.'
|
| 376 |
|
|
sys.exit()
|
| 377 |
|
|
|
| 378 |
paus |
1.2 |
crabTask.createSubTasks(lfnFile + '_' + crabTask.tag)
|
| 379 |
|
|
cmd = 'cp ' + lfnFile + '_' + crabTask.tag + '_*' + ' ./'
|
| 380 |
|
|
os.system(cmd)
|
| 381 |
|
|
|
| 382 |
|
|
nevents = len(crabTask.lfns)
|
| 383 |
|
|
|
| 384 |
|
|
# Say what we do now
|
| 385 |
|
|
print ' Preparing dataset: ' + cmsDataset + ' [MIT: ' + mitDataset + ' with ' + str(nevents) + \
|
| 386 |
|
|
' total jobs(=lfns), nEvtsTotal: %d]' % crabTask.nTotalEvts
|
| 387 |
|
|
|
| 388 |
|
|
# --------------------------------------------------------------------------------------------------
|
| 389 |
|
|
# Prepare the config files
|
| 390 |
|
|
# --------------------------------------------------------------------------------------------------
|
| 391 |
|
|
# Cleaning up
|
| 392 |
paus |
1.3 |
cmd = "rm -f crab_" + crabTask.tag + ".cfg crab_" + crabTask.tag + ".cfg-Template " + cmsswPy
|
| 393 |
paus |
1.2 |
os.system(cmd)
|
| 394 |
|
|
|
| 395 |
|
|
# Parse template input and write the crab configuration file
|
| 396 |
|
|
fileInput = open(crabFile,'r')
|
| 397 |
paus |
1.3 |
fileOutput = open("crab_" + crabTask.tag + ".cfg-Template",'w')
|
| 398 |
paus |
1.2 |
line = fileInput.readline()
|
| 399 |
|
|
while (line != ''):
|
| 400 |
|
|
if line[0] != '#':
|
| 401 |
|
|
line = searchReplace(line,mitCfg,version,mitDataset, \
|
| 402 |
|
|
cmsDataset,cmsswPy,dbs,sched,blacklist,skpEvts)
|
| 403 |
|
|
fileOutput.write(line)
|
| 404 |
|
|
line = fileInput.readline()
|
| 405 |
|
|
fileInput .close()
|
| 406 |
|
|
fileOutput.close()
|
| 407 |
|
|
|
| 408 |
|
|
# Parse template input and write the crab configuration file
|
| 409 |
|
|
fileInput = open(cmsswFile,'r')
|
| 410 |
|
|
fileOutput = open(cmsswPy,'w')
|
| 411 |
|
|
line = fileInput.readline()
|
| 412 |
|
|
while (line != ''):
|
| 413 |
|
|
if line[0] != '#':
|
| 414 |
|
|
line = searchReplace(line,mitCfg,version,mitDataset, \
|
| 415 |
|
|
cmsDataset,cmsswPy,dbs,sched,blacklist,skpEvts)
|
| 416 |
|
|
fileOutput.write(line)
|
| 417 |
|
|
line = fileInput.readline()
|
| 418 |
|
|
fileInput .close()
|
| 419 |
|
|
fileOutput.close()
|
| 420 |
|
|
|
| 421 |
|
|
# --------------------------------------------------------------------------------------------------
|
| 422 |
|
|
# Job creation and submission
|
| 423 |
|
|
# --------------------------------------------------------------------------------------------------
|
| 424 |
|
|
print '\n Using CMSSW version: ' + os.environ['CMSSW_VERSION']
|
| 425 |
|
|
print ' Using CRAB version: ' + os.environ['CRAB_VERS'] + '\n'
|
| 426 |
|
|
|
| 427 |
|
|
pattern1 = 'working directory'
|
| 428 |
paus |
1.5 |
pattern2 = 'Total of '
|
| 429 |
paus |
1.2 |
|
| 430 |
|
|
# Go through the crabTask and submit each subtask to the grid
|
| 431 |
|
|
for subTask in crabTask.subTasks:
|
| 432 |
|
|
|
| 433 |
|
|
tag = crabTask.tag + '_' + subTask.tag()
|
| 434 |
|
|
print ' Working on subtask: ' + tag
|
| 435 |
|
|
|
| 436 |
|
|
nJobsTotal = 0
|
| 437 |
|
|
crabIdCheck = ''
|
| 438 |
|
|
|
| 439 |
|
|
# adjust crab config
|
| 440 |
paus |
1.3 |
fileInput = open("crab_" + crabTask.tag + ".cfg-Template",'r')
|
| 441 |
|
|
fileOutput = open("crab_" + crabTask.tag + ".cfg",'w')
|
| 442 |
paus |
1.2 |
line = fileInput.readline()
|
| 443 |
|
|
while (line != ''):
|
| 444 |
|
|
if line[0] != '#':
|
| 445 |
|
|
line = adjustCfg(line,subTask.nSubTaskLfn,tag)
|
| 446 |
|
|
fileOutput.write(line)
|
| 447 |
|
|
line = fileInput.readline()
|
| 448 |
|
|
fileInput .close()
|
| 449 |
|
|
fileOutput.close()
|
| 450 |
|
|
|
| 451 |
|
|
# ----------------------------------------------------------------------------------------------
|
| 452 |
|
|
# Deal with storage element area
|
| 453 |
|
|
# ----------------------------------------------------------------------------------------------
|
| 454 |
|
|
# find the forseen storage place
|
| 455 |
paus |
1.3 |
cmd = 'grep ^storage_element crab_' + crabTask.tag + '.cfg-Template'
|
| 456 |
paus |
1.2 |
for file in os.popen(cmd).readlines(): # run command
|
| 457 |
|
|
line = file[:-1] # strip '\n'
|
| 458 |
|
|
# decode the storage element name
|
| 459 |
|
|
names = line.split("=") # splitting every '='
|
| 460 |
|
|
storageEle = names.pop()
|
| 461 |
|
|
storageEle = re.sub("\s", "",storageEle)
|
| 462 |
paus |
1.3 |
cmd = 'grep ^storage_path crab_' + crabTask.tag + '.cfg-Template'
|
| 463 |
paus |
1.2 |
for file in os.popen(cmd).readlines(): # run command
|
| 464 |
|
|
line = file[:-1] # strip '\n'
|
| 465 |
|
|
# decode the storage directory name
|
| 466 |
|
|
names = line.split("=") # splitting every '='
|
| 467 |
|
|
names = names[1:]
|
| 468 |
|
|
storagePath = "=".join(names)
|
| 469 |
|
|
storagePath = re.sub("\s", "",storagePath)
|
| 470 |
paus |
1.3 |
cmd = 'grep ^user_remote_dir crab_' + crabTask.tag + '.cfg-Template'
|
| 471 |
paus |
1.2 |
for file in os.popen(cmd).readlines(): # run command
|
| 472 |
|
|
line = file[:-1] # strip '\n'
|
| 473 |
|
|
# decode the storage directory name
|
| 474 |
|
|
names = line.split(" ") # splitting every '='
|
| 475 |
|
|
storagePath += names[-1]
|
| 476 |
|
|
storageUrl = 'srm://' + storageEle + ':8443' + storagePath
|
| 477 |
|
|
|
| 478 |
|
|
storagePath = adjustCfg(storagePath,subTask.nSubTaskLfn,tag)
|
| 479 |
|
|
storageUrl = adjustCfg(storageUrl, subTask.nSubTaskLfn,tag)
|
| 480 |
|
|
|
| 481 |
|
|
print ' StorageUrl: ' + storageUrl
|
| 482 |
|
|
|
| 483 |
|
|
# Create storage area
|
| 484 |
|
|
if test == 0: # for testing we do not create the directories
|
| 485 |
|
|
if (storageEle == 'srm.cern.ch'):
|
| 486 |
|
|
createDirCern(storagePath)
|
| 487 |
|
|
else:
|
| 488 |
|
|
createDirGeneral(storageEle,storagePath)
|
| 489 |
|
|
|
| 490 |
|
|
# cmd = "crab -create -debug 3 -USER.ui_working_dir=" + tag + " | tee forDaniele "
|
| 491 |
paus |
1.3 |
cmd = "crab -create -cfg crab_" + crabTask.tag + ".cfg -USER.ui_working_dir=" + tag
|
| 492 |
paus |
1.2 |
print ' -> ' + cmd
|
| 493 |
|
|
if test != 0:
|
| 494 |
|
|
cmd = 'echo ' + cmd
|
| 495 |
|
|
print ' ' + cmd
|
| 496 |
|
|
for line in os.popen(cmd).readlines(): # run command
|
| 497 |
|
|
line = line[:-1] # strip '\n'
|
| 498 |
|
|
print ' CRAB: ' + line
|
| 499 |
|
|
if re.search(pattern1,line):
|
| 500 |
|
|
f = line.split("/")
|
| 501 |
|
|
crabIdCheck = f[-2]
|
| 502 |
|
|
if re.search(pattern2,line):
|
| 503 |
|
|
f = line.split(" ")
|
| 504 |
paus |
1.5 |
nJobsTotal = f[4]
|
| 505 |
paus |
1.2 |
if nJobsTotal == '':
|
| 506 |
|
|
nJobsTotal = f[2]
|
| 507 |
paus |
1.3 |
# report
|
| 508 |
paus |
1.2 |
print ' --> %s jobs created (%s).\n'%(nJobsTotal,tag)
|
| 509 |
paus |
1.3 |
# and cleanup the temporary file for the subtask
|
| 510 |
|
|
cmd = "rm -f " + mitDataset + ".lfns_" + tag
|
| 511 |
|
|
os.system(cmd)
|
| 512 |
|
|
|
| 513 |
paus |
1.2 |
# adjust arguments
|
| 514 |
|
|
cmd = 'input.py --db=' + lfnFile + '_' + tag + ' --option=xml --dataset=' + cmsDataset + \
|
| 515 |
|
|
' > ' + tag + '/share/arguments.xml'
|
| 516 |
|
|
print ' update arguments: ' + cmd
|
| 517 |
|
|
if test == 0:
|
| 518 |
|
|
os.system(cmd)
|
| 519 |
|
|
|
| 520 |
|
|
# loop through the file and determine the submission parameters
|
| 521 |
|
|
block = ''
|
| 522 |
|
|
blocks = []
|
| 523 |
|
|
idx = 0
|
| 524 |
|
|
minIdxs = []
|
| 525 |
|
|
maxIdxs = []
|
| 526 |
|
|
|
| 527 |
|
|
fileInput = open(lfnFile + '_' + tag,'r')
|
| 528 |
|
|
line = fileInput.readline()
|
| 529 |
|
|
while (line != ''):
|
| 530 |
|
|
line = line[:-1]
|
| 531 |
|
|
if line[0] != '#':
|
| 532 |
|
|
idx += 1
|
| 533 |
|
|
f = line.split()
|
| 534 |
|
|
block = f[0]
|
| 535 |
|
|
lfn = f[1]
|
| 536 |
|
|
nEvents = f[2]
|
| 537 |
|
|
if len(blocks) == 0 or block != blocks[-1]:
|
| 538 |
|
|
# new block found
|
| 539 |
|
|
blocks .append(block)
|
| 540 |
|
|
minIdxs.append(idx)
|
| 541 |
|
|
maxIdxs.append(idx)
|
| 542 |
|
|
else:
|
| 543 |
|
|
maxIdxs[-1] = idx
|
| 544 |
|
|
# keep the reading going
|
| 545 |
|
|
line = fileInput.readline()
|
| 546 |
|
|
fileInput .close()
|
| 547 |
|
|
|
| 548 |
|
|
# merge blocks together if they use the same sites
|
| 549 |
|
|
lastSites = ''
|
| 550 |
|
|
idx = 0
|
| 551 |
|
|
mergedIdx = 0
|
| 552 |
|
|
mergedBlocks = []
|
| 553 |
|
|
mergedSites = []
|
| 554 |
|
|
mergedMinIdxs = []
|
| 555 |
|
|
mergedMaxIdxs = []
|
| 556 |
|
|
print '\n Show the unmerged blocks:'
|
| 557 |
|
|
for block in blocks:
|
| 558 |
|
|
cmd = "sites.py --block=" + block
|
| 559 |
|
|
for line in os.popen(cmd).readlines(): # run command
|
| 560 |
|
|
line = line[:-1]
|
| 561 |
|
|
sites = line
|
| 562 |
paus |
1.5 |
|
| 563 |
|
|
sites = translator.translateSes(sites)
|
| 564 |
|
|
sites = translator.selectPreferred()
|
| 565 |
|
|
|
| 566 |
paus |
1.2 |
print ' Block ' + block + ' process: %d to %d'%(minIdxs[idx],maxIdxs[idx]) + \
|
| 567 |
|
|
' at\n > ' + sites
|
| 568 |
|
|
# block with different sites found
|
| 569 |
|
|
if sites != lastSites:
|
| 570 |
|
|
mergedSites .append(sites)
|
| 571 |
paus |
1.6 |
mergedBlocks .append(blocks [idx]) # only the first block with these sites is stored
|
| 572 |
paus |
1.2 |
mergedMinIdxs.append(minIdxs[idx])
|
| 573 |
|
|
mergedMaxIdxs.append(maxIdxs[idx])
|
| 574 |
paus |
1.6 |
lastSites = sites
|
| 575 |
|
|
mergedIdx += 1
|
| 576 |
paus |
1.2 |
else:
|
| 577 |
|
|
mergedMaxIdxs[mergedIdx-1] = maxIdxs[idx]
|
| 578 |
paus |
1.6 |
|
| 579 |
paus |
1.2 |
# last action in the loop: increment the unmerged blocks
|
| 580 |
|
|
idx += 1
|
| 581 |
|
|
|
| 582 |
|
|
# Show already what we will do
|
| 583 |
|
|
idx = 0
|
| 584 |
|
|
print '\n Show the merged blocks:'
|
| 585 |
|
|
for block in mergedBlocks:
|
| 586 |
|
|
print ' Merged Block ' + block + ' process: %d to %d'\
|
| 587 |
|
|
%(mergedMinIdxs[idx],mergedMaxIdxs[idx]) + \
|
| 588 |
|
|
' at\n > ' + mergedSites[idx]
|
| 589 |
|
|
# last action in the loop: increment the merged blocks
|
| 590 |
|
|
idx += 1
|
| 591 |
|
|
|
| 592 |
|
|
# perfrom the submission block by block (using the merged blocks of course)
|
| 593 |
|
|
nSubmission = len(mergedBlocks)
|
| 594 |
|
|
idx = 0
|
| 595 |
|
|
print '\n Submit the merged blocks:'
|
| 596 |
|
|
for block in mergedBlocks:
|
| 597 |
|
|
print ' Merged Block ' + block + ' process: %d to %d'\
|
| 598 |
|
|
%(mergedMinIdxs[idx],mergedMaxIdxs[idx]) + \
|
| 599 |
|
|
' at\n > ' + mergedSites[idx]
|
| 600 |
|
|
|
| 601 |
|
|
nSubmit = '%d-%d'%(mergedMinIdxs[idx],mergedMaxIdxs[idx])
|
| 602 |
|
|
if mergedMinIdxs[idx] == mergedMaxIdxs[idx]:
|
| 603 |
|
|
nSubmit = '%d,%d'%(mergedMinIdxs[idx],100000000)
|
| 604 |
paus |
1.5 |
cmd = 'crab -submit %s -continue %s -GRID.ce_white_list=%s'%(nSubmit,tag,mergedSites[idx])
|
| 605 |
|
|
print ' ' + cmd + '\n'
|
| 606 |
paus |
1.3 |
status = os.system(cmd)
|
| 607 |
|
|
while status != 0:
|
| 608 |
|
|
print ' Submission failed (%s) --> retry'%(cmd)
|
| 609 |
|
|
status = os.system(cmd)
|
| 610 |
|
|
|
| 611 |
paus |
1.2 |
# last action in the loop: increment the merged blocks
|
| 612 |
|
|
idx += 1
|
| 613 |
|
|
|
| 614 |
|
|
print ' Number of blocks submitted: %d' % nSubmission
|
| 615 |
|
|
|
| 616 |
paus |
1.3 |
# and cleanup the temporary file for the task
|
| 617 |
|
|
cmd = "rm -f crab_" + crabTask.tag + ".cfg crab_" + crabTask.tag + ".cfg-Template " \
|
| 618 |
paus |
1.5 |
+ cmsswPy + ' ' + cmsswPy + 'c' + ' writeCfg.py run.sh'
|
| 619 |
paus |
1.3 |
os.system(cmd)
|
| 620 |
|
|
|
| 621 |
paus |
1.2 |
print ' Done... keep watching it...'
|
| 622 |
|
|
sys.exit(0)
|
| 623 |
|
|
|
| 624 |
|
|
|
| 625 |
|
|
## if nSubmit != -1:
|
| 626 |
|
|
## cmd = 'crab -continue %s -submit %s'%(crabId,nSubmit)
|
| 627 |
|
|
## print 'SUBMIT.PY: ' + cmd
|
| 628 |
|
|
## status = os.system(cmd)
|
| 629 |
|
|
## if status == 0:
|
| 630 |
|
|
## print ' --> job submitted\n'
|
| 631 |
|
|
## else:
|
| 632 |
|
|
## leftOver = int(nJobsTotal)
|
| 633 |
|
|
## nSubmitted = 0
|
| 634 |
|
|
## nSubBatch = 80
|
| 635 |
|
|
## while (nSubmitted < int(nJobsTotal)):
|
| 636 |
|
|
## if leftOver < nSubBatch:
|
| 637 |
|
|
## nSubBatch = leftOver
|
| 638 |
|
|
##
|
| 639 |
|
|
## cmd = 'crab -continue %s -submit %d'%(crabId,nSubBatch)
|
| 640 |
|
|
## print 'SUBMIT.PY: ' + cmd
|
| 641 |
|
|
## status = os.system(cmd)
|
| 642 |
|
|
## if status == 0:
|
| 643 |
|
|
## print ' --> %d job submitted\n'%(nSubBatch)
|
| 644 |
|
|
## leftOver = leftOver - nSubBatch
|
| 645 |
|
|
## nSubmitted = nSubmitted + nSubBatch
|
| 646 |
|
|
##
|
| 647 |
|
|
## #print 'SUBMIT.PY: ' + cmd
|
| 648 |
|
|
## #status = os.system(cmd)
|
| 649 |
|
|
## #if status == 0:
|
| 650 |
|
|
## # print ' --> job submitted\n'
|
| 651 |
|
|
##
|
| 652 |
|
|
|
| 653 |
|
|
# --------------------------------------------------------------------------------------------------
|
| 654 |
|
|
# Run a test job to test the configuration and measure the expected output size
|
| 655 |
|
|
# --------------------------------------------------------------------------------------------------
|
| 656 |
|
|
if noTestJob == 0:
|
| 657 |
|
|
#-----------------------------------------------------------------------------------------------
|
| 658 |
|
|
# use a specific file for test
|
| 659 |
|
|
#-----------------------------------------------------------------------------------------------
|
| 660 |
|
|
# first check whether we already have a local file
|
| 661 |
|
|
print '\n Try to find an existing local file using "find"'
|
| 662 |
|
|
f = cmsDataset.split("/")
|
| 663 |
|
|
name = f[1]
|
| 664 |
|
|
vers = f[2]
|
| 665 |
|
|
tier = f[3]
|
| 666 |
|
|
file = ""
|
| 667 |
|
|
lfn = ""
|
| 668 |
|
|
cmd = 'find ./store/ -name ' + name
|
| 669 |
|
|
print 'Searching: ' + cmd
|
| 670 |
|
|
for line in os.popen(cmd).readlines(): # run command
|
| 671 |
|
|
file = line[:-1] # strip '\n'
|
| 672 |
|
|
|
| 673 |
|
|
# looks like there could be a file we found a directory, confirm
|
| 674 |
|
|
if file != "":
|
| 675 |
|
|
print '\n We have a directory ' + file + ' .. confirming'
|
| 676 |
|
|
file = file + '/' + tier
|
| 677 |
|
|
cmd = 'find ' + file + ' -name \*.root'
|
| 678 |
|
|
for line in os.popen(cmd).readlines(): # run command
|
| 679 |
|
|
if line.find(vers):
|
| 680 |
|
|
file = line[:-1] # strip '\n'
|
| 681 |
|
|
lfn = file[1:]
|
| 682 |
|
|
|
| 683 |
|
|
if os.path.exists(file):
|
| 684 |
|
|
print ' moving on with locally found file: \n' + ' ' + file
|
| 685 |
|
|
else:
|
| 686 |
|
|
print ' no local file found'
|
| 687 |
|
|
file = ""
|
| 688 |
|
|
lfn = ""
|
| 689 |
|
|
|
| 690 |
|
|
# now try to see whether we can find a file to download
|
| 691 |
|
|
if file == "":
|
| 692 |
|
|
cmd = './bin/findLfn.py --input=' + cmsDataset + ' | grep /store/'
|
| 693 |
|
|
print '\n Find an LFN to download: ' + cmd
|
| 694 |
|
|
for line in os.popen(cmd).readlines(): # run command
|
| 695 |
|
|
if line.find("/store") != -1:
|
| 696 |
|
|
lfn = line[:-1] # strip '\n'
|
| 697 |
|
|
break
|
| 698 |
|
|
if lfn == "":
|
| 699 |
|
|
print "\n WARNING: No file found, continue assuming it is a simulation job.\n\n"
|
| 700 |
|
|
else:
|
| 701 |
|
|
print ' --> LFN: ' + lfn
|
| 702 |
|
|
file = '.' + lfn
|
| 703 |
|
|
|
| 704 |
|
|
if os.path.exists(file):
|
| 705 |
|
|
print ' --> File already exists: ' + file
|
| 706 |
|
|
else:
|
| 707 |
|
|
cmd = './bin/downloadLfn.py ' + lfn
|
| 708 |
|
|
print ' --> downloading: ' + cmd
|
| 709 |
|
|
status = os.system(cmd)
|
| 710 |
|
|
if status != 0:
|
| 711 |
|
|
print ' ERROR - failed to copy LFN. EXIT now!'
|
| 712 |
|
|
sys.exit(1)
|
| 713 |
|
|
|
| 714 |
|
|
# Parse template input and adjust the input file to the newly copied lfn
|
| 715 |
|
|
fileInput = open(cmsswPy,'r')
|
| 716 |
|
|
fileOutput = open("test-"+cmsswPy,'w')
|
| 717 |
|
|
line = fileInput.readline()
|
| 718 |
|
|
while (line != ''):
|
| 719 |
|
|
if line.find("file:") != -1:
|
| 720 |
|
|
line = '"file:' + lfn[1:] + '"\n'
|
| 721 |
|
|
fileOutput.write(line)
|
| 722 |
|
|
line = fileInput.readline()
|
| 723 |
|
|
fileInput .close()
|
| 724 |
|
|
fileOutput.close()
|
| 725 |
|
|
|
| 726 |
|
|
# Setting the number of events (hard coded in the file so far)
|
| 727 |
|
|
nTryEvts = 1000.
|
| 728 |
|
|
|
| 729 |
|
|
print '\n --> Please wait, running a test job now! Should be short (trying %.0f'%nTryEvts + \
|
| 730 |
|
|
' evts). Check log: cmssw.log'
|
| 731 |
|
|
cmd = 'rm -f cmssw.log; /usr/bin/time --format "%e %U %S" cmsRun test-' + cmsswPy + \
|
| 732 |
|
|
' >& cmssw.log'
|
| 733 |
|
|
print ' CMD: ' + cmd
|
| 734 |
|
|
status = os.system(cmd)
|
| 735 |
|
|
|
| 736 |
|
|
cmd = 'tail -1 cmssw.log'
|
| 737 |
|
|
for file in os.popen(cmd).readlines(): # run command
|
| 738 |
|
|
line = file[:-1] # strip '\n'
|
| 739 |
|
|
f = line.split() # splitting every blank
|
| 740 |
|
|
rtime = float(f[0]) # wall clock time
|
| 741 |
|
|
utime = float(f[1]) # user time
|
| 742 |
|
|
stime = float(f[2]) # system time
|
| 743 |
|
|
|
| 744 |
|
|
nEvtsTest = 1000
|
| 745 |
|
|
cmd = 'grep \'Begin processing\' cmssw.log | tail -1'
|
| 746 |
|
|
for file in os.popen(cmd).readlines(): # run command
|
| 747 |
|
|
line = file[:-1] # strip '\n'
|
| 748 |
|
|
# test whether there is a directory
|
| 749 |
|
|
f = line.split() # splitting every blank
|
| 750 |
|
|
nEvtsTest = f[3] # this is the number of records processed
|
| 751 |
|
|
nEvtsTest = int(nEvtsTest[:-2]) # strip 'th'
|
| 752 |
|
|
cmd = 'ls -s ' + mitDataset + '*.root'
|
| 753 |
|
|
size = 0
|
| 754 |
|
|
for file in os.popen(cmd).readlines(): # run command
|
| 755 |
|
|
line = file[:-1] # strip '\n'
|
| 756 |
|
|
f = line.split() # splitting every blank
|
| 757 |
|
|
size += int(f[0])/1000. # size in MB
|
| 758 |
|
|
|
| 759 |
|
|
cmd = 'tail -1 cmssw.log'
|
| 760 |
|
|
for file in os.popen(cmd).readlines(): # run command
|
| 761 |
|
|
line = file[:-1] # strip '\n'
|
| 762 |
|
|
# get total, user and system times
|
| 763 |
|
|
names = line.split() # splitting every blank
|
| 764 |
|
|
|
| 765 |
|
|
if nEvtsTest != nTryEvts:
|
| 766 |
|
|
print ' WARNING - Instead of %f did %d'%(nTryEvts,nEvtsTest)
|
| 767 |
|
|
|
| 768 |
|
|
print ' '
|
| 769 |
|
|
print ' Number of test events produced: %d'%nEvtsTest
|
| 770 |
|
|
print ' File size for all events: %.2f MB'%size
|
| 771 |
|
|
print ' Processing time for all events: %.2f secs (u: %.2f s: %.2f)'%(rtime,utime,stime)
|
| 772 |
|
|
print ' '
|
| 773 |
|
|
print ' --> 1 event == %.2f secs'%(rtime/nEvtsTest)
|
| 774 |
|
|
print ' --> 1.00 GB == %d events'%(nEvtsTest/size*1024.)
|
| 775 |
|
|
print ' --> %.2f GB == %d events'%(nevents/(nEvtsTest/size*1024.),nevents)
|
| 776 |
|
|
print ' '
|
| 777 |
|
|
|
| 778 |
|
|
if testJob == 1:
|
| 779 |
|
|
print '\n Test job finished, stopping now.\n'
|
| 780 |
|
|
sys.exit(0)
|
| 781 |
|
|
|
| 782 |
|
|
|
| 783 |
|
|
## # are we just completing an existing production? and is there something to complete?
|
| 784 |
|
|
## if complete == 1:
|
| 785 |
|
|
## f = storagePath.split('=')
|
| 786 |
|
|
## rfDir = f[-1]
|
| 787 |
|
|
## #cmd = 'castorInventory.py --nJobs=%s %s | grep Missing'%(nJobsTotal,rfDir)
|
| 788 |
|
|
## cmd = 'castorInventory.py --nJobs=%s %s | grep Missing'%(nJobsTotal,storageUrl)
|
| 789 |
|
|
## #print ' CMD: ' + cmd
|
| 790 |
|
|
## for line in os.popen(cmd).readlines(): # run command
|
| 791 |
|
|
## line = line[:-1] # strip '\n'
|
| 792 |
|
|
## f = line.split(':')
|
| 793 |
|
|
## nSubmit = f[1].strip()
|
| 794 |
|
|
## f = nSubmit.split(',')
|
| 795 |
|
|
## if len(f) == 0 or nSubmit == '':
|
| 796 |
|
|
## print ' No more jobs left it seems, nSubmit=' + nSubmit
|
| 797 |
|
|
## cmd = 'rm -rf ' + crabId
|
| 798 |
|
|
## print ' Cleanup: ' + cmd + '\n\n'
|
| 799 |
|
|
## status = os.system(cmd)
|
| 800 |
|
|
## sys.exit(0)
|
| 801 |
|
|
## elif len(f) == 1:
|
| 802 |
|
|
## nInvalid = str(int(nJobsTotal) + 1000)
|
| 803 |
|
|
## print ' One more jobs left, careful, adjusted, nSubmit=' + nSubmit
|
| 804 |
|
|
## nSubmit = nSubmit + ',' + nInvalid
|
| 805 |
|
|
##
|
| 806 |
|
|
## ### nSubmit = ",".join(f[:-1])
|
| 807 |
|
|
## print ' Missing jobs are: ' + nSubmit
|
| 808 |
|
|
##
|
| 809 |
|
|
## sys.exit(0)
|
