[ViewVC] Diff of: cvsroot/UserCode/OSUT3Analysis/AnaTools/plugins/OSUAnalysis.cc

Comparing UserCode/OSUT3Analysis/AnaTools/plugins/OSUAnalysis.cc (file contents):
Revision 1.80 by wulsin, Tue Jun 4 14:18:10 2013 UTC vs.
Revision 1.118 by wulsin, Mon Aug 5 22:00:12 2013 UTC

#	Line 1 \| Line 1
1		#include "OSUT3Analysis/AnaTools/plugins/OSUAnalysis.h"
2	–
2		OSUAnalysis::OSUAnalysis (const edm::ParameterSet &cfg) :
3		// Retrieve parameters from the configuration file.
4		jets_ (cfg.getParameter<edm::InputTag> ("jets")),
5		muons_ (cfg.getParameter<edm::InputTag> ("muons")),
6	+	secMuons_ (cfg.getParameter<edm::InputTag> ("secMuons")),
7		electrons_ (cfg.getParameter<edm::InputTag> ("electrons")),
8		events_ (cfg.getParameter<edm::InputTag> ("events")),
9		taus_ (cfg.getParameter<edm::InputTag> ("taus")),
#	Line 28 \| Line 28 \| OSUAnalysis::OSUAnalysis (const edm::Par
28		datasetType_ (cfg.getParameter<string> ("datasetType")),
29		channels_ (cfg.getParameter<vector<edm::ParameterSet> >("channels")),
30		histogramSets_ (cfg.getParameter<vector<edm::ParameterSet> >("histogramSets")),
31	+	useEDMFormat_ (cfg.getParameter<bool>("useEDMFormat")),
32		treeBranchSets_ (cfg.getParameter<vector<edm::ParameterSet> >("treeBranchSets")),
33		plotAllObjectsInPassingEvents_ (cfg.getParameter<bool> ("plotAllObjectsInPassingEvents")),
34		doPileupReweighting_ (cfg.getParameter<bool> ("doPileupReweighting")),
35		applyLeptonSF_ (cfg.getParameter<bool> ("applyLeptonSF")),
36	<	printEventInfo_ (cfg.getParameter<bool> ("printEventInfo")),
36	>	applyBtagSF_ (cfg.getParameter<bool> ("applyBtagSF")),
37	>	minBtag_ (cfg.getParameter<int> ("minBtag")),
38	>	printEventInfo_ (cfg.getParameter<bool> ("printEventInfo")),
39	>	printAllTriggers_ (cfg.getParameter<bool> ("printAllTriggers")),
40		useTrackCaloRhoCorr_ (cfg.getParameter<bool> ("useTrackCaloRhoCorr")),
41		stopCTau_ (cfg.getParameter<vector<double> > ("stopCTau")),
42	<	GetPlotsAfterEachCut_ (cfg.getParameter<bool> ("GetPlotsAfterEachCut"))
43	<	{
42	>	GetPlotsAfterEachCut_ (cfg.getParameter<bool> ("GetPlotsAfterEachCut")),
43	>	verbose_ (cfg.getParameter<int> ("verbose"))
44	>	{
45
46	<	TH1::SetDefaultSumw2 ();
46	>	if (verbose_) printEventInfo_ = true;
47	>	if (verbose_) clog << "Beginning OSUAnalysis::OSUAnalysis constructor." << endl;
48	>
49	>	TH1::SetDefaultSumw2();
50
51		//create pile-up reweighting object, if necessary
52		if(datasetType_ != "data") {
#	Line 47 \| Line 55 \| OSUAnalysis::OSUAnalysis (const edm::Par
55		muonSFWeight_ = new MuonSFWeight (muonSFFile_, muonSF_);
56		electronSFWeight_ = new ElectronSFWeight ("53X", electronSFID_);
57		}
58	+	if (applyBtagSF_){
59	+	bTagSFWeight_ = new BtagSFWeight;
60	+	}
61		}
62		if (datasetType_ == "signalMC" && regex_match (dataset_, regex ("stop.to._.mm.")))
63	<	stopCTauWeight_ = new StopCTauWeight (stopCTau_.at (0), stopCTau_.at (1), stops_);
63	>	stopCTauWeight_ = new StopCTauWeight (stopCTau_.at(0), stopCTau_.at(1), stops_);
64
65
66		// Construct Cutflow Objects. These store the results of cut decisions and
#	Line 59 \| Line 70 \| OSUAnalysis::OSUAnalysis (const edm::Par
70		//always get vertex collection so we can assign the primary vertex in the event
71		objectsToGet.push_back("primaryvertexs");
72		objectsToPlot.push_back("primaryvertexs");
73	<	objectsToCut.push_back("primaryvertexs");
73	>	objectsToFlag.push_back("primaryvertexs");
74
75
76		//always get the MC particles to do GEN-matching
#	Line 69 \| Line 80 \| OSUAnalysis::OSUAnalysis (const edm::Par
80		objectsToGet.push_back("events");
81
82
83	<	// Parse the tree variable definitions.
84	<	for (uint iBranchSet = 0; iBranchSet<treeBranchSets_.size(); iBranchSet++) {
83	>	// Parse the tree variable definitions.
84	>	for (uint iBranchSet = 0; !useEDMFormat_ && iBranchSet<treeBranchSets_.size(); iBranchSet++) {
85		string tempInputCollection = treeBranchSets_.at(iBranchSet).getParameter<string> ("inputCollection");
86	<	if(tempInputCollection.find("pairs")!=string::npos) { cout << "Warning: tree filling is not configured for pairs of objects, so will not work for collection: " << tempInputCollection << endl; }
86	>	if(tempInputCollection.find("pairs")!=string::npos) { clog << "Warning: tree filling is not configured for pairs of objects, so will not work for collection: " << tempInputCollection << endl; }
87		objectsToGet.push_back(tempInputCollection);
88	<	objectsToCut.push_back(tempInputCollection);
88	>	objectsToFlag.push_back(tempInputCollection);
89
90		vector<string> branchList(treeBranchSets_.at(iBranchSet).getParameter<vector<string> >("branches"));
91
92		for (uint iBranch = 0; iBranch<branchList.size(); iBranch++) {
93		BranchSpecs br;
94		br.inputCollection = tempInputCollection;
95	<	br.inputVariable = branchList.at(iBranch);
96	<	TString newName = TString(br.inputCollection) + "_" + TString(br.inputVariable);
97	<	br.name = string(newName.Data());
95	>	br.inputVariable = branchList.at(iBranch);
96	>	TString newName = TString(br.inputCollection) + "_" + TString(br.inputVariable);
97	>	br.name = string(newName.Data());
98		treeBranches_.push_back(br);
99	<	}
99	>	if (verbose_>3) clog << " Adding branch to BNTree: " << br.name << endl;
100	>	}
101
102	<	} // end for (uint iBranchSet = 0; iBranchSet<treeBranchSets_.size(); iBranchSet++) {
102	>	} // end for (uint iBranchSet = 0; iBranchSet<treeBranchSets_.size(); iBranchSet++)
103
104
105		//parse the histogram definitions
#	Line 95 \| Line 107 \| OSUAnalysis::OSUAnalysis (const edm::Par
107
108		string tempInputCollection = histogramSets_.at(currentHistogramSet).getParameter<string> ("inputCollection");
109		if(tempInputCollection == "muon-electron pairs") tempInputCollection = "electron-muon pairs";
110	+	if(tempInputCollection == "photon-muon pairs") tempInputCollection = "muon-photon pairs";
111	+	if(tempInputCollection == "photon-electron pairs") tempInputCollection = "electron-photon pairs";
112		if(tempInputCollection == "jet-electron pairs") tempInputCollection = "electron-jet pairs";
113	+	if(tempInputCollection == "jet-photon pairs") tempInputCollection = "photon-jet pairs";
114		if(tempInputCollection == "jet-muon pairs") tempInputCollection = "muon-jet pairs";
115	+	if(tempInputCollection == "event-muon pairs") tempInputCollection = "muon-event pairs";
116	+	if(tempInputCollection == "jet-met pairs") tempInputCollection = "met-jet pairs";
117	+	if(tempInputCollection == "track-jet pairs") tempInputCollection = "track-jet pairs";
118		if(tempInputCollection == "event-track pairs") tempInputCollection = "track-event pairs";
119		if(tempInputCollection == "secondary muon-muon pairs") tempInputCollection = "muon-secondary muon pairs";
120	+	if(tempInputCollection == "secondary jet-muon pairs") tempInputCollection = "muon-secondary jet pairs";
121	+	if(tempInputCollection == "secondary photon-muon pairs") tempInputCollection = "muon-secondary photon pairs";
122	+	if(tempInputCollection == "secondary jet-electron pairs") tempInputCollection = "electron-secondary jet pairs";
123	+	if(tempInputCollection == "secondary jet-photon pairs") tempInputCollection = "photon-secondary jet pairs";
124	+	if(tempInputCollection == "secondary jet-jet pairs") tempInputCollection = "jet-secondary jet pairs";
125		if(tempInputCollection == "secondary electron-electron pairs") tempInputCollection = "electron-secondary electron pairs";
126		if(tempInputCollection == "trigobj-electron pairs") tempInputCollection = "electron-trigobj pairs";
127		if(tempInputCollection == "trigobj-muon pairs") tempInputCollection = "muon-trigobj pairs";
128		if(tempInputCollection.find("pairs")==string::npos){ //just a single object
129		if(tempInputCollection.find("secondary")!=string::npos){//secondary object
130	<	int spaceIndex = tempInputCollection.find(" ");
131	<	int secondWordLength = tempInputCollection.size() - spaceIndex;
132	<	objectsToGet.push_back(tempInputCollection.substr(spaceIndex+1,secondWordLength));
133	<	}
134	<	else{
130	>	if(tempInputCollection.find("secondary muons")!=string::npos){//treat secondary muons differently; allow for a different input collection
131	>	objectsToGet.push_back("secondary muons");
132	>	} else {
133	>	int spaceIndex = tempInputCollection.find(" ");
134	>	int secondWordLength = tempInputCollection.size() - spaceIndex;
135	>	objectsToGet.push_back(tempInputCollection.substr(spaceIndex+1,secondWordLength));
136	>	}
137	>	} else{
138		objectsToGet.push_back(tempInputCollection);
139		}
140		objectsToPlot.push_back(tempInputCollection);
141	<	objectsToCut.push_back(tempInputCollection);
141	>	objectsToFlag.push_back(tempInputCollection);
142		} else { //pair of objects, need to add the pair and the individual objects to the lists of things to Get/Plot/Cut
143		string obj1;
144		string obj2;
145		getTwoObjs(tempInputCollection, obj1, obj2);
146		string obj2ToGet = getObjToGet(obj2);
147	<	objectsToCut.push_back(tempInputCollection);
148	<	objectsToCut.push_back(obj1);
149	<	objectsToCut.push_back(obj2);
147	>	objectsToFlag.push_back(tempInputCollection);
148	>	objectsToFlag.push_back(obj1);
149	>	objectsToFlag.push_back(obj2);
150		objectsToPlot.push_back(tempInputCollection);
151		objectsToPlot.push_back(obj1);
152		objectsToPlot.push_back(obj2);
153		objectsToGet.push_back(tempInputCollection);
154		objectsToGet.push_back(obj1);
155		objectsToGet.push_back(obj2ToGet);
156	<	} // end else
157	<
158	<
159	<
156	>	} // end else
157	>	if (find(objectsToPlot.begin(), objectsToPlot.end(), "events") != objectsToPlot.end())
158	>	objectsToGet.push_back("jets");
159	>
160	>
161		vector<edm::ParameterSet> histogramList_ (histogramSets_.at(currentHistogramSet).getParameter<vector<edm::ParameterSet> >("histograms"));
162
163		for(uint currentHistogram = 0; currentHistogram != histogramList_.size(); currentHistogram++){
#	Line 150 \| Line 177 \| OSUAnalysis::OSUAnalysis (const edm::Par
177		histograms.push_back(tempHistogram);
178
179		}
180	<	} // for(uint currentHistogramSet = 0; currentHistogramSet != histogramSets_.size(); currentHistogramSet++){
180	>	} // for(uint currentHistogramSet = 0; currentHistogramSet != histogramSets_.size(); currentHistogramSet++)
181
182		//make unique vector of objects we need to plot (so we can book a histogram with the number of each object)
183		sort( objectsToPlot.begin(), objectsToPlot.end() );
#	Line 162 \| Line 189 \| OSUAnalysis::OSUAnalysis (const edm::Par
189		for(uint currentObjectIndex = 0; currentObjectIndex != objectsToPlot.size(); currentObjectIndex++){
190
191		string currentObject = objectsToPlot.at(currentObjectIndex);
192	<	if(currentObject != "muons" && currentObject != "secondary muons" && currentObject != "secondary electrons" && currentObject != "electrons" && currentObject != "taus" && currentObject != "tracks" && currentObject != "photons" && currentObject != "superclusters") continue;
192	>	if(currentObject != "muons" &&
193	>	currentObject != "secondary muons" &&
194	>	currentObject != "secondary electrons" &&
195	>	currentObject != "electrons" &&
196	>	currentObject != "taus" &&
197	>	currentObject != "tracks" &&
198	>	currentObject != "photons" &&
199	>	currentObject != "secondary photons"&&
200	>	currentObject != "superclusters")
201	>	continue;
202
203		histogram tempIdHisto;
204		histogram tempMomIdHisto;
#	Line 177 \| Line 213 \| OSUAnalysis::OSUAnalysis (const edm::Par
213		tempIdVsGmaIdHisto.inputCollection = currentObject;
214
215		if(currentObject == "secondary muons") currentObject = "secondaryMuons";
216	+	if(currentObject == "secondary photons") currentObject = "secondaryPhotons";
217		if(currentObject == "secondary electrons") currentObject = "secondaryElectrons";
218
219		currentObject = currentObject.substr(0, currentObject.size()-1);
#	Line 232 \| Line 269 \| OSUAnalysis::OSUAnalysis (const edm::Par
269		string channelName (channels_.at(currentChannel).getParameter<string>("name"));
270		tempChannel.name = channelName;
271		TString channelLabel = channelName;
272	+	if (verbose_) clog << "Processing channel: " << channelName << endl;
273
274		//set triggers for this channel
275		vector<string> triggerNames;
#	Line 259 \| Line 297 \| OSUAnalysis::OSUAnalysis (const edm::Par
297		//create cutFlow for this channel
298		cutFlows_.push_back (new CutFlow (fs_, channelName));
299		vector<TFileDirectory> directories; //vector of directories in the output file.
300	+	vector<TFileDirectory> treeDirectories; //vector of directories for trees in the output file.
301		vector<string> subSubDirNames;//subdirectories in each channel.
302		//get list of cuts for this channel
303		vector<edm::ParameterSet> cuts_ (channels_.at(currentChannel).getParameter<vector<edm::ParameterSet> >("cuts"));
#	Line 270 \| Line 309 \| OSUAnalysis::OSUAnalysis (const edm::Par
309		//store input collection for cut
310		string tempInputCollection = cuts_.at(currentCut).getParameter<string> ("inputCollection");
311		if(tempInputCollection == "muon-electron pairs") tempInputCollection = "electron-muon pairs";
312	+	if(tempInputCollection == "photon-electron pairs") tempInputCollection = "electron-photon pairs";
313	+	if(tempInputCollection == "photon-muon pairs") tempInputCollection = "muon-photon pairs";
314		if(tempInputCollection == "jet-electron pairs") tempInputCollection = "electron-jet pairs";
315		if(tempInputCollection == "jet-muon pairs") tempInputCollection = "muon-jet pairs";
316	+	if(tempInputCollection == "event-muon pairs") tempInputCollection = "muon-event pairs";
317	+	if(tempInputCollection == "jet-met pairs") tempInputCollection = "met-jet pairs";
318	+	if(tempInputCollection == "track-jet pairs") tempInputCollection = "track-jet pairs";
319	+	if(tempInputCollection == "jet-photon pairs") tempInputCollection = "photon-jet pairs";
320		if(tempInputCollection == "event-track pairs") tempInputCollection = "track-event pairs";
321		if(tempInputCollection == "secondary muon-muon pairs") tempInputCollection = "muon-secondary muon pairs";
322	+	if(tempInputCollection == "secondary jet-jet pairs") tempInputCollection = "jet-secondary jet pairs";
323	+	if(tempInputCollection == "secondary jet-muon pairs") tempInputCollection = "muon-secondary jet pairs";
324	+	if(tempInputCollection == "secondary photon-muon pairs") tempInputCollection = "muon-secondary photon pairs";
325	+	if(tempInputCollection == "secondary jet-photon pairs") tempInputCollection = "photon-secondary jet pairs";
326	+	if(tempInputCollection == "secondary jet-electron pairs") tempInputCollection = "electron-secondary jet pairs";
327		if(tempInputCollection == "secondary electron-electron pairs") tempInputCollection = "electron-secondary electron pairs";
328		if(tempInputCollection == "trigobj-electron pairs") tempInputCollection = "electron-trigobj pairs";
329		if(tempInputCollection == "trigobj-muon pairs") tempInputCollection = "muon-trigobj pairs";
330		tempCut.inputCollection = tempInputCollection;
331		if(tempInputCollection.find("pairs")==string::npos){ //just a single object
332		if(tempInputCollection.find("secondary")!=string::npos){//secondary object
333	<	int spaceIndex = tempInputCollection.find(" ");
334	<	int secondWordLength = tempInputCollection.size() - spaceIndex;
335	<	objectsToGet.push_back(tempInputCollection.substr(spaceIndex+1,secondWordLength));
333	>	if(tempInputCollection.find("secondary muons")!=string::npos){//treat secondary muons differently; allow for a different input collection
334	>	objectsToGet.push_back("secondary muons");
335	>	} else {
336	>	int spaceIndex = tempInputCollection.find(" ");
337	>	int secondWordLength = tempInputCollection.size() - spaceIndex;
338	>	objectsToGet.push_back(tempInputCollection.substr(spaceIndex+1,secondWordLength));
339	>	}
340		}
341		else{
342		objectsToGet.push_back(tempInputCollection);
343		}
344		objectsToCut.push_back(tempInputCollection);
345	+	objectsToFlag.push_back(tempInputCollection);
346		}
347		else{//pair of objects, need to add them both to objectsToGet
348		string obj1;
#	Line 297 \| Line 352 \| OSUAnalysis::OSUAnalysis (const edm::Par
352		objectsToCut.push_back(tempInputCollection);
353		objectsToCut.push_back(obj1);
354		objectsToCut.push_back(obj2);
355	+	objectsToFlag.push_back(tempInputCollection);
356	+	objectsToFlag.push_back(obj1);
357	+	objectsToFlag.push_back(obj2);
358		objectsToGet.push_back(tempInputCollection);
359		objectsToGet.push_back(obj1);
360		objectsToGet.push_back(obj2ToGet);
#	Line 309 \| Line 367 \| OSUAnalysis::OSUAnalysis (const edm::Par
367		string cutString = cuts_.at(currentCut).getParameter<string> ("cutString");
368		vector<string> cutStringVector = splitString(cutString);
369		if(cutStringVector.size()!=3 && cutStringVector.size() % 4 !=3){
370	<	cout << "Error: Didn't find the expected number elements in the following cut string: '" << cutString << "'\n";
370	>	clog << "Error: Didn't find the expected number elements in the following cut string: '" << cutString << "'\n";
371		exit(0);
372		}
373		tempCut.numSubcuts = (cutStringVector.size()+1)/4;
#	Line 335 \| Line 393 \| OSUAnalysis::OSUAnalysis (const edm::Par
393		string numberRequiredString = cuts_.at(currentCut).getParameter<string> ("numberRequired");
394		vector<string> numberRequiredVector = splitString(numberRequiredString);
395		if(numberRequiredVector.size()!=2){
396	<	cout << "Error: Didn't find two elements in the following number requirement string: '" << numberRequiredString << "'\n";
396	>	clog << "Error: Didn't find two elements in the following number requirement string: '" << numberRequiredString << "'\n";
397		exit(0);
398		}
399
#	Line 343 \| Line 401 \| OSUAnalysis::OSUAnalysis (const edm::Par
401		tempCut.numberRequired = numberRequiredInt;// number of objects required to pass the cut
402		tempCut.eventComparativeOperator = numberRequiredVector.at(0);// comparison to make
403
404	<	//Set up vectors to store the directories and subDIrectories for each channel.
404	>	//Set up vectors to store the directories and subDirectories for each channel.
405		string subSubDirName;
406		string tempCutName;
407		if(cuts_.at(currentCut).exists("alias")){
408		tempCutName = cuts_.at(currentCut).getParameter<string> ("alias");
409	<	subSubDirName = "After " + cuts_.at(currentCut).getParameter<string> ("alias") + " Cut Applied";
409	>	subSubDirName = "After " + tempCutName + " Cut Applied";
410		}
411		else{
412		//construct string for cutflow table
#	Line 359 \| Line 417 \| OSUAnalysis::OSUAnalysis (const edm::Par
417		subSubDirName = "After " + numberRequiredString + " " + collectionString + " with " + cutString + " Cut Applied";
418		}
419
420	+	tempCut.isVeto = false;
421	+	if(cuts_.at(currentCut).exists("isVeto")){
422	+	bool isVeto = cuts_.at(currentCut).getParameter<bool> ("isVeto");
423	+	if (isVeto == true) tempCut.isVeto = true;
424	+	}
425		subSubDirNames.push_back(subSubDirName);
426		tempCut.name = tempCutName;
427	+	if (verbose_) clog << "Setting up cut, index: " << currentCut << ", input collection: " << tempInputCollection<< ", name: " << tempCut.name << endl;
428
429		tempChannel.cuts.push_back(tempCut);
430
#	Line 374 \| Line 438 \| OSUAnalysis::OSUAnalysis (const edm::Par
438		//loop over the cuts to set up subdirectory for each cut if GetPlotsAfterEachCut_ is true.
439		if(GetPlotsAfterEachCut_){
440		for( uint currentDir=0; currentDir != subSubDirNames.size(); currentDir++){
441	<	TFileDirectory subSubDir = subDir.mkdir( subSubDirNames[currentDir] );
442	<	directories.push_back(subSubDir);
443	<	map<string, TH1D*> oneDhistoMap;
444	<	oneDHistsTmp.push_back(oneDhistoMap);
445	<	map<string, TH2D*> twoDhistoMap;
446	<	twoDHistsTmp.push_back(twoDhistoMap);
441	>	TFileDirectory subSubDir = subDir.mkdir( subSubDirNames[currentDir] );
442	>	directories.push_back(subSubDir);
443	>	map<string, TH1D*> oneDhistoMap;
444	>	oneDHistsTmp.push_back(oneDhistoMap);
445	>	map<string, TH2D*> twoDhistoMap;
446	>	twoDHistsTmp.push_back(twoDhistoMap);
447		}
448	+	treeDirectories.push_back(subDir);
449		oneDHists_.push_back(oneDHistsTmp);
450		twoDHists_.push_back(twoDHistsTmp);
451		}
#	Line 393 \| Line 458 \| OSUAnalysis::OSUAnalysis (const edm::Par
458		oneDHists_.push_back(oneDHistsTmp);
459		twoDHists_.push_back(twoDHistsTmp);
460		directories.push_back(subDir);
461	+	treeDirectories.push_back(subDir);
462
463		}
464
465	+	for(uint currentDir = 0; !useEDMFormat_ && currentDir != treeDirectories.size(); currentDir++){
466	+	TTree* newTree = treeDirectories.at(currentDir).make<TTree> (TString("BNTree_"+channelLabel), TString("BNTree_"+channelLabel));
467	+	BNTrees_.push_back(newTree);
468	+	BNTrees_.back()->Branch("event_runInt", &BNTreeBranchVals_runInt_, "event_runInt/I");
469	+	BNTrees_.back()->Branch("event_lumiInt", &BNTreeBranchVals_lumiInt_, "event_lumiInt/I");
470	+	BNTrees_.back()->Branch("event_evtLong", &BNTreeBranchVals_evtLong_, "event_evtLong/L");
471	+	for (uint iBranch = 0; iBranch < treeBranches_.size(); iBranch++){
472	+	BranchSpecs currentVar = treeBranches_.at(iBranch);
473	+	vector<float> newVec;
474	+	BNTreeBranchVals_[currentVar.name] = newVec;
475	+	BNTrees_.back()->Branch(TString(currentVar.name), &BNTreeBranchVals_.at(currentVar.name));
476	+	} // end for (uint iBranch = 0; iBranch < treeBranches_.size(); iBranch++)
477	+	}
478
479		//book all histograms included in the configuration
480		for(uint currentDir = 0; currentDir != directories.size(); currentDir++){//loop over all the directories.
402	–
403	–	TTree* newTree = directories.at(currentDir).make<TTree> (TString("BNTree_"+channelLabel), TString("BNTree_"+channelLabel));
404	–	BNTrees_.push_back(newTree);
405	–	for (uint iBranch = 0; iBranch < treeBranches_.size(); iBranch++){
406	–	BranchSpecs currentVar = treeBranches_.at(iBranch);
407	–	vector<float> newVec;
408	–	BNTreeBranchVals_[currentVar.name] = newVec;
409	–	BNTrees_.back()->Branch(TString(currentVar.name), &BNTreeBranchVals_.at(currentVar.name));
410	–	} // end for (uint iBranch = 0; iBranch < treeBranches_.size(); iBranch++){
481
482		for(uint currentHistogramIndex = 0; currentHistogramIndex != histograms.size(); currentHistogramIndex++){
483
484	<	histogram currentHistogram = histograms.at(currentHistogramIndex);
485	<	int numBinsElements = currentHistogram.bins.size();
486	<	int numInputVariables = currentHistogram.inputVariables.size();
487	<	int numBinEdgesX = currentHistogram.variableBinsX.size();
488	<	int numBinEdgesY = currentHistogram.variableBinsY.size();
489	<
490	<	if(numBinsElements == 1){
491	<	if(numBinEdgesX > 1){
492	<	if(numBinEdgesY > 1)
493	<	numBinsElements = 6;
494	<	else
495	<	numBinsElements = 3;
496	<	}
497	<	}
498	<	if(numBinsElements != 3 && numBinsElements !=6){
499	<	cout << "Error: Didn't find correct number of bin specifications for histogram named '" << currentHistogram.name << "'\n";
500	<	exit(0);
501	<	}
502	<	else if((numBinsElements == 3 && numInputVariables !=1) \|\| (numBinsElements == 6 && numInputVariables!=2)){
503	<	cout << "Error: Didn't find correct number of input variables for histogram named '" << currentHistogram.name << "'\n";
504	<	exit(0);
505	<	}
506	<	else if(numBinsElements == 3){
507	<	if (currentHistogram.bins.size () == 3)
508	<	oneDHists_.at(currentChannel).at(currentDir)[currentHistogram.name] = directories.at(currentDir).make<TH1D> (TString(currentHistogram.name),channelLabel+" channel: "+currentHistogram.title, currentHistogram.bins.at(0), currentHistogram.bins.at(1), currentHistogram.bins.at(2));
509	<	else
510	<	{
511	<	oneDHists_.at(currentChannel).at(currentDir)[currentHistogram.name] = directories.at(currentDir).make<TH1D> (TString(currentHistogram.name),channelLabel+" channel: "+currentHistogram.title, numBinEdgesX - 1, currentHistogram.variableBinsX.data ());
512	<	}
513	<	}
514	<	else if(numBinsElements == 6){
515	<	if (currentHistogram.bins.size () == 6)
516	<	twoDHists_.at(currentChannel).at(currentDir)[currentHistogram.name] = directories.at(currentDir).make<TH2D> (TString(currentHistogram.name),channelLabel+" channel: "+currentHistogram.title, currentHistogram.bins.at(0), currentHistogram.bins.at(1), currentHistogram.bins.at(2),currentHistogram.bins.at(3),currentHistogram.bins.at(4),currentHistogram.bins.at(5));
517	<	else
518	<	twoDHists_.at(currentChannel).at(currentDir)[currentHistogram.name] = directories.at(currentDir).make<TH2D> (TString(currentHistogram.name),channelLabel+" channel: "+currentHistogram.title, numBinEdgesX - 1, currentHistogram.variableBinsX.data (), numBinEdgesY - 1, currentHistogram.variableBinsY.data ());
519	<	}
484	>	histogram currentHistogram = histograms.at(currentHistogramIndex);
485	>	int numBinsElements = currentHistogram.bins.size();
486	>	int numInputVariables = currentHistogram.inputVariables.size();
487	>	int numBinEdgesX = currentHistogram.variableBinsX.size();
488	>	int numBinEdgesY = currentHistogram.variableBinsY.size();
489	>
490	>	if(numBinsElements == 1){
491	>	if(numBinEdgesX > 1){
492	>	if(numBinEdgesY > 1)
493	>	numBinsElements = 6;
494	>	else
495	>	numBinsElements = 3;
496	>	}
497	>	}
498	>	if(numBinsElements != 3 && numBinsElements !=6){
499	>	clog << "Error: Didn't find correct number of bin specifications for histogram named '" << currentHistogram.name << "'\n";
500	>	exit(0);
501	>	}
502	>	else if((numBinsElements == 3 && numInputVariables !=1) \|\| (numBinsElements == 6 && numInputVariables!=2)){
503	>	clog << "Error: Didn't find correct number of input variables for histogram named '" << currentHistogram.name << "'\n";
504	>	exit(0);
505	>	}
506	>	else if(numBinsElements == 3){
507	>	if (currentHistogram.bins.size () == 3)
508	>	oneDHists_.at(currentChannel).at(currentDir)[currentHistogram.name] = directories.at(currentDir).make<TH1D> (TString(currentHistogram.name),channelLabel+" channel: "+currentHistogram.title, currentHistogram.bins.at(0), currentHistogram.bins.at(1), currentHistogram.bins.at(2));
509	>	else
510	>	{
511	>	oneDHists_.at(currentChannel).at(currentDir)[currentHistogram.name] = directories.at(currentDir).make<TH1D> (TString(currentHistogram.name),channelLabel+" channel: "+currentHistogram.title, numBinEdgesX - 1, currentHistogram.variableBinsX.data ());
512	>	}
513	>	}
514	>	else if(numBinsElements == 6){
515	>	if (currentHistogram.bins.size () == 6)
516	>	twoDHists_.at(currentChannel).at(currentDir)[currentHistogram.name] = directories.at(currentDir).make<TH2D> (TString(currentHistogram.name),channelLabel+" channel: "+currentHistogram.title, currentHistogram.bins.at(0), currentHistogram.bins.at(1), currentHistogram.bins.at(2),currentHistogram.bins.at(3),currentHistogram.bins.at(4),currentHistogram.bins.at(5));
517	>	else
518	>	twoDHists_.at(currentChannel).at(currentDir)[currentHistogram.name] = directories.at(currentDir).make<TH2D> (TString(currentHistogram.name),channelLabel+" channel: "+currentHistogram.title, numBinEdgesX - 1, currentHistogram.variableBinsX.data (), numBinEdgesY - 1, currentHistogram.variableBinsY.data ());
519	>	}
520
521
522	<	if(currentHistogram.name.find("GenMatch")==string::npos) continue;
522	>	if(currentHistogram.name.find("GenMatch")==string::npos) continue;
523
524	<	// bin particle type
525	<	// --- -------------
526	<	// 0 unmatched
527	<	// 1 u
528	<	// 2 d
529	<	// 3 s
530	<	// 4 c
531	<	// 5 b
532	<	// 6 t
533	<	// 7 e
534	<	// 8 mu
535	<	// 9 tau
536	<	// 10 nu
537	<	// 11 g
538	<	// 12 gamma
539	<	// 13 Z
540	<	// 14 W
541	<	// 15 light meson
542	<	// 16 K meson
543	<	// 17 D meson
544	<	// 18 B meson
545	<	// 19 light baryon
546	<	// 20 strange baryon
547	<	// 21 charm baryon
548	<	// 22 bottom baryon
549	<	// 23 QCD string
550	<	// 24 other
551	<
552	<	vector<TString> labelArray;
553	<	labelArray.push_back("unmatched");
554	<	labelArray.push_back("u");
555	<	labelArray.push_back("d");
556	<	labelArray.push_back("s");
557	<	labelArray.push_back("c");
558	<	labelArray.push_back("b");
559	<	labelArray.push_back("t");
560	<	labelArray.push_back("e");
561	<	labelArray.push_back("#mu");
562	<	labelArray.push_back("#tau");
563	<	labelArray.push_back("#nu");
564	<	labelArray.push_back("g");
565	<	labelArray.push_back("#gamma");
566	<	labelArray.push_back("Z");
567	<	labelArray.push_back("W");
568	<	labelArray.push_back("light meson");
569	<	labelArray.push_back("K meson");
570	<	labelArray.push_back("D meson");
571	<	labelArray.push_back("B meson");
572	<	labelArray.push_back("light baryon");
573	<	labelArray.push_back("strange baryon");
574	<	labelArray.push_back("charm baryon");
575	<	labelArray.push_back("bottom baryon");
576	<	labelArray.push_back("QCD string");
577	<	labelArray.push_back("other");
578	<
579	<	for(int bin = 0; bin !=currentHistogram.bins.at(0); bin++){
580	<	if(currentHistogram.name.find("GenMatchIdVsMotherId")==string::npos && currentHistogram.name.find("GenMatchIdVsGrandmotherId")==string::npos) {
581	<	oneDHists_.at(currentChannel).at(currentDir)[currentHistogram.name]->GetXaxis()->SetBinLabel(bin+1,labelArray.at(bin));
582	<	}
583	<	else {
584	<	twoDHists_.at(currentChannel).at(currentDir)[currentHistogram.name]->GetYaxis()->SetBinLabel(bin+1,labelArray.at(currentHistogram.bins.at(0)-bin-1));
585	<	twoDHists_.at(currentChannel).at(currentDir)[currentHistogram.name]->GetXaxis()->SetBinLabel(bin+1,labelArray.at(bin));
586	<	}
587	<	}
588	<	if(currentHistogram.name.find("GenMatchIdVsMotherId")!=string::npos \|\| currentHistogram.name.find("GenMatchIdVsGrandmotherId")!=string::npos) {
589	<	twoDHists_.at(currentChannel).at(currentDir)[currentHistogram.name]->GetXaxis()->CenterTitle();
590	<	twoDHists_.at(currentChannel).at(currentDir)[currentHistogram.name]->GetYaxis()->CenterTitle();
591	<	}
524	>	// bin particle type
525	>	// --- -------------
526	>	// 0 unmatched
527	>	// 1 u
528	>	// 2 d
529	>	// 3 s
530	>	// 4 c
531	>	// 5 b
532	>	// 6 t
533	>	// 7 e
534	>	// 8 mu
535	>	// 9 tau
536	>	// 10 nu
537	>	// 11 g
538	>	// 12 gamma
539	>	// 13 Z
540	>	// 14 W
541	>	// 15 light meson
542	>	// 16 K meson
543	>	// 17 D meson
544	>	// 18 B meson
545	>	// 19 light baryon
546	>	// 20 strange baryon
547	>	// 21 charm baryon
548	>	// 22 bottom baryon
549	>	// 23 QCD string
550	>	// 24 other
551	>
552	>	vector<TString> labelArray;
553	>	labelArray.push_back("unmatched");
554	>	labelArray.push_back("u");
555	>	labelArray.push_back("d");
556	>	labelArray.push_back("s");
557	>	labelArray.push_back("c");
558	>	labelArray.push_back("b");
559	>	labelArray.push_back("t");
560	>	labelArray.push_back("e");
561	>	labelArray.push_back("#mu");
562	>	labelArray.push_back("#tau");
563	>	labelArray.push_back("#nu");
564	>	labelArray.push_back("g");
565	>	labelArray.push_back("#gamma");
566	>	labelArray.push_back("Z");
567	>	labelArray.push_back("W");
568	>	labelArray.push_back("light meson");
569	>	labelArray.push_back("K meson");
570	>	labelArray.push_back("D meson");
571	>	labelArray.push_back("B meson");
572	>	labelArray.push_back("light baryon");
573	>	labelArray.push_back("strange baryon");
574	>	labelArray.push_back("charm baryon");
575	>	labelArray.push_back("bottom baryon");
576	>	labelArray.push_back("QCD string");
577	>	labelArray.push_back("other");
578	>
579	>	for(int bin = 0; bin !=currentHistogram.bins.at(0); bin++){
580	>	if(currentHistogram.name.find("GenMatchIdVsMotherId")==string::npos && currentHistogram.name.find("GenMatchIdVsGrandmotherId")==string::npos) {
581	>	oneDHists_.at(currentChannel).at(currentDir)[currentHistogram.name]->GetXaxis()->SetBinLabel(bin+1,labelArray.at(bin));
582	>	}
583	>	else {
584	>	twoDHists_.at(currentChannel).at(currentDir)[currentHistogram.name]->GetYaxis()->SetBinLabel(bin+1,labelArray.at(currentHistogram.bins.at(0)-bin-1));
585	>	twoDHists_.at(currentChannel).at(currentDir)[currentHistogram.name]->GetXaxis()->SetBinLabel(bin+1,labelArray.at(bin));
586	>	}
587	>	}
588	>	if(currentHistogram.name.find("GenMatchIdVsMotherId")!=string::npos \|\| currentHistogram.name.find("GenMatchIdVsGrandmotherId")!=string::npos) {
589	>	twoDHists_.at(currentChannel).at(currentDir)[currentHistogram.name]->GetXaxis()->CenterTitle();
590	>	twoDHists_.at(currentChannel).at(currentDir)[currentHistogram.name]->GetYaxis()->CenterTitle();
591	>	}
592
593	<	} // end for(uint currentHistogramIndex = 0; currentHistogramIndex != histograms.size(); currentHistogramIndex++){
593	>	} // end for(uint currentHistogramIndex = 0; currentHistogramIndex != histograms.size(); currentHistogramIndex++)
594
595
596		// Book a histogram for the number of each object type to be plotted.
597		// Name of objectToPlot here must match the name specified in OSUAnalysis::analyze().
598		for (uint currentObjectIndex = 0; currentObjectIndex != objectsToPlot.size(); currentObjectIndex++){
599	<	string currentObject = objectsToPlot.at(currentObjectIndex);
600	<	int maxNum = 10;
601	<	if(currentObject == "mcparticles") maxNum = 50;
602	<	else if(currentObject == "primaryvertexs") maxNum = 50;
603	<
604	<	if(currentObject == "muon-muon pairs") currentObject = "dimuonPairs";
605	<	else if(currentObject == "electron-electron pairs") currentObject = "dielectronPairs";
606	<	else if(currentObject == "electron-muon pairs") currentObject = "electronMuonPairs";
607	<	else if(currentObject == "secondary jets") currentObject = "secondaryJets";
608	<	else if(currentObject == "jet-jet pairs") currentObject = "dijetPairs";
609	<	else if(currentObject == "electron-jet pairs") currentObject = "electronJetPairs";
610	<	else if(currentObject == "muon-jet pairs") currentObject = "muonJetPairs";
611	<	else if(currentObject == "track-event pairs") currentObject = "trackEventPairs";
612	<	else if(currentObject == "electron-track pairs") currentObject = "electronTrackPairs";
613	<	else if(currentObject == "muon-track pairs") currentObject = "muonTrackPairs";
614	<	else if(currentObject == "muon-tau pairs") currentObject = "muonTauPairs";
615	<	else if(currentObject == "tau-tau pairs") currentObject = "ditauPairs";
616	<	else if(currentObject == "tau-track pairs") currentObject = "tauTrackPairs";
617	<	else if(currentObject == "muon-secondary muon pairs") currentObject = "muonSecondaryMuonPairs";
618	<	else if(currentObject == "secondary muons") currentObject = "secondaryMuons";
619	<	else if(currentObject == "electron-secondary electron pairs") currentObject = "electronSecondaryElectronPairs";
620	<	else if(currentObject == "secondary electrons") currentObject = "secondaryElectrons";
621	<	else if(currentObject == "electron-trigobj pairs") currentObject = "electronTrigobjPairs";
622	<	else if(currentObject == "muon-trigobj pairs") currentObject = "muonTrigobjPairs";
623	<
624	<	currentObject.at(0) = toupper(currentObject.at(0));
625	<	string histoName = "num" + currentObject;
626	<
627	<	if(histoName == "numPrimaryvertexs"){
628	<	string newHistoName = histoName + "BeforePileupCorrection";
629	<	oneDHists_.at(currentChannel).at(currentDir)[newHistoName] = directories.at(currentDir).make<TH1D> (TString(newHistoName),channelLabel+" channel: Number of Selected "+currentObject+" Before Pileup Correction; # "+currentObject, maxNum, 0, maxNum);
630	<	newHistoName = histoName + "AfterPileupCorrection";
631	<	oneDHists_.at(currentChannel).at(currentDir)[newHistoName] = directories.at(currentDir).make<TH1D> (TString(newHistoName),channelLabel+" channel: Number of Selected "+currentObject+ " After Pileup Correction; # "+currentObject, maxNum, 0, maxNum);
632	<	}
633	<	else
634	<	oneDHists_.at(currentChannel).at(currentDir)[histoName] = directories.at(currentDir).make<TH1D> (TString(histoName),channelLabel+" channel: Number of Selected "+currentObject+"; # "+currentObject, maxNum, 0, maxNum);
599	>	string currentObject = objectsToPlot.at(currentObjectIndex);
600	>	int maxNum = 10;
601	>	if(currentObject == "mcparticles") maxNum = 50;
602	>	else if(currentObject == "primaryvertexs") maxNum = 50;
603	>
604	>	if(currentObject == "muon-muon pairs") currentObject = "dimuonPairs";
605	>	else if(currentObject == "electron-electron pairs") currentObject = "dielectronPairs";
606	>	else if(currentObject == "electron-muon pairs") currentObject = "electronMuonPairs";
607	>	else if(currentObject == "electron-photon pairs") currentObject = "electronPhotonPairs";
608	>	else if(currentObject == "muon-photon pairs") currentObject = "muonPhotonPairs";
609	>	else if(currentObject == "secondary jets") currentObject = "secondaryJets";
610	>	else if(currentObject == "secondary photons") currentObject = "secondaryPhotons";
611	>	else if(currentObject == "jet-jet pairs") currentObject = "dijetPairs";
612	>	else if(currentObject == "jet-secondary jet pairs") currentObject = "jetSecondaryJetPairs";
613	>	else if(currentObject == "electron-jet pairs") currentObject = "electronJetPairs";
614	>	else if(currentObject == "muon-jet pairs") currentObject = "muonJetPairs";
615	>	else if(currentObject == "muon-event pairs") currentObject = "muonEventPairs";
616	>	else if(currentObject == "photon-jet pairs") currentObject = "photonJetPairs";
617	>	else if(currentObject == "met-jet pairs") currentObject = "metJetPairs";
618	>	else if(currentObject == "track-jet pairs") currentObject = "trackJetPairs";
619	>	else if(currentObject == "muon-secondary jet pairs") currentObject = "muonSecondaryJetPairs";
620	>	else if(currentObject == "muon-secondary photon pairs") currentObject = "muonSecondaryPhotonPairs";
621	>	else if(currentObject == "photon-secondary jet pairs") currentObject = "photonSecondaryJetPairs";
622	>	else if(currentObject == "electron-secondary jet pairs") currentObject = "electronSecondaryJetPairs";
623	>	else if(currentObject == "track-event pairs") currentObject = "trackEventPairs";
624	>	else if(currentObject == "electron-track pairs") currentObject = "electronTrackPairs";
625	>	else if(currentObject == "muon-track pairs") currentObject = "muonTrackPairs";
626	>	else if(currentObject == "secondary muon-track pairs") currentObject = "secondaryMuonTrackPairs";
627	>	else if(currentObject == "muon-tau pairs") currentObject = "muonTauPairs";
628	>	else if(currentObject == "tau-tau pairs") currentObject = "ditauPairs";
629	>	else if(currentObject == "tau-track pairs") currentObject = "tauTrackPairs";
630	>	else if(currentObject == "muon-secondary muon pairs") currentObject = "muonSecondaryMuonPairs";
631	>	else if(currentObject == "secondary muons") currentObject = "secondaryMuons";
632	>	else if(currentObject == "electron-secondary electron pairs") currentObject = "electronSecondaryElectronPairs";
633	>	else if(currentObject == "secondary electrons") currentObject = "secondaryElectrons";
634	>	else if(currentObject == "electron-trigobj pairs") currentObject = "electronTrigobjPairs";
635	>	else if(currentObject == "muon-trigobj pairs") currentObject = "muonTrigobjPairs";
636	>	else if(currentObject == "electron-mcparticle pairs") currentObject = "electronMCparticlePairs";
637	>
638	>
639	>	currentObject.at(0) = toupper(currentObject.at(0));
640	>	string histoName = "num" + currentObject;
641	>
642	>	if(histoName == "numPrimaryvertexs"){
643	>	string newHistoName = histoName + "BeforePileupCorrection";
644	>	oneDHists_.at(currentChannel).at(currentDir)[newHistoName] = directories.at(currentDir).make<TH1D> (TString(newHistoName),channelLabel+" channel: Number of Selected "+currentObject+" Before Pileup Correction; # "+currentObject, maxNum, 0, maxNum);
645	>	newHistoName = histoName + "AfterPileupCorrection";
646	>	oneDHists_.at(currentChannel).at(currentDir)[newHistoName] = directories.at(currentDir).make<TH1D> (TString(newHistoName),channelLabel+" channel: Number of Selected "+currentObject+ " After Pileup Correction; # "+currentObject, maxNum, 0, maxNum);
647	>	}
648	>	else
649	>	oneDHists_.at(currentChannel).at(currentDir)[histoName] = directories.at(currentDir).make<TH1D> (TString(histoName),channelLabel+" channel: Number of Selected "+currentObject+"; # "+currentObject, maxNum, 0, maxNum);
650	>	}
651	>
652	>	if (verbose_) {
653	>	clog << "List of 1D histograms booked for channel " << channelName << " and directory " << currentDir << ":" << endl;
654	>	for(map<string, TH1D*>::iterator
655	>	iter = oneDHists_.at(currentChannel).at(currentDir).begin();
656	>	iter != oneDHists_.at(currentChannel).at(currentDir).end();
657	>	iter++) {
658	>	clog << " " << iter->first
659	>	<< ": name=" << iter->second->GetName()
660	>	<< ", title=" << iter->second->GetTitle()
661	>	<< ", bins=(" << iter->second->GetNbinsX()
662	>	<< "," << iter->second->GetXaxis()->GetXmin()
663	>	<< "," << iter->second->GetXaxis()->GetXmax()
664	>	<< ")" << endl;
665	>	}
666	>	clog << "List of 2D histograms booked for channel " << channelName << " and directory " << currentDir << ":" << endl;
667	>	for(map<string, TH2D*>::iterator
668	>	iter = twoDHists_.at(currentChannel).at(currentDir).begin();
669	>	iter != twoDHists_.at(currentChannel).at(currentDir).end();
670	>	iter++) {
671	>	clog << " " << iter->first
672	>	<< ": name=" << iter->second->GetName()
673	>	<< ", title=" << iter->second->GetTitle()
674	>	<< ", binsX=(" << iter->second->GetNbinsX()
675	>	<< "," << iter->second->GetXaxis()->GetXmin()
676	>	<< "," << iter->second->GetXaxis()->GetXmax()
677	>	<< ")"
678	>	<< ", binsY=(" << iter->second->GetNbinsY()
679	>	<< "," << iter->second->GetYaxis()->GetXmin()
680	>	<< "," << iter->second->GetYaxis()->GetXmax()
681	>	<< ")"
682	>	<< endl;
683	>	}
684		}
685	+
686		}//end of loop over directories
687		channels.push_back(tempChannel);
688		tempChannel.cuts.clear();
689		}//end loop over channels
690
691
692	+	// Create the cutflow histogram and fill with 0 weight, in case no events are found in the input file.
693	+	for(uint currentChannelIndex = 0; currentChannelIndex != channels.size(); currentChannelIndex++){
694	+	channel currentChannel = channels.at(currentChannelIndex);
695	+	if(currentChannel.triggers.size() != 0 \|\| currentChannel.triggersToVeto.size() != 0){ //triggers specified
696	+	cutFlows_.at(currentChannelIndex)->at("trigger") = true;
697	+	}
698	+	for(uint currentCutIndex = 0; currentCutIndex != currentChannel.cuts.size(); currentCutIndex++){
699	+	cut currentCut = currentChannel.cuts.at(currentCutIndex);
700	+	cutFlows_.at(currentChannelIndex)->at (currentCut.name) = true;
701	+	}
702	+	cutFlows_.at(currentChannelIndex)->fillCutFlow(0); // fill cutflow with 0 weight, just to create the cutflow histograms
703	+	}
704	+
705		//make unique vector of objects we need to get from the event
706		sort( objectsToGet.begin(), objectsToGet.end() );
707		objectsToGet.erase( unique( objectsToGet.begin(), objectsToGet.end() ), objectsToGet.end() );
708		//make unique vector of objects we need to cut on
709		sort( objectsToCut.begin(), objectsToCut.end() );
710		objectsToCut.erase( unique( objectsToCut.begin(), objectsToCut.end() ), objectsToCut.end() );
711	+	//make unique vector of objects we need to set flags for
712	+	sort( objectsToFlag.begin(), objectsToFlag.end() );
713	+	objectsToFlag.erase( unique( objectsToFlag.begin(), objectsToFlag.end() ), objectsToFlag.end() );
714
715	+	// Move all paired objects to the end of the list, so that the flags for single objects are always set before those of paired objects.
716	+	for (uint i=0; i<objectsToFlag.size(); i++) {
717	+	if (objectsToFlag.at(i).find("pairs")!=string::npos) { // if it contains "pairs"
718	+	objectsToFlag.push_back(objectsToFlag.at(i));
719	+	objectsToFlag.erase(objectsToFlag.begin()+i);
720	+	}
721	+	}
722	+
723	+	if (verbose_) {
724	+	clog << "List of channels:" << endl;
725	+	for (uint i=0; i<channels.size(); i++) {
726	+	clog << " " << channels.at(i).name << endl;
727	+	}
728	+	clog << "List of objects to get:" << endl;
729	+	for (uint i=0; i<objectsToGet.size(); i++) {
730	+	clog << " " << objectsToGet.at(i) << endl;
731	+	}
732	+	clog << "List of objects to plot:" << endl;
733	+	for (uint i=0; i<objectsToPlot.size(); i++) {
734	+	clog << " " << objectsToPlot.at(i) << endl;
735	+	}
736	+	clog << "List of objects to cut:" << endl;
737	+	for (uint i=0; i<objectsToCut.size(); i++) {
738	+	clog << " " << objectsToCut.at(i) << endl;
739	+	}
740	+	clog << "List of objects to flag:" << endl;
741	+	for (uint i=0; i<objectsToFlag.size(); i++) {
742	+	clog << " " << objectsToFlag.at(i) << endl;
743	+	}
744	+	}
745	+
746	+	produces<map<string, bool> > ("channelDecisions");
747	+
748	+	if (printEventInfo_) {
749	+	findEventsLog = new ofstream();
750	+	findEventsLog->open("findEvents.txt");
751	+	clog << "Listing run:lumi:event in file findEvents.txt for events that pass full selection (of any channel)." << endl;
752	+	} else {
753	+	findEventsLog = 0;
754	+	}
755	+
756	+	isFirstEvent_ = true;
757	+
758	+	if (verbose_) clog << "Finished OSUAnalysis::OSUAnalysis constructor." << endl;
759	+
760	+
761	+	} // end constructor OSUAnalysis::OSUAnalysis()
762
580	–	}
763
764		OSUAnalysis::~OSUAnalysis ()
765		{
766
767	<	// for (uint iTree=0; iTree<BNTrees_.size(); iTree++) {
586	<	// if (!BNTrees_.at(iTree)) { cout << "ERROR: Undefined BNTree. Will likely seg fault." << endl; }
587	<	// cout << "Debug: Executing AutoSave." << endl;
588	<	// BNTrees_.at(iTree)->AutoSave("Overwrite"); // Save at end of job, to prevent duplicate key.
589	<	// }
767	>	if (verbose_) clog << "Beginning OSUAnalysis::OSUAnalysis destructor." << endl;
768
769		// Destroying the CutFlow objects causes the cut flow numbers and time
770		// information to be printed to standard output.
771		for(uint currentChannel = 0; currentChannel != channels_.size(); currentChannel++){
772		delete cutFlows_.at(currentChannel);
773		}
774	+
775	+	if (printEventInfo_ && findEventsLog) findEventsLog->close();
776	+
777	+	clog << "=============================================" << endl;
778	+	clog << "Successfully completed OSUAnalysis." << endl;
779	+	clog << "=============================================" << endl;
780	+
781	+	if (verbose_) clog << "Finished OSUAnalysis::OSUAnalysis destructor." << endl;
782	+
783		}
784
785		void
786	<	OSUAnalysis::analyze (const edm::Event &event, const edm::EventSetup &setup)
786	>	OSUAnalysis::produce (edm::Event &event, const edm::EventSetup &setup)
787		{
601	–
788		// Retrieve necessary collections from the event.
789
790	<	if (find(objectsToGet.begin(), objectsToGet.end(), "triggers") != objectsToGet.end())
790	>	if (verbose_) clog << "Beginning OSUAnalysis::produce." << endl;
791	>
792	>	if (find(objectsToGet.begin(), objectsToGet.end(), "triggers") != objectsToGet.end()) {
793		event.getByLabel (triggers_, triggers);
794	+	if (!triggers.product()) cout << "ERROR: could not get triggers input collection" << endl;
795	+	}
796
797	<	if (find(objectsToGet.begin(), objectsToGet.end(), "trigobjs") != objectsToGet.end())
797	>	if (find(objectsToGet.begin(), objectsToGet.end(), "trigobjs") != objectsToGet.end()) {
798		event.getByLabel (trigobjs_, trigobjs);
799	+	if (!trigobjs.product()) cout << "ERROR: could not get trigobjs input collection" << endl;
800	+	}
801
802	<	if (find(objectsToGet.begin(), objectsToGet.end(), "jets") != objectsToGet.end())
802	>	if (find(objectsToGet.begin(), objectsToGet.end(), "jets") != objectsToGet.end()) {
803		event.getByLabel (jets_, jets);
804	+	if (!jets.product()) cout << "ERROR: could not get jets input collection" << endl;
805	+	}
806
807	<	if (find(objectsToGet.begin(), objectsToGet.end(), "muons") != objectsToGet.end())
807	>	if (find(objectsToGet.begin(), objectsToGet.end(), "muons") != objectsToGet.end()) {
808		event.getByLabel (muons_, muons);
809	+	if (!muons.product()) cout << "ERROR: could not get muons input collection" << endl;
810	+	}
811	+
812	+	if (find(objectsToGet.begin(), objectsToGet.end(), "secondary muons") != objectsToGet.end()) {
813	+	event.getByLabel (secMuons_, secMuons);
814	+	if (!secMuons.product()) cout << "ERROR: could not get secMuons input collection" << endl;
815	+	}
816
817	<	if (find(objectsToGet.begin(), objectsToGet.end(), "electrons") != objectsToGet.end())
817	>	if (find(objectsToGet.begin(), objectsToGet.end(), "electrons") != objectsToGet.end()) {
818		event.getByLabel (electrons_, electrons);
819	+	if (!electrons.product()) cout << "ERROR: could not get electrons input collection" << endl;
820	+	}
821
822	<	if (find(objectsToGet.begin(), objectsToGet.end(), "events") != objectsToGet.end())
822	>	if (find(objectsToGet.begin(), objectsToGet.end(), "events") != objectsToGet.end()) {
823		event.getByLabel (events_, events);
824	+	if (!events.product()) cout << "ERROR: could not get events input collection" << endl;
825	+	}
826
827	<	if (find(objectsToGet.begin(), objectsToGet.end(), "taus") != objectsToGet.end())
827	>	if (find(objectsToGet.begin(), objectsToGet.end(), "taus") != objectsToGet.end()) {
828		event.getByLabel (taus_, taus);
829	+	if (!taus.product()) cout << "ERROR: could not get taus input collection" << endl;
830	+	}
831
832	<	if (find(objectsToGet.begin(), objectsToGet.end(), "mets") != objectsToGet.end())
832	>	if (find(objectsToGet.begin(), objectsToGet.end(), "mets") != objectsToGet.end()) {
833		event.getByLabel (mets_, mets);
834	+	if (!mets.product()) cout << "ERROR: could not get mets input collection" << endl;
835	+	}
836
837	<	if (find(objectsToGet.begin(), objectsToGet.end(), "tracks") != objectsToGet.end())
837	>	if (find(objectsToGet.begin(), objectsToGet.end(), "tracks") != objectsToGet.end()) {
838		event.getByLabel (tracks_, tracks);
839	+	if (!tracks.product()) cout << "ERROR: could not get tracks input collection" << endl;
840	+	}
841
842	<	if (find(objectsToGet.begin(), objectsToGet.end(), "genjets") != objectsToGet.end())
842	>	if (find(objectsToGet.begin(), objectsToGet.end(), "genjets") != objectsToGet.end()) {
843		event.getByLabel (genjets_, genjets);
844	+	if (!genjets.product()) cout << "ERROR: could not get genjets input collection" << endl;
845	+	}
846
847	<	if (find(objectsToGet.begin(), objectsToGet.end(), "mcparticles") != objectsToGet.end())
847	>	if (find(objectsToGet.begin(), objectsToGet.end(), "mcparticles") != objectsToGet.end()) {
848		event.getByLabel (mcparticles_, mcparticles);
849	+	if (!mcparticles.product()) cout << "ERROR: could not get mcparticles input collection" << endl;
850	+	}
851
852	<	if (find(objectsToGet.begin(), objectsToGet.end(), "primaryvertexs") != objectsToGet.end())
852	>	if (find(objectsToGet.begin(), objectsToGet.end(), "primaryvertexs") != objectsToGet.end()) {
853		event.getByLabel (primaryvertexs_, primaryvertexs);
854	+	if (!primaryvertexs.product()) cout << "ERROR: could not get primaryvertexs input collection" << endl;
855	+	}
856
857	<	if (find(objectsToGet.begin(), objectsToGet.end(), "bxlumis") != objectsToGet.end())
857	>	if (find(objectsToGet.begin(), objectsToGet.end(), "bxlumis") != objectsToGet.end()) {
858		event.getByLabel (bxlumis_, bxlumis);
859	+	if (!bxlumis.product()) cout << "ERROR: could not get bxlumis input collection" << endl;
860	+	}
861
862	<	if (find(objectsToGet.begin(), objectsToGet.end(), "photons") != objectsToGet.end())
862	>	if (find(objectsToGet.begin(), objectsToGet.end(), "photons") != objectsToGet.end()) {
863		event.getByLabel (photons_, photons);
864	+	if (!photons.product()) cout << "ERROR: could not get photons input collection" << endl;
865	+	}
866
867	<	if (find(objectsToGet.begin(), objectsToGet.end(), "superclusters") != objectsToGet.end())
867	>	if (find(objectsToGet.begin(), objectsToGet.end(), "superclusters") != objectsToGet.end()) {
868		event.getByLabel (superclusters_, superclusters);
869	+	if (!superclusters.product()) cout << "ERROR: could not get superclusters input collection" << endl;
870	+	}
871
872		if (datasetType_ == "signalMC"){
873	<	if (find(objectsToGet.begin(), objectsToGet.end(), "stops") != objectsToGet.end())
873	>	if (find(objectsToGet.begin(), objectsToGet.end(), "stops") != objectsToGet.end()) {
874		event.getByLabel (stops_, stops);
875	+	if (!stops.product()) cout << "ERROR: could not get stops input collection" << endl;
876	+	}
877		}
878
879		if (useTrackCaloRhoCorr_) {
#	Line 657 \| Line 882 \| OSUAnalysis::analyze (const edm::Event &
882		// For description of rho values for different jet reconstruction algorithms, see
883		// https://twiki.cern.ch/twiki/bin/view/CMS/JetAlgorithms#Algorithms
884		event.getByLabel ("kt6CaloJets","rho", rhokt6CaloJetsHandle_);
885	+	if (!rhokt6CaloJetsHandle_.product()) cout << "ERROR: could not get kt6CaloJets input collection" << endl;
886		}
887
888		double masterScaleFactor = 1.0;
#	Line 664 \| Line 890 \| OSUAnalysis::analyze (const edm::Event &
890		//get pile-up event weight
891		if (doPileupReweighting_ && datasetType_ != "data") {
892		//for "data" datasets, the numTruePV is always set to -1
893	<	if (events->at(0).numTruePV < 0) cout << "WARNING[OSUAnalysis::analyze]: Event has numTruePV<0. Turning off pile-up reweighting." << endl;
894	<	else masterScaleFactor *= puWeight_->at (events->at (0).numTruePV);
893	>	if (events->at(0).numTruePV < 0 && isFirstEvent_) clog << "WARNING[OSUAnalysis::analyze]: Event has numTruePV<0. Turning off pile-up reweighting." << endl;
894	>	else masterScaleFactor *= puWeight_->at (events->at (0).numTruePV);
895		}
896
897		stopCTauScaleFactor_ = 1.0;
#	Line 675 \| Line 901 \| OSUAnalysis::analyze (const edm::Event &
901
902		//loop over all channels
903
904	+	auto_ptr<map<string, bool> > channelDecisions (new map<string, bool>);
905		for(uint currentChannelIndex = 0; currentChannelIndex != channels.size(); currentChannelIndex++){
906		channel currentChannel = channels.at(currentChannelIndex);
907	+	if (verbose_>1) clog << " Processing channel " << currentChannel.name << endl;
908
909		flagMap individualFlags;
910		counterMap passingCounter;
911		cumulativeFlags.clear ();
912
913	<	for (map<string, vector<float>>::iterator iter = BNTreeBranchVals_.begin();
914	<	iter != BNTreeBranchVals_.end(); iter++) {
913	>	for (map<string, vector<float>>::iterator iter = BNTreeBranchVals_.begin();
914	>	iter != BNTreeBranchVals_.end(); iter++) {
915		iter->second.clear(); // clear array
916		}
917
#	Line 696 \| Line 924 \| OSUAnalysis::analyze (const edm::Event &
924		//loop over all cuts
925		for(uint currentCutIndex = 0; currentCutIndex != currentChannel.cuts.size(); currentCutIndex++){
926		cut currentCut = currentChannel.cuts.at(currentCutIndex);
927	<	for(uint currentObjectIndex = 0; currentObjectIndex != objectsToCut.size(); currentObjectIndex++){
928	<	string currentObject = objectsToCut.at(currentObjectIndex);
927	>	if (verbose_>2) clog << " Processing cut, index: " << currentCutIndex << ", input collection: " << currentCut.inputCollection << ", name: " << currentCut.name << endl;
928	>
929	>	for(uint currentObjectIndex = 0; currentObjectIndex != objectsToFlag.size(); currentObjectIndex++){
930	>	string currentObject = objectsToFlag.at(currentObjectIndex);
931
932		//initialize maps to get ready to set cuts
933	<	individualFlags[currentObject].push_back (vector<bool> ());
934	<	cumulativeFlags[currentObject].push_back (vector<bool> ());
933	>	individualFlags[currentObject].push_back (vector<pair<bool,bool> > ());
934	>	cumulativeFlags[currentObject].push_back (vector<pair<bool,bool> > ());
935
936		}
707	–	for(uint currentObjectIndex = 0; currentObjectIndex != objectsToCut.size(); currentObjectIndex++){
708	–	string currentObject = objectsToCut.at(currentObjectIndex);
709	–
710	–	int flagsForPairCutsIndex = max(int(currentCutIndex-1),0);
937
938	<
939	<	if (currentObject == "jets") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,jets.product(),"jets");
940	<	else if(currentObject == "secondary jets") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,jets.product(),"secondary jets");
941	<	else if(currentObject == "muons") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,muons.product(),"muons");
942	<	else if(currentObject == "secondary muons") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,muons.product(),"secondary muons");
938	>	//set flags for all relevant objects
939	>	for(int currentObjectIndex = -1; currentObjectIndex != int(objectsToFlag.size()); currentObjectIndex++){
940	>	string currentObject;
941	>	if (currentObjectIndex < 0) currentObject = currentCut.inputCollection; // In the first loop, set the flags for the collection that the cut is acting on. That way other paired collections can access the correct flag for the current cut.
942	>	else currentObject = objectsToFlag.at(currentObjectIndex);
943	>	if (currentObjectIndex >= 0 && currentObject == currentCut.inputCollection) continue; // Flags have already been set for the inputCollection object, so should not be set again.
944	>
945	>	// single object collections
946	>	if (currentObject == "jets") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,jets.product(),"jets");
947	>	else if(currentObject == "secondary jets") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,jets.product(),"secondary jets");
948	>	else if(currentObject == "secondary photons") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,photons.product(),"secondary photons");
949	>	else if(currentObject == "muons") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,muons.product(),"muons");
950	>	else if(currentObject == "secondary muons") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,secMuons.product(),"secondary muons");
951		else if(currentObject == "secondary electrons") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,electrons.product(),"secondary electrons");
952	<	else if(currentObject == "electrons") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,electrons.product(),"electrons");
953	<	else if(currentObject == "events") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,events.product(),"events");
954	<	else if(currentObject == "taus") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,taus.product(),"taus");
955	<	else if(currentObject == "mets") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,mets.product(),"mets");
956	<	else if(currentObject == "tracks") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,tracks.product(),"tracks");
957	<	else if(currentObject == "genjets") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,genjets.product(),"genjets");
958	<	else if(currentObject == "mcparticles") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,mcparticles.product(),"mcparticles");
959	<	else if(currentObject == "primaryvertexs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,primaryvertexs.product(),"primaryvertexs");
960	<	else if(currentObject == "bxlumis") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,bxlumis.product(),"bxlumis");
961	<	else if(currentObject == "photons") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,photons.product(),"photons");
962	<	else if(currentObject == "superclusters") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,superclusters.product(),"superclusters");
963	<	else if(currentObject == "trigobjs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,trigobjs.product(),"trigobjs");
964	<
965	<
966	<
967	<	else if(currentObject == "muon-muon pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,muons.product(),muons.product(), \
968	<	cumulativeFlags.at("muons").at(flagsForPairCutsIndex), \
969	<	cumulativeFlags.at("muons").at(flagsForPairCutsIndex), \
970	<	"muon-muon pairs");
971	<
972	<	else if(currentObject == "muon-secondary muon pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,muons.product(),muons.product(), \
973	<	cumulativeFlags.at("muons").at(flagsForPairCutsIndex), \
974	<	cumulativeFlags.at("secondary muons").at(flagsForPairCutsIndex), \
975	<	"muon-secondary muon pairs");
976	<
977	<	else if(currentObject == "electron-secondary electron pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,electrons.product(),electrons.product(), \
978	<	cumulativeFlags.at("electrons").at(flagsForPairCutsIndex), \
979	<	cumulativeFlags.at("secondary electrons").at(flagsForPairCutsIndex), \
980	<	"electron-secondary electron pairs");
981	<
982	<	else if(currentObject == "electron-electron pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,electrons.product(),electrons.product(), \
983	<	cumulativeFlags.at("electrons").at(flagsForPairCutsIndex), \
984	<	cumulativeFlags.at("electrons").at(flagsForPairCutsIndex), \
985	<	"electron-electron pairs");
986	<	else if(currentObject == "electron-muon pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,electrons.product(),muons.product(), \
987	<	cumulativeFlags.at("electrons").at(flagsForPairCutsIndex), \
988	<	cumulativeFlags.at("muons").at(flagsForPairCutsIndex), \
989	<	"electron-muon pairs");
990	<	else if(currentObject == "jet-jet pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,jets.product(),jets.product(), \
991	<	cumulativeFlags.at("jets").at(flagsForPairCutsIndex), \
992	<	cumulativeFlags.at("jets").at(flagsForPairCutsIndex), \
993	<	"jet-jet pairs");
994	<	else if(currentObject == "electron-jet pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,electrons.product(),jets.product(), \
995	<	cumulativeFlags.at("electrons").at(flagsForPairCutsIndex), \
996	<	cumulativeFlags.at("jets").at(flagsForPairCutsIndex), \
997	<	"electron-jet pairs");
764	<	else if(currentObject == "muon-jet pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,muons.product(),jets.product(), \
765	<	cumulativeFlags.at("muons").at(flagsForPairCutsIndex), \
766	<	cumulativeFlags.at("jets").at(flagsForPairCutsIndex), \
767	<	"muon-jet pairs");
768	<	else if(currentObject == "track-event pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,tracks.product(),events.product(),
769	<	cumulativeFlags.at("tracks").at(flagsForPairCutsIndex),
770	<	cumulativeFlags.at("events").at(flagsForPairCutsIndex),
771	<	"track-event pairs");
772	<	else if(currentObject == "electron-track pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,electrons.product(),tracks.product(),
773	<	cumulativeFlags.at("electrons").at(flagsForPairCutsIndex),
774	<	cumulativeFlags.at("tracks").at(flagsForPairCutsIndex),
775	<	"electron-track pairs");
776	<	else if(currentObject == "muon-track pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,muons.product(),tracks.product(),
777	<	cumulativeFlags.at("muons").at(flagsForPairCutsIndex),
778	<	cumulativeFlags.at("tracks").at(flagsForPairCutsIndex),
779	<	"muon-track pairs");
780	<	else if(currentObject == "muon-tau pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,muons.product(),taus.product(),
781	<	cumulativeFlags.at("muons").at(flagsForPairCutsIndex),
782	<	cumulativeFlags.at("taus").at(flagsForPairCutsIndex),
783	<	"muon-tau pairs");
784	<	else if(currentObject == "tau-tau pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,taus.product(),taus.product(),
785	<	cumulativeFlags.at("taus").at(flagsForPairCutsIndex),
786	<	cumulativeFlags.at("taus").at(flagsForPairCutsIndex),
787	<	"tau-tau pairs");
788	<	else if(currentObject == "tau-track pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,taus .product(),tracks.product(),
789	<	cumulativeFlags.at("taus").at(flagsForPairCutsIndex),
790	<	cumulativeFlags.at("tracks").at(flagsForPairCutsIndex),
791	<	"tau-track pairs");
792	<	else if(currentObject == "electron-trigobj pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,electrons.product(),trigobjs.product(),
793	<	cumulativeFlags.at("electrons").at(flagsForPairCutsIndex),
794	<	cumulativeFlags.at("trigobjs").at(flagsForPairCutsIndex),
795	<	"electron-trigobj pairs");
796	<	else if(currentObject == "muon-trigobj pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,muons.product(),trigobjs.product(),
797	<	cumulativeFlags.at("muons").at(flagsForPairCutsIndex),
798	<	cumulativeFlags.at("trigobjs").at(flagsForPairCutsIndex),
799	<	"muon-trigobj pairs");
952	>	else if(currentObject == "electrons") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,electrons.product(),"electrons");
953	>	else if(currentObject == "events") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,events.product(),"events");
954	>	else if(currentObject == "taus") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,taus.product(),"taus");
955	>	else if(currentObject == "mets") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,mets.product(),"mets");
956	>	else if(currentObject == "tracks") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,tracks.product(),"tracks");
957	>	else if(currentObject == "genjets") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,genjets.product(),"genjets");
958	>	else if(currentObject == "mcparticles") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,mcparticles.product(),"mcparticles");
959	>	else if(currentObject == "primaryvertexs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,primaryvertexs.product(),"primaryvertexs");
960	>	else if(currentObject == "bxlumis") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,bxlumis.product(),"bxlumis");
961	>	else if(currentObject == "photons") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,photons.product(),"photons");
962	>	else if(currentObject == "superclusters") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,superclusters.product(),"superclusters");
963	>	else if(currentObject == "trigobjs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,trigobjs.product(),"trigobjs");
964	>
965	>
966	>	// paired object collections
967	>	else if(currentObject == "muon-muon pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,muons.product(),muons.product(), "muon-muon pairs");
968	>	else if(currentObject == "muon-secondary muon pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,muons.product(),secMuons.product(), "muon-secondary muon pairs");
969	>
970	>	else if(currentObject == "muon-secondary photon pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,muons.product(),photons.product(), "muon-secondary photon pairs");
971	>	else if(currentObject == "muon-secondary jet pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,muons.product(),jets.product(), "muon-secondary jet pairs");
972	>	else if(currentObject == "photon-secondary jet pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,photons.product(),jets.product(), "photon-secondary jet pairs");
973	>	else if(currentObject == "electron-secondary jet pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,electrons.product(),jets.product(), "electron-secondary jet pairs");
974	>	else if(currentObject == "electron-secondary electron pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,electrons.product(),electrons.product(), "electron-secondary electron pairs");
975	>
976	>	else if(currentObject == "electron-electron pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,electrons.product(),electrons.product(), "electron-electron pairs");
977	>	else if(currentObject == "electron-muon pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,electrons.product(),muons.product(), "electron-muon pairs");
978	>	else if(currentObject == "jet-jet pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,jets.product(),jets.product(), "jet-jet pairs");
979	>	else if(currentObject == "jet-secondary jet pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,jets.product(),jets.product(), "jet-secondary jet pairs");
980	>	else if(currentObject == "electron-jet pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,electrons.product(),jets.product(), "electron-jet pairs");
981	>	else if(currentObject == "electron-photon pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,electrons.product(),photons.product(), "electron-photon pairs");
982	>	else if(currentObject == "photon-jet pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,photons.product(),jets.product(), "photon-jet pairs");
983	>	else if(currentObject == "muon-jet pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,muons.product(),jets.product(), "muon-jet pairs");
984	>	else if(currentObject == "muon-event pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,muons.product(),events.product(), "muon-event pairs");
985	>	else if(currentObject == "met-jet pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,mets.product(),jets.product(), "met-jet pairs");
986	>	else if(currentObject == "track-jet pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,tracks.product(),jets.product(), "track-jet pairs");
987	>	else if(currentObject == "muon-photon pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,muons.product(),photons.product(), "muon-photon pairs");
988	>	else if(currentObject == "track-event pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,tracks.product(),events.product(), "track-event pairs");
989	>	else if(currentObject == "electron-track pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,electrons.product(),tracks.product(),"electron-track pairs");
990	>	else if(currentObject == "muon-track pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,muons.product(),tracks.product(),"muon-track pairs");
991	>	else if(currentObject == "secondary muon-track pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,secMuons.product(),tracks.product(),"secondary muon-track pairs");
992	>	else if(currentObject == "muon-tau pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,muons.product(),taus.product(),"muon-tau pairs");
993	>	else if(currentObject == "tau-tau pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,taus.product(),taus.product(),"tau-tau pairs");
994	>	else if(currentObject == "tau-track pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,taus .product(),tracks.product(),"tau-track pairs");
995	>	else if(currentObject == "electron-trigobj pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,electrons.product(),trigobjs.product(),"electron-trigobj pairs");
996	>	else if(currentObject == "muon-trigobj pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,muons.product(),trigobjs.product(),"muon-trigobj pairs");
997	>	else if(currentObject == "electron-mcparticle pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,electrons.product(),mcparticles.product(),"electron-mcparticle pairs");
998
999		if(currentObject == "stops" && datasetType_ == "signalMC") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,stops.product(),"stops");
1000		}
1001
1002	+	}//end loop over all cuts
1003	+
1004
1005
806	–	}//end loop over all cuts
1006		//use cumulative flags to apply cuts at event level
1007	<
1007	>	vector<bool> eventPassedPreviousCuts; //a vector to store cumulative cut descisions after each cut.
1008		bool eventPassedAllCuts = true;
1009	<	//a vector to store cumulative cut descisions after each cut.
811	<	vector<bool> eventPassedPreviousCuts;
812	<	//apply trigger (true if none were specified)
813	<	eventPassedAllCuts = eventPassedAllCuts && triggerDecision;
1009	>	eventPassedAllCuts = eventPassedAllCuts && triggerDecision; //apply trigger (true if none were specified)
1010
1011		for(uint currentCutIndex = 0; currentCutIndex != currentChannel.cuts.size(); currentCutIndex++){
1012
1013		//loop over all objects and count how many passed the cumulative selection up to this point
1014		cut currentCut = currentChannel.cuts.at(currentCutIndex);
1015		int numberPassing = 0;
1016	+	int numberPassingPrev = 0; // number of objects that pass cuts up to the previous one
1017
1018		for (uint object = 0; object != cumulativeFlags.at(currentCut.inputCollection).at(currentCutIndex).size() ; object++){
1019	<	if(cumulativeFlags.at(currentCut.inputCollection).at(currentCutIndex).at(object)) numberPassing++;
1019	>	if(cumulativeFlags.at(currentCut.inputCollection).at(currentCutIndex).at(object).first) numberPassing++;
1020	>	}
1021	>	bool cutDecision;
1022	>	if (!currentCut.isVeto) {
1023	>	cutDecision = evaluateComparison(numberPassing,currentCut.eventComparativeOperator,currentCut.numberRequired);
1024	>	} else {
1025	>	int prevCutIndex = currentCutIndex - 1;
1026	>	if (prevCutIndex<0) {
1027	>	numberPassingPrev = cumulativeFlags.at(currentCut.inputCollection).at(currentCutIndex).size(); // count all objects in collection if cut is the first
1028	>	} else {
1029	>	for (uint object = 0; object != cumulativeFlags.at(currentCut.inputCollection).at(prevCutIndex).size() ; object++){
1030	>	if (cumulativeFlags.at(currentCut.inputCollection).at(prevCutIndex).at(object).first) {
1031	>	numberPassingPrev++;
1032	>	if (verbose_>1) clog << " object passed previous cut" << endl;
1033	>	}
1034	>	}
1035	>	}
1036	>	int numberFailCut = numberPassingPrev - numberPassing;
1037	>	cutDecision = evaluateComparison(numberFailCut,currentCut.eventComparativeOperator,currentCut.numberRequired);
1038		}
1039	<	bool cutDecision = evaluateComparison(numberPassing,currentCut.eventComparativeOperator,currentCut.numberRequired);
1039	>
1040		cutFlows_.at(currentChannelIndex)->at (currentCut.name) = cutDecision;
1041		eventPassedAllCuts = eventPassedAllCuts && cutDecision;
1042		eventPassedPreviousCuts.push_back(eventPassedAllCuts);
1043	+	if (verbose_>1) clog << " Event passed cuts up to cut index " << currentCutIndex << endl;
1044	+
1045		}
1046	+	//applying all appropriate scale factors
1047		double scaleFactor = masterScaleFactor;
1048	+	muonScaleFactor_ = electronScaleFactor_ = bTagScaleFactor_ = 1.0;
1049
831	–	muonScaleFactor_ = electronScaleFactor_ = 1.0;
1050		if(applyLeptonSF_ && datasetType_ != "data"){
1051	<	if(cumulativeFlags.find ("muons") != cumulativeFlags.end ()){
1052	<	vector<bool> muonFlags;
1051	>	//only apply SFs if we've cut on this object
1052	>	if(find(objectsToCut.begin(),objectsToCut.end(),"muons") != objectsToCut.end ()){
1053	>	flagPair muonFlags;
1054	>	//get the last valid flags in the flag map
1055		for (int i = cumulativeFlags.at("muons").size() - 1; i >= 0; i--){
1056		if (cumulativeFlags.at("muons").at(i).size()){
1057		muonFlags = cumulativeFlags.at("muons").at(i);
1058		break;
1059		}
1060		}
1061	+	//apply the weight for each of those objects
1062		for (uint muonIndex = 0; muonIndex != muonFlags.size(); muonIndex++){
1063	<	if(!muonFlags.at(muonIndex)) continue;
1063	>	if(!muonFlags.at(muonIndex).second) continue;
1064		muonScaleFactor_ *= muonSFWeight_->at (muons->at(muonIndex).eta);
1065		}
1066		}
1067	<	if(cumulativeFlags.find ("electrons") != cumulativeFlags.end ()){
1068	<	vector<bool> electronFlags;
1067	>	//only apply SFs if we've cut on this object
1068	>	if(find(objectsToCut.begin(),objectsToCut.end(),"electrons") != objectsToCut.end ()){
1069	>	flagPair electronFlags;
1070	>	//get the last valid flags in the flag map
1071		for (int i = cumulativeFlags.at("electrons").size() - 1; i >= 0; i--){
1072		if (cumulativeFlags.at("electrons").at(i).size()){
1073		electronFlags = cumulativeFlags.at("electrons").at(i);
1074		break;
1075		}
1076		}
1077	+	//apply the weight for each of those objects
1078		for (uint electronIndex = 0; electronIndex != electronFlags.size(); electronIndex++){
1079	<	if(!electronFlags.at(electronIndex)) continue;
1079	>	if(!electronFlags.at(electronIndex).second) continue;
1080		electronScaleFactor_ *= electronSFWeight_->at (electrons->at(electronIndex).eta, electrons->at(electronIndex).pt);
1081		}
1082		}
1083		}
1084	+	if(applyBtagSF_ && datasetType_ != "data"){
1085	+	//only apply SFs if we've cut on this object
1086	+	if(find(objectsToCut.begin(),objectsToCut.end(),"jets") != objectsToCut.end ()){
1087	+	flagPair jetFlags;
1088	+	vector<double> jetSFs;
1089	+	//get the last valid flags in the flag map
1090	+	for (int i = cumulativeFlags.at("jets").size() - 1; i >= 0; i--){
1091	+	if (cumulativeFlags.at("jets").at(i).size()){
1092	+	jetFlags = cumulativeFlags.at("jets").at(i);
1093	+	break;
1094	+	}
1095	+	}
1096	+	//apply the weight for each of those objects
1097	+	for (uint jetIndex = 0; jetIndex != jetFlags.size(); jetIndex++){
1098	+	if(!jetFlags.at(jetIndex).second) continue;
1099	+	double jetSFTmp = bTagSFWeight_->sflookup(jets->at(jetIndex).btagCombinedSecVertex, jets->at(jetIndex).pt, jets->at(jetIndex).flavour, jets->at(jetIndex).eta);
1100	+	jetSFs.push_back(jetSFTmp);
1101	+	}
1102	+	bTagScaleFactor_ *= bTagSFWeight_->weight( jetSFs, minBtag_);
1103	+	}
1104	+	}
1105		scaleFactor *= muonScaleFactor_;
1106		scaleFactor *= electronScaleFactor_;
1107	<
1107	>	scaleFactor *= bTagScaleFactor_;
1108		cutFlows_.at(currentChannelIndex)->fillCutFlow(scaleFactor);
1109	+	if (verbose_>1) clog << " Scale factors applied: "
1110	+	<< " muonScaleFactor_ = " << muonScaleFactor_
1111	+	<< ", electronScaleFactor_ = " << electronScaleFactor_
1112	+	<< ", bTagScaleFactor_ = " << bTagScaleFactor_
1113	+	<< ", total scale factor = " << scaleFactor
1114	+	<< endl;
1115
1116	<	if (printEventInfo_) {
1116	>
1117	>	if (printEventInfo_ && eventPassedAllCuts) {
1118		// Write information about event to screen, for testing purposes.
1119	<	cout << "Event passed all cuts in channel " << currentChannel.name
1120	<	<< ": run=" << events->at(0).run
1121	<	<< " lumi=" << events->at(0).lumi
1122	<	<< " event=" << events->at(0).evt
1119	>	clog << "Event passed all cuts in channel " << currentChannel.name
1120	>	<< ": run:lumi:evt= " << events->at(0).run
1121	>	<< ":" << events->at(0).lumi
1122	>	<< ":" << events->at(0).evt
1123		<< endl;
1124	+	if (findEventsLog) {
1125	+	(*findEventsLog) << events->at(0).run
1126	+	<< ":" << events->at(0).lumi
1127	+	<< ":" << events->at(0).evt << endl;
1128	+	}
1129	+
1130		}
1131
1132
1133		//filling histograms
1134	<	for(uint currentCut = 0; currentCut != oneDHists_.at(currentChannelIndex).size(); currentCut++){//loop over all the directories in each channel.
1134	>	for(uint currentCut = 0; currentCut != oneDHists_.at(currentChannelIndex).size(); currentCut++){//loop over all the cuts in each channel; if GetPlotsAfterEachCut_ is false, only the last cut will be used.
1135	>
1136	>	if (verbose_>2) clog << " Filling histograms for currentcut = " << currentCut << endl;
1137	>
1138		uint currentDir;
1139		if (!GetPlotsAfterEachCut_) { currentDir = currentChannel.cuts.size() - oneDHists_.at(currentChannelIndex).size(); } //if GetPlotsAfterEachCut_ is false, set currentDir point to the last cut.
1140		else{
1141	<	currentDir = currentCut;
1141	>	currentDir = currentCut;
1142		}
1143	+
1144	+
1145		if(eventPassedPreviousCuts.at(currentDir)){
1146
884	–	// Assign BNTree variables
885	–	for (uint iBranch = 0; iBranch != treeBranches_.size(); iBranch++) {
886	–	BranchSpecs brSpecs = treeBranches_.at(iBranch);
887	–	string coll = brSpecs.inputCollection;
888	–	if (cumulativeFlags.count(coll) == 0) cout << "Error: no flags found for collection: " << coll << ", will cause a seg fault" << endl;
889	–
890	–	if (coll == "jets") assignTreeBranch(brSpecs,jets.product(), cumulativeFlags.at(coll).at(currentDir));
891	–	else if(coll == "secondary jets") assignTreeBranch(brSpecs,jets.product(), cumulativeFlags.at(coll).at(currentDir));
892	–	else if(coll == "muons") assignTreeBranch(brSpecs,muons.product(), cumulativeFlags.at(coll).at(currentDir));
893	–	else if(coll == "secondary muons") assignTreeBranch(brSpecs,muons.product(), cumulativeFlags.at(coll).at(currentDir));
894	–	else if(coll == "electrons") assignTreeBranch(brSpecs,electrons.product(), cumulativeFlags.at(coll).at(currentDir));
895	–	else if(coll == "secondary electrons") assignTreeBranch(brSpecs,electrons.product(), cumulativeFlags.at(coll).at(currentDir));
896	–	else if(coll == "events") assignTreeBranch(brSpecs,events.product(), cumulativeFlags.at(coll).at(currentDir));
897	–	else if(coll == "taus") assignTreeBranch(brSpecs,taus.product(), cumulativeFlags.at(coll).at(currentDir));
898	–	else if(coll == "mets") assignTreeBranch(brSpecs,mets.product(), cumulativeFlags.at(coll).at(currentDir));
899	–	else if(coll == "tracks") assignTreeBranch(brSpecs,tracks.product(), cumulativeFlags.at(coll).at(currentDir));
900	–	else if(coll == "genjets") assignTreeBranch(brSpecs,genjets.product(), cumulativeFlags.at(coll).at(currentDir));
901	–	else if(coll == "mcparticles") assignTreeBranch(brSpecs,mcparticles.product(), cumulativeFlags.at(coll).at(currentDir));
902	–	else if(coll == "primaryvertexs") assignTreeBranch(brSpecs,primaryvertexs.product(),cumulativeFlags.at(coll).at(currentDir));
903	–	else if(coll == "bxlumis") assignTreeBranch(brSpecs,bxlumis.product(), cumulativeFlags.at(coll).at(currentDir));
904	–	else if(coll == "photons") assignTreeBranch(brSpecs,photons.product(), cumulativeFlags.at(coll).at(currentDir));
905	–	else if(coll == "superclusters") assignTreeBranch(brSpecs,superclusters.product(), cumulativeFlags.at(coll).at(currentDir));
906	–	else if(coll == "trigobjs") assignTreeBranch(brSpecs,trigobjs.product(), cumulativeFlags.at(coll).at(currentDir));
907	–	else if(coll == "stops"
908	–	&& datasetType_ == "signalMC") assignTreeBranch(brSpecs,stops.product(), cumulativeFlags.at(coll).at(currentDir));
909	–	} // end loop over branches
910	–
1147		for (uint histogramIndex = 0; histogramIndex != histograms.size(); histogramIndex++){
1148		histogram currentHistogram = histograms.at(histogramIndex);
1149
1150	<	if (cumulativeFlags.count(currentHistogram.inputCollection) == 0) cout << "Error: no flags found for collection: " << currentHistogram.inputCollection << ", will cause a seg fault" << endl;
1150	>	if (cumulativeFlags.count(currentHistogram.inputCollection) == 0) clog << "Error: no flags found for collection: " << currentHistogram.inputCollection << ", will cause a seg fault" << endl;
1151
1152	<	if(currentHistogram.inputVariables.size() == 1){
1153	<	TH1D* histo;
1154	<	histo = oneDHists_.at(currentChannelIndex).at(currentCut).at(currentHistogram.name);
1152	>	if (verbose_>1) clog << " Filling histogram " << currentHistogram.name << " for collection " << currentHistogram.inputCollection << endl;
1153	>
1154	>	if(currentHistogram.inputVariables.size() == 1){
1155	>	TH1D* histo;
1156	>	histo = oneDHists_.at(currentChannelIndex).at(currentCut).at(currentHistogram.name);
1157		if (currentHistogram.inputCollection == "jets") fill1DHistogram(histo,currentHistogram,jets.product(),cumulativeFlags.at("jets").at(currentDir),scaleFactor);
1158	<	else if(currentHistogram.inputCollection == "secondary jets") fill1DHistogram(histo,currentHistogram,jets.product(),cumulativeFlags.at("secondary jets").at(currentDir),scaleFactor);
1159	<	else if(currentHistogram.inputCollection == "muons") fill1DHistogram(histo,currentHistogram,muons.product(),cumulativeFlags.at("muons").at(currentDir),scaleFactor);
1160	<	else if(currentHistogram.inputCollection == "secondary muons") fill1DHistogram(histo,currentHistogram,muons.product(),cumulativeFlags.at("secondary muons").at(currentDir),scaleFactor);
1161	<	else if(currentHistogram.inputCollection == "secondary electrons") fill1DHistogram(histo,currentHistogram,electrons.product(),cumulativeFlags.at("secondary electrons").at(currentDir),scaleFactor);
1162	<	else if(currentHistogram.inputCollection == "muon-muon pairs") fill1DHistogram(histo,currentHistogram,muons.product(),muons.product(), \
1163	<	cumulativeFlags.at("muons").at(currentDir),cumulativeFlags.at("muons").at(currentDir), \
1164	<	cumulativeFlags.at("muon-muon pairs").at(currentDir),scaleFactor);
1165	<	else if(currentHistogram.inputCollection == "muon-secondary muon pairs") fill1DHistogram(histo,currentHistogram,muons.product(),muons.product(), \
1166	<	cumulativeFlags.at("muons").at(currentDir),cumulativeFlags.at("secondary muons").at(currentDir), \
1167	<	cumulativeFlags.at("muon-secondary muon pairs").at(currentDir),scaleFactor);
1168	<	else if(currentHistogram.inputCollection == "electrons") fill1DHistogram(histo,currentHistogram,electrons.product(),cumulativeFlags.at("electrons").at(currentDir),scaleFactor);
1169	<	else if(currentHistogram.inputCollection == "electron-electron pairs") fill1DHistogram(histo,currentHistogram,electrons.product(),electrons.product(),\
1170	<	cumulativeFlags.at("electrons").at(currentDir),cumulativeFlags.at("electrons").at(currentDir),\
1171	<	cumulativeFlags.at("electron-electron pairs").at(currentDir),scaleFactor);
1172	<	else if(currentHistogram.inputCollection == "jet-jet pairs") fill1DHistogram(histo,currentHistogram,jets.product(),jets.product(),\
1173	<	cumulativeFlags.at("jets").at(currentDir),cumulativeFlags.at("jets").at(currentDir),\
1174	<	cumulativeFlags.at("jet-jet pairs").at(currentDir),scaleFactor);
1175	<	else if(currentHistogram.inputCollection == "electron-secondary electron pairs") fill1DHistogram(histo,currentHistogram,electrons.product(),electrons.product(), \
1176	<	cumulativeFlags.at("electrons").at(currentDir),cumulativeFlags.at("secondary electrons").at(currentDir), \
1177	<	cumulativeFlags.at("electron-secondary electron pairs").at(currentDir),scaleFactor);
1178	<	else if(currentHistogram.inputCollection == "electron-muon pairs") fill1DHistogram(histo,currentHistogram, electrons.product(),muons.product(), \
1179	<	cumulativeFlags.at("electrons").at(currentDir),cumulativeFlags.at("muons").at(currentDir),
1180	<	cumulativeFlags.at("electron-muon pairs").at(currentDir),scaleFactor);
1181	<	else if(currentHistogram.inputCollection == "electron-jet pairs") fill1DHistogram(histo,currentHistogram, electrons.product(),jets.product(), \
1182	<	cumulativeFlags.at("electrons").at(currentDir),cumulativeFlags.at("jets").at(currentDir),
1183	<	cumulativeFlags.at("electron-jet pairs").at(currentDir),scaleFactor);
1184	<	else if(currentHistogram.inputCollection == "muon-jet pairs") fill1DHistogram(histo,currentHistogram, muons.product(),jets.product(), \
1185	<	cumulativeFlags.at("muons").at(currentDir),cumulativeFlags.at("jets").at(currentDir),
1186	<	cumulativeFlags.at("muon-jet pairs").at(currentDir),scaleFactor);
1187	<	else if(currentHistogram.inputCollection == "electron-track pairs") fill1DHistogram(histo,currentHistogram, electrons.product(),tracks.product(),
1188	<	cumulativeFlags.at("electrons").at(currentDir),cumulativeFlags.at("tracks").at(currentDir),
1189	<	cumulativeFlags.at("electron-track pairs").at(currentDir),scaleFactor);
1190	<	else if(currentHistogram.inputCollection == "muon-track pairs") fill1DHistogram(histo,currentHistogram, muons.product(),tracks.product(),
1191	<	cumulativeFlags.at("muons").at(currentDir),cumulativeFlags.at("tracks").at(currentDir),
1192	<	cumulativeFlags.at("muon-track pairs").at(currentDir),scaleFactor);
1193	<	else if(currentHistogram.inputCollection == "muon-tau pairs") fill1DHistogram(histo,currentHistogram, muons.product(),taus.product(),
1194	<	cumulativeFlags.at("muons").at(currentDir),cumulativeFlags.at("taus").at(currentDir),
1195	<	cumulativeFlags.at("muon-tau pairs").at(currentDir),scaleFactor);
1196	<	else if(currentHistogram.inputCollection == "tau-tau pairs") fill1DHistogram(histo,currentHistogram, taus.product(),taus.product(),
1197	<	cumulativeFlags.at("taus").at(currentDir),cumulativeFlags.at("taus").at(currentDir),
1198	<	cumulativeFlags.at("tau-tau pairs").at(currentDir),scaleFactor);
1199	<	else if(currentHistogram.inputCollection == "tau-track pairs") fill1DHistogram(histo,currentHistogram, taus.product(),tracks.product(),
1200	<	cumulativeFlags.at("taus").at(currentDir),cumulativeFlags.at("tracks").at(currentDir),
1201	<	cumulativeFlags.at("tau-track pairs").at(currentDir),scaleFactor);
1202	<	else if(currentHistogram.inputCollection == "electron-trigobj pairs") fill1DHistogram(histo,currentHistogram, electrons.product(),trigobjs.product(),
1203	<	cumulativeFlags.at("electrons").at(currentDir),cumulativeFlags.at("trigobjs").at(currentDir),
1204	<	cumulativeFlags.at("electron-trigobj pairs").at(currentDir),scaleFactor);
1205	<	else if(currentHistogram.inputCollection == "muon-trigobj pairs") fill1DHistogram(histo,currentHistogram, muons.product(),trigobjs.product(),
1206	<	cumulativeFlags.at("muons").at(currentDir),cumulativeFlags.at("trigobjs").at(currentDir),
1207	<	cumulativeFlags.at("muon-trigobj pairs").at(currentDir),scaleFactor);
1208	<
1209	<	else if(currentHistogram.inputCollection == "events") fill1DHistogram(histo,currentHistogram,events.product(),cumulativeFlags.at("events").at(currentDir),scaleFactor);
1210	<	else if(currentHistogram.inputCollection == "taus") fill1DHistogram(histo,currentHistogram,taus.product(),cumulativeFlags.at("taus").at(currentDir),scaleFactor);
1211	<	else if(currentHistogram.inputCollection == "mets") fill1DHistogram(histo,currentHistogram,mets.product(),cumulativeFlags.at("mets").at(currentDir),scaleFactor);
1212	<	else if(currentHistogram.inputCollection == "tracks") fill1DHistogram(histo,currentHistogram,tracks.product(),cumulativeFlags.at("tracks").at(currentDir),scaleFactor);
1213	<	else if(currentHistogram.inputCollection == "genjets") fill1DHistogram(histo,currentHistogram,genjets.product(),cumulativeFlags.at("genjets").at(currentDir),scaleFactor);
1214	<	else if(currentHistogram.inputCollection == "mcparticles") fill1DHistogram(histo,currentHistogram,mcparticles.product(),cumulativeFlags.at("mcparticles").at(currentDir),scaleFactor);
1215	<	else if(currentHistogram.inputCollection == "primaryvertexs") fill1DHistogram(histo,currentHistogram,primaryvertexs.product(),cumulativeFlags.at("primaryvertexs").at(currentDir),scaleFactor);
1216	<	else if(currentHistogram.inputCollection == "bxlumis") fill1DHistogram(histo,currentHistogram,bxlumis.product(),cumulativeFlags.at("bxlumis").at(currentDir),scaleFactor);
1217	<	else if(currentHistogram.inputCollection == "photons") fill1DHistogram(histo,currentHistogram,photons.product(),cumulativeFlags.at("photons").at(currentDir),scaleFactor);
1218	<	else if(currentHistogram.inputCollection == "superclusters") fill1DHistogram(histo,currentHistogram,superclusters.product(),cumulativeFlags.at("superclusters").at(currentDir),scaleFactor);
1219	<	else if(currentHistogram.inputCollection == "trigobjs") fill1DHistogram(histo,currentHistogram,trigobjs.product(),cumulativeFlags.at("trigobjs").at(currentDir),scaleFactor);
1220	<	else if(currentHistogram.inputCollection == "stops" && datasetType_ == "signalMC") fill1DHistogram(histo,currentHistogram,stops.product(),cumulativeFlags.at("stops").at(currentDir),scaleFactor);
1221	<	}
1222	<	else if(currentHistogram.inputVariables.size() == 2){
1223	<	TH2D* histo;
1224	<	histo = twoDHists_.at(currentChannelIndex).at(currentCut).at(currentHistogram.name);
1225	<	if (currentHistogram.inputCollection == "jets") fill2DHistogram(histo,currentHistogram,jets.product(),cumulativeFlags.at("jets").at(currentDir),scaleFactor);
1226	<	else if(currentHistogram.inputCollection == "secondary jets") fill2DHistogram(histo,currentHistogram,jets.product(),cumulativeFlags.at("secondary jets").at(currentDir),scaleFactor);
1227	<	else if(currentHistogram.inputCollection == "muons") fill2DHistogram(histo,currentHistogram,muons.product(),cumulativeFlags.at("muons").at(currentDir),scaleFactor);
1228	<	else if(currentHistogram.inputCollection == "secondary muons") fill2DHistogram(histo,currentHistogram,muons.product(),cumulativeFlags.at("secondary muons").at(currentDir),scaleFactor);
1229	<	else if(currentHistogram.inputCollection == "muon-muon pairs") fill2DHistogram(histo,currentHistogram,muons.product(),muons.product(), \
1230	<	cumulativeFlags.at("muons").at(currentDir),cumulativeFlags.at("muons").at(currentDir), \
1231	<	cumulativeFlags.at("muon-muon pairs").at(currentDir),scaleFactor);
1232	<	else if(currentHistogram.inputCollection == "muon-secondary muon pairs") fill2DHistogram(histo,currentHistogram,muons.product(),muons.product(), \
1233	<	cumulativeFlags.at("muons").at(currentDir),cumulativeFlags.at("secondary muons").at(currentDir), \
1234	<	cumulativeFlags.at("muon-secondary muon pairs").at(currentDir),scaleFactor);
1235	<	else if(currentHistogram.inputCollection == "electrons") fill2DHistogram(histo,currentHistogram,electrons.product(),cumulativeFlags.at("electrons").at(currentDir),scaleFactor);
1236	<	else if(currentHistogram.inputCollection == "secondary electrons") fill2DHistogram(histo,currentHistogram,electrons.product(),cumulativeFlags.at("secondary electrons").at(currentDir),scaleFactor);
1237	<	else if(currentHistogram.inputCollection == "electron-electron pairs") fill2DHistogram(histo,currentHistogram,electrons.product(),electrons.product(), \
1238	<	cumulativeFlags.at("electrons").at(currentDir),cumulativeFlags.at("electrons").at(currentDir), \
1239	<	cumulativeFlags.at("electron-electron pairs").at(currentDir),scaleFactor);
1240	<	else if(currentHistogram.inputCollection == "jet-jet pairs") fill2DHistogram(histo,currentHistogram,jets.product(),jets.product(), \
1241	<	cumulativeFlags.at("jets").at(currentDir),cumulativeFlags.at("jets").at(currentDir), \
1242	<	cumulativeFlags.at("jet-jet pairs").at(currentDir),scaleFactor);
1243	<	else if(currentHistogram.inputCollection == "electron-secondary electron pairs") fill2DHistogram(histo,currentHistogram,electrons.product(),electrons.product(), \
1244	<	cumulativeFlags.at("electrons").at(currentDir),cumulativeFlags.at("secondary electrons").at(currentDir), \
1245	<	cumulativeFlags.at("electron-secondary electron pairs").at(currentDir),scaleFactor);
1246	<	else if(currentHistogram.inputCollection == "electron-muon pairs") fill2DHistogram(histo,currentHistogram,electrons.product(),muons.product(), \
1247	<	cumulativeFlags.at("electrons").at(currentDir),cumulativeFlags.at("muons").at(currentDir), \
1248	<	cumulativeFlags.at("electron-muon pairs").at(currentDir),scaleFactor);
1249	<	else if(currentHistogram.inputCollection == "electron-jet pairs") fill2DHistogram(histo,currentHistogram,electrons.product(),jets.product(), \
1250	<	cumulativeFlags.at("electrons").at(currentDir),cumulativeFlags.at("jets").at(currentDir), \
1251	<	cumulativeFlags.at("electron-jet pairs").at(currentDir),scaleFactor);
1252	<	else if(currentHistogram.inputCollection == "muon-jet pairs") fill2DHistogram(histo,currentHistogram,muons.product(),jets.product(), \
1253	<	cumulativeFlags.at("muons").at(currentDir),cumulativeFlags.at("jets").at(currentDir), \
1254	<	cumulativeFlags.at("muon-jet pairs").at(currentDir),scaleFactor);
1255	<	else if(currentHistogram.inputCollection == "electron-track pairs") fill2DHistogram(histo,currentHistogram,electrons.product(),tracks.product(),
1256	<	cumulativeFlags.at("electrons").at(currentDir),cumulativeFlags.at("tracks").at(currentDir),
1257	<	cumulativeFlags.at("electron-track pairs").at(currentDir),scaleFactor);
1258	<	else if(currentHistogram.inputCollection == "muon-track pairs") fill2DHistogram(histo,currentHistogram,muons.product(),tracks.product(),
1259	<	cumulativeFlags.at("muons").at(currentDir),cumulativeFlags.at("tracks").at(currentDir),
1260	<	cumulativeFlags.at("muon-track pairs").at(currentDir),scaleFactor);
1261	<	else if(currentHistogram.inputCollection == "muon-tau pairs") fill2DHistogram(histo,currentHistogram,muons.product(),taus.product(),
1262	<	cumulativeFlags.at("muons").at(currentDir),cumulativeFlags.at("taus").at(currentDir),
1263	<	cumulativeFlags.at("muon-tau pairs").at(currentDir),scaleFactor);
1264	<	else if(currentHistogram.inputCollection == "tau-tau pairs") fill2DHistogram(histo,currentHistogram,taus.product(),taus.product(),
1265	<	cumulativeFlags.at("taus").at(currentDir),cumulativeFlags.at("taus").at(currentDir),
1266	<	cumulativeFlags.at("tau-tau pairs").at(currentDir),scaleFactor);
1267	<	else if(currentHistogram.inputCollection == "tau-track pairs") fill2DHistogram(histo,currentHistogram,taus.product(),tracks.product(),
1268	<	cumulativeFlags.at("taus").at(currentDir),cumulativeFlags.at("tracks").at(currentDir),
1269	<	cumulativeFlags.at("tau-track pairs").at(currentDir),scaleFactor);
1270	<	else if(currentHistogram.inputCollection == "electron-trigobj pairs") fill2DHistogram(histo,currentHistogram,electrons.product(),trigobjs.product(),
1271	<	cumulativeFlags.at("electrons").at(currentDir),cumulativeFlags.at("trigobjs").at(currentDir),
1272	<	cumulativeFlags.at("electron-trigobj pairs").at(currentDir),scaleFactor);
1273	<	else if(currentHistogram.inputCollection == "muon-trigobj pairs") fill2DHistogram(histo,currentHistogram,muons.product(),trigobjs.product(),
1274	<	cumulativeFlags.at("muons").at(currentDir),cumulativeFlags.at("trigobjs").at(currentDir),
1275	<	cumulativeFlags.at("muon-trigobj pairs").at(currentDir),scaleFactor);
1276	<	else if(currentHistogram.inputCollection == "events") fill2DHistogram(histo,currentHistogram,events.product(),cumulativeFlags.at("events").at(currentDir),scaleFactor);
1277	<	else if(currentHistogram.inputCollection == "taus") fill2DHistogram(histo,currentHistogram,taus.product(),cumulativeFlags.at("taus").at(currentDir),scaleFactor);
1278	<	else if(currentHistogram.inputCollection == "mets") fill2DHistogram(histo,currentHistogram,mets.product(),cumulativeFlags.at("mets").at(currentDir),scaleFactor);
1279	<	else if(currentHistogram.inputCollection == "tracks") fill2DHistogram(histo,currentHistogram,tracks.product(),cumulativeFlags.at("tracks").at(currentDir),scaleFactor);
1280	<	else if(currentHistogram.inputCollection == "track-event pairs") fill2DHistogram(histo,currentHistogram,tracks.product(),events.product(),
1281	<	cumulativeFlags.at("tracks").at(currentDir),cumulativeFlags.at("events").at(currentDir),
1282	<	cumulativeFlags.at("track-event pairs").at(currentDir),scaleFactor);
1283	<	else if(currentHistogram.inputCollection == "genjets") fill2DHistogram(histo,currentHistogram,genjets.product(),cumulativeFlags.at("genjets").at(currentDir),scaleFactor);
1284	<	else if(currentHistogram.inputCollection == "mcparticles") fill2DHistogram(histo,currentHistogram,mcparticles.product(),cumulativeFlags.at("mcparticles").at(currentDir),scaleFactor);
1285	<	else if(currentHistogram.inputCollection == "primaryvertexs") fill2DHistogram(histo,currentHistogram,primaryvertexs.product(),cumulativeFlags.at("primaryvertexs").at(currentDir),scaleFactor);
1286	<	else if(currentHistogram.inputCollection == "bxlumis") fill2DHistogram(histo,currentHistogram,bxlumis.product(),cumulativeFlags.at("bxlumis").at(currentDir),scaleFactor);
1287	<	else if(currentHistogram.inputCollection == "photons") fill2DHistogram(histo,currentHistogram,photons.product(),cumulativeFlags.at("photons").at(currentDir),scaleFactor);
1288	<	else if(currentHistogram.inputCollection == "superclusters") fill2DHistogram(histo,currentHistogram,superclusters.product(),cumulativeFlags.at("superclusters").at(currentDir),scaleFactor);
1289	<	else if(currentHistogram.inputCollection == "trigobjs") fill2DHistogram(histo,currentHistogram,trigobjs.product(),cumulativeFlags.at("trigobjs").at(currentDir),scaleFactor);
1290	<	else if(currentHistogram.inputCollection == "stops" && datasetType_ == "signalMC") fill2DHistogram(histo,currentHistogram,stops.product(),cumulativeFlags.at("stops").at(currentDir),scaleFactor);
1291	<	}
1292	<
1293	<	}
1158	>	else if(currentHistogram.inputCollection == "secondary jets") fill1DHistogram(histo,currentHistogram,jets.product(),cumulativeFlags.at("secondary jets").at(currentDir),scaleFactor);
1159	>	else if(currentHistogram.inputCollection == "secondary photons") fill1DHistogram(histo,currentHistogram,photons.product(),cumulativeFlags.at("secondary photons").at(currentDir),scaleFactor);
1160	>	else if(currentHistogram.inputCollection == "muons") fill1DHistogram(histo,currentHistogram,muons.product(),cumulativeFlags.at("muons").at(currentDir),scaleFactor);
1161	>	else if(currentHistogram.inputCollection == "secondary muons") fill1DHistogram(histo,currentHistogram,secMuons.product(),cumulativeFlags.at("secondary muons").at(currentDir),scaleFactor);
1162	>	else if(currentHistogram.inputCollection == "secondary electrons") fill1DHistogram(histo,currentHistogram,electrons.product(),cumulativeFlags.at("secondary electrons").at(currentDir),scaleFactor);
1163	>	else if(currentHistogram.inputCollection == "muon-muon pairs") fill1DHistogram(histo,currentHistogram,muons.product(),muons.product(),
1164	>	cumulativeFlags.at("muon-muon pairs").at(currentDir),scaleFactor);
1165	>	else if(currentHistogram.inputCollection == "muon-secondary muon pairs") fill1DHistogram(histo,currentHistogram,muons.product(),secMuons.product(),
1166	>	cumulativeFlags.at("muon-secondary muon pairs").at(currentDir),scaleFactor);
1167	>	else if(currentHistogram.inputCollection == "muon-secondary photon pairs") fill1DHistogram(histo,currentHistogram,muons.product(),photons.product(),
1168	>	cumulativeFlags.at("muon-secondary photon pairs").at(currentDir),scaleFactor);
1169	>	else if(currentHistogram.inputCollection == "muon-secondary jet pairs") fill1DHistogram(histo,currentHistogram,muons.product(),jets.product(),
1170	>	cumulativeFlags.at("muon-secondary jet pairs").at(currentDir),scaleFactor);
1171	>	else if(currentHistogram.inputCollection == "photon-secondary jet pairs") fill1DHistogram(histo,currentHistogram,photons.product(),jets.product(),
1172	>	cumulativeFlags.at("photon-secondary jet pairs").at(currentDir),scaleFactor);
1173	>	else if(currentHistogram.inputCollection == "electron-secondary jet pairs") fill1DHistogram(histo,currentHistogram,electrons.product(),jets.product(),
1174	>	cumulativeFlags.at("electron-secondary jet pairs").at(currentDir),scaleFactor);
1175	>
1176	>	else if(currentHistogram.inputCollection == "electrons") fill1DHistogram(histo,currentHistogram,electrons.product(),cumulativeFlags.at("electrons").at(currentDir),scaleFactor);
1177	>	else if(currentHistogram.inputCollection == "electron-electron pairs") fill1DHistogram(histo,currentHistogram,electrons.product(),electrons.product(),
1178	>	cumulativeFlags.at("electron-electron pairs").at(currentDir),scaleFactor);
1179	>	else if(currentHistogram.inputCollection == "jet-jet pairs") fill1DHistogram(histo,currentHistogram,jets.product(),jets.product(),
1180	>	cumulativeFlags.at("jet-jet pairs").at(currentDir),scaleFactor);
1181	>	else if(currentHistogram.inputCollection == "jet-secondary jet pairs") fill1DHistogram(histo,currentHistogram,jets.product(),jets.product(),
1182	>	cumulativeFlags.at("jet-secondary jet pairs").at(currentDir),scaleFactor);
1183	>
1184	>	else if(currentHistogram.inputCollection == "electron-secondary electron pairs") fill1DHistogram(histo,currentHistogram,electrons.product(),electrons.product(),
1185	>	cumulativeFlags.at("electron-secondary electron pairs").at(currentDir),scaleFactor);
1186	>	else if(currentHistogram.inputCollection == "electron-muon pairs") fill1DHistogram(histo,currentHistogram, electrons.product(),muons.product(),
1187	>	cumulativeFlags.at("electron-muon pairs").at(currentDir),scaleFactor);
1188	>	else if(currentHistogram.inputCollection == "electron-jet pairs") fill1DHistogram(histo,currentHistogram, electrons.product(),jets.product(),
1189	>	cumulativeFlags.at("electron-jet pairs").at(currentDir),scaleFactor);
1190	>	else if(currentHistogram.inputCollection == "photon-jet pairs") fill1DHistogram(histo,currentHistogram, photons.product(),jets.product(),
1191	>	cumulativeFlags.at("photon-jet pairs").at(currentDir),scaleFactor);
1192	>	else if(currentHistogram.inputCollection == "muon-jet pairs") fill1DHistogram(histo,currentHistogram, muons.product(),jets.product(),
1193	>	cumulativeFlags.at("muon-jet pairs").at(currentDir),scaleFactor);
1194	>	else if(currentHistogram.inputCollection == "muon-event pairs") fill1DHistogram(histo,currentHistogram, muons.product(),events.product(),
1195	>	cumulativeFlags.at("muon-event pairs").at(currentDir),scaleFactor);
1196	>	else if(currentHistogram.inputCollection == "met-jet pairs") fill1DHistogram(histo,currentHistogram, mets.product(),jets.product(),
1197	>	cumulativeFlags.at("met-jet pairs").at(currentDir),scaleFactor);
1198	>	else if(currentHistogram.inputCollection == "track-jet pairs") fill1DHistogram(histo,currentHistogram,tracks.product(),jets.product(),
1199	>	cumulativeFlags.at("track-jet pairs").at(currentDir),scaleFactor);
1200	>	else if(currentHistogram.inputCollection == "muon-photon pairs") fill1DHistogram(histo,currentHistogram, muons.product(),photons.product(),
1201	>	cumulativeFlags.at("muon-photon pairs").at(currentDir),scaleFactor);
1202	>	else if(currentHistogram.inputCollection == "electron-photon pairs") fill1DHistogram(histo,currentHistogram, electrons.product(),photons.product(),
1203	>	cumulativeFlags.at("electron-photon pairs").at(currentDir),scaleFactor);
1204	>	else if(currentHistogram.inputCollection == "electron-track pairs") fill1DHistogram(histo,currentHistogram, electrons.product(),tracks.product(),
1205	>	cumulativeFlags.at("electron-track pairs").at(currentDir),scaleFactor);
1206	>	else if(currentHistogram.inputCollection == "muon-track pairs") fill1DHistogram(histo,currentHistogram, muons.product(),tracks.product(),
1207	>	cumulativeFlags.at("muon-track pairs").at(currentDir),scaleFactor);
1208	>	else if(currentHistogram.inputCollection == "secondary muon-track pairs") fill1DHistogram(histo,currentHistogram, secMuons.product(),tracks.product(),
1209	>	cumulativeFlags.at("secondary muon-track pairs").at(currentDir),scaleFactor);
1210	>	else if(currentHistogram.inputCollection == "muon-tau pairs") fill1DHistogram(histo,currentHistogram, muons.product(),taus.product(),
1211	>	cumulativeFlags.at("muon-tau pairs").at(currentDir),scaleFactor);
1212	>	else if(currentHistogram.inputCollection == "tau-tau pairs") fill1DHistogram(histo,currentHistogram, taus.product(),taus.product(),
1213	>	cumulativeFlags.at("tau-tau pairs").at(currentDir),scaleFactor);
1214	>	else if(currentHistogram.inputCollection == "tau-track pairs") fill1DHistogram(histo,currentHistogram, taus.product(),tracks.product(),
1215	>	cumulativeFlags.at("tau-track pairs").at(currentDir),scaleFactor);
1216	>	else if(currentHistogram.inputCollection == "electron-trigobj pairs") fill1DHistogram(histo,currentHistogram, electrons.product(),trigobjs.product(),
1217	>	cumulativeFlags.at("electron-trigobj pairs").at(currentDir),scaleFactor);
1218	>	else if(currentHistogram.inputCollection == "muon-trigobj pairs") fill1DHistogram(histo,currentHistogram, muons.product(),trigobjs.product(),
1219	>	cumulativeFlags.at("muon-trigobj pairs").at(currentDir),scaleFactor);
1220	>
1221	>	else if(currentHistogram.inputCollection == "events") fill1DHistogram(histo,currentHistogram,events.product(),cumulativeFlags.at("events").at(currentDir),scaleFactor);
1222	>	else if(currentHistogram.inputCollection == "taus") fill1DHistogram(histo,currentHistogram,taus.product(),cumulativeFlags.at("taus").at(currentDir),scaleFactor);
1223	>	else if(currentHistogram.inputCollection == "mets") fill1DHistogram(histo,currentHistogram,mets.product(),cumulativeFlags.at("mets").at(currentDir),scaleFactor);
1224	>	else if(currentHistogram.inputCollection == "tracks") fill1DHistogram(histo,currentHistogram,tracks.product(),cumulativeFlags.at("tracks").at(currentDir),scaleFactor);
1225	>	else if(currentHistogram.inputCollection == "genjets") fill1DHistogram(histo,currentHistogram,genjets.product(),cumulativeFlags.at("genjets").at(currentDir),scaleFactor);
1226	>	else if(currentHistogram.inputCollection == "mcparticles") fill1DHistogram(histo,currentHistogram,mcparticles.product(),cumulativeFlags.at("mcparticles").at(currentDir),scaleFactor);
1227	>	else if(currentHistogram.inputCollection == "primaryvertexs") fill1DHistogram(histo,currentHistogram,primaryvertexs.product(),cumulativeFlags.at("primaryvertexs").at(currentDir),scaleFactor);
1228	>	else if(currentHistogram.inputCollection == "bxlumis") fill1DHistogram(histo,currentHistogram,bxlumis.product(),cumulativeFlags.at("bxlumis").at(currentDir),scaleFactor);
1229	>	else if(currentHistogram.inputCollection == "photons") fill1DHistogram(histo,currentHistogram,photons.product(),cumulativeFlags.at("photons").at(currentDir),scaleFactor);
1230	>	else if(currentHistogram.inputCollection == "superclusters") fill1DHistogram(histo,currentHistogram,superclusters.product(),cumulativeFlags.at("superclusters").at(currentDir),scaleFactor);
1231	>	else if(currentHistogram.inputCollection == "trigobjs") fill1DHistogram(histo,currentHistogram,trigobjs.product(),cumulativeFlags.at("trigobjs").at(currentDir),scaleFactor);
1232	>	else if(currentHistogram.inputCollection == "stops" && datasetType_ == "signalMC") fill1DHistogram(histo,currentHistogram,stops.product(),cumulativeFlags.at("stops").at(currentDir),scaleFactor);
1233	>	}
1234	>	else if(currentHistogram.inputVariables.size() == 2){
1235	>	TH2D* histo;
1236	>	histo = twoDHists_.at(currentChannelIndex).at(currentCut).at(currentHistogram.name);
1237	>	if (currentHistogram.inputCollection == "jets") fill2DHistogram(histo,currentHistogram,jets.product(),cumulativeFlags.at("jets").at(currentDir),scaleFactor);
1238	>	else if(currentHistogram.inputCollection == "secondary jets") fill2DHistogram(histo,currentHistogram,jets.product(),cumulativeFlags.at("secondary jets").at(currentDir),scaleFactor);
1239	>	else if(currentHistogram.inputCollection == "secondary photons") fill2DHistogram(histo,currentHistogram,photons.product(),cumulativeFlags.at("secondary photons").at(currentDir),scaleFactor);
1240	>	else if(currentHistogram.inputCollection == "muons") fill2DHistogram(histo,currentHistogram,muons.product(),cumulativeFlags.at("muons").at(currentDir),scaleFactor);
1241	>	else if(currentHistogram.inputCollection == "secondary muons") fill2DHistogram(histo,currentHistogram,secMuons.product(),cumulativeFlags.at("secondary muons").at(currentDir),scaleFactor);
1242	>	else if(currentHistogram.inputCollection == "muon-muon pairs") fill2DHistogram(histo,currentHistogram,muons.product(),muons.product(),
1243	>	cumulativeFlags.at("muon-muon pairs").at(currentDir),scaleFactor);
1244	>	else if(currentHistogram.inputCollection == "muon-secondary muon pairs") fill2DHistogram(histo,currentHistogram,muons.product(),secMuons.product(),
1245	>	cumulativeFlags.at("muon-secondary muon pairs").at(currentDir),scaleFactor);
1246	>	else if(currentHistogram.inputCollection == "muon-secondary photon pairs") fill2DHistogram(histo,currentHistogram,muons.product(),photons.product(),
1247	>	cumulativeFlags.at("muon-secondary photon pairs").at(currentDir),scaleFactor);
1248	>	else if(currentHistogram.inputCollection == "muon-secondary jet pairs") fill2DHistogram(histo,currentHistogram,muons.product(),jets.product(),
1249	>	cumulativeFlags.at("muon-secondary jet pairs").at(currentDir),scaleFactor);
1250	>	else if(currentHistogram.inputCollection == "electron-secondary jet pairs") fill2DHistogram(histo,currentHistogram,electrons.product(),jets.product(),
1251	>	cumulativeFlags.at("electron-secondary jet pairs").at(currentDir),scaleFactor);
1252	>	else if(currentHistogram.inputCollection == "photon-secondary jet pairs") fill2DHistogram(histo,currentHistogram,photons.product(),jets.product(),
1253	>	cumulativeFlags.at("photon-secondary jet pairs").at(currentDir),scaleFactor);
1254	>	else if(currentHistogram.inputCollection == "electrons") fill2DHistogram(histo,currentHistogram,electrons.product(),cumulativeFlags.at("electrons").at(currentDir),scaleFactor);
1255	>	else if(currentHistogram.inputCollection == "secondary electrons") fill2DHistogram(histo,currentHistogram,electrons.product(),cumulativeFlags.at("secondary electrons").at(currentDir),scaleFactor);
1256	>	else if(currentHistogram.inputCollection == "electron-electron pairs") fill2DHistogram(histo,currentHistogram,electrons.product(),electrons.product(),
1257	>	cumulativeFlags.at("electron-electron pairs").at(currentDir),scaleFactor);
1258	>	else if(currentHistogram.inputCollection == "jet-jet pairs") fill2DHistogram(histo,currentHistogram,jets.product(),jets.product(),
1259	>	cumulativeFlags.at("jet-jet pairs").at(currentDir),scaleFactor);
1260	>	else if(currentHistogram.inputCollection == "electron-secondary electron pairs") fill2DHistogram(histo,currentHistogram,electrons.product(),electrons.product(),
1261	>	cumulativeFlags.at("electron-secondary electron pairs").at(currentDir),scaleFactor);
1262	>	else if(currentHistogram.inputCollection == "electron-muon pairs") fill2DHistogram(histo,currentHistogram,electrons.product(),muons.product(),
1263	>	cumulativeFlags.at("electron-muon pairs").at(currentDir),scaleFactor);
1264	>	else if(currentHistogram.inputCollection == "electron-jet pairs") fill2DHistogram(histo,currentHistogram,electrons.product(),jets.product(),
1265	>	cumulativeFlags.at("electron-jet pairs").at(currentDir),scaleFactor);
1266	>	else if(currentHistogram.inputCollection == "electron-photon pairs") fill2DHistogram(histo,currentHistogram,electrons.product(),photons.product(),
1267	>	cumulativeFlags.at("electron-photon pairs").at(currentDir),scaleFactor);
1268	>	else if(currentHistogram.inputCollection == "muon-jet pairs") fill2DHistogram(histo,currentHistogram,muons.product(),jets.product(),
1269	>	cumulativeFlags.at("muon-jet pairs").at(currentDir),scaleFactor);
1270	>	else if(currentHistogram.inputCollection == "muon-event pairs") fill2DHistogram(histo,currentHistogram,muons.product(),events.product(),
1271	>	cumulativeFlags.at("muon-event pairs").at(currentDir),scaleFactor);
1272	>	else if(currentHistogram.inputCollection == "met-jet pairs") fill2DHistogram(histo,currentHistogram,mets.product(),jets.product(),
1273	>	cumulativeFlags.at("met-jet pairs").at(currentDir),scaleFactor);
1274	>	else if(currentHistogram.inputCollection == "track-jet pairs") fill2DHistogram(histo,currentHistogram,tracks.product(),jets.product(),
1275	>	cumulativeFlags.at("track-jet pairs").at(currentDir),scaleFactor);
1276	>	else if(currentHistogram.inputCollection == "photon-jet pairs") fill2DHistogram(histo,currentHistogram,photons.product(),jets.product(),
1277	>	cumulativeFlags.at("photon-jet pairs").at(currentDir),scaleFactor);
1278	>	else if(currentHistogram.inputCollection == "muon-photon pairs") fill2DHistogram(histo,currentHistogram,muons.product(),photons.product(),
1279	>	cumulativeFlags.at("muon-photon pairs").at(currentDir),scaleFactor);
1280	>	else if(currentHistogram.inputCollection == "electron-track pairs") fill2DHistogram(histo,currentHistogram,electrons.product(),tracks.product(),
1281	>	cumulativeFlags.at("electron-track pairs").at(currentDir),scaleFactor);
1282	>	else if(currentHistogram.inputCollection == "muon-track pairs") fill2DHistogram(histo,currentHistogram,muons.product(),tracks.product(),
1283	>	cumulativeFlags.at("muon-track pairs").at(currentDir),scaleFactor);
1284	>	else if(currentHistogram.inputCollection == "secondary muon-track pairs") fill2DHistogram(histo,currentHistogram,secMuons.product(),tracks.product(),
1285	>	cumulativeFlags.at("muon-track pairs").at(currentDir),scaleFactor);
1286	>	else if(currentHistogram.inputCollection == "muon-tau pairs") fill2DHistogram(histo,currentHistogram,muons.product(),taus.product(),
1287	>	cumulativeFlags.at("muon-tau pairs").at(currentDir),scaleFactor);
1288	>	else if(currentHistogram.inputCollection == "tau-tau pairs") fill2DHistogram(histo,currentHistogram,taus.product(),taus.product(),
1289	>	cumulativeFlags.at("tau-tau pairs").at(currentDir),scaleFactor);
1290	>	else if(currentHistogram.inputCollection == "tau-track pairs") fill2DHistogram(histo,currentHistogram,taus.product(),tracks.product(),
1291	>	cumulativeFlags.at("tau-track pairs").at(currentDir),scaleFactor);
1292	>	else if(currentHistogram.inputCollection == "electron-trigobj pairs") fill2DHistogram(histo,currentHistogram,electrons.product(),trigobjs.product(),
1293	>	cumulativeFlags.at("electron-trigobj pairs").at(currentDir),scaleFactor);
1294	>	else if(currentHistogram.inputCollection == "muon-trigobj pairs") fill2DHistogram(histo,currentHistogram,muons.product(),trigobjs.product(),
1295	>	cumulativeFlags.at("muon-trigobj pairs").at(currentDir),scaleFactor);
1296	>	else if(currentHistogram.inputCollection == "events") fill2DHistogram(histo,currentHistogram,events.product(),cumulativeFlags.at("events").at(currentDir),scaleFactor);
1297	>	else if(currentHistogram.inputCollection == "taus") fill2DHistogram(histo,currentHistogram,taus.product(),cumulativeFlags.at("taus").at(currentDir),scaleFactor);
1298	>	else if(currentHistogram.inputCollection == "mets") fill2DHistogram(histo,currentHistogram,mets.product(),cumulativeFlags.at("mets").at(currentDir),scaleFactor);
1299	>	else if(currentHistogram.inputCollection == "tracks") fill2DHistogram(histo,currentHistogram,tracks.product(),cumulativeFlags.at("tracks").at(currentDir),scaleFactor);
1300	>	else if(currentHistogram.inputCollection == "track-event pairs") fill2DHistogram(histo,currentHistogram,tracks.product(),events.product(),
1301	>	cumulativeFlags.at("track-event pairs").at(currentDir),scaleFactor);
1302	>	else if(currentHistogram.inputCollection == "genjets") fill2DHistogram(histo,currentHistogram,genjets.product(),cumulativeFlags.at("genjets").at(currentDir),scaleFactor);
1303	>	else if(currentHistogram.inputCollection == "mcparticles") fill2DHistogram(histo,currentHistogram,mcparticles.product(),cumulativeFlags.at("mcparticles").at(currentDir),scaleFactor);
1304	>	else if(currentHistogram.inputCollection == "primaryvertexs") fill2DHistogram(histo,currentHistogram,primaryvertexs.product(),cumulativeFlags.at("primaryvertexs").at(currentDir),scaleFactor);
1305	>	else if(currentHistogram.inputCollection == "bxlumis") fill2DHistogram(histo,currentHistogram,bxlumis.product(),cumulativeFlags.at("bxlumis").at(currentDir),scaleFactor);
1306	>	else if(currentHistogram.inputCollection == "photons") fill2DHistogram(histo,currentHistogram,photons.product(),cumulativeFlags.at("photons").at(currentDir),scaleFactor);
1307	>	else if(currentHistogram.inputCollection == "superclusters") fill2DHistogram(histo,currentHistogram,superclusters.product(),cumulativeFlags.at("superclusters").at(currentDir),scaleFactor);
1308	>	else if(currentHistogram.inputCollection == "trigobjs") fill2DHistogram(histo,currentHistogram,trigobjs.product(),cumulativeFlags.at("trigobjs").at(currentDir),scaleFactor);
1309	>	else if(currentHistogram.inputCollection == "stops" && datasetType_ == "signalMC") fill2DHistogram(histo,currentHistogram,stops.product(),cumulativeFlags.at("stops").at(currentDir),scaleFactor);
1310	>	}
1311
1312	+	}
1313
1058	–	//fills histograms with the sizes of collections
1059	–	for (uint currentObjectIndex = 0; currentObjectIndex != objectsToPlot.size(); currentObjectIndex++){
1314
1315	<	string currentObject = objectsToPlot.at(currentObjectIndex);
1316	<	string objectToPlot = "";
1315	>	//fills histograms with the sizes of collections
1316	>	for (uint currentObjectIndex = 0; currentObjectIndex != objectsToPlot.size(); currentObjectIndex++){
1317
1318	<	// Name of objectToPlot here must match the name specified in OSUAnalysis::OSUAnalysis().
1319	<	if(currentObject == "muon-muon pairs") objectToPlot = "dimuonPairs";
1066	<	else if(currentObject == "electron-electron pairs") objectToPlot = "dielectronPairs";
1067	<	else if(currentObject == "electron-muon pairs") objectToPlot = "electronMuonPairs";
1068	<	else if(currentObject == "electron-jet pairs") objectToPlot = "electronJetPairs";
1069	<	else if(currentObject == "muon-jet pairs") objectToPlot = "muonJetPairs";
1070	<	else if(currentObject == "jet-jet pairs") objectToPlot = "dijetPairs";
1071	<	else if(currentObject == "secondary jets") objectToPlot = "secondaryJets";
1072	<	else if(currentObject == "electron-track pairs") objectToPlot = "electronTrackPairs";
1073	<	else if(currentObject == "muon-track pairs") objectToPlot = "muonTrackPairs";
1074	<	else if(currentObject == "muon-tau pairs") objectToPlot = "muonTauPairs";
1075	<	else if(currentObject == "tau-tau pairs") objectToPlot = "ditauPairs";
1076	<	else if(currentObject == "tau-track pairs") objectToPlot = "tauTrackPairs";
1077	<	else if(currentObject == "track-event pairs") objectToPlot = "trackEventPairs";
1078	<	else if(currentObject == "muon-secondary muon pairs") objectToPlot = "muonSecondaryMuonPairs";
1079	<	else if(currentObject == "secondary muons") objectToPlot = "secondaryMuons";
1080	<	else if(currentObject == "electron-secondary electron pairs") objectToPlot = "electronSecondaryElectronPairs";
1081	<	else if(currentObject == "secondary electrons") objectToPlot = "secondaryElectrons";
1082	<	else if(currentObject == "electron-trigobj pairs") objectToPlot = "electronTrigobjPairs";
1083	<	else if(currentObject == "muon-trigobj pairs") objectToPlot = "muonTrigobjPairs";
1084	<	else objectToPlot = currentObject;
1085	<
1086	<	string tempCurrentObject = objectToPlot;
1087	<	tempCurrentObject.at(0) = toupper(tempCurrentObject.at(0));
1088	<	string histoName = "num" + tempCurrentObject;
1089	<
1090	<	//set position of primary vertex in event, in order to calculate quantities relative to it
1091	<	if(find(objectsToCut.begin(), objectsToCut.end(), currentObject) != objectsToCut.end()) {
1092	<	vector<bool> lastCutFlags = cumulativeFlags.at(currentObject).at(currentDir);
1093	<	int numToPlot = 0;
1094	<	for (uint currentFlag = 0; currentFlag != lastCutFlags.size(); currentFlag++){
1095	<	if(lastCutFlags.at(currentFlag)) numToPlot++;
1096	<	}
1097	<	if(objectToPlot == "primaryvertexs"){
1098	<	oneDHists_.at(currentChannelIndex).at(currentCut).at(histoName+"BeforePileupCorrection")->Fill(primaryvertexs->size());
1099	<	oneDHists_.at(currentChannelIndex).at(currentCut).at(histoName+"AfterPileupCorrection")->Fill(primaryvertexs->size(),scaleFactor);
1100	<	}
1101	<	else {
1102	<	oneDHists_.at(currentChannelIndex).at(currentCut).at(histoName)->Fill(numToPlot,scaleFactor);
1103	<	}
1104	<	}
1105	<	} // end for (uint currentObjectIndex = 0; currentObjectIndex != objectsToPlot.size(); currentObjectIndex++)
1106	<
1107	<	if (!BNTrees_.at(currentChannelIndex)) { cout << "ERROR: Undefined BNTree. Will likely seg fault." << endl; }
1108	<	BNTrees_.at(currentChannelIndex)->Fill(); // only fill if event has passed cuts
1318	>	string currentObject = objectsToPlot.at(currentObjectIndex);
1319	>	string objectToPlot = "";
1320
1321	<	} // end if(eventPassedPreviousCuts.at(currentDir)){
1322	<	} // end loop over cuts
1323	<
1324	<	} // end loop over channel
1321	>	if (verbose_) clog << "Filling histogram of number of selected objects in collection: " << currentObject << endl;
1322	>
1323	>	// Name of objectToPlot here must match the name specified in OSUAnalysis::OSUAnalysis().
1324	>	if(currentObject == "muon-muon pairs") objectToPlot = "dimuonPairs";
1325	>	else if(currentObject == "electron-electron pairs") objectToPlot = "dielectronPairs";
1326	>	else if(currentObject == "electron-muon pairs") objectToPlot = "electronMuonPairs";
1327	>	else if(currentObject == "electron-photon pairs") objectToPlot = "electronPhotonPairs";
1328	>	else if(currentObject == "electron-jet pairs") objectToPlot = "electronJetPairs";
1329	>	else if(currentObject == "muon-jet pairs") objectToPlot = "muonJetPairs";
1330	>	else if(currentObject == "muon-event pairs") objectToPlot = "muonEventPairs";
1331	>	else if(currentObject == "muon-photon pairs") objectToPlot = "muonPhotonPairs";
1332	>	else if(currentObject == "photon-jet pairs") objectToPlot = "photonJetPairs";
1333	>	else if(currentObject == "met-jet pairs") objectToPlot = "metJetPairs";
1334	>	else if(currentObject == "track-jet pairs") objectToPlot = "trackJetPairs";
1335	>	else if(currentObject == "jet-jet pairs") objectToPlot = "dijetPairs";
1336	>	else if(currentObject == "jet-secondary jet pairs") objectToPlot = "jetSecondaryJetPairs";
1337	>	else if(currentObject == "secondary jets") objectToPlot = "secondaryJets";
1338	>	else if(currentObject == "secondary photons") objectToPlot = "secondaryPhotons";
1339	>	else if(currentObject == "electron-track pairs") objectToPlot = "electronTrackPairs";
1340	>	else if(currentObject == "muon-track pairs") objectToPlot = "muonTrackPairs";
1341	>	else if(currentObject == "secondary muon-track pairs") objectToPlot = "secondaryMuonTrackPairs";
1342	>	else if(currentObject == "muon-tau pairs") objectToPlot = "muonTauPairs";
1343	>	else if(currentObject == "tau-tau pairs") objectToPlot = "ditauPairs";
1344	>	else if(currentObject == "tau-track pairs") objectToPlot = "tauTrackPairs";
1345	>	else if(currentObject == "track-event pairs") objectToPlot = "trackEventPairs";
1346	>	else if(currentObject == "muon-secondary muon pairs") objectToPlot = "muonSecondaryMuonPairs";
1347	>	else if(currentObject == "secondary muons") objectToPlot = "secondaryMuons";
1348	>	else if(currentObject == "muon-secondary jet pairs") objectToPlot = "muonSecondaryJetPairs";
1349	>	else if(currentObject == "muon-secondary photon pairs") objectToPlot = "muonSecondaryJetPairs";
1350	>	else if(currentObject == "electron-secondary jet pairs") objectToPlot = "electronSecondaryJetPairs";
1351	>	else if(currentObject == "photon-secondary jet pairs") objectToPlot = "photonSecondaryJetPairs";
1352	>	else if(currentObject == "electron-secondary electron pairs") objectToPlot = "electronSecondaryElectronPairs";
1353	>	else if(currentObject == "secondary electrons") objectToPlot = "secondaryElectrons";
1354	>	else if(currentObject == "electron-trigobj pairs") objectToPlot = "electronTrigobjPairs";
1355	>	else if(currentObject == "muon-trigobj pairs") objectToPlot = "muonTrigobjPairs";
1356	>	else if(currentObject == "electron-mcparticle pairs") objectToPlot = "electronMCparticlePairs";
1357	>	else objectToPlot = currentObject;
1358	>
1359	>	string tempCurrentObject = objectToPlot;
1360	>	tempCurrentObject.at(0) = toupper(tempCurrentObject.at(0));
1361	>	string histoName = "num" + tempCurrentObject;
1362	>
1363	>
1364	>	if(find(objectsToPlot.begin(), objectsToPlot.end(), currentObject) != objectsToPlot.end()) {
1365	>	flagPair lastCutFlags = cumulativeFlags.at(currentObject).at(currentDir);
1366	>	int numToPlot = 0;
1367	>	for (uint iObj = 0; iObj != lastCutFlags.size(); iObj++){ // loop over all the objects
1368	>	if(lastCutFlags.at(iObj).second) {
1369	>	numToPlot++;
1370	>	if (verbose_>3) clog << " Found object " << iObj << " in collection " << currentObject << " to plot." << endl;
1371	>	}
1372	>	}
1373	>
1374	>	if(objectToPlot == "primaryvertexs"){
1375	>	oneDHists_.at(currentChannelIndex).at(currentCut).at(histoName+"BeforePileupCorrection")->Fill(primaryvertexs->size());
1376	>	oneDHists_.at(currentChannelIndex).at(currentCut).at(histoName+"AfterPileupCorrection")->Fill(primaryvertexs->size(),scaleFactor);
1377	>	}
1378	>	else {
1379	>	if (printEventInfo_) clog << "Number of selected " << objectToPlot << " to plot: " << numToPlot << endl;
1380	>	oneDHists_.at(currentChannelIndex).at(currentCut).at(histoName)->Fill(numToPlot,scaleFactor);
1381	>	}
1382	>	}
1383	>
1384	>	} // end for (uint currentObjectIndex = 0; currentObjectIndex != objectsToPlot.size(); currentObjectIndex++)
1385
1386
1387	+	} // end if(eventPassedPreviousCuts.at(currentDir))
1388	+	} // end loop over cuts
1389	+
1390	+	if (!useEDMFormat_ && eventPassedAllCuts){
1391	+	// Assign BNTree variables
1392	+	for (uint iBranch = 0; iBranch != treeBranches_.size(); iBranch++) {
1393	+	BranchSpecs brSpecs = treeBranches_.at(iBranch);
1394	+	string coll = brSpecs.inputCollection;
1395	+	if (cumulativeFlags.count(coll) == 0) clog << "Error: no flags found for collection: " << coll << ", will cause a seg fault" << endl;
1396	+
1397	+	if (coll == "jets") assignTreeBranch(brSpecs,jets.product(), cumulativeFlags.at(coll).back());
1398	+	else if(coll == "secondary jets") assignTreeBranch(brSpecs,jets.product(), cumulativeFlags.at(coll).back());
1399	+	else if(coll == "secondary photons") assignTreeBranch(brSpecs,photons.product(), cumulativeFlags.at(coll).back());
1400	+	else if(coll == "muons") assignTreeBranch(brSpecs,muons.product(), cumulativeFlags.at(coll).back());
1401	+	else if(coll == "secondary muons") assignTreeBranch(brSpecs,secMuons.product(), cumulativeFlags.at(coll).back());
1402	+	else if(coll == "electrons") assignTreeBranch(brSpecs,electrons.product(), cumulativeFlags.at(coll).back());
1403	+	else if(coll == "secondary electrons") assignTreeBranch(brSpecs,electrons.product(), cumulativeFlags.at(coll).back());
1404	+	else if(coll == "events") assignTreeBranch(brSpecs,events.product(), cumulativeFlags.at(coll).back());
1405	+	else if(coll == "taus") assignTreeBranch(brSpecs,taus.product(), cumulativeFlags.at(coll).back());
1406	+	else if(coll == "mets") assignTreeBranch(brSpecs,mets.product(), cumulativeFlags.at(coll).back());
1407	+	else if(coll == "tracks") assignTreeBranch(brSpecs,tracks.product(), cumulativeFlags.at(coll).back());
1408	+	else if(coll == "genjets") assignTreeBranch(brSpecs,genjets.product(), cumulativeFlags.at(coll).back());
1409	+	else if(coll == "mcparticles") assignTreeBranch(brSpecs,mcparticles.product(), cumulativeFlags.at(coll).back());
1410	+	else if(coll == "primaryvertexs") assignTreeBranch(brSpecs,primaryvertexs.product(),cumulativeFlags.at(coll).back());
1411	+	else if(coll == "bxlumis") assignTreeBranch(brSpecs,bxlumis.product(), cumulativeFlags.at(coll).back());
1412	+	else if(coll == "photons") assignTreeBranch(brSpecs,photons.product(), cumulativeFlags.at(coll).back());
1413	+	else if(coll == "superclusters") assignTreeBranch(brSpecs,superclusters.product(), cumulativeFlags.at(coll).back());
1414	+	else if(coll == "trigobjs") assignTreeBranch(brSpecs,trigobjs.product(), cumulativeFlags.at(coll).back());
1415	+	else if(coll == "stops"
1416	+	&& datasetType_ == "signalMC") assignTreeBranch(brSpecs,stops.product(), cumulativeFlags.at(coll).back());
1417	+	} // end loop over branches
1418	+	// set the evtLong, runInt, and lumiInt variables separately, since they are not type float
1419	+	BNTreeBranchVals_evtLong_ = events->at(0).evt;
1420	+	BNTreeBranchVals_runInt_ = events->at(0).run;
1421	+	BNTreeBranchVals_lumiInt_ = events->at(0).lumi;
1422	+
1423	+	if (!BNTrees_.at(currentChannelIndex)) { clog << "ERROR: Undefined BNTree. Will likely seg fault." << endl; }
1424	+	BNTrees_.at(currentChannelIndex)->Fill(); // only fill if event has passed cuts
1425	+	}
1426	+
1427	+	(*channelDecisions)[currentChannel.name] = eventPassedAllCuts;
1428	+
1429	+	} // end loop over channel
1430	+
1431		masterCutFlow_->fillCutFlow(masterScaleFactor);
1432
1433	+	event.put (channelDecisions, "channelDecisions");
1434	+
1435	+	isFirstEvent_ = false;
1436
1437	<	} // end void OSUAnalysis::analyze (const edm::Event &event, const edm::EventSetup &setup)
1437	>	if (verbose_) clog << "Finished OSUAnalysis::produce." << endl;
1438	>
1439	>	} // end void OSUAnalysis::produce (const edm::Event &event, const edm::EventSetup &setup)
1440
1441
1442
#	Line 1131 \| Line 1451 \| OSUAnalysis::evaluateComparison (double
1451		else if(comparison == "==") return testValue == cutValue;
1452		else if(comparison == "=") return testValue == cutValue;
1453		else if(comparison == "!=") return testValue != cutValue;
1454	<	else {cout << "WARNING: invalid comparison operator '" << comparison << "'\n"; return false;}
1454	>	else {clog << "WARNING: invalid comparison operator '" << comparison << "'\n"; return false;}
1455
1456		}
1457
#	Line 1144 \| Line 1464 \| OSUAnalysis::evaluateComparison (string
1464		else if(comparison == "<") return testValue < cutValue;
1465		else if(comparison == "<=") return testValue <= cutValue;
1466		else if(comparison == "==") return testValue == cutValue;
1467	<	else if(comparison == "=") return testValue == cutValue;
1467	>	else if(comparison == "=") return testValue == cutValue;
1468		else if(comparison == "!=") return testValue != cutValue;
1469	<	else {cout << "WARNING: invalid comparison operator '" << comparison << "'\n"; return false;}
1469	>	else {clog << "WARNING: invalid comparison operator '" << comparison << "'\n"; return false;}
1470
1471		}
1472
#	Line 1156 \| Line 1476 \| OSUAnalysis::evaluateTriggers (vector<st
1476		//initialize to false until a chosen trigger is passed
1477		bool triggerDecision = false;
1478
1479	+	if (printAllTriggers_) clog << "Printing list of all available triggers (which this event may or may not pass):" << endl;
1480		//loop over all triggers defined in the event
1481		for (BNtriggerCollection::const_iterator trigger = triggerCollection->begin (); trigger != triggerCollection->end (); trigger++){
1482
1483	+	if (printAllTriggers_) clog << " " << trigger->name << endl;
1484	+
1485		//we're only interested in triggers that actually passed
1486		if(trigger->pass != 1) continue;
1487
#	Line 1169 \| Line 1492 \| OSUAnalysis::evaluateTriggers (vector<st
1492		//if the event passes one of the chosen triggers, set triggerDecision to true
1493		for(uint triggerName = 0; triggerName != triggersToTest.size(); triggerName++){
1494		if(trigger->name.find(triggersToTest.at(triggerName))!=string::npos) triggerDecision = true;
1495	<	}
1495	>	}
1496		}
1497	<	//if none of the veto triggers fired:
1497	>
1498	>	printAllTriggers_ = false; // only print triggers once, not every event
1499	>
1500	>	//if none of the veto triggers fired:
1501		//return the OR of all the chosen triggers
1502		if (triggersToTest.size() != 0) return triggerDecision;
1503		//or if no triggers were defined return true
#	Line 1340 \| Line 1666 \| *OSUAnalysis::valueLookup (const BNjet o**
1666		else if(variable == "puJetId_loose_simple") value = object->puJetId_loose_simple;
1667		else if(variable == "puJetId_loose_cutbased") value = object->puJetId_loose_cutbased;
1668
1669	+	//user defined variable
1670	+	else if(variable == "disappTrkLeadingJetID") {
1671	+	value = object->pt > 110
1672	+	&& fabs(object->eta) < 2.4
1673	+	&& object->chargedHadronEnergyFraction > 0.2
1674	+	&& object->neutralHadronEnergyFraction < 0.7
1675	+	&& object->chargedEmEnergyFraction < 0.5
1676	+	&& object->neutralEmEnergyFraction < 0.7;
1677	+	}
1678	+
1679	+	else if(variable == "disappTrkSubLeadingJetID") {
1680	+	value = object->pt > 30
1681	+	&& fabs(object->eta) < 4.5
1682	+	&& object->neutralHadronEnergyFraction < 0.7
1683	+	&& object->chargedEmEnergyFraction < 0.5;
1684	+	}
1685	+
1686	+	else if(variable == "dPhiMet") {
1687	+	if (const BNmet *met = chosenMET ()) {
1688	+	value = deltaPhi (object->phi, met->phi);
1689	+	} else value = -999;
1690	+	}
1691	+
1692
1693	<	else{cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
1693	>	else{clog << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
1694
1695		value = applyFunction(function, value);
1696
1697		return value;
1698	<	}
1698	>	} // end jet valueLookup
1699
1700
1701		//!muon valueLookup
#	Line 1443 \| Line 1792 \| OSUAnalysis::valueLookup (const BNmuon*
1792		else if(variable == "neutralHadronIsoDR04") value = object->neutralHadronIsoDR04;
1793		else if(variable == "photonIsoDR04") value = object->photonIsoDR04;
1794		else if(variable == "puChargedHadronIsoDR04") value = object->puChargedHadronIsoDR04;
1795	+	else if(variable == "chargedHadronIsoDR04") value = object->chargedHadronIsoDR04;
1796	+	else if(variable == "neutralHadronIsoDR04") value = object->neutralHadronIsoDR04;
1797	+	else if(variable == "photonIsoDR04") value = object->photonIsoDR04;
1798	+	else if(variable == "puChargedHadronIsoDR04") value = object->puChargedHadronIsoDR04;
1799		else if(variable == "rhoPrime") value = object->rhoPrime;
1800		else if(variable == "AEffDr03") value = object->AEffDr03;
1801		else if(variable == "AEffDr04") value = object->AEffDr04;
#	Line 1450 \| Line 1803 \| OSUAnalysis::valueLookup (const BNmuon*
1803		else if(variable == "pfIsoR03SumNeutralHadronEt") value = object->pfIsoR03SumNeutralHadronEt;
1804		else if(variable == "pfIsoR03SumPhotonEt") value = object->pfIsoR03SumPhotonEt;
1805		else if(variable == "pfIsoR03SumPUPt") value = object->pfIsoR03SumPUPt;
1806	+	else if(variable == "relpfIsoR04SumExceptChargedHad") value = (object->pfIsoR04SumNeutralHadronEt + object->pfIsoR04SumPhotonEt - 0.5*object->pfIsoR04SumPUPt)/ object->pt;
1807	+	else if(variable == "relpfIsoR04SumChargedHadronPt") value = object->pfIsoR04SumChargedHadronPt/object->pt;
1808	+	else if(variable == "relpfIsoR04SumNeutralHadronEt") value = object->pfIsoR04SumNeutralHadronEt/object->pt;
1809	+	else if(variable == "relpfIsoR04SumPhotonEt") value = object->pfIsoR04SumPhotonEt/object->pt;
1810	+	else if(variable == "relpfIsoR04SumPUPt") value = object->pfIsoR04SumPUPt/object->pt;
1811		else if(variable == "pfIsoR04SumChargedHadronPt") value = object->pfIsoR04SumChargedHadronPt;
1812		else if(variable == "pfIsoR04SumNeutralHadronEt") value = object->pfIsoR04SumNeutralHadronEt;
1813		else if(variable == "pfIsoR04SumPhotonEt") value = object->pfIsoR04SumPhotonEt;
#	Line 1506 \| Line 1864 \| OSUAnalysis::valueLookup (const BNmuon*
1864		else if(variable == "time_ndof") value = object->time_ndof;
1865
1866		//user-defined variables
1867	+	else if(variable == "looseID") {
1868	+	value = object->pt > 10 &&
1869	+	(object->isGlobalMuon > 0 \|\|
1870	+	object->isTrackerMuon > 0);
1871	+	}
1872	+	else if(variable == "looseIDGlobalMuon") {
1873	+	value = object->pt > 10 &&
1874	+	object->isGlobalMuon > 0;
1875	+	}
1876		else if(variable == "correctedD0VertexErr") value = hypot (object->tkD0err, hypot (chosenVertex ()->xError, chosenVertex ()->yError));
1877		else if(variable == "correctedD0VertexSig") value = object->correctedD0Vertex / hypot (object->tkD0err, hypot (chosenVertex ()->xError, chosenVertex ()->yError));
1878		else if(variable == "detIso") value = (object->trackIsoDR03) / object->pt;
1879		else if(variable == "relPFdBetaIso") value = (object->pfIsoR04SumChargedHadronPt + max(0.0, object->pfIsoR04SumNeutralHadronEt + object->pfIsoR04SumPhotonEt - 0.5*object->pfIsoR04SumPUPt)) / object->pt;
1880	+	else if(variable == "relPFdBetaIsoPseudo") value = (object->pfIsoR04SumChargedHadronPt + object->pfIsoR04SumNeutralHadronEt + object->pfIsoR04SumPhotonEt - 0.5*object->pfIsoR04SumPUPt) / object->pt;
1881		else if(variable == "relPFrhoIso") value = ( object->chargedHadronIso + max(0.0, object->neutralHadronIso + object->photonIso - object->AEffDr03*object->rhoPrime) ) / object->pt;
1882		else if(variable == "metMT") {
1883		if (const BNmet *met = chosenMET ())
#	Line 1520 \| Line 1888 \| OSUAnalysis::valueLookup (const BNmuon*
1888		else
1889		value = -999;
1890		}
1891	<
1892	<
1891	>	else if(variable == "ptPlusMet") {
1892	>	// Calculate the magnitude of the vector sum of the muon pT and the Met.
1893	>	if (const BNmet *met = chosenMET ())
1894	>	{
1895	>	TVector2 p2Met;
1896	>	TVector2 p2Muon;
1897	>	p2Met. SetMagPhi( met->pt, met->phi);
1898	>	p2Muon.SetMagPhi(object->pt, object->phi);
1899	>	TVector2 p2MetElec = p2Met + p2Muon;
1900	>	value = p2MetElec.Mod();
1901	>	}
1902	>	else
1903	>	value = -999;
1904	>	}
1905
1906		else if(variable == "correctedD0VertexInEBPlus"){
1907		if(fabs(object->eta) < 0.8 && object->eta > 0) value = object->correctedD0Vertex;
#	Line 1706 \| Line 2086 \| OSUAnalysis::valueLookup (const BNmuon*
2086
2087
2088
2089	<	else{cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
2089	>	else{clog << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
2090
2091		value = applyFunction(function, value);
2092
2093		return value;
2094	<	}
2094	>	} // end muon valueLookup
2095	>
2096
2097		//!electron valueLookup
2098		double
#	Line 1880 \| Line 2261 \| OSUAnalysis::valueLookup (const BNelectr
2261		else if(variable == "correctedD0VertexSig") value = object->correctedD0Vertex / hypot (object->tkD0err, hypot (chosenVertex ()->xError, chosenVertex ()->yError));
2262		else if(variable == "detIso") value = (object->trackIso) / object->pt;
2263		else if(variable == "relPFrhoIso") value = ( object->chargedHadronIsoDR03 + max(0.0, object->neutralHadronIsoDR03 + object->photonIsoDR03 - object->AEffDr03*object->rhoPrime) ) / object->pt;
2264	+	else if(variable == "relPFrhoIsoEB") value = object->isEB ? ( object->chargedHadronIsoDR03 + max(0.0, object->neutralHadronIsoDR03 + object->photonIsoDR03 - object->AEffDr03*object->rhoPrime) ) / object->pt : -999;
2265	+	else if(variable == "relPFrhoIsoEE") value = object->isEE ? ( object->chargedHadronIsoDR03 + max(0.0, object->neutralHadronIsoDR03 + object->photonIsoDR03 - object->AEffDr03*object->rhoPrime) ) / object->pt : -999;
2266		else if(variable == "metMT") {
2267		if (const BNmet *met = chosenMET ())
2268		{
#	Line 1890 \| Line 2273 \| OSUAnalysis::valueLookup (const BNelectr
2273		value = -999;
2274		}
2275
2276	+	else if(variable == "ptPlusMet") {
2277	+	// Calculate the magnitude of the vector sum of the electron pT and the Met.
2278	+	if (const BNmet *met = chosenMET ())
2279	+	{
2280	+	TVector2 p2Met;
2281	+	TVector2 p2Elec;
2282	+	p2Met. SetMagPhi( met->pt, met->phi);
2283	+	p2Elec.SetMagPhi(object->pt, object->phi);
2284	+	TVector2 p2MetElec = p2Met + p2Elec;
2285	+	value = p2MetElec.Mod();
2286	+	}
2287	+	else
2288	+	value = -999;
2289	+	}
2290	+
2291		else if(variable == "correctedD0VertexEEPositiveChargeLowPt"){
2292		if(fabs(object->eta) > 1.479 && object->charge > 0 && object->pt > 45) value = object->correctedD0Vertex;
2293		else value = -999;
#	Line 1951 \| Line 2349 \| OSUAnalysis::valueLookup (const BNelectr
2349		else value = -999;
2350		}
2351
2352	+	else if(variable == "looseID"){
2353	+	if (object->isEB)
2354	+	{
2355	+	value = fabs(object->delEtaIn) < 0.007 \
2356	+	&& fabs (object->delPhiIn) < 0.15 \
2357	+	&& object->scSigmaIEtaIEta < 0.01 \
2358	+	&& object->hadOverEm < 0.12 \
2359	+	&& fabs (object->correctedD0Vertex) < 0.02 \
2360	+	&& fabs (object->correctedDZ) < 0.2 \
2361	+	&& object->absInvEMinusInvPin < 0.05 \
2362	+	&& object->passConvVeto;
2363	+	}
2364	+	else
2365	+	{
2366	+	value = fabs(object->delEtaIn) < 0.009 \
2367	+	&& fabs (object->delPhiIn) < 0.10 \
2368	+	&& object->scSigmaIEtaIEta < 0.03 \
2369	+	&& object->hadOverEm < 0.10 \
2370	+	&& fabs (object->correctedD0Vertex) < 0.02 \
2371	+	&& fabs (object->correctedDZ) < 0.2 \
2372	+	&& object->absInvEMinusInvPin < 0.05 \
2373	+	&& object->passConvVeto;
2374	+	}
2375	+	}
2376	+
2377		else if(variable == "tightID"){
2378		if (object->isEB)
2379		{
#	Line 1976 \| Line 2399 \| OSUAnalysis::valueLookup (const BNelectr
2399		}
2400		}
2401
2402	+	else if(variable == "looseID_MVA"){
2403	+	value = object->pt > 10
2404	+	&& object->mvaNonTrigV0 > 0;
2405	+	}
2406		else if(variable == "correctedD0VertexInEBPositiveCharge"){
2407		if(fabs(object->eta) < 0.8 && object->charge > 0) value = object->correctedD0Vertex;
2408		else value = -999;
#	Line 2106 \| Line 2533 \| OSUAnalysis::valueLookup (const BNelectr
2533
2534
2535
2536	<	else{cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
2536	>	else{clog << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
2537
2538		value = applyFunction(function, value);
2539
2540		return value;
2541	<	}
2541	>	} // end electron valueLookup
2542	>
2543
2544		//!event valueLookup
2545		double
#	Line 2192 \| Line 2620 \| OSUAnalysis::valueLookup (const BNevent*
2620		else if(variable == "muonScaleFactor") value = muonScaleFactor_;
2621		else if(variable == "electronScaleFactor") value = electronScaleFactor_;
2622		else if(variable == "stopCTauScaleFactor") value = stopCTauScaleFactor_;
2623	+	else if(variable == "bTagScaleFactor") value = bTagScaleFactor_;
2624
2625	<	else{cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
2625	>	else if(variable == "unfilteredHt") value = getHt(jets.product());
2626	>	else if(variable == "ht") value = chosenHT ();
2627	>
2628	>	else if(variable == "leadMuPairInvMass"){
2629	>	pair<const BNmuon , const BNmuon > muPair = leadMuonPair ();
2630	>	TLorentzVector p0 (muPair.first->px, muPair.first->py, muPair.first->pz, muPair.first->energy),
2631	>	p1 (muPair.second->px, muPair.second->py, muPair.second->pz, muPair.second->energy);
2632	>	value = (p0 + p1).M ();
2633	>	}
2634	>	else if(variable == "leadMuPairPt"){
2635	>	pair<const BNmuon , const BNmuon > muPair = leadMuonPair ();
2636	>	TVector2 pt0 (muPair.first->px, muPair.first->py),
2637	>	pt1 (muPair.second->px, muPair.second->py);
2638	>	pt0 += pt1;
2639	>	value = pt0.Mod ();
2640	>	}
2641	>	else if(variable == "leadElPairInvMass"){
2642	>	pair<const BNelectron , const BNelectron > muPair = leadElectronPair ();
2643	>	TLorentzVector p0 (muPair.first->px, muPair.first->py, muPair.first->pz, muPair.first->energy),
2644	>	p1 (muPair.second->px, muPair.second->py, muPair.second->pz, muPair.second->energy);
2645	>	value = (p0 + p1).M ();
2646	>	}
2647	>	else if(variable == "leadElPairPt"){
2648	>	pair<const BNelectron , const BNelectron > muPair = leadElectronPair ();
2649	>	TVector2 pt0 (muPair.first->px, muPair.first->py),
2650	>	pt1 (muPair.second->px, muPair.second->py);
2651	>	pt0 += pt1;
2652	>	value = pt0.Mod ();
2653	>	}
2654	>	else{clog << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
2655
2656		value = applyFunction(function, value);
2657
2658		return value;
2659	<	}
2659	>	} // end event valueLookup
2660	>
2661
2662		//!tau valueLookup
2663		double
#	Line 2246 \| Line 2705 \| *OSUAnalysis::valueLookup (const BNtau o**
2705		else if(variable == "HPSdecayModeFinding") value = object->HPSdecayModeFinding;
2706		else if(variable == "leadingTrackValid") value = object->leadingTrackValid;
2707
2708	<
2708	>	else if (variable == "looseHadronicID") {
2709	>	value = object->pt > 10
2710	>	&& object->eta < 2.3
2711	>	&& object->HPSbyLooseCombinedIsolationDeltaBetaCorr > 0
2712	>	&& object->HPSdecayModeFinding > 0
2713	>	&& object->HPSagainstElectronLoose > 0
2714	>	&& object->HPSagainstMuonTight > 0;
2715	>	}
2716
2717		else if(variable == "genDeltaRLowest") value = getGenDeltaRLowest(object);
2718
#	Line 2293 \| Line 2759 \| *OSUAnalysis::valueLookup (const BNtau o**
2759		}
2760
2761
2762	<	else{cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
2762	>	else{clog << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
2763
2764		value = applyFunction(function, value);
2765
2766		return value;
2767	<	}
2767	>	} // end tau valueLookup
2768	>
2769
2770		//!met valueLookup
2771		double
#	Line 2366 \| Line 2833 \| *OSUAnalysis::valueLookup (const BNmet o**
2833		else if(variable == "pfT1jet10pt") value = object->pfT1jet10pt;
2834		else if(variable == "pfT1jet10phi") value = object->pfT1jet10phi;
2835
2836	<	else{cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
2836	>	else{clog << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
2837
2838		value = applyFunction(function, value);
2839
2840		return value;
2841	<	}
2841	>	} // end met valueLookup
2842	>
2843
2844		//!track valueLookup
2845		double
#	Line 2399 \| Line 2867 \| OSUAnalysis::valueLookup (const BNtrack*
2867		else if(variable == "numValidHits") value = object->numValidHits;
2868		else if(variable == "isHighPurity") value = object->isHighPurity;
2869
2402	–
2870		//additional BNs info for disappTrks
2871	<	else if(variable == "caloEMDeltaRp3") value = object->caloEMDeltaRp3;
2872	<	else if(variable == "caloHadDeltaRp3") value = object->caloHadDeltaRp3;
2873	<	else if(variable == "caloEMDeltaRp4") value = object->caloEMDeltaRp4;
2874	<	else if(variable == "caloHadDeltaRp4") value = object->caloHadDeltaRp4;
2875	<	else if(variable == "caloEMDeltaRp5") value = object->caloEMDeltaRp5;
2876	<	else if(variable == "caloHadDeltaRp5") value = object->caloHadDeltaRp5;
2877	<	else if(variable == "nTracksRp5") value = object->nTracksRp5;
2878	<	else if(variable == "nHitsMissingOuter") value = object->nHitsMissingOuter;
2412	<	else if(variable == "nHitsMissingInner") value = object->nHitsMissingInner;
2871	>	else if(variable == "caloEMDeltaRp3") value = object->caloEMDeltaRp3;
2872	>	else if(variable == "caloHadDeltaRp3") value = object->caloHadDeltaRp3;
2873	>	else if(variable == "caloEMDeltaRp4") value = object->caloEMDeltaRp4;
2874	>	else if(variable == "caloHadDeltaRp4") value = object->caloHadDeltaRp4;
2875	>	else if(variable == "caloEMDeltaRp5") value = object->caloEMDeltaRp5;
2876	>	else if(variable == "caloHadDeltaRp5") value = object->caloHadDeltaRp5;
2877	>	else if(variable == "nHitsMissingOuter") value = object->nHitsMissingOuter;
2878	>	else if(variable == "nHitsMissingInner") value = object->nHitsMissingInner;
2879		else if(variable == "nHitsMissingMiddle") value = object->nHitsMissingMiddle;
2880	<	else if(variable == "depTrkRp5") value = object->depTrkRp5;
2880	>	else if(variable == "depTrkRp3") value = object->depTrkRp3;
2881	>	else if(variable == "trkRelIsoRp3") { value = (object->depTrkRp3 - object->pt) / object->pt; if (value<0) value = 0; }
2882	>	else if(variable == "trkRelIsoRp5") { value = (object->depTrkRp5 - object->pt) / object->pt; if (value<0) value = 0; }
2883	>	else if(variable == "depEcalRp3") value = object->depEcalRp3;
2884	>	else if(variable == "depHcalRp3") value = object->depHcalRp3;
2885	>	else if(variable == "depHoRp3") value = object->depHoRp3;
2886	>	else if(variable == "nTracksRp3") value = object->nTracksRp3;
2887	>	else if(variable == "trackerVetoPtRp3") value = object->trackerVetoPtRp3;
2888	>	else if(variable == "emVetoEtRp3") value = object->emVetoEtRp3;
2889	>	else if(variable == "hadVetoEtRp3") value = object->hadVetoEtRp3;
2890	>	else if(variable == "hoVetoEtRp3") value = object->hoVetoEtRp3;
2891	>	else if(variable == "depTrkRp5") value = object->depTrkRp5;
2892	>	else if(variable == "depEcalRp5") value = object->depEcalRp5;
2893	>	else if(variable == "depHcalRp5") value = object->depHcalRp5;
2894	>	else if(variable == "depHoRp5") value = object->depHoRp5;
2895	>	else if(variable == "nTracksRp5") value = object->nTracksRp5;
2896	>	else if(variable == "trackerVetoPtRp5") value = object->trackerVetoPtRp5;
2897	>	else if(variable == "emVetoEtRp5") value = object->emVetoEtRp5;
2898	>	else if(variable == "hadVetoEtRp5") value = object->hadVetoEtRp5;
2899	>	else if(variable == "hoVetoEtRp5") value = object->hoVetoEtRp5;
2900
2901		//user defined variables
2902		else if(variable == "d0wrtBS") value = (object->vx-events->at(0).BSx)object->py/object->pt - (object->vy-events->at(0).BSy)object->px/object->pt;
2903		else if(variable == "dZwrtBS") value = object->dZ - events->at(0).BSz;
2904	<	else if(variable == "depTrkRp5MinusPt") value = (object->depTrkRp5 - object->pt);
2904	>	else if(variable == "depTrkRp5MinusPt"){
2905	>	if ( (object->depTrkRp5 - object->pt) < 0 ) {
2906	>	// clog << "Warning: found track with depTrkRp5 < pt: depTrkRp5=" << object->depTrkRp5
2907	>	// << "; pt=" << object->pt
2908	>	// << "; object->depTrkRp5 - object->pt = " << object->depTrkRp5 - object->pt
2909	>	// << endl;
2910	>	value = 0;
2911	>	}
2912	>	else value = (object->depTrkRp5 - object->pt);
2913	>	}
2914	>	else if(variable == "depTrkRp3MinusPt"){
2915	>	if ( (object->depTrkRp3 - object->pt) < 0 ) {
2916	>	value = 0;
2917	>	}
2918	>	else value = (object->depTrkRp3 - object->pt);
2919	>	}
2920	>
2921	>	else if(variable == "dPhiMet") {
2922	>	if (const BNmet *met = chosenMET ()) {
2923	>	value = deltaPhi (object->phi, met->phi);
2924	>	} else value = -999;
2925	>	}
2926	>
2927	>
2928		else if(variable == "caloTotDeltaRp5") value = (object->caloHadDeltaRp5 + object->caloEMDeltaRp5);
2929		else if(variable == "caloTotDeltaRp5ByP") value = ((object->caloHadDeltaRp5 + object->caloEMDeltaRp5)/pMag);
2930		else if(variable == "caloTotDeltaRp5RhoCorr") value = getTrkCaloTotRhoCorr(object);
2931		else if(variable == "caloTotDeltaRp5ByPRhoCorr") value = getTrkCaloTotRhoCorr(object) / pMag;
2932	+	else if(variable == "depTrkRp5RhoCorr") value = getTrkDepTrkRp5RhoCorr(object);
2933	+	else if(variable == "depTrkRp3RhoCorr") value = getTrkDepTrkRp3RhoCorr(object);
2934	+
2935	+	else if(variable == "depTrkRp5MinusPtRhoCorr") {
2936	+	if ( (getTrkDepTrkRp5RhoCorr(object) - object->pt) < 0 ) value = 0;
2937	+	else {value = (getTrkDepTrkRp5RhoCorr(object) - object->pt );}
2938	+	}
2939	+
2940	+	else if(variable == "depTrkRp3MinusPtRhoCorr")
2941	+	{
2942	+	if ( (getTrkDepTrkRp3RhoCorr(object) - object->pt) < 0 ) value = 0;
2943	+	else {value = (getTrkDepTrkRp3RhoCorr(object) - object->pt );}
2944	+	}
2945	+
2946		else if(variable == "isIso") value = getTrkIsIso(object, tracks.product());
2947		else if(variable == "isMatchedDeadEcal") value = getTrkIsMatchedDeadEcal(object);
2948		else if(variable == "ptErrorByPt") value = (object->ptError/object->pt);
#	Line 2444 \| Line 2966 \| OSUAnalysis::valueLookup (const BNtrack*
2966		pt = object->pt;
2967		value = vz - (vx * px + vy * py)/pt * (pz/pt);
2968		}
2969	+
2970	+	else if(variable == "deltaRMinSubLeadJet") {
2971	+	// calculate minimum deltaR between track and any other subleading jet
2972	+	double trkJetDeltaRMin = 99.;
2973	+	for (uint ijet = 0; ijet<jets->size(); ijet++) {
2974	+	string empty = "";
2975	+	double isSubLeadingJet = valueLookup(&jets->at(ijet), "disappTrkSubLeadingJetID", "", empty);
2976	+	if (!isSubLeadingJet) continue; // only consider jets that pass the subleading jet ID criteria
2977	+	double jetEta = valueLookup(&jets->at(ijet), "eta", "", empty);
2978	+	double jetPhi = valueLookup(&jets->at(ijet), "phi", "", empty);
2979	+	double trkJetDeltaR = deltaR(object->eta, object->phi, jetEta, jetPhi);
2980	+	if (trkJetDeltaR < trkJetDeltaRMin) trkJetDeltaRMin = trkJetDeltaR;
2981	+	}
2982	+	value = trkJetDeltaRMin;
2983	+	}
2984	+
2985	+	else if(variable == "deltaRMinElecLooseMvaId") {
2986	+	// calculate minimum deltaR between track and any other electron passing loose mva ID, i.e., mvaNonTrigV0 > 0
2987	+	double trkElecDeltaRMin = 99.;
2988	+	for (uint ielec = 0; ielec<electrons->size(); ielec++) {
2989	+	string empty = "";
2990	+	double mvaNonTrigV0 = valueLookup(&electrons->at(ielec), "mvaNonTrigV0", "", empty);
2991	+	if (mvaNonTrigV0 < 0) continue; // only consider electrons with mvaNonTrigV0 > 0
2992	+	double elecEta = valueLookup(&electrons->at(ielec), "eta", "", empty);
2993	+	double elecPhi = valueLookup(&electrons->at(ielec), "phi", "", empty);
2994	+	double trkElecDeltaR = deltaR(object->eta, object->phi, elecEta, elecPhi);
2995	+	if (trkElecDeltaR < trkElecDeltaRMin) trkElecDeltaRMin = trkElecDeltaR;
2996	+	}
2997	+	value = trkElecDeltaRMin;
2998	+	}
2999	+
3000	+	else if(variable == "deltaRMinMuonLooseId") {
3001	+	// calculate minimum deltaR between track and any other loose-Id muon
3002	+	double trkMuonDeltaRMin = 99.;
3003	+	// if (!muons) cout << "ERROR: could not find muon collection for calculation of deltaRMinMuonLooseId" << endl;
3004	+	for (uint imuon = 0; imuon<muons->size(); imuon++) {
3005	+	string empty = "";
3006	+	double isLooseIdMuon = valueLookup(&muons->at(imuon), "looseID", "", empty);
3007	+	if (!isLooseIdMuon) continue; // only consider muons that pass the looseID criteria
3008	+	double muonEta = valueLookup(&muons->at(imuon), "eta", "", empty);
3009	+	double muonPhi = valueLookup(&muons->at(imuon), "phi", "", empty);
3010	+	double trkMuonDeltaR = deltaR(object->eta, object->phi, muonEta, muonPhi);
3011	+	if (trkMuonDeltaR < trkMuonDeltaRMin) trkMuonDeltaRMin = trkMuonDeltaR;
3012	+	}
3013	+	value = trkMuonDeltaRMin;
3014	+	}
3015	+
3016	+	else if(variable == "deltaRMinSecMuonLooseIdGlobal") {
3017	+	// calculate minimum deltaR between track and any other loose-Id muon
3018	+	double trkMuonDeltaRMin = 99.;
3019	+	// if (!secMuons) cout << "ERROR: could not find secondary muon collection for calculation of deltaRMinSecMuonLooseIdGlobal" << endl;
3020	+	for (uint imuon = 0; imuon<secMuons->size(); imuon++) {
3021	+	string empty = "";
3022	+	double isLooseIdMuon = valueLookup(&secMuons->at(imuon), "looseIDGlobalMuon", "", empty);
3023	+	if (!isLooseIdMuon) continue; // only consider muons that pass the looseIDGlobal criteria
3024	+	double muonEta = valueLookup(&secMuons->at(imuon), "eta", "", empty);
3025	+	double muonPhi = valueLookup(&secMuons->at(imuon), "phi", "", empty);
3026	+	double trkMuonDeltaR = deltaR(object->eta, object->phi, muonEta, muonPhi);
3027	+	if (trkMuonDeltaR < trkMuonDeltaRMin) trkMuonDeltaRMin = trkMuonDeltaR;
3028	+	}
3029	+	value = trkMuonDeltaRMin;
3030	+	}
3031	+
3032	+	else if(variable == "deltaRMinTauLooseHadronicId") {
3033	+	// calculate minimum deltaR between track and any other tau passing loose hadronic ID
3034	+	double trkTauDeltaRMin = 99.;
3035	+	// if (!taus) cout << "ERROR: could not find tau collection for calculation of deltaRMinTauLooseHadronicId" << endl;
3036	+	for (uint itau = 0; itau<taus->size(); itau++) {
3037	+	string empty = "";
3038	+	double isIdTau = valueLookup(&taus->at(itau), "looseHadronicID", "", empty);
3039	+	if (!isIdTau) continue; // only consider taus that pass the loose hadronic ID criteria
3040	+	double tauEta = valueLookup(&taus->at(itau), "eta", "", empty);
3041	+	double tauPhi = valueLookup(&taus->at(itau), "phi", "", empty);
3042	+	double trkTauDeltaR = deltaR(object->eta, object->phi, tauEta, tauPhi);
3043	+	if (trkTauDeltaR < trkTauDeltaRMin) trkTauDeltaRMin = trkTauDeltaR;
3044	+	}
3045	+	value = trkTauDeltaRMin;
3046	+	}
3047	+
3048		else if(variable == "genDeltaRLowest") value = getGenDeltaRLowest(object);
3049
3050		else if(variable == "genMatchedPdgId"){
#	Line 2491 \| Line 3092 \| OSUAnalysis::valueLookup (const BNtrack*
3092
3093
3094
3095	<	else{cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
3095	>	else{clog << "WARNING: invalid variable '" << variable << "' for BNtrack collection.\n"; value = -999;}
3096
3097		value = applyFunction(function, value);
3098
3099		return value;
3100	<	}
3100	>	} // end track valueLookup
3101	>
3102
3103		//!genjet valueLookup
3104		double
#	Line 2520 \| Line 3122 \| OSUAnalysis::valueLookup (const BNgenjet
3122		else if(variable == "charge") value = object->charge;
3123
3124
3125	<	else{cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
3125	>	else{clog << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
3126
3127		value = applyFunction(function, value);
3128
#	Line 2654 \| Line 3256 \| OSUAnalysis::valueLookup (const BNmcpart
3256		}
3257
3258
3259	<	else{cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
3259	>	else{clog << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
3260
3261		value = applyFunction(function, value);
3262
3263		return value;
3264	<	}
3264	>	} // end mcparticle valueLookup
3265	>
3266
3267		//!primaryvertex valueLookup
3268		double
#	Line 2682 \| Line 3285 \| OSUAnalysis::valueLookup (const BNprimar
3285		else if(variable == "isGood") value = object->isGood;
3286
3287
3288	<	else{cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
3288	>	else{clog << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
3289
3290		value = applyFunction(function, value);
3291
#	Line 2700 \| Line 3303 \| OSUAnalysis::valueLookup (const BNbxlumi
3303		else if(variable == "bx_LUMI_now") value = object->bx_LUMI_now;
3304
3305
3306	<	else{cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
3306	>	else{clog << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
3307
3308		value = applyFunction(function, value);
3309
#	Line 2833 \| Line 3436 \| OSUAnalysis::valueLookup (const BNphoton
3436		}
3437
3438
3439	<	else{cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
3439	>	else{clog << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
3440
3441		value = applyFunction(function, value);
3442
3443		return value;
3444	<	}
3444	>	} // end photon valueLookup
3445	>
3446
3447		//!supercluster valueLookup
3448		double
#	Line 2856 \| Line 3460 \| OSUAnalysis::valueLookup (const BNsuperc
3460		else if(variable == "theta") value = object->theta;
3461
3462
3463	<	else{cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
3463	>	else{clog << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
3464
3465		value = applyFunction(function, value);
3466
#	Line 2890 \| Line 3494 \| OSUAnalysis::valueLookup (const BNtrigob
3494		stringValue = "none"; // stringValue should only be empty if value is filled
3495		}
3496
3497	<	else{cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
3497	>	else{clog << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
3498
3499		value = applyFunction(function, value);
3500
#	Line 2961 \| Line 3565 \| OSUAnalysis::valueLookup (const BNmuon*
3565		value = object2->correctedD0;
3566		}
3567
3568	<	else{cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
3568	>	else{clog << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
3569	>
3570	>	value = applyFunction(function, value);
3571	>
3572	>	return value;
3573	>	} // end muon-muon pair valueLookup
3574	>
3575	>
3576	>	//!muon-photon pair valueLookup
3577	>	double
3578	>	OSUAnalysis::valueLookup (const BNmuon* object1, const BNphoton* object2, string variable, string function, string &stringValue){
3579	>
3580	>	double value = 0.0;
3581	>
3582	>	if(variable == "deltaPhi") value = fabs(deltaPhi(object1->phi,object2->phi));
3583	>	else if(variable == "deltaEta") value = fabs(object1->eta - object2->eta);
3584	>	else if(variable == "photonEta") value = object2->eta;
3585	>	else if(variable == "photonPt") value = object2->pt;
3586	>	else if(variable == "muonEta") value = object1->eta;
3587	>	else if(variable == "photonPhi") value = object2->phi;
3588	>	else if(variable == "muonPhi") value = object1->phi;
3589	>	else if(variable == "deltaR") value = deltaR(object1->eta,object1->phi,object2->eta,object2->phi);
3590	>	else if(variable == "photonGenMotherId") value = object2->genMotherId;
3591	>	else if(variable == "muonRelPFdBetaIso") value = (object1->pfIsoR04SumChargedHadronPt + max(0.0, object1->pfIsoR04SumNeutralHadronEt + object1->pfIsoR04SumPhotonEt - 0.5*object1->pfIsoR04SumPUPt)) / object1->pt;
3592	>	else if(variable == "invMass"){
3593	>	TLorentzVector fourVector1(object1->px, object1->py, object1->pz, object1->energy);
3594	>	TLorentzVector fourVector2(object2->px, object2->py, object2->pz, object2->energy);
3595	>	value = (fourVector1 + fourVector2).M();
3596	>	}
3597	>	else if(variable == "pt"){
3598	>	TLorentzVector fourVector1(object1->px, object1->py, object1->pz, object1->energy);
3599	>	TLorentzVector fourVector2(object2->px, object2->py, object2->pz, object2->energy);
3600	>	value = (fourVector1 + fourVector2).Pt();
3601	>	}
3602	>	else if(variable == "threeDAngle")
3603	>	{
3604	>	TVector3 threeVector1(object1->px, object1->py, object1->pz);
3605	>	TVector3 threeVector2(object2->px, object2->py, object2->pz);
3606	>	value = (threeVector1.Angle(threeVector2));
3607	>	}
3608	>	else if(variable == "alpha")
3609	>	{
3610	>	static const double pi = 3.1415926535897932384626433832795028841971693993751058;
3611	>	TVector3 threeVector1(object1->px, object1->py, object1->pz);
3612	>	TVector3 threeVector2(object2->px, object2->py, object2->pz);
3613	>	value = (pi-threeVector1.Angle(threeVector2));
3614	>	}
3615	>	else{clog << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
3616	>
3617	>	value = applyFunction(function, value);
3618	>
3619	>	return value;
3620	>	}
3621	>
3622	>	//!electron-photon pair valueLookup
3623	>	double
3624	>	OSUAnalysis::valueLookup (const BNelectron* object1, const BNphoton* object2, string variable, string function, string &stringValue){
3625	>
3626	>	double value = 0.0;
3627	>
3628	>	if(variable == "deltaPhi") value = fabs(deltaPhi(object1->phi,object2->phi));
3629	>	else if(variable == "deltaEta") value = fabs(object1->eta - object2->eta);
3630	>	else if(variable == "photonEta") value = object2->eta;
3631	>	else if(variable == "photonPt") value = object2->pt;
3632	>	else if(variable == "electronEta") value = object1->eta;
3633	>	else if(variable == "photonPhi") value = object2->phi;
3634	>	else if(variable == "electronPhi") value = object1->phi;
3635	>	else if(variable == "deltaR") value = deltaR(object1->eta,object1->phi,object2->eta,object2->phi);
3636	>	else if(variable == "photonGenMotherId") value = object2->genMotherId;
3637	>	else if(variable == "electronRelPFrhoIso") value = ( object1->chargedHadronIsoDR03 + max(0.0, object1->neutralHadronIsoDR03 + object1->photonIsoDR03 - object1->AEffDr03*object1->rhoPrime) ) / object1->pt;
3638	>	else if(variable == "invMass"){
3639	>	TLorentzVector fourVector1(object1->px, object1->py, object1->pz, object1->energy);
3640	>	TLorentzVector fourVector2(object2->px, object2->py, object2->pz, object2->energy);
3641	>	value = (fourVector1 + fourVector2).M();
3642	>	}
3643	>	else if(variable == "pt"){
3644	>	TLorentzVector fourVector1(object1->px, object1->py, object1->pz, object1->energy);
3645	>	TLorentzVector fourVector2(object2->px, object2->py, object2->pz, object2->energy);
3646	>	value = (fourVector1 + fourVector2).Pt();
3647	>	}
3648	>	else if(variable == "threeDAngle")
3649	>	{
3650	>	TVector3 threeVector1(object1->px, object1->py, object1->pz);
3651	>	TVector3 threeVector2(object2->px, object2->py, object2->pz);
3652	>	value = (threeVector1.Angle(threeVector2));
3653	>	}
3654	>	else if(variable == "alpha")
3655	>	{
3656	>	static const double pi = 3.1415926535897932384626433832795028841971693993751058;
3657	>	TVector3 threeVector1(object1->px, object1->py, object1->pz);
3658	>	TVector3 threeVector2(object2->px, object2->py, object2->pz);
3659	>	value = (pi-threeVector1.Angle(threeVector2));
3660	>	}
3661	>	else{clog << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
3662
3663		value = applyFunction(function, value);
3664
#	Line 3017 \| Line 3714 \| OSUAnalysis::valueLookup (const BNelectr
3714		value = object2->correctedD0;
3715		}
3716
3717	<	else{cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
3717	>	else{clog << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
3718
3719		value = applyFunction(function, value);
3720
3721		return value;
3722		}
3723	+
3724		//!electron-muon pair valueLookup
3725		double
3726		OSUAnalysis::valueLookup (const BNelectron* object1, const BNmuon* object2, string variable, string function, string &stringValue){
#	Line 3083 \| Line 3781 \| OSUAnalysis::valueLookup (const BNelectr
3781		else if(variable == "muonRelPFdBetaIso"){
3782		value = (object2->pfIsoR04SumChargedHadronPt + max(0.0, object2->pfIsoR04SumNeutralHadronEt + object2->pfIsoR04SumPhotonEt - 0.5*object2->pfIsoR04SumPUPt)) / object2->pt;
3783		}
3784	<	else{cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
3784	>	else{clog << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
3785		value = applyFunction(function, value);
3786
3787		return value;
3788	<	}
3788	>	} // end electron-muon pair valueLookup
3789
3790	+
3791		//!electron-jet pair valueLookup
3792		double
3793		OSUAnalysis::valueLookup (const BNelectron* object1, const BNjet* object2, string variable, string function, string &stringValue){
#	Line 3122 \| Line 3821 \| OSUAnalysis::valueLookup (const BNelectr
3821		value = object1->charge*object2->charge;
3822		}
3823
3824	<	else{cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
3824	>	else{clog << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
3825	>	value = applyFunction(function, value);
3826	>
3827	>	return value;
3828	>	}
3829	>
3830	>	//!electron-mcparticle pair valueLookup
3831	>	double
3832	>	OSUAnalysis::valueLookup (const BNelectron* object1, const BNmcparticle* object2, string variable, string function, string &stringValue){
3833	>
3834	>	double value = 0.0;
3835	>
3836	>	if(variable == "deltaPhi") value = fabs(deltaPhi(object1->phi,object2->phi));
3837	>	else if(variable == "deltaEta") value = fabs(object1->eta - object2->eta);
3838	>	else if(variable == "deltaR") value = deltaR(object1->eta,object1->phi,object2->eta,object2->phi);
3839	>	else if(variable == "threeDAngle")
3840	>	{
3841	>	TVector3 threeVector1(object1->px, object1->py, object1->pz);
3842	>	TVector3 threeVector2(object2->px, object2->py, object2->pz);
3843	>	value = (threeVector1.Angle(threeVector2));
3844	>	}
3845	>	else if(variable == "chargeProduct"){
3846	>	value = object1->charge*object2->charge;
3847	>	}
3848	>
3849	>	else{clog << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
3850	>	value = applyFunction(function, value);
3851	>
3852	>	return value;
3853	>	}
3854	>
3855	>
3856	>	//!photon-jet pair valueLookup
3857	>	double
3858	>	OSUAnalysis::valueLookup (const BNphoton* object1, const BNjet* object2, string variable, string function, string &stringValue){
3859	>
3860	>	double value = 0.0;
3861	>
3862	>	if(variable == "deltaPhi") value = fabs(deltaPhi(object1->phi,object2->phi));
3863	>	else if(variable == "deltaEta") value = fabs(object1->eta - object2->eta);
3864	>	else if(variable == "jetEta") value = object2->eta;
3865	>	else if(variable == "jetPhi") value = object2->phi;
3866	>	else if(variable == "photonEta") value = object1->eta;
3867	>	else if(variable == "photonPhi") value = object1->phi;
3868	>	else if(variable == "photonGenMotherId") value = object1->genMotherId;
3869	>	else if(variable == "deltaR") value = deltaR(object1->eta,object1->phi,object2->eta,object2->phi);
3870	>	else if(variable == "invMass"){
3871	>	TLorentzVector fourVector1(object1->px, object1->py, object1->pz, object1->energy);
3872	>	TLorentzVector fourVector2(object2->px, object2->py, object2->pz, object2->energy);
3873	>	value = (fourVector1 + fourVector2).M();
3874	>	}
3875	>	else if(variable == "pt"){
3876	>	TLorentzVector fourVector1(object1->px, object1->py, object1->pz, object1->energy);
3877	>	TLorentzVector fourVector2(object2->px, object2->py, object2->pz, object2->energy);
3878	>	value = (fourVector1 + fourVector2).Pt();
3879	>	}
3880	>	else if(variable == "threeDAngle")
3881	>	{
3882	>	TVector3 threeVector1(object1->px, object1->py, object1->pz);
3883	>	TVector3 threeVector2(object2->px, object2->py, object2->pz);
3884	>	value = (threeVector1.Angle(threeVector2));
3885	>	}
3886	>	else{clog << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
3887	>	value = applyFunction(function, value);
3888	>
3889	>	return value;
3890	>	}
3891	>
3892	>	// track-jet pair valueLookup
3893	>	double
3894	>	OSUAnalysis::valueLookup (const BNtrack* object1, const BNjet* object2, string variable, string function, string &stringValue){
3895	>
3896	>	double value = 0.0;
3897	>
3898	>	if(variable == "deltaPhi") value = fabs(deltaPhi(object1->phi,object2->phi));
3899	>	else if(variable == "deltaR") value = deltaR(object1->eta,object1->phi,object2->eta,object2->phi);
3900	>
3901	>	else{clog << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
3902		value = applyFunction(function, value);
3903
3904		return value;
3905	+
3906		}
3907
3908	+
3909	+
3910	+	// met-jet pair valueLookup
3911	+	double
3912	+	OSUAnalysis::valueLookup (const BNmet* object1, const BNjet* object2, string variable, string function, string &stringValue){
3913	+
3914	+	double value = 0.0;
3915	+
3916	+	if(variable == "deltaPhi") value = fabs(deltaPhi(object1->phi,object2->phi));
3917	+
3918	+	else{clog << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
3919	+	value = applyFunction(function, value);
3920	+
3921	+	return value;
3922	+
3923	+	}
3924	+
3925	+
3926	+
3927		//!muon-jet pair valueLookup
3928		double
3929		OSUAnalysis::valueLookup (const BNmuon* object1, const BNjet* object2, string variable, string function, string &stringValue){
#	Line 3136 \| Line 3932 \| OSUAnalysis::valueLookup (const BNmuon*
3932
3933		if(variable == "deltaPhi") value = fabs(deltaPhi(object1->phi,object2->phi));
3934		else if(variable == "jetEta") value = object2->eta;
3935	+	else if(variable == "relPFdBetaIso") value = (object1->pfIsoR04SumChargedHadronPt + max(0.0, object1->pfIsoR04SumNeutralHadronEt + object1->pfIsoR04SumPhotonEt - 0.5*object1->pfIsoR04SumPUPt)) / object1->pt;
3936	+	else if(variable == "jetPt") value = object2->pt;
3937		else if(variable == "jetPhi") value = object2->phi;
3938	+	else if(variable == "deltaPt") value = object1->pt - object2->pt;
3939		else if(variable == "muonEta") value = object1->eta;
3940	+	else if(variable == "muonPt") value = object1->pt;
3941		else if(variable == "muonPhi") value = object1->phi;
3942	<	else if(variable == "deltaEta") value = fabs(object1->eta - object2->eta);
3942	>	else if(variable == "deltaEta") value = fabs(object1->eta - object2->eta);
3943		else if(variable == "deltaR") value = deltaR(object1->eta,object1->phi,object2->eta,object2->phi);
3944		else if(variable == "invMass"){
3945		TLorentzVector fourVector1(object1->px, object1->py, object1->pz, object1->energy);
#	Line 3161 \| Line 3961 \| OSUAnalysis::valueLookup (const BNmuon*
3961		value = object1->charge*object2->charge;
3962		}
3963
3964	<	else{cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
3964	>	else{clog << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
3965		value = applyFunction(function, value);
3966
3967		return value;
3968		}
3969
3970	+	//!muon-event valueLookup
3971	+	double
3972	+	OSUAnalysis::valueLookup (const BNmuon* object1, const BNevent* object2, string variable, string function, string &stringValue){
3973	+
3974	+	double value = 0.0;
3975	+
3976	+	if(variable == "muonEta") value = object1->eta;
3977	+	else if(variable == "muonPt") value = object1->pt;
3978	+	else if(variable == "muonPhi") value = object1->phi;
3979	+	else if(variable == "Ht") value = getHt(jets.product());
3980	+	else if(variable == "pthat") value = object2->pthat;
3981	+	else if(variable == "relPFdBetaIso") value = (object1->pfIsoR04SumChargedHadronPt + max(0.0, object1->pfIsoR04SumNeutralHadronEt + object1->pfIsoR04SumPhotonEt - 0.5*object1->pfIsoR04SumPUPt)) / object1->pt;
3982	+	else{clog << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
3983	+	value = applyFunction(function, value);
3984	+
3985	+	return value;
3986	+	}
3987		//!jet-jet pair valueLookup
3988		double
3989		OSUAnalysis::valueLookup (const BNjet* object1, const BNjet* object2, string variable, string function, string &stringValue){
#	Line 3175 \| Line 3992 \| *OSUAnalysis::valueLookup (const BNjet o**
3992
3993		if(variable == "deltaPhi") value = fabs(deltaPhi(object1->phi,object2->phi));
3994		else if(variable == "deltaEta") value = fabs(object1->eta - object2->eta);
3995	<	else if(variable == "absDeltaPt") value = fabs(object1->pt - object2->pt);
3995	>	else if(variable == "deltaPt") value = object1->pt - object2->pt;
3996		else if(variable == "deltaR") value = deltaR(object1->eta,object1->phi,object2->eta,object2->phi);
3997		else if(variable == "invMass"){
3998		TLorentzVector fourVector1(object1->px, object1->py, object1->pz, object1->energy);
#	Line 3197 \| Line 4014 \| *OSUAnalysis::valueLookup (const BNjet o**
4014		value = object1->charge*object2->charge;
4015		}
4016
4017	<	else{cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
4017	>	else{clog << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
4018		value = applyFunction(function, value);
4019
4020		return value;
4021		}
4022	+
4023		//!electron-track pair valueLookup
4024		double
4025		OSUAnalysis::valueLookup (const BNelectron* object1, const BNtrack* object2, string variable, string function, string &stringValue){
#	Line 3212 \| Line 4030 \| OSUAnalysis::valueLookup (const BNelectr
4030		if(variable == "deltaPhi") value = fabs(deltaPhi(object1->phi,object2->phi));
4031		else if(variable == "deltaEta") value = fabs(object1->eta - object2->eta);
4032		else if(variable == "deltaR") value = deltaR(object1->eta,object1->phi,object2->eta,object2->phi);
4033	+	else if(variable == "deltaRLooseMvaId") {
4034	+	// only consider electrons that pass "loose MVA id", i.e., mvaNonTrigV0 > 0;
4035	+	// otherwise return very large value (99)
4036	+	if (object1->mvaNonTrigV0>0) value = deltaR(object1->eta,object1->phi,object2->eta,object2->phi);
4037	+	else value = 99.;
4038	+	}
4039		else if(variable == "invMass"){
4040		fourVector1.SetPtEtaPhiM(object1->pt, object1->eta, object1->phi, electronMass);
4041		fourVector2.SetPtEtaPhiM(object2->pt, object2->eta, object2->phi, electronMass );
#	Line 3221 \| Line 4045 \| OSUAnalysis::valueLookup (const BNelectr
4045		else if(variable == "chargeProduct"){
4046		value = object1->charge*object2->charge;
4047		}
4048	<	else{std::cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
4048	>	else{clog << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
4049		value = applyFunction(function, value);
4050		return value;
4051
#	Line 3239 \| Line 4063 \| OSUAnalysis::valueLookup (const BNmuon*
4063		if(variable == "deltaPhi") value = fabs(deltaPhi(object1->phi,object2->phi));
4064		else if(variable == "deltaEta") value = fabs(object1->eta - object2->eta);
4065		else if(variable == "deltaR") value = deltaR(object1->eta,object1->phi,object2->eta,object2->phi);
4066	+	else if(variable == "deltaRLooseID") {
4067	+	// only consider muons that pass looseId criteria; otherwise return very large value (99.)
4068	+	string empty = "";
4069	+	double isLooseId = valueLookup(object1, "looseID", "", empty);
4070	+	if (isLooseId) value = deltaR(object1->eta,object1->phi,object2->eta,object2->phi);
4071	+	else value = 99.;
4072	+	}
4073	+	else if(variable == "deltaRGlobalMuon") {
4074	+	// only consider muons that pass looseId criteria; otherwise return very large value (99.)
4075	+	if (object1->isGlobalMuon) value = deltaR(object1->eta,object1->phi,object2->eta,object2->phi);
4076	+	else value = 99.;
4077	+	}
4078		else if(variable == "invMass"){
4079		fourVector1.SetPtEtaPhiM(object1->pt, object1->eta, object1->phi, muonMass);
4080		fourVector2.SetPtEtaPhiM(object2->pt, object2->eta, object2->phi, pionMass );
#	Line 3249 \| Line 4085 \| OSUAnalysis::valueLookup (const BNmuon*
4085		value = object1->charge*object2->charge;
4086		}
4087
4088	<	else{std::cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
4088	>	else{clog << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
4089		value = applyFunction(function, value);
4090		return value;
4091		}
#	Line 3271 \| Line 4107 \| *OSUAnalysis::valueLookup (const BNtau o**
4107		value = object1->charge*object2->charge;
4108		}
4109
4110	<	else{std::cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
4110	>	else{clog << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
4111		value = applyFunction(function, value);
4112		return value;
4113		}
#	Line 3293 \| Line 4129 \| OSUAnalysis::valueLookup (const BNmuon*
4129		value = object1->charge*object2->charge;
4130		}
4131
4132	<	else{std::cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
4132	>	else{clog << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
4133		value = applyFunction(function, value);
4134		return value;
4135		}
#	Line 3304 \| Line 4140 \| *OSUAnalysis::valueLookup (const BNtau o**
4140		double value = 0.0;
4141		if(variable == "deltaPhi") value = fabs(deltaPhi(object1->phi,object2->phi));
4142		else if(variable == "deltaR") value = deltaR(object1->eta,object1->phi,object2->eta,object2->phi);
4143	+	else if(variable == "deltaRLooseHadronicID") {
4144	+	// only consider tau's that pass the loose hadronic ID criteria; otherwise return very large value (99)
4145	+	string empty = "";
4146	+	double isLooseHadronicID = valueLookup(object1, "looseHadronicID", "", empty);
4147	+
4148	+	if (isLooseHadronicID) value = deltaR(object1->eta,object1->phi,object2->eta,object2->phi);
4149	+	else value = 99.;
4150	+	}
4151		else if(variable == "chargeProduct"){
4152		value = object1->charge*object2->charge;
4153		}
4154
4155	<	else{std::cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
4155	>	else{clog << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
4156		value = applyFunction(function, value);
4157		return value;
4158		}
#	Line 3328 \| Line 4172 \| OSUAnalysis::valueLookup (const BNtrack*
4172		else if (variable == "caloTotDeltaRp5_RhoCorr") value = getTrkCaloTotRhoCorr(object1);
4173		else if (variable == "caloTotDeltaRp5ByP_RhoCorr") value = getTrkCaloTotRhoCorr(object1) / pMag;
4174
4175	<	else { cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999; }
4175	>	else { clog << "WARNING: invalid variable '" << variable << "'\n"; value = -999; }
4176
4177		value = applyFunction(function, value);
4178
#	Line 3350 \| Line 4194 \| OSUAnalysis::valueLookup (const BNelectr
4194		stringValue = "none";
4195		}
4196
4197	<	else { cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999; }
4197	>	else { clog << "WARNING: invalid variable '" << variable << "'\n"; value = -999; }
4198
4199		value = applyFunction(function, value);
4200
#	Line 3366 \| Line 4210 \| OSUAnalysis::valueLookup (const BNmuon*
4210
4211		if (variable == "deltaR") value = deltaR(object1->eta,object1->phi,object2->eta,object2->phi);
4212
4213	<	else { cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999; }
4213	>	else { clog << "WARNING: invalid variable '" << variable << "'\n"; value = -999; }
4214
4215		value = applyFunction(function, value);
4216
#	Line 3469 \| Line 4313 \| OSUAnalysis::valueLookup (const BNstop*
4313		for(BNprimaryvertexCollection::const_iterator vertex = primaryvertexs->begin (); vertex != primaryvertexs->end (); vertex++){
4314		vertex_rank++;
4315		int dist = sqrt((object->vx-vertex->x)*(object->vx-vertex->x) + \
4316	<	(object->vy-vertex->y)*(object->vy-vertex->y) + \
4317	<	(object->vz-vertex->z)*(object->vz-vertex->z));
4316	>	(object->vy-vertex->y)*(object->vy-vertex->y) + \
4317	>	(object->vz-vertex->z)*(object->vz-vertex->z));
4318
4319		if(abs(dist) < abs(minDistToVertex)){
4320		value = vertex_rank;
#	Line 3479 \| Line 4323 \| OSUAnalysis::valueLookup (const BNstop*
4323		}
4324		}
4325
4326	+	else if (variable == "decaysToTau"){
4327	+	value = abs (object->daughter0Id) == 15 \|\| abs (object->daughter1Id) == 15;
4328	+	}
4329
4330
4331
4332	<	else { cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999; }
4332	>
4333	>	else { clog << "WARNING: invalid variable '" << variable << "'\n"; value = -999; }
4334
4335		value = applyFunction(function, value);
4336
4337		return value;
4338
4339	<	}
4339	>	} // end stop valueLookup
4340	>
4341
4342
4343
#	Line 3506 \| Line 4355 \| OSUAnalysis::getTrkIsIso (const BNtrack*
4355
4356		}
4357
4358	+	//calculate the scalar sum of Jet Pt in the event.
4359	+	double
4360	+	OSUAnalysis::getHt (const BNjetCollection* jetColl){
4361	+	double Ht = 0;
4362	+	for(BNjetCollection::const_iterator jet = jetColl->begin(); jet !=jetColl->end(); jet++){
4363	+	Ht += abs(jet->pt);
4364	+	}
4365	+	return Ht;
4366	+	}
4367
4368		double
4369		OSUAnalysis::getTrkPtRes (const BNtrack* track1){
#	Line 3543 \| Line 4401 \| OSUAnalysis::getTrkCaloTotRhoCorr(const
4401		// Return the pile-up (rho) corrected isolation energy, i.e., the total calorimeter energy around the candidate track.
4402		if (!useTrackCaloRhoCorr_) return -99;
4403		// if (!rhokt6CaloJetsHandle_) {
4404	<	// cout << "ERROR [getTrkCaloTotRhoCorr]: The collection rhokt6CaloJetsHandle is not available!" << endl;
4404	>	// clog << "ERROR [getTrkCaloTotRhoCorr]: The collection rhokt6CaloJetsHandle is not available!" << endl;
4405		// return -99;
4406		// }
4407		double radDeltaRCone = 0.5;
#	Line 3554 \| Line 4412 \| OSUAnalysis::getTrkCaloTotRhoCorr(const
4412
4413		}
4414
4415	+	double
4416	+	OSUAnalysis::getTrkDepTrkRp5RhoCorr(const BNtrack* track) {
4417	+	// Return the pile-up (rho) corrected isolation energy, i.e., the total calorimeter energy around the candidate track.
4418	+	if (!useTrackCaloRhoCorr_) return -99;
4419	+	// if (!rhokt6CaloJetsHandle_) {
4420	+	// clog << "ERROR [getTrkCaloTotRhoCorr]: The collection rhokt6CaloJetsHandle is not available!" << endl;
4421	+	// return -99;
4422	+	// }
4423	+	double radDeltaRCone = 0.5;
4424	+	double rhoCorr_kt6CaloJets = rhokt6CaloJetsHandle_ TMath::Pi() * pow(radDeltaRCone, 2); // Define effective area as pi*r^2, where r is radius of DeltaR cone.
4425	+	double rawDepTrkRp5 = track->depTrkRp5;
4426	+	double depTrkRp5RhoCorr = TMath::Max(0., rawDepTrkRp5 - rhoCorr_kt6CaloJets);
4427	+	return depTrkRp5RhoCorr;
4428	+
4429	+	}
4430	+
4431	+	double
4432	+	OSUAnalysis::getTrkDepTrkRp3RhoCorr(const BNtrack* track) {
4433	+	// Return the pile-up (rho) corrected isolation energy, i.e., the total calorimeter energy around the candidate track.
4434	+	if (!useTrackCaloRhoCorr_) return -99;
4435	+	// if (!rhokt6CaloJetsHandle_) {
4436	+	// clog << "ERROR [getTrkCaloTotRhoCorr]: The collection rhokt6CaloJetsHandle is not available!" << endl;
4437	+	// return -99;
4438	+	// }
4439	+	double radDeltaRCone = 0.3;
4440	+	// Define effective area as pi*r^2, where r is radius of DeltaR cone
4441	+	double rhoCorr_kt6CaloJets = rhokt6CaloJetsHandle_ TMath::Pi() * pow(radDeltaRCone, 2);
4442	+	double rawDepTrkRp3 = track->depTrkRp3;
4443	+	double depTrkRp3RhoCorr = TMath::Max(0., rawDepTrkRp3 - rhoCorr_kt6CaloJets);
4444	+	return depTrkRp3RhoCorr;
4445	+
4446	+	}
4447	+
4448
4449
4450
#	Line 3565 \| Line 4456 \| OSUAnalysis::WriteDeadEcal (){
4456		double etaEcal, phiEcal;
4457		ifstream DeadEcalFile(deadEcalFile_);
4458		if(!DeadEcalFile) {
4459	<	cout << "Error: DeadEcalFile has not been found." << endl;
4459	>	clog << "Error: DeadEcalFile has not been found." << endl;
4460		return;
4461		}
4462		if(DeadEcalVec.size()!= 0){
4463	<	cout << "Error: DeadEcalVec has a nonzero size" << endl;
4463	>	clog << "Error: DeadEcalVec has a nonzero size" << endl;
4464		return;
4465		}
4466		while(!DeadEcalFile.eof())
#	Line 3580 \| Line 4471 \| OSUAnalysis::WriteDeadEcal (){
4471		newChan.phiEcal = phiEcal;
4472		DeadEcalVec.push_back(newChan);
4473		}
4474	<	if(DeadEcalVec.size() == 0) cout << "Warning: No dead Ecal channels have been found." << endl;
4474	>	if(DeadEcalVec.size() == 0) clog << "Warning: No dead Ecal channels have been found." << endl;
4475		}
4476
4477		//if a track is found within dR<0.05 of a dead Ecal channel value = 1, otherwise value = 0
#	Line 3620 \| Line 4511 \| OSUAnalysis::applyFunction(string functi
4511		else if(function == "log") value = log10(value);
4512
4513		else if(function == "") value = value;
4514	<	else{cout << "WARNING: invalid function '" << function << "'\n";}
4514	>	else{clog << "WARNING: invalid function '" << function << "'\n";}
4515
4516		return value;
4517
#	Line 3630 \| Line 4521 \| OSUAnalysis::applyFunction(string functi
4521		template <class InputCollection>
4522		void OSUAnalysis::setObjectFlags(cut &currentCut, uint currentCutIndex, flagMap &individualFlags, flagMap &cumulativeFlags, InputCollection inputCollection, string inputType){
4523
4524	+	if (verbose_>2) clog << " Beginning setObjectFlags for cut " << currentCutIndex << ": " << currentCut.name
4525	+	<< ", inputType=" << inputType
4526	+	<< endl;
4527		if (currentCut.inputCollection.find("pair")!=string::npos) {
4528		string obj1, obj2;
4529		getTwoObjs(currentCut.inputCollection, obj1, obj2);
4530	+	if (verbose_>2) clog << " Two object types: " << obj1 << ", " << obj2 << endl;
4531		if (inputType==obj1 \|\|
4532	<	inputType==obj2) {
4532	>	inputType==obj2) {
4533		// Do not add a cut to individualFlags or cumulativeFlags, if the cut is on a paired collection,
4534		// and the inputType is a member of the pair.
4535		// The cut will instead be applied when the setObjectFlags() is called for the paired collection.
#	Line 3644 \| Line 4539 \| void OSUAnalysis::setObjectFlags(cut &cu
4539		}
4540		}
4541
4542	+	if (!inputCollection) cout << "ERROR: invalid input collection for inputType=" << inputType << endl;
4543	+
4544	+	if (verbose_>3) clog << " Collection size: " << inputCollection->size() << endl;
4545	+
4546		for (uint object = 0; object != inputCollection->size(); object++){
4547
4548	<	bool decision = true;//object passes if this cut doesn't cut on that type of object
4548	>	if (verbose_>4) clog << " Setting flags for object " << object << endl;
4549	>
4550	>	bool cutDecision = true;//object passes if this cut doesn't cut on that type of object
4551	>	bool plotDecision = true;
4552
4553		if(currentCut.inputCollection == inputType){
4554
#	Line 3658 \| Line 4560 \| void OSUAnalysis::setObjectFlags(cut &cu
4560		else subcutDecisions.push_back(evaluateComparison(stringValue,currentCut.comparativeOperators.at(subcutIndex),currentCut.cutStringValues.at(subcutIndex)));
4561
4562		}
4563	<	if(currentCut.numSubcuts == 1) decision = subcutDecisions.at(0);
4563	>	if(currentCut.numSubcuts == 1) cutDecision = subcutDecisions.at(0);
4564		else{
4565		bool tempDecision = true;
4566		for( int subcutIndex = 0;subcutIndex != currentCut.numSubcuts-1; subcutIndex++){
#	Line 3667 \| Line 4569 \| void OSUAnalysis::setObjectFlags(cut &cu
4569		else if(currentCut.logicalOperators.at(subcutIndex) == "\|"\|\| currentCut.logicalOperators.at(subcutIndex) == "\|\|")
4570		tempDecision = subcutDecisions.at(subcutIndex) \|\| subcutDecisions.at(subcutIndex+1);
4571		}
4572	<	decision = tempDecision;
4572	>	cutDecision = tempDecision;
4573		}
4574	+	//invert the cut if this cut is a veto
4575	+	if(currentCut.isVeto) cutDecision = !cutDecision;
4576	+	plotDecision = cutDecision;
4577		}
4578
4579	<	individualFlags.at(inputType).at(currentCutIndex).push_back(decision);
4579	>	individualFlags.at(inputType).at(currentCutIndex).push_back(make_pair(cutDecision,plotDecision));
4580
4581	<	//set flags for objects that pass each cut AND all the previous cuts
4582	<	bool previousCumulativeFlag = true;
4581	>	//set flags for objects that pass this cut AND all the previous cuts
4582	>	bool previousCumulativeCutFlag = true;
4583		for(uint previousCutIndex = 0; previousCutIndex != currentCutIndex; previousCutIndex++){
4584	<	if(previousCumulativeFlag && individualFlags.at(inputType).at(previousCutIndex).at(object)) previousCumulativeFlag = true;
4585	<	else{ previousCumulativeFlag = false; break;}
4584	>	if(previousCumulativeCutFlag && individualFlags.at(inputType).at(previousCutIndex).at(object).first) previousCumulativeCutFlag = true;
4585	>	else{ previousCumulativeCutFlag = false; break;}
4586		}
4587	<	cumulativeFlags.at(inputType).at(currentCutIndex).push_back(previousCumulativeFlag && decision);
4587	>	previousCumulativeCutFlag = previousCumulativeCutFlag && cutDecision;
4588	>	bool previousCumulativePlotFlag = true;
4589	>	for(uint previousCutIndex = 0; previousCutIndex != currentCutIndex; previousCutIndex++){
4590	>	if(previousCumulativePlotFlag && individualFlags.at(inputType).at(previousCutIndex).at(object).second) previousCumulativePlotFlag = true;
4591	>	else{ previousCumulativePlotFlag = false; break;}
4592	>	}
4593	>	previousCumulativePlotFlag = previousCumulativePlotFlag && plotDecision;
4594
4595	<	}
4595	>	cumulativeFlags.at(inputType).at(currentCutIndex).push_back(make_pair(previousCumulativeCutFlag,previousCumulativePlotFlag));
4596
4597	<	}
4597	>	} // for (uint object = 0; object != inputCollection->size(); object++){
4598
4599	+	} // end void OSUAnalysis::setObjectFlags
4600
3689	–	template <class InputCollection1, class InputCollection2>
3690	–	void OSUAnalysis::setObjectFlags(cut &currentCut, uint currentCutIndex, flagMap &individualFlags, flagMap &cumulativeFlags, \
3691	–	InputCollection1 inputCollection1, InputCollection2 inputCollection2, vector<bool> flags1, vector<bool> flags2, string inputType){
4601
4602	+	template <class InputCollection1, class InputCollection2>
4603	+	void OSUAnalysis::setObjectFlags(cut &currentCut, uint currentCutIndex, flagMap &individualFlags, flagMap &cumulativeFlags,
4604	+	InputCollection1 inputCollection1, InputCollection2 inputCollection2, string inputType){
4605	+	// This function sets the flags for the paired object collection.
4606	+	// If the cut is applying on the given paired object collection, then the flags for the single object collections are also set.
4607	+	// If not, then the flags for the paired object collection are taken as the AND of the flags for each single object collection.
4608	+
4609	+	if (verbose_>2) clog << " Beginning setObjectFlags for cut=" << currentCut.name
4610	+	<< ", inputType=" << inputType
4611	+	<< endl;
4612
4613		bool sameObjects = false;
4614	<	if(typeid(InputCollection1).name() == typeid(InputCollection2).name()) sameObjects = true;
4614	>	if(typeid(InputCollection1).name() == typeid(InputCollection2).name()) sameObjects = true; // FIXME: is sameObjects just the not of isTwoTypesOfObject? If so, it's redundant.
4615
4616		// Get the strings for the two objects that make up the pair.
4617		string obj1Type, obj2Type;
#	Line 3704 \| Line 4623 \| void OSUAnalysis::setObjectFlags(cut &cu
4623		// Set them to true later, if any paired object passes (in which case both of its constituents should pass).
4624		if (currentCut.inputCollection == inputType) {
4625		for (uint object1 = 0; object1 != inputCollection1->size(); object1++) {
4626	<	individualFlags.at(obj1Type).at(currentCutIndex).push_back(false);
4627	<	cumulativeFlags.at(obj1Type).at(currentCutIndex).push_back(false);
4626	>	individualFlags.at(obj1Type).at(currentCutIndex).push_back(make_pair(false,false));
4627	>	cumulativeFlags.at(obj1Type).at(currentCutIndex).push_back(make_pair(false,false));
4628		}
4629		if (isTwoTypesOfObject) { // Only initialize the second object if it is different from the first.
4630		for (uint object2 = 0; object2 != inputCollection2->size(); object2++) {
4631	<	individualFlags.at(obj2Type).at(currentCutIndex).push_back(false);
4632	<	cumulativeFlags.at(obj2Type).at(currentCutIndex).push_back(false);
4631	>	individualFlags.at(obj2Type).at(currentCutIndex).push_back(make_pair(false,false));
4632	>	cumulativeFlags.at(obj2Type).at(currentCutIndex).push_back(make_pair(false,false));
4633		}
4634		}
4635		}
#	Line 3723 \| Line 4642 \| void OSUAnalysis::setObjectFlags(cut &cu
4642		if(sameObjects && object1 >= object2) continue;//account for duplicate pairs if both collections are the same
4643
4644
4645	<	bool decision = true;//object passes if this cut doesn't cut on that type of object
4645	>	bool cutDecision = true;//object passes if this cut doesn't cut on that type of object
4646	>	bool plotDecision = true;
4647
4648	+	// Determine whether each pair passes the cut, only if inputCollection is the same as the inputType.
4649		if(currentCut.inputCollection == inputType){
4650
4651		vector<bool> subcutDecisions;
4652		for( int subcutIndex = 0; subcutIndex != currentCut.numSubcuts; subcutIndex++){
4653		string stringValue = "";
4654		double value = valueLookup(&inputCollection1->at(object1), &inputCollection2->at(object2), currentCut.variables.at(subcutIndex), currentCut.functions.at(subcutIndex), stringValue);
4655	+	if (verbose_>1) clog << currentCut.variables.at(subcutIndex) << " = " << value
4656	+	<< endl;
4657		if (stringValue == "") subcutDecisions.push_back(evaluateComparison(value,currentCut.comparativeOperators.at(subcutIndex),currentCut.cutValues.at(subcutIndex)));
4658		else subcutDecisions.push_back(evaluateComparison(stringValue,currentCut.comparativeOperators.at(subcutIndex),currentCut.cutStringValues.at(subcutIndex)));
4659		}
4660
4661	<	if(currentCut.numSubcuts == 1) decision = subcutDecisions.at(0);
4661	>	if(currentCut.numSubcuts == 1) cutDecision = subcutDecisions.at(0);
4662		else{
4663		bool tempDecision = subcutDecisions.at(0);
4664		for( int subcutIndex = 1; subcutIndex < currentCut.numSubcuts; subcutIndex++){
#	Line 3744 \| Line 4667 \| void OSUAnalysis::setObjectFlags(cut &cu
4667		else if(currentCut.logicalOperators.at(subcutIndex-1) == "\|"\|\| currentCut.logicalOperators.at(subcutIndex-1) == "\|\|")
4668		tempDecision = tempDecision \|\| subcutDecisions.at(subcutIndex);
4669		}
4670	<	decision = tempDecision;
4670	>	cutDecision = tempDecision;
4671		}
4672	+	//invert the cut if this cut is a veto
4673	+	if (currentCut.isVeto) cutDecision = !cutDecision;
4674	+	plotDecision = cutDecision;
4675	+
4676	+	if (verbose_>1) clog << " cutDecision = " << cutDecision
4677	+	<< "; for currentCut.inputCollection = " << currentCut.inputCollection
4678	+	<< "; object1 (" << obj1Type << ") = " << object1
4679	+	<< "; object2 (" << obj2Type << ") = " << object2
4680	+	<< endl;
4681	+
4682	+	if (cutDecision) { // only set the flags for the individual objects if the pair object is being cut on
4683	+	individualFlags.at(obj1Type).at(currentCutIndex).at(object1).first = true;
4684	+	individualFlags.at(obj2Type).at(currentCutIndex).at(object2).first = true;
4685	+	}
4686	+	if (plotDecision) { // only set the flags for the individual objects if the pair object is being cut on
4687	+	individualFlags.at(obj1Type).at(currentCutIndex).at(object1).second = true;
4688	+	individualFlags.at(obj2Type).at(currentCutIndex).at(object2).second = true;
4689	+	}
4690	+
4691	+
4692	+	} // if(currentCut.inputCollection == inputType){
4693	+
4694	+	// The individualFlags will be true if the inputCollection is not the same as the inputType.
4695	+	// They are also independent of the previous flags on the single objects.
4696	+	individualFlags.at(inputType).at(currentCutIndex).push_back(make_pair(cutDecision,plotDecision));
4697	+
4698	+
4699	+
4700	+	// ************************************
4701	+	// Determine cumulative flags
4702	+	// ************************************
4703	+	// determine whether this paired object passes this cut AND all previous cuts
4704	+	bool previousCumulativeCutFlag = true;
4705	+	for(uint previousCutIndex = 0; previousCutIndex != currentCutIndex; previousCutIndex++){
4706	+	if(previousCumulativeCutFlag && individualFlags.at(inputType).at(previousCutIndex).at(counter).first) previousCumulativeCutFlag = true;
4707	+	else{ previousCumulativeCutFlag = false; break;}
4708		}
4709	<	// if (decision) isPassObj1.at(object1) = true;
3751	<	// if (decision) isPassObj2.at(object2) = true;
3752	<	individualFlags.at(inputType).at(currentCutIndex).push_back(decision);
3753	<	if (decision && currentCut.inputCollection == inputType) { // only set the flags for the individual objects if the pair object is being cut on
3754	<	individualFlags.at(obj1Type).at(currentCutIndex).at(object1) = true;
3755	<	individualFlags.at(obj2Type).at(currentCutIndex).at(object2) = true;
3756	<	}
4709	>	previousCumulativeCutFlag = previousCumulativeCutFlag && cutDecision;
4710
4711	<	//set flags for objects that pass each cut AND all the previous cuts
3759	<	bool previousCumulativeFlag = true;
4711	>	bool previousCumulativePlotFlag = true;
4712		for(uint previousCutIndex = 0; previousCutIndex != currentCutIndex; previousCutIndex++){
4713	<	if(previousCumulativeFlag && individualFlags.at(inputType).at(previousCutIndex).at(counter)) previousCumulativeFlag = true;
4714	<	else{ previousCumulativeFlag = false; break;}
4713	>	if(previousCumulativePlotFlag && individualFlags.at(inputType).at(previousCutIndex).at(counter).second) previousCumulativePlotFlag = true;
4714	>	else{ previousCumulativePlotFlag = false; break;}
4715		}
4716	<	//apply flags for the components of the composite object as well
4717	<	bool currentCumulativeFlag = true;
4718	<	if(flags1.size() == 0 && flags2.size() == 0) currentCumulativeFlag = previousCumulativeFlag && decision;
4719	<	else if(flags1.size() == 0) currentCumulativeFlag = previousCumulativeFlag && decision && flags2.at(object2);
4720	<	else if(flags2.size() == 0) currentCumulativeFlag = previousCumulativeFlag && decision && flags1.at(object1);
4721	<	else currentCumulativeFlag = previousCumulativeFlag && decision && flags1.at(object1) && flags2.at(object2);
4722	<	cumulativeFlags.at(inputType).at(currentCutIndex).push_back(currentCumulativeFlag);
4723	<	if (currentCumulativeFlag && currentCut.inputCollection == inputType) { // only set the flags for the individual objects if the pair object is being cut on
4724	<	cumulativeFlags.at(obj1Type).at(currentCutIndex).at(object1) = true && getPreviousCumulativeFlags(currentCutIndex, individualFlags, obj1Type, object1);
4725	<	cumulativeFlags.at(obj2Type).at(currentCutIndex).at(object2) = true && getPreviousCumulativeFlags(currentCutIndex, individualFlags, obj2Type, object2);
4716	>	previousCumulativePlotFlag = previousCumulativePlotFlag && plotDecision;
4717	>
4718	>	// Get the index for the flags of each of the single objects in the pair. Usually this is the index of the previous cut, i.e., currentCutIndex-1.
4719	>	int cutIdxFlagsObj1 = max(int(currentCutIndex-1),0);
4720	>	int cutIdxFlagsObj2 = max(int(currentCutIndex-1),0);
4721	>	// If the inputCollection of the cut is not equal to the inputType but the inputCollection includes objects that are contained in inputType, then use the currentCutIndex for those collections.
4722	>	// For example, if the inputType is jet-jet pairs, and the inputCollection is track-jet pairs, then use currentCutIndex for cutIdxFlagsObj{1,2}, i.e., for both jets.
4723	>	// For example, if the inputType is jets, and the inputCollection is track-jet pairs, then use currentCutIndex for cutIdxFlagsObj2 (jets) and currentCutIndex-1 for cutIdxFlagsObj1 (tracks).
4724	>	if (currentCut.inputCollection != inputType) {
4725	>	if (currentCut.inputCollection.find(obj1Type)!=string::npos) cutIdxFlagsObj1 = currentCutIndex;
4726	>	if (currentCut.inputCollection.find(obj2Type)!=string::npos) cutIdxFlagsObj2 = currentCutIndex;
4727	>	}
4728	>	flagPair flags1 = cumulativeFlags.at(obj1Type).at(cutIdxFlagsObj1); // flag for input collection 1
4729	>	flagPair flags2 = cumulativeFlags.at(obj2Type).at(cutIdxFlagsObj2); // flag for input collection 2
4730	>
4731	>	// The cumulative flag is only true if the paired object cumulative flag is true, and if the single object cumulative flags are true.
4732	>	bool currentCumulativeCutFlag = true;
4733	>	bool currentCumulativePlotFlag = true;
4734	>	if(flags1.size() == 0 && flags2.size() == 0) currentCumulativeCutFlag = previousCumulativeCutFlag;
4735	>	else if(flags1.size() == 0) currentCumulativeCutFlag = previousCumulativeCutFlag && flags2.at(object2).first;
4736	>	else if(flags2.size() == 0) currentCumulativeCutFlag = previousCumulativeCutFlag && flags1.at(object1).first;
4737	>	else currentCumulativeCutFlag = previousCumulativeCutFlag && flags1.at(object1).first && flags2.at(object2).first;
4738	>
4739	>	if(flags1.size() == 0 && flags2.size() == 0) currentCumulativePlotFlag = previousCumulativePlotFlag;
4740	>	else if(flags1.size() == 0) currentCumulativePlotFlag = previousCumulativePlotFlag && flags2.at(object2).second;
4741	>	else if(flags2.size() == 0) currentCumulativePlotFlag = previousCumulativePlotFlag && flags1.at(object1).second;
4742	>	else currentCumulativePlotFlag = previousCumulativePlotFlag && flags1.at(object1).first && flags2.at(object2).second;
4743	>
4744	>	cumulativeFlags.at(inputType).at(currentCutIndex).push_back(make_pair(currentCumulativeCutFlag,currentCumulativePlotFlag)); // Set the flag for the paired object
4745	>
4746	>
4747	>	if (currentCumulativeCutFlag && currentCut.inputCollection == inputType) { // Set the flags for the individual objects if the paired object is being cut on.
4748	>	cumulativeFlags.at(obj1Type).at(currentCutIndex).at(object1).first = true && getPreviousCumulativeFlags(currentCutIndex, individualFlags, obj1Type, object1, "cut");
4749	>	cumulativeFlags.at(obj2Type).at(currentCutIndex).at(object2).first = true && getPreviousCumulativeFlags(currentCutIndex, individualFlags, obj2Type, object2, "cut");
4750	>	cumulativeFlags.at(obj1Type).at(currentCutIndex).at(object1).second = true && getPreviousCumulativeFlags(currentCutIndex, individualFlags, obj1Type, object1, "plot");
4751	>	cumulativeFlags.at(obj2Type).at(currentCutIndex).at(object2).second = true && getPreviousCumulativeFlags(currentCutIndex, individualFlags, obj2Type, object2, "plot");
4752	>
4753	>	if (verbose_>1) clog << " previousCumulativeCutFlag for object1 = " << getPreviousCumulativeFlags(currentCutIndex, individualFlags, obj2Type, object1, "cut") << endl;
4754	>	if (verbose_>1) clog << " previousCumulativeCutFlag for object2 = " << getPreviousCumulativeFlags(currentCutIndex, individualFlags, obj2Type, object2, "cut") << endl;
4755	>
4756		}
4757	+
4758		counter++;
4759
4760		} // end for (uint object2 = 0; object2 != inputCollection2->size(); object2++)
4761		} // end for (uint object1 = 0; object1 != inputCollection1->size(); object1++)
4762
4763	<	}
4763	>	} // end void OSUAnalysis::setObjectFlags
4764
4765
4766	<	bool OSUAnalysis::getPreviousCumulativeFlags(uint currentCutIndex, flagMap &individualFlags, string obj1Type, uint object1) {
4766	>	bool OSUAnalysis::getPreviousCumulativeFlags(uint currentCutIndex, flagMap &individualFlags, string obj1Type, uint object1, string flagType) {
4767		// Return true iff for the collection obj1Type, the element with index object1 has individal flags set to true for
4768		// all cuts up to currentCutIndex
4769		bool previousCumulativeFlag = true;
4770		for (uint previousCutIndex = 0; previousCutIndex < currentCutIndex; previousCutIndex++) {
4771	<	if (previousCumulativeFlag && individualFlags.at(obj1Type).at(previousCutIndex).at(object1)) previousCumulativeFlag = true;
4771	>	bool tempFlag = false;
4772	>	if(flagType == "cut") tempFlag = individualFlags.at(obj1Type).at(previousCutIndex).at(object1).first;
4773	>	else if(flagType == "plot") tempFlag = individualFlags.at(obj1Type).at(previousCutIndex).at(object1).second;
4774	>
4775	>	if (previousCumulativeFlag && tempFlag) previousCumulativeFlag = true;
4776		else {
4777		previousCumulativeFlag = false; break;
4778		}
#	Line 3795 \| Line 4782 \| bool OSUAnalysis::getPreviousCumulativeF
4782
4783
4784
4785	+
4786		template <class InputCollection>
4787	<	void OSUAnalysis::assignTreeBranch(BranchSpecs parameters, InputCollection inputCollection, vector<bool> flags){
4788	<	// This function is similar to fill1DHistogram(), but instead of filling a histogram it assigns a value to a variable for the BNTree
4787	>	void OSUAnalysis::assignTreeBranch(BranchSpecs parameters, InputCollection inputCollection, flagPair flags){
4788	>	// This function is similar to fill1DHistogram(), but instead of filling a histogram it assigns a value to a variable for the BNTree
4789
4790	<	if (BNTreeBranchVals_.count(parameters.name)==0) cout << "Error[assignTreeBranch]: trying to assign value to " << parameters.name << " that does not have a branch set up. Will likely seg fault." << endl;
4791	<	for (uint object = 0; object != inputCollection->size(); object++) {
4790	>	if (BNTreeBranchVals_.count(parameters.name)==0) clog << "Error[assignTreeBranch]: trying to assign value to " << parameters.name << " that does not have a branch set up. Will likely seg fault." << endl;
4791	>	for (uint object = 0; object != inputCollection->size(); object++) {
4792
4793	<	if (!plotAllObjectsInPassingEvents_ && !flags.at(object)) continue;
4793	>	if (!plotAllObjectsInPassingEvents_ && !flags.at(object).second) continue;
4794
4795	<	string inputVariable = parameters.inputVariable;
4795	>	string inputVariable = parameters.inputVariable;
4796		string function = "";
4797	<	string stringValue = "";
4798	<	double value = valueLookup(&inputCollection->at(object), inputVariable, function, stringValue);
4799	<	BNTreeBranchVals_.at(parameters.name).push_back(value);
4797	>	string stringValue = "";
4798	>	double value = valueLookup(&inputCollection->at(object), inputVariable, function, stringValue);
4799	>	BNTreeBranchVals_.at(parameters.name).push_back(value);
4800
4801		}
4802		}
4803
4804
4805		template <class InputCollection>
4806	<	void OSUAnalysis::fill1DHistogram(TH1* histo, histogram parameters, InputCollection inputCollection,vector<bool> flags, double scaleFactor){
4806	>	void OSUAnalysis::fill1DHistogram(TH1* histo, histogram parameters, InputCollection inputCollection, flagPair flags, double scaleFactor){
4807	>
4808	>	if (verbose_>2) clog << " Filling histogram for " << parameters.name << endl;
4809
4810		for (uint object = 0; object != inputCollection->size(); object++){
4811
4812	<	if(!plotAllObjectsInPassingEvents_ && !flags.at(object)) continue;
4812	>	if(!plotAllObjectsInPassingEvents_ && !flags.at(object).second) continue;
4813
4814		string currentString = parameters.inputVariables.at(0);
4815		string inputVariable = "";
#	Line 3831 \| Line 4821 \| *void OSUAnalysis::fill1DHistogram(TH1 h**
4821		function = currentString.substr(0,currentString.find("("));//function comes before the "("
4822		inputVariable = currentString.substr(currentString.find("(")+1);//get rest of string
4823		inputVariable = inputVariable.substr(0,inputVariable.size()-1);//remove trailing ")"
4824	<	}
4824	>	}
4825
4826	<	string stringValue = "";
4827	<	double value = valueLookup(&inputCollection->at(object), inputVariable, function, stringValue);
4828	<	histo->Fill(value,scaleFactor);
4826	>	string stringValue = "";
4827	>	double value = valueLookup(&inputCollection->at(object), inputVariable, function, stringValue);
4828	>	histo->Fill(value,scaleFactor);
4829
4830		if (printEventInfo_) {
4831		// Write information about event to screen, for testing purposes.
4832	<	cout << " Info for event: value for histogram " << histo->GetName() << ": " << value << endl;
4832	>	clog << " Info for event: value for histogram " << histo->GetName() << ": " << value << " (object number " << object << ")" << endl;
4833		}
4834
4835		}
4836		}
4837
4838		template <class InputCollection1, class InputCollection2>
4839	<	void OSUAnalysis::fill1DHistogram(TH1* histo, histogram parameters, InputCollection1 inputCollection1, InputCollection2 inputCollection2, vector<bool> flags1, vector<bool> flags2, vector<bool> pairFlags, double scaleFactor){
4839	>	void OSUAnalysis::fill1DHistogram(TH1* histo, histogram parameters, InputCollection1 inputCollection1, InputCollection2 inputCollection2,
4840	>	flagPair pairFlags, double scaleFactor){
4841
4842		bool sameObjects = false;
4843		if(typeid(InputCollection1).name() == typeid(InputCollection2).name()) sameObjects = true;
#	Line 3858 \| Line 4849 \| *void OSUAnalysis::fill1DHistogram(TH1 h**
4849		if(sameObjects && object1 >= object2) continue;//account for duplicate pairs if both collections are the same
4850
4851		pairCounter++;
4852	<	//only take objects which have passed all cuts and pairs which have passed all cuts
3862	<	if(!plotAllObjectsInPassingEvents_ && !flags1.at(object1)) continue;
3863	<	if(!plotAllObjectsInPassingEvents_ && !flags2.at(object2)) continue;
3864	<	if(!plotAllObjectsInPassingEvents_ && !pairFlags.at(pairCounter)) continue;
4852	>	if(!plotAllObjectsInPassingEvents_ && !pairFlags.at(pairCounter).second) continue;
4853
4854		string currentString = parameters.inputVariables.at(0);
4855		string inputVariable = "";
#	Line 3879 \| Line 4867 \| *void OSUAnalysis::fill1DHistogram(TH1 h**
4867		double value = valueLookup(&inputCollection1->at(object1), &inputCollection2->at(object2), inputVariable, function, stringValue);
4868		histo->Fill(value,scaleFactor);
4869
4870	+	if (printEventInfo_) {
4871	+	// Write information about event to screen, for testing purposes.
4872	+	clog << " Info for event: value for histogram " << histo->GetName() << ": " << value
4873	+	<< " (object1 number " << object1 << "), "
4874	+	<< " (object2 number " << object2 << ")"
4875	+	<< endl;
4876	+	}
4877	+
4878		}
4879		}
4880
#	Line 3886 \| Line 4882 \| *void OSUAnalysis::fill1DHistogram(TH1 h**
4882
4883
4884		template <class InputCollection>
4885	<	void OSUAnalysis::fill2DHistogram(TH2* histo, histogram parameters, InputCollection inputCollection,vector<bool> flags, double scaleFactor){
4885	>	void OSUAnalysis::fill2DHistogram(TH2* histo, histogram parameters, InputCollection inputCollection, flagPair flags, double scaleFactor){
4886
4887		for (uint object = 0; object != inputCollection->size(); object++){
4888
4889	<	if(!plotAllObjectsInPassingEvents_ && !flags.at(object)) continue;
4889	>	if(!plotAllObjectsInPassingEvents_ && !flags.at(object).second) continue;
4890
4891		string stringValue = "";
4892		string currentString = parameters.inputVariables.at(0);
#	Line 3927 \| Line 4923 \| *void OSUAnalysis::fill2DHistogram(TH2 h**
4923		}
4924
4925		template <class InputCollection1, class InputCollection2>
4926	<	void OSUAnalysis::fill2DHistogram(TH2* histo, histogram parameters, InputCollection1 inputCollection1, InputCollection2 inputCollection2, vector<bool> flags1, vector<bool> flags2, vector<bool> pairFlags, double scaleFactor){
4926	>	void OSUAnalysis::fill2DHistogram(TH2* histo, histogram parameters, InputCollection1 inputCollection1, InputCollection2 inputCollection2,
4927	>	flagPair pairFlags, double scaleFactor){
4928
4929		bool sameObjects = false;
4930		if(typeid(InputCollection1).name() == typeid(InputCollection2).name()) sameObjects = true;
#	Line 3940 \| Line 4937 \| *void OSUAnalysis::fill2DHistogram(TH2 h**
4937
4938		pairCounter++;
4939
4940	<	//only take objects which have passed all cuts and pairs which have passed all cuts
3944	<	if(!plotAllObjectsInPassingEvents_ && !flags1.at(object1)) continue;
3945	<	if(!plotAllObjectsInPassingEvents_ && !flags2.at(object2)) continue;
3946	<	if(!plotAllObjectsInPassingEvents_ && !pairFlags.at(pairCounter)) continue;
4940	>	if(!plotAllObjectsInPassingEvents_ && !pairFlags.at(pairCounter).second) continue;
4941
4942		string stringValue = "";
4943		string currentString = parameters.inputVariables.at(0);
#	Line 3991 \| Line 4985 \| int OSUAnalysis::getGenMatchedParticleIn
4985
4986		double currentDeltaR = deltaR(object->eta,object->phi,mcparticle->eta,mcparticle->phi);
4987		if(currentDeltaR > 0.05) continue;
4988	<	// cout << setprecision(3) << setw(20)
4988	>	// clog << setprecision(3) << setw(20)
4989		// << "\tcurrentParticle: eta = " << mcparticles->at(mcparticle - mcparticles->begin()).eta
4990		// << setw(20)
4991		// << "\tphi = " << mcparticles->at(mcparticle - mcparticles->begin()).phi
#	Line 4010 \| Line 5004 \| int OSUAnalysis::getGenMatchedParticleIn
5004		}
5005
5006		}
5007	<	// if(bestMatchDeltaR != 999) cout << "bestMatch: deltaR = " << bestMatchDeltaR << " id = " << mcparticles->at(bestMatchIndex).id << " motherId = " << mcparticles->at(bestMatchIndex).motherId << endl;
5008	<	// else cout << "no match found..." << endl;
5007	>	// if(bestMatchDeltaR != 999) clog << "bestMatch: deltaR = " << bestMatchDeltaR << " id = " << mcparticles->at(bestMatchIndex).id << " motherId = " << mcparticles->at(bestMatchIndex).motherId << endl;
5008	>	// else clog << "no match found..." << endl;
5009		return bestMatchIndex;
5010
5011		}
#	Line 4103 \| Line 5097 \| OSUAnalysis::chosenVertex ()
5097		{
5098		const BNprimaryvertex *chosenVertex = 0;
5099		if(cumulativeFlags.find ("primaryvertexs") != cumulativeFlags.end ()){
5100	<	vector<bool> vertexFlags;
5100	>	flagPair vertexFlags;
5101		for (int i = cumulativeFlags.at("primaryvertexs").size() - 1; i >= 0; i--){
5102		if (cumulativeFlags.at("primaryvertexs").at(i).size()){
5103		vertexFlags = cumulativeFlags.at("primaryvertexs").at(i);
#	Line 4111 \| Line 5105 \| OSUAnalysis::chosenVertex ()
5105		}
5106		}
5107		for (uint vertexIndex = 0; vertexIndex != vertexFlags.size(); vertexIndex++){
5108	<	if(!vertexFlags.at(vertexIndex)) continue;
5108	>	if(!vertexFlags.at(vertexIndex).first) continue;
5109		chosenVertex = & primaryvertexs->at(vertexIndex);
5110		break;
5111		}
#	Line 4127 \| Line 5121 \| OSUAnalysis::chosenMET ()
5121		{
5122		const BNmet *chosenMET = 0;
5123		if(cumulativeFlags.find ("mets") != cumulativeFlags.end ()){
5124	<	vector<bool> metFlags;
5124	>	flagPair metFlags;
5125		for (int i = cumulativeFlags.at("mets").size() - 1; i >= 0; i--){
5126		if (cumulativeFlags.at("mets").at(i).size()){
5127		metFlags = cumulativeFlags.at("mets").at(i);
#	Line 4135 \| Line 5129 \| OSUAnalysis::chosenMET ()
5129		}
5130		}
5131		for (uint metIndex = 0; metIndex != metFlags.size(); metIndex++){
5132	<	if(!metFlags.at(metIndex)) continue;
5132	>	if(!metFlags.at(metIndex).first) continue;
5133		chosenMET = & mets->at(metIndex);
5134		break;
5135		}
#	Line 4151 \| Line 5145 \| OSUAnalysis::chosenElectron ()
5145		{
5146		const BNelectron *chosenElectron = 0;
5147		if(cumulativeFlags.find ("electrons") != cumulativeFlags.end ()){
5148	<	vector<bool> electronFlags;
5148	>	flagPair electronFlags;
5149		for (int i = cumulativeFlags.at("electrons").size() - 1; i >= 0; i--){
5150		if (cumulativeFlags.at("electrons").at(i).size()){
5151		electronFlags = cumulativeFlags.at("electrons").at(i);
#	Line 4159 \| Line 5153 \| OSUAnalysis::chosenElectron ()
5153		}
5154		}
5155		for (uint electronIndex = 0; electronIndex != electronFlags.size(); electronIndex++){
5156	<	if(!electronFlags.at(electronIndex)) continue;
5156	>	if(!electronFlags.at(electronIndex).first) continue;
5157		chosenElectron = & electrons->at(electronIndex);
5158		break;
5159		}
#	Line 4170 \| Line 5164 \| OSUAnalysis::chosenElectron ()
5164		return chosenElectron;
5165		}
5166
5167	+
5168		const BNmuon *
5169		OSUAnalysis::chosenMuon ()
5170		{
5171		const BNmuon *chosenMuon = 0;
5172		if(cumulativeFlags.find ("muons") != cumulativeFlags.end ()){
5173	<	vector<bool> muonFlags;
5173	>	flagPair muonFlags;
5174		for (int i = cumulativeFlags.at("muons").size() - 1; i >= 0; i--){
5175		if (cumulativeFlags.at("muons").at(i).size()){
5176		muonFlags = cumulativeFlags.at("muons").at(i);
#	Line 4183 \| Line 5178 \| OSUAnalysis::chosenMuon ()
5178		}
5179		}
5180		for (uint muonIndex = 0; muonIndex != muonFlags.size(); muonIndex++){
5181	<	if(!muonFlags.at(muonIndex)) continue;
5181	>	if(!muonFlags.at(muonIndex).first) continue;
5182		chosenMuon = & muons->at(muonIndex);
5183		break;
5184		}
#	Line 4194 \| Line 5189 \| OSUAnalysis::chosenMuon ()
5189		return chosenMuon;
5190		}
5191
5192	+	double
5193	+	OSUAnalysis::chosenHT ()
5194	+	{
5195	+	double chosenHT = 0.0;
5196	+	if(cumulativeFlags.find ("jets") != cumulativeFlags.end ()){
5197	+	flagPair jetFlags;
5198	+	for (int i = cumulativeFlags.at("jets").size() - 1; i >= 0; i--){
5199	+	if (cumulativeFlags.at("jets").at(i).size()){
5200	+	jetFlags = cumulativeFlags.at("jets").at(i);
5201	+	break;
5202	+	}
5203	+	}
5204	+	for (uint jetIndex = 0; jetIndex != jetFlags.size(); jetIndex++){
5205	+	if(!jetFlags.at(jetIndex).first) continue;
5206	+	chosenHT += jets->at(jetIndex).pt;
5207	+	}
5208	+	}
5209	+
5210	+	return chosenHT;
5211	+	}
5212	+
5213	+	pair<const BNmuon , const BNmuon >
5214	+	OSUAnalysis::leadMuonPair ()
5215	+	{
5216	+	pair<const BNmuon , const BNmuon > leadMuonPair;
5217	+	leadMuonPair.first = leadMuonPair.second = 0;
5218	+
5219	+	if(cumulativeFlags.find ("muons") != cumulativeFlags.end ()){
5220	+	flagPair muonFlags;
5221	+	for (int i = cumulativeFlags.at("muons").size() - 1; i >= 0; i--){
5222	+	if (cumulativeFlags.at("muons").at(i).size()){
5223	+	muonFlags = cumulativeFlags.at("muons").at(i);
5224	+	break;
5225	+	}
5226	+	}
5227	+	for (uint muonIndex0 = 0; muonIndex0 != muonFlags.size(); muonIndex0++){
5228	+	if(!muonFlags.at(muonIndex0).first) continue;
5229	+	for (uint muonIndex1 = muonIndex0 + 1; muonIndex1 < muonFlags.size(); muonIndex1++){
5230	+	if(!muonFlags.at(muonIndex1).first) continue;
5231	+	const BNmuon *mu0 = & muons->at(muonIndex0);
5232	+	const BNmuon *mu1 = & muons->at(muonIndex1);
5233	+	if(leadMuonPair.first == 0 \|\| leadMuonPair.second == 0){
5234	+	leadMuonPair.first = mu0;
5235	+	leadMuonPair.second = mu1;
5236	+	}
5237	+	else{
5238	+	TVector2 newPt0 (mu0->px, mu0->py),
5239	+	newPt1 (mu1->px, mu1->py),
5240	+	oldPt0 (leadMuonPair.first->px, leadMuonPair.first->py),
5241	+	oldPt1 (leadMuonPair.second->px, leadMuonPair.second->py);
5242	+	if(newPt0.Mod () + newPt1.Mod () > oldPt0.Mod() + oldPt1.Mod ())
5243	+	{
5244	+	leadMuonPair.first = mu0;
5245	+	leadMuonPair.second = mu1;
5246	+	}
5247	+	}
5248	+	}
5249	+	}
5250	+	}
5251	+
5252	+	return leadMuonPair;
5253	+	}
5254	+
5255	+	pair<const BNelectron , const BNelectron >
5256	+	OSUAnalysis::leadElectronPair ()
5257	+	{
5258	+	pair<const BNelectron , const BNelectron > leadElectronPair;
5259	+	leadElectronPair.first = leadElectronPair.second = 0;
5260	+	if(cumulativeFlags.find ("electrons") != cumulativeFlags.end ()){
5261	+	flagPair electronFlags;
5262	+	for (int i = cumulativeFlags.at("electrons").size() - 1; i >= 0; i--){
5263	+	if (cumulativeFlags.at("electrons").at(i).size()){
5264	+	electronFlags = cumulativeFlags.at("electrons").at(i);
5265	+	break;
5266	+	}
5267	+	}
5268	+	for (uint electronIndex0 = 0; electronIndex0 != electronFlags.size(); electronIndex0++){
5269	+	if(!electronFlags.at(electronIndex0).first) continue;
5270	+	for (uint electronIndex1 = electronIndex0 + 1; electronIndex1 < electronFlags.size(); electronIndex1++){
5271	+	if(!electronFlags.at(electronIndex1).first) continue;
5272	+	const BNelectron *el0 = & electrons->at(electronIndex0);
5273	+	const BNelectron *el1 = & electrons->at(electronIndex1);
5274	+	if(leadElectronPair.first == 0 \|\| leadElectronPair.second == 0){
5275	+	leadElectronPair.first = el0;
5276	+	leadElectronPair.second = el1;
5277	+	}
5278	+	else{
5279	+	TVector2 newPt0 (el0->px, el0->py),
5280	+	newPt1 (el1->px, el1->py),
5281	+	oldPt0 (leadElectronPair.first->px, leadElectronPair.first->py),
5282	+	oldPt1 (leadElectronPair.second->px, leadElectronPair.second->py);
5283	+	if(newPt0.Mod () + newPt1.Mod () > oldPt0.Mod() + oldPt1.Mod ())
5284	+	{
5285	+	leadElectronPair.first = el0;
5286	+	leadElectronPair.second = el1;
5287	+	}
5288	+	}
5289	+	}
5290	+	}
5291	+	}
5292	+
5293	+	return leadElectronPair;
5294	+	}
5295	+
5296		DEFINE_FWK_MODULE(OSUAnalysis);

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Comparing UserCode/OSUT3Analysis/AnaTools/plugins/OSUAnalysis.cc (file contents): Revision 1.80 by wulsin, Tue Jun 4 14:18:10 2013 UTC vs. Revision 1.118 by wulsin, Mon Aug 5 22:00:12 2013 UTC

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Comparing UserCode/OSUT3Analysis/AnaTools/plugins/OSUAnalysis.cc (file contents):
Revision 1.80 by wulsin, Tue Jun 4 14:18:10 2013 UTC vs.
Revision 1.118 by wulsin, Mon Aug 5 22:00:12 2013 UTC