[ViewVC] Diff of: cvsroot/UserCode/OSUT3Analysis/AnaTools/plugins/OSUAnalysis.cc

Comparing UserCode/OSUT3Analysis/AnaTools/plugins/OSUAnalysis.cc (file contents):
Revision 1.76 by wulsin, Fri May 31 09:42:10 2013 UTC vs.
Revision 1.122 by jbrinson, Fri Aug 9 11:12:33 2013 UTC

#	Line 1 \| Line 1
1		#include "OSUT3Analysis/AnaTools/plugins/OSUAnalysis.h"
2	–
2		OSUAnalysis::OSUAnalysis (const edm::ParameterSet &cfg) :
3		// Retrieve parameters from the configuration file.
4		jets_ (cfg.getParameter<edm::InputTag> ("jets")),
5		muons_ (cfg.getParameter<edm::InputTag> ("muons")),
6	+	secMuons_ (cfg.getParameter<edm::InputTag> ("secMuons")),
7		electrons_ (cfg.getParameter<edm::InputTag> ("electrons")),
8		events_ (cfg.getParameter<edm::InputTag> ("events")),
9		taus_ (cfg.getParameter<edm::InputTag> ("taus")),
#	Line 28 \| Line 28 \| OSUAnalysis::OSUAnalysis (const edm::Par
28		datasetType_ (cfg.getParameter<string> ("datasetType")),
29		channels_ (cfg.getParameter<vector<edm::ParameterSet> >("channels")),
30		histogramSets_ (cfg.getParameter<vector<edm::ParameterSet> >("histogramSets")),
31	+	useEDMFormat_ (cfg.getParameter<bool>("useEDMFormat")),
32		treeBranchSets_ (cfg.getParameter<vector<edm::ParameterSet> >("treeBranchSets")),
33		plotAllObjectsInPassingEvents_ (cfg.getParameter<bool> ("plotAllObjectsInPassingEvents")),
34		doPileupReweighting_ (cfg.getParameter<bool> ("doPileupReweighting")),
35		applyLeptonSF_ (cfg.getParameter<bool> ("applyLeptonSF")),
36	<	printEventInfo_ (cfg.getParameter<bool> ("printEventInfo")),
36	>	applyBtagSF_ (cfg.getParameter<bool> ("applyBtagSF")),
37	>	minBtag_ (cfg.getParameter<int> ("minBtag")),
38	>	printEventInfo_ (cfg.getParameter<bool> ("printEventInfo")),
39	>	printAllTriggers_ (cfg.getParameter<bool> ("printAllTriggers")),
40		useTrackCaloRhoCorr_ (cfg.getParameter<bool> ("useTrackCaloRhoCorr")),
41		stopCTau_ (cfg.getParameter<vector<double> > ("stopCTau")),
42	<	GetPlotsAfterEachCut_ (cfg.getParameter<bool> ("GetPlotsAfterEachCut"))
43	<	{
42	>	GetPlotsAfterEachCut_ (cfg.getParameter<bool> ("GetPlotsAfterEachCut")),
43	>	verbose_ (cfg.getParameter<int> ("verbose"))
44	>	{
45
46	<	TH1::SetDefaultSumw2 ();
46	>	if (verbose_) printEventInfo_ = true;
47	>	if (verbose_) clog << "Beginning OSUAnalysis::OSUAnalysis constructor." << endl;
48	>
49	>	TH1::SetDefaultSumw2();
50
51		//create pile-up reweighting object, if necessary
52		if(datasetType_ != "data") {
#	Line 47 \| Line 55 \| OSUAnalysis::OSUAnalysis (const edm::Par
55		muonSFWeight_ = new MuonSFWeight (muonSFFile_, muonSF_);
56		electronSFWeight_ = new ElectronSFWeight ("53X", electronSFID_);
57		}
58	+	if (applyBtagSF_){
59	+	bTagSFWeight_ = new BtagSFWeight;
60	+	}
61		}
62		if (datasetType_ == "signalMC" && regex_match (dataset_, regex ("stop.to._.mm.")))
63	<	stopCTauWeight_ = new StopCTauWeight (stopCTau_.at (0), stopCTau_.at (1), stops_);
63	>	stopCTauWeight_ = new StopCTauWeight (stopCTau_.at(0), stopCTau_.at(1), stops_);
64
65
66		// Construct Cutflow Objects. These store the results of cut decisions and
#	Line 59 \| Line 70 \| OSUAnalysis::OSUAnalysis (const edm::Par
70		//always get vertex collection so we can assign the primary vertex in the event
71		objectsToGet.push_back("primaryvertexs");
72		objectsToPlot.push_back("primaryvertexs");
73	<	objectsToCut.push_back("primaryvertexs");
73	>	objectsToFlag.push_back("primaryvertexs");
74
75
76		//always get the MC particles to do GEN-matching
#	Line 69 \| Line 80 \| OSUAnalysis::OSUAnalysis (const edm::Par
80		objectsToGet.push_back("events");
81
82
83	<	// Parse the tree variable definitions.
84	<	for (uint iBranchSet = 0; iBranchSet<treeBranchSets_.size(); iBranchSet++) {
83	>	// Parse the tree variable definitions.
84	>	for (uint iBranchSet = 0; !useEDMFormat_ && iBranchSet<treeBranchSets_.size(); iBranchSet++) {
85		string tempInputCollection = treeBranchSets_.at(iBranchSet).getParameter<string> ("inputCollection");
86	<	if(tempInputCollection.find("pairs")!=string::npos) { cout << "Warning: tree filling is not configured for pairs of objects, so will not work for collection: " << tempInputCollection << endl; }
86	>	if(tempInputCollection.find("pairs")!=string::npos) { clog << "Warning: tree filling is not configured for pairs of objects, so will not work for collection: " << tempInputCollection << endl; }
87		objectsToGet.push_back(tempInputCollection);
88	<	objectsToCut.push_back(tempInputCollection);
88	>	objectsToFlag.push_back(tempInputCollection);
89
90		vector<string> branchList(treeBranchSets_.at(iBranchSet).getParameter<vector<string> >("branches"));
91
92		for (uint iBranch = 0; iBranch<branchList.size(); iBranch++) {
93		BranchSpecs br;
94		br.inputCollection = tempInputCollection;
95	<	br.inputVariable = branchList.at(iBranch);
96	<	TString newName = TString(br.inputCollection) + "_" + TString(br.inputVariable);
97	<	br.name = string(newName.Data());
95	>	br.inputVariable = branchList.at(iBranch);
96	>	TString newName = TString(br.inputCollection) + "_" + TString(br.inputVariable);
97	>	br.name = string(newName.Data());
98		treeBranches_.push_back(br);
99	<	}
99	>	if (verbose_>3) clog << " Adding branch to BNTree: " << br.name << endl;
100	>	}
101
102	<	} // end for (uint iBranchSet = 0; iBranchSet<treeBranchSets_.size(); iBranchSet++) {
102	>	} // end for (uint iBranchSet = 0; iBranchSet<treeBranchSets_.size(); iBranchSet++)
103
104
105		//parse the histogram definitions
#	Line 95 \| Line 107 \| OSUAnalysis::OSUAnalysis (const edm::Par
107
108		string tempInputCollection = histogramSets_.at(currentHistogramSet).getParameter<string> ("inputCollection");
109		if(tempInputCollection == "muon-electron pairs") tempInputCollection = "electron-muon pairs";
110	+	if(tempInputCollection == "photon-muon pairs") tempInputCollection = "muon-photon pairs";
111	+	if(tempInputCollection == "photon-electron pairs") tempInputCollection = "electron-photon pairs";
112		if(tempInputCollection == "jet-electron pairs") tempInputCollection = "electron-jet pairs";
113	+	if(tempInputCollection == "jet-photon pairs") tempInputCollection = "photon-jet pairs";
114		if(tempInputCollection == "jet-muon pairs") tempInputCollection = "muon-jet pairs";
115	+	if(tempInputCollection == "event-muon pairs") tempInputCollection = "muon-event pairs";
116	+	if(tempInputCollection == "jet-met pairs") tempInputCollection = "met-jet pairs";
117	+	if(tempInputCollection == "track-jet pairs") tempInputCollection = "track-jet pairs";
118		if(tempInputCollection == "event-track pairs") tempInputCollection = "track-event pairs";
119		if(tempInputCollection == "secondary muon-muon pairs") tempInputCollection = "muon-secondary muon pairs";
120	+	if(tempInputCollection == "secondary jet-muon pairs") tempInputCollection = "muon-secondary jet pairs";
121	+	if(tempInputCollection == "secondary photon-muon pairs") tempInputCollection = "muon-secondary photon pairs";
122	+	if(tempInputCollection == "secondary jet-electron pairs") tempInputCollection = "electron-secondary jet pairs";
123	+	if(tempInputCollection == "secondary jet-photon pairs") tempInputCollection = "photon-secondary jet pairs";
124	+	if(tempInputCollection == "secondary jet-jet pairs") tempInputCollection = "jet-secondary jet pairs";
125		if(tempInputCollection == "secondary electron-electron pairs") tempInputCollection = "electron-secondary electron pairs";
126		if(tempInputCollection == "trigobj-electron pairs") tempInputCollection = "electron-trigobj pairs";
127		if(tempInputCollection == "trigobj-muon pairs") tempInputCollection = "muon-trigobj pairs";
128		if(tempInputCollection.find("pairs")==string::npos){ //just a single object
129		if(tempInputCollection.find("secondary")!=string::npos){//secondary object
130	<	int spaceIndex = tempInputCollection.find(" ");
131	<	int secondWordLength = tempInputCollection.size() - spaceIndex;
132	<	objectsToGet.push_back(tempInputCollection.substr(spaceIndex+1,secondWordLength));
133	<	}
134	<	else{
130	>	if(tempInputCollection.find("secondary muons")!=string::npos){//treat secondary muons differently; allow for a different input collection
131	>	objectsToGet.push_back("secondary muons");
132	>	} else {
133	>	int spaceIndex = tempInputCollection.find(" ");
134	>	int secondWordLength = tempInputCollection.size() - spaceIndex;
135	>	objectsToGet.push_back(tempInputCollection.substr(spaceIndex+1,secondWordLength));
136	>	}
137	>	} else{
138		objectsToGet.push_back(tempInputCollection);
139		}
140		objectsToPlot.push_back(tempInputCollection);
141	<	objectsToCut.push_back(tempInputCollection);
141	>	objectsToFlag.push_back(tempInputCollection);
142		} else { //pair of objects, need to add the pair and the individual objects to the lists of things to Get/Plot/Cut
143		string obj1;
144		string obj2;
145		getTwoObjs(tempInputCollection, obj1, obj2);
146		string obj2ToGet = getObjToGet(obj2);
147	<	objectsToCut.push_back(tempInputCollection);
148	<	objectsToCut.push_back(obj1);
149	<	objectsToCut.push_back(obj2);
147	>	objectsToFlag.push_back(tempInputCollection);
148	>	objectsToFlag.push_back(obj1);
149	>	objectsToFlag.push_back(obj2);
150		objectsToPlot.push_back(tempInputCollection);
151		objectsToPlot.push_back(obj1);
152		objectsToPlot.push_back(obj2);
153		objectsToGet.push_back(tempInputCollection);
154		objectsToGet.push_back(obj1);
155		objectsToGet.push_back(obj2ToGet);
156	<	} // end else
157	<
158	<
159	<
156	>	} // end else
157	>	if (find(objectsToPlot.begin(), objectsToPlot.end(), "events") != objectsToPlot.end())
158	>	objectsToGet.push_back("jets");
159	>
160	>
161		vector<edm::ParameterSet> histogramList_ (histogramSets_.at(currentHistogramSet).getParameter<vector<edm::ParameterSet> >("histograms"));
162
163		for(uint currentHistogram = 0; currentHistogram != histogramList_.size(); currentHistogram++){
#	Line 147 \| Line 174 \| OSUAnalysis::OSUAnalysis (const edm::Par
174		tempHistogram.variableBinsY = histogramList_.at(currentHistogram).getUntrackedParameter<vector<double> >("variableBinsY", defaultValue);
175		tempHistogram.inputVariables = histogramList_.at(currentHistogram).getParameter<vector<string> >("inputVariables");
176
177	<	histograms.push_back(tempHistogram);
177	>	bool histExists = false;
178	>	for (uint i=0; i<histograms.size(); i++) {
179	>	if (histograms.at(i).name == tempHistogram.name) { histExists = true; break; }
180	>	}
181	>	if (histExists) {
182	>	clog << "Warning: histogram " << tempHistogram.name << " already exists; will not book an additional instance." << endl;
183	>	} else {
184	>	histograms.push_back(tempHistogram);
185	>	}
186
187		}
188	<	} // for(uint currentHistogramSet = 0; currentHistogramSet != histogramSets_.size(); currentHistogramSet++){
188	>	} // for(uint currentHistogramSet = 0; currentHistogramSet != histogramSets_.size(); currentHistogramSet++)
189
190		//make unique vector of objects we need to plot (so we can book a histogram with the number of each object)
191		sort( objectsToPlot.begin(), objectsToPlot.end() );
#	Line 162 \| Line 197 \| OSUAnalysis::OSUAnalysis (const edm::Par
197		for(uint currentObjectIndex = 0; currentObjectIndex != objectsToPlot.size(); currentObjectIndex++){
198
199		string currentObject = objectsToPlot.at(currentObjectIndex);
200	<	if(currentObject != "muons" && currentObject != "secondary muons" && currentObject != "secondary electrons" && currentObject != "electrons" && currentObject != "taus" && currentObject != "tracks" && currentObject != "photons" && currentObject != "superclusters") continue;
200	>	if(currentObject != "muons" &&
201	>	currentObject != "secondary muons" &&
202	>	currentObject != "secondary electrons" &&
203	>	currentObject != "electrons" &&
204	>	currentObject != "taus" &&
205	>	currentObject != "tracks" &&
206	>	currentObject != "photons" &&
207	>	currentObject != "secondary photons"&&
208	>	currentObject != "superclusters")
209	>	continue;
210
211		histogram tempIdHisto;
212		histogram tempMomIdHisto;
#	Line 177 \| Line 221 \| OSUAnalysis::OSUAnalysis (const edm::Par
221		tempIdVsGmaIdHisto.inputCollection = currentObject;
222
223		if(currentObject == "secondary muons") currentObject = "secondaryMuons";
224	+	if(currentObject == "secondary photons") currentObject = "secondaryPhotons";
225		if(currentObject == "secondary electrons") currentObject = "secondaryElectrons";
226
227		currentObject = currentObject.substr(0, currentObject.size()-1);
#	Line 232 \| Line 277 \| OSUAnalysis::OSUAnalysis (const edm::Par
277		string channelName (channels_.at(currentChannel).getParameter<string>("name"));
278		tempChannel.name = channelName;
279		TString channelLabel = channelName;
280	+	if (verbose_) clog << "Processing channel: " << channelName << endl;
281
282		//set triggers for this channel
283		vector<string> triggerNames;
#	Line 259 \| Line 305 \| OSUAnalysis::OSUAnalysis (const edm::Par
305		//create cutFlow for this channel
306		cutFlows_.push_back (new CutFlow (fs_, channelName));
307		vector<TFileDirectory> directories; //vector of directories in the output file.
308	+	vector<TFileDirectory> treeDirectories; //vector of directories for trees in the output file.
309		vector<string> subSubDirNames;//subdirectories in each channel.
310		//get list of cuts for this channel
311		vector<edm::ParameterSet> cuts_ (channels_.at(currentChannel).getParameter<vector<edm::ParameterSet> >("cuts"));
#	Line 270 \| Line 317 \| OSUAnalysis::OSUAnalysis (const edm::Par
317		//store input collection for cut
318		string tempInputCollection = cuts_.at(currentCut).getParameter<string> ("inputCollection");
319		if(tempInputCollection == "muon-electron pairs") tempInputCollection = "electron-muon pairs";
320	+	if(tempInputCollection == "photon-electron pairs") tempInputCollection = "electron-photon pairs";
321	+	if(tempInputCollection == "photon-muon pairs") tempInputCollection = "muon-photon pairs";
322		if(tempInputCollection == "jet-electron pairs") tempInputCollection = "electron-jet pairs";
323		if(tempInputCollection == "jet-muon pairs") tempInputCollection = "muon-jet pairs";
324	+	if(tempInputCollection == "event-muon pairs") tempInputCollection = "muon-event pairs";
325	+	if(tempInputCollection == "jet-met pairs") tempInputCollection = "met-jet pairs";
326	+	if(tempInputCollection == "track-jet pairs") tempInputCollection = "track-jet pairs";
327	+	if(tempInputCollection == "jet-photon pairs") tempInputCollection = "photon-jet pairs";
328		if(tempInputCollection == "event-track pairs") tempInputCollection = "track-event pairs";
329		if(tempInputCollection == "secondary muon-muon pairs") tempInputCollection = "muon-secondary muon pairs";
330	+	if(tempInputCollection == "secondary jet-jet pairs") tempInputCollection = "jet-secondary jet pairs";
331	+	if(tempInputCollection == "secondary jet-muon pairs") tempInputCollection = "muon-secondary jet pairs";
332	+	if(tempInputCollection == "secondary photon-muon pairs") tempInputCollection = "muon-secondary photon pairs";
333	+	if(tempInputCollection == "secondary jet-photon pairs") tempInputCollection = "photon-secondary jet pairs";
334	+	if(tempInputCollection == "secondary jet-electron pairs") tempInputCollection = "electron-secondary jet pairs";
335		if(tempInputCollection == "secondary electron-electron pairs") tempInputCollection = "electron-secondary electron pairs";
336		if(tempInputCollection == "trigobj-electron pairs") tempInputCollection = "electron-trigobj pairs";
337		if(tempInputCollection == "trigobj-muon pairs") tempInputCollection = "muon-trigobj pairs";
338		tempCut.inputCollection = tempInputCollection;
339		if(tempInputCollection.find("pairs")==string::npos){ //just a single object
340		if(tempInputCollection.find("secondary")!=string::npos){//secondary object
341	<	int spaceIndex = tempInputCollection.find(" ");
342	<	int secondWordLength = tempInputCollection.size() - spaceIndex;
343	<	objectsToGet.push_back(tempInputCollection.substr(spaceIndex+1,secondWordLength));
341	>	if(tempInputCollection.find("secondary muons")!=string::npos){//treat secondary muons differently; allow for a different input collection
342	>	objectsToGet.push_back("secondary muons");
343	>	} else {
344	>	int spaceIndex = tempInputCollection.find(" ");
345	>	int secondWordLength = tempInputCollection.size() - spaceIndex;
346	>	objectsToGet.push_back(tempInputCollection.substr(spaceIndex+1,secondWordLength));
347	>	}
348		}
349		else{
350		objectsToGet.push_back(tempInputCollection);
351		}
352		objectsToCut.push_back(tempInputCollection);
353	+	objectsToFlag.push_back(tempInputCollection);
354		}
355		else{//pair of objects, need to add them both to objectsToGet
356		string obj1;
#	Line 297 \| Line 360 \| OSUAnalysis::OSUAnalysis (const edm::Par
360		objectsToCut.push_back(tempInputCollection);
361		objectsToCut.push_back(obj1);
362		objectsToCut.push_back(obj2);
363	+	objectsToFlag.push_back(tempInputCollection);
364	+	objectsToFlag.push_back(obj1);
365	+	objectsToFlag.push_back(obj2);
366		objectsToGet.push_back(tempInputCollection);
367		objectsToGet.push_back(obj1);
368		objectsToGet.push_back(obj2ToGet);
#	Line 309 \| Line 375 \| OSUAnalysis::OSUAnalysis (const edm::Par
375		string cutString = cuts_.at(currentCut).getParameter<string> ("cutString");
376		vector<string> cutStringVector = splitString(cutString);
377		if(cutStringVector.size()!=3 && cutStringVector.size() % 4 !=3){
378	<	cout << "Error: Didn't find the expected number elements in the following cut string: '" << cutString << "'\n";
378	>	clog << "Error: Didn't find the expected number elements in the following cut string: '" << cutString << "'\n";
379		exit(0);
380		}
381		tempCut.numSubcuts = (cutStringVector.size()+1)/4;
#	Line 335 \| Line 401 \| OSUAnalysis::OSUAnalysis (const edm::Par
401		string numberRequiredString = cuts_.at(currentCut).getParameter<string> ("numberRequired");
402		vector<string> numberRequiredVector = splitString(numberRequiredString);
403		if(numberRequiredVector.size()!=2){
404	<	cout << "Error: Didn't find two elements in the following number requirement string: '" << numberRequiredString << "'\n";
404	>	clog << "Error: Didn't find two elements in the following number requirement string: '" << numberRequiredString << "'\n";
405		exit(0);
406		}
407
#	Line 343 \| Line 409 \| OSUAnalysis::OSUAnalysis (const edm::Par
409		tempCut.numberRequired = numberRequiredInt;// number of objects required to pass the cut
410		tempCut.eventComparativeOperator = numberRequiredVector.at(0);// comparison to make
411
412	<	//Set up vectors to store the directories and subDIrectories for each channel.
412	>	//Set up vectors to store the directories and subDirectories for each channel.
413		string subSubDirName;
414		string tempCutName;
415		if(cuts_.at(currentCut).exists("alias")){
416		tempCutName = cuts_.at(currentCut).getParameter<string> ("alias");
417	<	subSubDirName = "After " + cuts_.at(currentCut).getParameter<string> ("alias") + " Cut Applied";
417	>	subSubDirName = "After " + tempCutName + " Cut Applied";
418		}
419		else{
420		//construct string for cutflow table
#	Line 359 \| Line 425 \| OSUAnalysis::OSUAnalysis (const edm::Par
425		subSubDirName = "After " + numberRequiredString + " " + collectionString + " with " + cutString + " Cut Applied";
426		}
427
428	+	tempCut.isVeto = false;
429	+	if(cuts_.at(currentCut).exists("isVeto")){
430	+	bool isVeto = cuts_.at(currentCut).getParameter<bool> ("isVeto");
431	+	if (isVeto == true) tempCut.isVeto = true;
432	+	}
433		subSubDirNames.push_back(subSubDirName);
434		tempCut.name = tempCutName;
435	+	if (verbose_) clog << "Setting up cut, index: " << currentCut << ", input collection: " << tempInputCollection<< ", name: " << tempCut.name << endl;
436
437		tempChannel.cuts.push_back(tempCut);
438
#	Line 374 \| Line 446 \| OSUAnalysis::OSUAnalysis (const edm::Par
446		//loop over the cuts to set up subdirectory for each cut if GetPlotsAfterEachCut_ is true.
447		if(GetPlotsAfterEachCut_){
448		for( uint currentDir=0; currentDir != subSubDirNames.size(); currentDir++){
449	<	TFileDirectory subSubDir = subDir.mkdir( subSubDirNames[currentDir] );
450	<	directories.push_back(subSubDir);
451	<	map<string, TH1D*> oneDhistoMap;
452	<	oneDHistsTmp.push_back(oneDhistoMap);
453	<	map<string, TH2D*> twoDhistoMap;
454	<	twoDHistsTmp.push_back(twoDhistoMap);
449	>	TFileDirectory subSubDir = subDir.mkdir( subSubDirNames[currentDir] );
450	>	directories.push_back(subSubDir);
451	>	map<string, TH1D*> oneDhistoMap;
452	>	oneDHistsTmp.push_back(oneDhistoMap);
453	>	map<string, TH2D*> twoDhistoMap;
454	>	twoDHistsTmp.push_back(twoDhistoMap);
455		}
456	+	treeDirectories.push_back(subDir);
457		oneDHists_.push_back(oneDHistsTmp);
458		twoDHists_.push_back(twoDHistsTmp);
459		}
#	Line 393 \| Line 466 \| OSUAnalysis::OSUAnalysis (const edm::Par
466		oneDHists_.push_back(oneDHistsTmp);
467		twoDHists_.push_back(twoDHistsTmp);
468		directories.push_back(subDir);
469	+	treeDirectories.push_back(subDir);
470
471		}
472
473	+	for(uint currentDir = 0; !useEDMFormat_ && currentDir != treeDirectories.size(); currentDir++){
474	+	TTree* newTree = treeDirectories.at(currentDir).make<TTree> (TString("BNTree_"+channelLabel), TString("BNTree_"+channelLabel));
475	+	BNTrees_.push_back(newTree);
476	+	BNTrees_.back()->Branch("event_runInt", &BNTreeBranchVals_runInt_, "event_runInt/I");
477	+	BNTrees_.back()->Branch("event_lumiInt", &BNTreeBranchVals_lumiInt_, "event_lumiInt/I");
478	+	BNTrees_.back()->Branch("event_evtLong", &BNTreeBranchVals_evtLong_, "event_evtLong/L");
479	+	for (uint iBranch = 0; iBranch < treeBranches_.size(); iBranch++){
480	+	BranchSpecs currentVar = treeBranches_.at(iBranch);
481	+	vector<float> newVec;
482	+	BNTreeBranchVals_[currentVar.name] = newVec;
483	+	BNTrees_.back()->Branch(TString(currentVar.name), &BNTreeBranchVals_.at(currentVar.name));
484	+	} // end for (uint iBranch = 0; iBranch < treeBranches_.size(); iBranch++)
485	+	}
486
487		//book all histograms included in the configuration
488		for(uint currentDir = 0; currentDir != directories.size(); currentDir++){//loop over all the directories.
489
403	–	TTree* newTree = directories.at(currentDir).make<TTree> (TString("BNTree_"+channelLabel), TString("BNTree_"+channelLabel));
404	–	BNTrees_.push_back(newTree);
405	–
406	–	for (uint iBranch = 0; iBranch < treeBranches_.size(); iBranch++){
407	–	BranchSpecs currentVar = treeBranches_.at(iBranch);
408	–	vector<float> newVec;
409	–	BNTreeBranchVals_[currentVar.name] = newVec;
410	–	BNTrees_.back()->Branch(TString(currentVar.name), &BNTreeBranchVals_.at(currentVar.name));
411	–
412	–	} // end for (uint iBranch = 0; iBranch < treeBranches_.size(); iBranch++){
413	–
414	–
490		for(uint currentHistogramIndex = 0; currentHistogramIndex != histograms.size(); currentHistogramIndex++){
491
492	<	histogram currentHistogram = histograms.at(currentHistogramIndex);
493	<	int numBinsElements = currentHistogram.bins.size();
494	<	int numInputVariables = currentHistogram.inputVariables.size();
495	<	int numBinEdgesX = currentHistogram.variableBinsX.size();
496	<	int numBinEdgesY = currentHistogram.variableBinsY.size();
497	<
498	<	if(numBinsElements == 1){
499	<	if(numBinEdgesX > 1){
500	<	if(numBinEdgesY > 1)
501	<	numBinsElements = 6;
502	<	else
503	<	numBinsElements = 3;
504	<	}
505	<	}
506	<	if(numBinsElements != 3 && numBinsElements !=6){
507	<	cout << "Error: Didn't find correct number of bin specifications for histogram named '" << currentHistogram.name << "'\n";
508	<	exit(0);
509	<	}
510	<	else if((numBinsElements == 3 && numInputVariables !=1) \|\| (numBinsElements == 6 && numInputVariables!=2)){
511	<	cout << "Error: Didn't find correct number of input variables for histogram named '" << currentHistogram.name << "'\n";
512	<	exit(0);
513	<	}
514	<	else if(numBinsElements == 3){
515	<	if (currentHistogram.bins.size () == 3)
516	<	oneDHists_.at(currentChannel).at(currentDir)[currentHistogram.name] = directories.at(currentDir).make<TH1D> (TString(currentHistogram.name),channelLabel+" channel: "+currentHistogram.title, currentHistogram.bins.at(0), currentHistogram.bins.at(1), currentHistogram.bins.at(2));
517	<	else
518	<	{
519	<	oneDHists_.at(currentChannel).at(currentDir)[currentHistogram.name] = directories.at(currentDir).make<TH1D> (TString(currentHistogram.name),channelLabel+" channel: "+currentHistogram.title, numBinEdgesX - 1, currentHistogram.variableBinsX.data ());
520	<	}
521	<	}
522	<	else if(numBinsElements == 6){
523	<	if (currentHistogram.bins.size () == 6)
524	<	twoDHists_.at(currentChannel).at(currentDir)[currentHistogram.name] = directories.at(currentDir).make<TH2D> (TString(currentHistogram.name),channelLabel+" channel: "+currentHistogram.title, currentHistogram.bins.at(0), currentHistogram.bins.at(1), currentHistogram.bins.at(2),currentHistogram.bins.at(3),currentHistogram.bins.at(4),currentHistogram.bins.at(5));
525	<	else
526	<	twoDHists_.at(currentChannel).at(currentDir)[currentHistogram.name] = directories.at(currentDir).make<TH2D> (TString(currentHistogram.name),channelLabel+" channel: "+currentHistogram.title, numBinEdgesX - 1, currentHistogram.variableBinsX.data (), numBinEdgesY - 1, currentHistogram.variableBinsY.data ());
527	<	}
492	>	histogram currentHistogram = histograms.at(currentHistogramIndex);
493	>	int numBinsElements = currentHistogram.bins.size();
494	>	int numInputVariables = currentHistogram.inputVariables.size();
495	>	int numBinEdgesX = currentHistogram.variableBinsX.size();
496	>	int numBinEdgesY = currentHistogram.variableBinsY.size();
497	>
498	>	if(numBinsElements == 1){
499	>	if(numBinEdgesX > 1){
500	>	if(numBinEdgesY > 1)
501	>	numBinsElements = 6;
502	>	else
503	>	numBinsElements = 3;
504	>	}
505	>	}
506	>	if(numBinsElements != 3 && numBinsElements !=6){
507	>	clog << "Error: Didn't find correct number of bin specifications for histogram named '" << currentHistogram.name << "'\n";
508	>	exit(0);
509	>	}
510	>	else if((numBinsElements == 3 && numInputVariables !=1) \|\| (numBinsElements == 6 && numInputVariables!=2)){
511	>	clog << "Error: Didn't find correct number of input variables for histogram named '" << currentHistogram.name << "'\n";
512	>	exit(0);
513	>	}
514	>	else if(numBinsElements == 3){
515	>	if (currentHistogram.bins.size () == 3)
516	>	oneDHists_.at(currentChannel).at(currentDir)[currentHistogram.name] = directories.at(currentDir).make<TH1D> (TString(currentHistogram.name),channelLabel+" channel: "+currentHistogram.title, currentHistogram.bins.at(0), currentHistogram.bins.at(1), currentHistogram.bins.at(2));
517	>	else
518	>	{
519	>	oneDHists_.at(currentChannel).at(currentDir)[currentHistogram.name] = directories.at(currentDir).make<TH1D> (TString(currentHistogram.name),channelLabel+" channel: "+currentHistogram.title, numBinEdgesX - 1, currentHistogram.variableBinsX.data ());
520	>	}
521	>	}
522	>	else if(numBinsElements == 6){
523	>	if (currentHistogram.bins.size () == 6)
524	>	twoDHists_.at(currentChannel).at(currentDir)[currentHistogram.name] = directories.at(currentDir).make<TH2D> (TString(currentHistogram.name),channelLabel+" channel: "+currentHistogram.title, currentHistogram.bins.at(0), currentHistogram.bins.at(1), currentHistogram.bins.at(2),currentHistogram.bins.at(3),currentHistogram.bins.at(4),currentHistogram.bins.at(5));
525	>	else
526	>	twoDHists_.at(currentChannel).at(currentDir)[currentHistogram.name] = directories.at(currentDir).make<TH2D> (TString(currentHistogram.name),channelLabel+" channel: "+currentHistogram.title, numBinEdgesX - 1, currentHistogram.variableBinsX.data (), numBinEdgesY - 1, currentHistogram.variableBinsY.data ());
527	>	}
528
529
530	<	if(currentHistogram.name.find("GenMatch")==string::npos) continue;
530	>	if(currentHistogram.name.find("GenMatch")==string::npos) continue;
531
532	<	// bin particle type
533	<	// --- -------------
534	<	// 0 unmatched
535	<	// 1 u
536	<	// 2 d
537	<	// 3 s
538	<	// 4 c
539	<	// 5 b
540	<	// 6 t
541	<	// 7 e
542	<	// 8 mu
543	<	// 9 tau
544	<	// 10 nu
545	<	// 11 g
546	<	// 12 gamma
547	<	// 13 Z
548	<	// 14 W
549	<	// 15 light meson
550	<	// 16 K meson
551	<	// 17 D meson
552	<	// 18 B meson
553	<	// 19 light baryon
554	<	// 20 strange baryon
555	<	// 21 charm baryon
556	<	// 22 bottom baryon
557	<	// 23 QCD string
558	<	// 24 other
559	<
560	<	vector<TString> labelArray;
561	<	labelArray.push_back("unmatched");
562	<	labelArray.push_back("u");
563	<	labelArray.push_back("d");
564	<	labelArray.push_back("s");
565	<	labelArray.push_back("c");
566	<	labelArray.push_back("b");
567	<	labelArray.push_back("t");
568	<	labelArray.push_back("e");
569	<	labelArray.push_back("#mu");
570	<	labelArray.push_back("#tau");
571	<	labelArray.push_back("#nu");
572	<	labelArray.push_back("g");
573	<	labelArray.push_back("#gamma");
574	<	labelArray.push_back("Z");
575	<	labelArray.push_back("W");
576	<	labelArray.push_back("light meson");
577	<	labelArray.push_back("K meson");
578	<	labelArray.push_back("D meson");
579	<	labelArray.push_back("B meson");
580	<	labelArray.push_back("light baryon");
581	<	labelArray.push_back("strange baryon");
582	<	labelArray.push_back("charm baryon");
583	<	labelArray.push_back("bottom baryon");
584	<	labelArray.push_back("QCD string");
585	<	labelArray.push_back("other");
586	<
587	<	for(int bin = 0; bin !=currentHistogram.bins.at(0); bin++){
588	<	if(currentHistogram.name.find("GenMatchIdVsMotherId")==string::npos && currentHistogram.name.find("GenMatchIdVsGrandmotherId")==string::npos) {
589	<	oneDHists_.at(currentChannel).at(currentDir)[currentHistogram.name]->GetXaxis()->SetBinLabel(bin+1,labelArray.at(bin));
590	<	}
591	<	else {
592	<	twoDHists_.at(currentChannel).at(currentDir)[currentHistogram.name]->GetYaxis()->SetBinLabel(bin+1,labelArray.at(currentHistogram.bins.at(0)-bin-1));
593	<	twoDHists_.at(currentChannel).at(currentDir)[currentHistogram.name]->GetXaxis()->SetBinLabel(bin+1,labelArray.at(bin));
594	<	}
595	<	}
596	<	if(currentHistogram.name.find("GenMatchIdVsMotherId")!=string::npos \|\| currentHistogram.name.find("GenMatchIdVsGrandmotherId")!=string::npos) {
597	<	twoDHists_.at(currentChannel).at(currentDir)[currentHistogram.name]->GetXaxis()->CenterTitle();
598	<	twoDHists_.at(currentChannel).at(currentDir)[currentHistogram.name]->GetYaxis()->CenterTitle();
599	<	}
532	>	// bin particle type
533	>	// --- -------------
534	>	// 0 unmatched
535	>	// 1 u
536	>	// 2 d
537	>	// 3 s
538	>	// 4 c
539	>	// 5 b
540	>	// 6 t
541	>	// 7 e
542	>	// 8 mu
543	>	// 9 tau
544	>	// 10 nu
545	>	// 11 g
546	>	// 12 gamma
547	>	// 13 Z
548	>	// 14 W
549	>	// 15 light meson
550	>	// 16 K meson
551	>	// 17 D meson
552	>	// 18 B meson
553	>	// 19 light baryon
554	>	// 20 strange baryon
555	>	// 21 charm baryon
556	>	// 22 bottom baryon
557	>	// 23 QCD string
558	>	// 24 other
559	>
560	>	vector<TString> labelArray;
561	>	labelArray.push_back("unmatched");
562	>	labelArray.push_back("u");
563	>	labelArray.push_back("d");
564	>	labelArray.push_back("s");
565	>	labelArray.push_back("c");
566	>	labelArray.push_back("b");
567	>	labelArray.push_back("t");
568	>	labelArray.push_back("e");
569	>	labelArray.push_back("#mu");
570	>	labelArray.push_back("#tau");
571	>	labelArray.push_back("#nu");
572	>	labelArray.push_back("g");
573	>	labelArray.push_back("#gamma");
574	>	labelArray.push_back("Z");
575	>	labelArray.push_back("W");
576	>	labelArray.push_back("light meson");
577	>	labelArray.push_back("K meson");
578	>	labelArray.push_back("D meson");
579	>	labelArray.push_back("B meson");
580	>	labelArray.push_back("light baryon");
581	>	labelArray.push_back("strange baryon");
582	>	labelArray.push_back("charm baryon");
583	>	labelArray.push_back("bottom baryon");
584	>	labelArray.push_back("QCD string");
585	>	labelArray.push_back("other");
586	>
587	>	for(int bin = 0; bin !=currentHistogram.bins.at(0); bin++){
588	>	if(currentHistogram.name.find("GenMatchIdVsMotherId")==string::npos && currentHistogram.name.find("GenMatchIdVsGrandmotherId")==string::npos) {
589	>	oneDHists_.at(currentChannel).at(currentDir)[currentHistogram.name]->GetXaxis()->SetBinLabel(bin+1,labelArray.at(bin));
590	>	}
591	>	else {
592	>	twoDHists_.at(currentChannel).at(currentDir)[currentHistogram.name]->GetYaxis()->SetBinLabel(bin+1,labelArray.at(currentHistogram.bins.at(0)-bin-1));
593	>	twoDHists_.at(currentChannel).at(currentDir)[currentHistogram.name]->GetXaxis()->SetBinLabel(bin+1,labelArray.at(bin));
594	>	}
595	>	}
596	>	if(currentHistogram.name.find("GenMatchIdVsMotherId")!=string::npos \|\| currentHistogram.name.find("GenMatchIdVsGrandmotherId")!=string::npos) {
597	>	twoDHists_.at(currentChannel).at(currentDir)[currentHistogram.name]->GetXaxis()->CenterTitle();
598	>	twoDHists_.at(currentChannel).at(currentDir)[currentHistogram.name]->GetYaxis()->CenterTitle();
599	>	}
600
601	<	} // end for(uint currentHistogramIndex = 0; currentHistogramIndex != histograms.size(); currentHistogramIndex++){
601	>	} // end for(uint currentHistogramIndex = 0; currentHistogramIndex != histograms.size(); currentHistogramIndex++)
602
603
604		// Book a histogram for the number of each object type to be plotted.
605		// Name of objectToPlot here must match the name specified in OSUAnalysis::analyze().
606		for (uint currentObjectIndex = 0; currentObjectIndex != objectsToPlot.size(); currentObjectIndex++){
607	<	string currentObject = objectsToPlot.at(currentObjectIndex);
608	<	int maxNum = 10;
609	<	if(currentObject == "mcparticles") maxNum = 50;
610	<	else if(currentObject == "primaryvertexs") maxNum = 50;
611	<
612	<	if(currentObject == "muon-muon pairs") currentObject = "dimuonPairs";
613	<	else if(currentObject == "electron-electron pairs") currentObject = "dielectronPairs";
614	<	else if(currentObject == "electron-muon pairs") currentObject = "electronMuonPairs";
615	<	else if(currentObject == "secondary jets") currentObject = "secondaryJets";
616	<	else if(currentObject == "jet-jet pairs") currentObject = "dijetPairs";
617	<	else if(currentObject == "electron-jet pairs") currentObject = "electronJetPairs";
618	<	else if(currentObject == "muon-jet pairs") currentObject = "muonJetPairs";
619	<	else if(currentObject == "track-event pairs") currentObject = "trackEventPairs";
620	<	else if(currentObject == "electron-track pairs") currentObject = "electronTrackPairs";
621	<	else if(currentObject == "muon-track pairs") currentObject = "muonTrackPairs";
622	<	else if(currentObject == "muon-tau pairs") currentObject = "muonTauPairs";
623	<	else if(currentObject == "tau-tau pairs") currentObject = "ditauPairs";
624	<	else if(currentObject == "tau-track pairs") currentObject = "tauTrackPairs";
625	<	else if(currentObject == "muon-secondary muon pairs") currentObject = "muonSecondaryMuonPairs";
626	<	else if(currentObject == "secondary muons") currentObject = "secondaryMuons";
627	<	else if(currentObject == "electron-secondary electron pairs") currentObject = "electronSecondaryElectronPairs";
628	<	else if(currentObject == "secondary electrons") currentObject = "secondaryElectrons";
629	<	else if(currentObject == "electron-trigobj pairs") currentObject = "electronTrigobjPairs";
630	<	else if(currentObject == "muon-trigobj pairs") currentObject = "muonTrigobjPairs";
631	<
632	<	currentObject.at(0) = toupper(currentObject.at(0));
633	<	string histoName = "num" + currentObject;
634	<
635	<	if(histoName == "numPrimaryvertexs"){
636	<	string newHistoName = histoName + "BeforePileupCorrection";
637	<	oneDHists_.at(currentChannel).at(currentDir)[newHistoName] = directories.at(currentDir).make<TH1D> (TString(newHistoName),channelLabel+" channel: Number of Selected "+currentObject+" Before Pileup Correction; # "+currentObject, maxNum, 0, maxNum);
638	<	newHistoName = histoName + "AfterPileupCorrection";
639	<	oneDHists_.at(currentChannel).at(currentDir)[newHistoName] = directories.at(currentDir).make<TH1D> (TString(newHistoName),channelLabel+" channel: Number of Selected "+currentObject+ " After Pileup Correction; # "+currentObject, maxNum, 0, maxNum);
640	<	}
641	<	else
642	<	oneDHists_.at(currentChannel).at(currentDir)[histoName] = directories.at(currentDir).make<TH1D> (TString(histoName),channelLabel+" channel: Number of Selected "+currentObject+"; # "+currentObject, maxNum, 0, maxNum);
607	>	string currentObject = objectsToPlot.at(currentObjectIndex);
608	>	int maxNum = 10;
609	>	if(currentObject == "mcparticles") maxNum = 50;
610	>	else if(currentObject == "primaryvertexs") maxNum = 50;
611	>
612	>	if(currentObject == "muon-muon pairs") currentObject = "dimuonPairs";
613	>	else if(currentObject == "electron-electron pairs") currentObject = "dielectronPairs";
614	>	else if(currentObject == "electron-muon pairs") currentObject = "electronMuonPairs";
615	>	else if(currentObject == "electron-photon pairs") currentObject = "electronPhotonPairs";
616	>	else if(currentObject == "muon-photon pairs") currentObject = "muonPhotonPairs";
617	>	else if(currentObject == "secondary jets") currentObject = "secondaryJets";
618	>	else if(currentObject == "secondary photons") currentObject = "secondaryPhotons";
619	>	else if(currentObject == "jet-jet pairs") currentObject = "dijetPairs";
620	>	else if(currentObject == "jet-secondary jet pairs") currentObject = "jetSecondaryJetPairs";
621	>	else if(currentObject == "electron-jet pairs") currentObject = "electronJetPairs";
622	>	else if(currentObject == "muon-jet pairs") currentObject = "muonJetPairs";
623	>	else if(currentObject == "muon-event pairs") currentObject = "muonEventPairs";
624	>	else if(currentObject == "photon-jet pairs") currentObject = "photonJetPairs";
625	>	else if(currentObject == "met-jet pairs") currentObject = "metJetPairs";
626	>	else if(currentObject == "track-jet pairs") currentObject = "trackJetPairs";
627	>	else if(currentObject == "muon-secondary jet pairs") currentObject = "muonSecondaryJetPairs";
628	>	else if(currentObject == "muon-secondary photon pairs") currentObject = "muonSecondaryPhotonPairs";
629	>	else if(currentObject == "photon-secondary jet pairs") currentObject = "photonSecondaryJetPairs";
630	>	else if(currentObject == "electron-secondary jet pairs") currentObject = "electronSecondaryJetPairs";
631	>	else if(currentObject == "track-event pairs") currentObject = "trackEventPairs";
632	>	else if(currentObject == "electron-track pairs") currentObject = "electronTrackPairs";
633	>	else if(currentObject == "muon-track pairs") currentObject = "muonTrackPairs";
634	>	else if(currentObject == "secondary muon-track pairs") currentObject = "secondaryMuonTrackPairs";
635	>	else if(currentObject == "muon-tau pairs") currentObject = "muonTauPairs";
636	>	else if(currentObject == "tau-tau pairs") currentObject = "ditauPairs";
637	>	else if(currentObject == "tau-track pairs") currentObject = "tauTrackPairs";
638	>	else if(currentObject == "muon-secondary muon pairs") currentObject = "muonSecondaryMuonPairs";
639	>	else if(currentObject == "secondary muons") currentObject = "secondaryMuons";
640	>	else if(currentObject == "electron-secondary electron pairs") currentObject = "electronSecondaryElectronPairs";
641	>	else if(currentObject == "secondary electrons") currentObject = "secondaryElectrons";
642	>	else if(currentObject == "electron-trigobj pairs") currentObject = "electronTrigobjPairs";
643	>	else if(currentObject == "muon-trigobj pairs") currentObject = "muonTrigobjPairs";
644	>	else if(currentObject == "electron-mcparticle pairs") currentObject = "electronMCparticlePairs";
645	>
646	>
647	>	currentObject.at(0) = toupper(currentObject.at(0));
648	>	string histoName = "num" + currentObject;
649	>
650	>	if(histoName == "numPrimaryvertexs"){
651	>	string newHistoName = histoName + "BeforePileupCorrection";
652	>	oneDHists_.at(currentChannel).at(currentDir)[newHistoName] = directories.at(currentDir).make<TH1D> (TString(newHistoName),channelLabel+" channel: Number of Selected "+currentObject+" Before Pileup Correction; # "+currentObject, maxNum, 0, maxNum);
653	>	newHistoName = histoName + "AfterPileupCorrection";
654	>	oneDHists_.at(currentChannel).at(currentDir)[newHistoName] = directories.at(currentDir).make<TH1D> (TString(newHistoName),channelLabel+" channel: Number of Selected "+currentObject+ " After Pileup Correction; # "+currentObject, maxNum, 0, maxNum);
655	>	}
656	>	else
657	>	oneDHists_.at(currentChannel).at(currentDir)[histoName] = directories.at(currentDir).make<TH1D> (TString(histoName),channelLabel+" channel: Number of Selected "+currentObject+"; # "+currentObject, maxNum, 0, maxNum);
658		}
659	+
660	+	if (verbose_) {
661	+	clog << "List of 1D histograms booked for channel " << channelName << " and directory " << currentDir << ":" << endl;
662	+	for(map<string, TH1D*>::iterator
663	+	iter = oneDHists_.at(currentChannel).at(currentDir).begin();
664	+	iter != oneDHists_.at(currentChannel).at(currentDir).end();
665	+	iter++) {
666	+	clog << " " << iter->first
667	+	<< ": name=" << iter->second->GetName()
668	+	<< ", title=" << iter->second->GetTitle()
669	+	<< ", bins=(" << iter->second->GetNbinsX()
670	+	<< "," << iter->second->GetXaxis()->GetXmin()
671	+	<< "," << iter->second->GetXaxis()->GetXmax()
672	+	<< ")" << endl;
673	+	}
674	+	clog << "List of 2D histograms booked for channel " << channelName << " and directory " << currentDir << ":" << endl;
675	+	for(map<string, TH2D*>::iterator
676	+	iter = twoDHists_.at(currentChannel).at(currentDir).begin();
677	+	iter != twoDHists_.at(currentChannel).at(currentDir).end();
678	+	iter++) {
679	+	clog << " " << iter->first
680	+	<< ": name=" << iter->second->GetName()
681	+	<< ", title=" << iter->second->GetTitle()
682	+	<< ", binsX=(" << iter->second->GetNbinsX()
683	+	<< "," << iter->second->GetXaxis()->GetXmin()
684	+	<< "," << iter->second->GetXaxis()->GetXmax()
685	+	<< ")"
686	+	<< ", binsY=(" << iter->second->GetNbinsY()
687	+	<< "," << iter->second->GetYaxis()->GetXmin()
688	+	<< "," << iter->second->GetYaxis()->GetXmax()
689	+	<< ")"
690	+	<< endl;
691	+	}
692	+	}
693	+
694		}//end of loop over directories
695		channels.push_back(tempChannel);
696		tempChannel.cuts.clear();
697		}//end loop over channels
698
699
700	+	// Create the cutflow histogram and fill with 0 weight, in case no events are found in the input file.
701	+	for(uint currentChannelIndex = 0; currentChannelIndex != channels.size(); currentChannelIndex++){
702	+	channel currentChannel = channels.at(currentChannelIndex);
703	+	if(currentChannel.triggers.size() != 0 \|\| currentChannel.triggersToVeto.size() != 0){ //triggers specified
704	+	cutFlows_.at(currentChannelIndex)->at("trigger") = true;
705	+	}
706	+	for(uint currentCutIndex = 0; currentCutIndex != currentChannel.cuts.size(); currentCutIndex++){
707	+	cut currentCut = currentChannel.cuts.at(currentCutIndex);
708	+	cutFlows_.at(currentChannelIndex)->at (currentCut.name) = true;
709	+	}
710	+	cutFlows_.at(currentChannelIndex)->fillCutFlow(0); // fill cutflow with 0 weight, just to create the cutflow histograms
711	+	}
712	+
713		//make unique vector of objects we need to get from the event
714		sort( objectsToGet.begin(), objectsToGet.end() );
715		objectsToGet.erase( unique( objectsToGet.begin(), objectsToGet.end() ), objectsToGet.end() );
716		//make unique vector of objects we need to cut on
717		sort( objectsToCut.begin(), objectsToCut.end() );
718		objectsToCut.erase( unique( objectsToCut.begin(), objectsToCut.end() ), objectsToCut.end() );
719	+	//make unique vector of objects we need to set flags for
720	+	sort( objectsToFlag.begin(), objectsToFlag.end() );
721	+	objectsToFlag.erase( unique( objectsToFlag.begin(), objectsToFlag.end() ), objectsToFlag.end() );
722
723	+	// Move all paired objects to the end of the list, so that the flags for single objects are always set before those of paired objects.
724	+	for (uint i=0; i<objectsToFlag.size(); i++) {
725	+	if (objectsToFlag.at(i).find("pairs")!=string::npos) { // if it contains "pairs"
726	+	objectsToFlag.push_back(objectsToFlag.at(i));
727	+	objectsToFlag.erase(objectsToFlag.begin()+i);
728	+	}
729	+	}
730	+
731	+	if (verbose_) {
732	+	clog << "List of channels:" << endl;
733	+	for (uint i=0; i<channels.size(); i++) {
734	+	clog << " " << channels.at(i).name << endl;
735	+	}
736	+	clog << "List of objects to get:" << endl;
737	+	for (uint i=0; i<objectsToGet.size(); i++) {
738	+	clog << " " << objectsToGet.at(i) << endl;
739	+	}
740	+	clog << "List of objects to plot:" << endl;
741	+	for (uint i=0; i<objectsToPlot.size(); i++) {
742	+	clog << " " << objectsToPlot.at(i) << endl;
743	+	}
744	+	clog << "List of objects to cut:" << endl;
745	+	for (uint i=0; i<objectsToCut.size(); i++) {
746	+	clog << " " << objectsToCut.at(i) << endl;
747	+	}
748	+	clog << "List of objects to flag:" << endl;
749	+	for (uint i=0; i<objectsToFlag.size(); i++) {
750	+	clog << " " << objectsToFlag.at(i) << endl;
751	+	}
752	+	}
753	+
754	+	produces<map<string, bool> > ("channelDecisions");
755	+
756	+	if (printEventInfo_) {
757	+	findEventsLog = new ofstream();
758	+	findEventsLog->open("findEvents.txt");
759	+	clog << "Listing run:lumi:event in file findEvents.txt for events that pass full selection (of any channel)." << endl;
760	+	} else {
761	+	findEventsLog = 0;
762	+	}
763	+
764	+	isFirstEvent_ = true;
765	+
766	+	if (verbose_) clog << "Finished OSUAnalysis::OSUAnalysis constructor." << endl;
767	+
768	+
769	+	} // end constructor OSUAnalysis::OSUAnalysis()
770
583	–	}
771
772		OSUAnalysis::~OSUAnalysis ()
773		{
774	+
775	+	if (verbose_) clog << "Beginning OSUAnalysis::OSUAnalysis destructor." << endl;
776	+
777		// Destroying the CutFlow objects causes the cut flow numbers and time
778		// information to be printed to standard output.
779		for(uint currentChannel = 0; currentChannel != channels_.size(); currentChannel++){
780		delete cutFlows_.at(currentChannel);
781		}
782	+
783	+	if (printEventInfo_ && findEventsLog) findEventsLog->close();
784	+
785	+	clog << "=============================================" << endl;
786	+	clog << "Successfully completed OSUAnalysis." << endl;
787	+	clog << "=============================================" << endl;
788	+
789	+	if (verbose_) clog << "Finished OSUAnalysis::OSUAnalysis destructor." << endl;
790	+
791		}
792
793		void
794	<	OSUAnalysis::analyze (const edm::Event &event, const edm::EventSetup &setup)
794	>	OSUAnalysis::produce (edm::Event &event, const edm::EventSetup &setup)
795		{
597	–
796		// Retrieve necessary collections from the event.
797
798	<	if (find(objectsToGet.begin(), objectsToGet.end(), "triggers") != objectsToGet.end())
798	>	if (verbose_) clog << "Beginning OSUAnalysis::produce." << endl;
799	>
800	>	if (find(objectsToGet.begin(), objectsToGet.end(), "triggers") != objectsToGet.end()) {
801		event.getByLabel (triggers_, triggers);
802	+	if (!triggers.product()) cout << "ERROR: could not get triggers input collection" << endl;
803	+	}
804
805	<	if (find(objectsToGet.begin(), objectsToGet.end(), "trigobjs") != objectsToGet.end())
805	>	if (find(objectsToGet.begin(), objectsToGet.end(), "trigobjs") != objectsToGet.end()) {
806		event.getByLabel (trigobjs_, trigobjs);
807	+	if (!trigobjs.product()) cout << "ERROR: could not get trigobjs input collection" << endl;
808	+	}
809
810	<	if (find(objectsToGet.begin(), objectsToGet.end(), "jets") != objectsToGet.end())
810	>	if (find(objectsToGet.begin(), objectsToGet.end(), "jets") != objectsToGet.end()) {
811		event.getByLabel (jets_, jets);
812	+	if (!jets.product()) cout << "ERROR: could not get jets input collection" << endl;
813	+	}
814
815	<	if (find(objectsToGet.begin(), objectsToGet.end(), "muons") != objectsToGet.end())
815	>	if (find(objectsToGet.begin(), objectsToGet.end(), "muons") != objectsToGet.end()) {
816		event.getByLabel (muons_, muons);
817	+	if (!muons.product()) cout << "ERROR: could not get muons input collection" << endl;
818	+	}
819
820	<	if (find(objectsToGet.begin(), objectsToGet.end(), "electrons") != objectsToGet.end())
820	>	if (find(objectsToGet.begin(), objectsToGet.end(), "secondary muons") != objectsToGet.end()) {
821	>	event.getByLabel (secMuons_, secMuons);
822	>	if (!secMuons.product()) cout << "ERROR: could not get secMuons input collection" << endl;
823	>	}
824	>
825	>	if (find(objectsToGet.begin(), objectsToGet.end(), "electrons") != objectsToGet.end()) {
826		event.getByLabel (electrons_, electrons);
827	+	if (!electrons.product()) cout << "ERROR: could not get electrons input collection" << endl;
828	+	}
829
830	<	if (find(objectsToGet.begin(), objectsToGet.end(), "events") != objectsToGet.end())
830	>	if (find(objectsToGet.begin(), objectsToGet.end(), "events") != objectsToGet.end()) {
831		event.getByLabel (events_, events);
832	+	if (!events.product()) cout << "ERROR: could not get events input collection" << endl;
833	+	}
834
835	<	if (find(objectsToGet.begin(), objectsToGet.end(), "taus") != objectsToGet.end())
835	>	if (find(objectsToGet.begin(), objectsToGet.end(), "taus") != objectsToGet.end()) {
836		event.getByLabel (taus_, taus);
837	+	if (!taus.product()) cout << "ERROR: could not get taus input collection" << endl;
838	+	}
839
840	<	if (find(objectsToGet.begin(), objectsToGet.end(), "mets") != objectsToGet.end())
840	>	if (find(objectsToGet.begin(), objectsToGet.end(), "mets") != objectsToGet.end()) {
841		event.getByLabel (mets_, mets);
842	+	if (!mets.product()) cout << "ERROR: could not get mets input collection" << endl;
843	+	}
844
845	<	if (find(objectsToGet.begin(), objectsToGet.end(), "tracks") != objectsToGet.end())
845	>	if (find(objectsToGet.begin(), objectsToGet.end(), "tracks") != objectsToGet.end()) {
846		event.getByLabel (tracks_, tracks);
847	+	if (!tracks.product()) cout << "ERROR: could not get tracks input collection" << endl;
848	+	}
849
850	<	if (find(objectsToGet.begin(), objectsToGet.end(), "genjets") != objectsToGet.end())
850	>	if (find(objectsToGet.begin(), objectsToGet.end(), "genjets") != objectsToGet.end()) {
851		event.getByLabel (genjets_, genjets);
852	+	if (!genjets.product()) cout << "ERROR: could not get genjets input collection" << endl;
853	+	}
854
855	<	if (find(objectsToGet.begin(), objectsToGet.end(), "mcparticles") != objectsToGet.end())
855	>	if (find(objectsToGet.begin(), objectsToGet.end(), "mcparticles") != objectsToGet.end()) {
856		event.getByLabel (mcparticles_, mcparticles);
857	+	if (!mcparticles.product()) cout << "ERROR: could not get mcparticles input collection" << endl;
858	+	}
859
860	<	if (find(objectsToGet.begin(), objectsToGet.end(), "primaryvertexs") != objectsToGet.end())
860	>	if (find(objectsToGet.begin(), objectsToGet.end(), "primaryvertexs") != objectsToGet.end()) {
861		event.getByLabel (primaryvertexs_, primaryvertexs);
862	+	if (!primaryvertexs.product()) cout << "ERROR: could not get primaryvertexs input collection" << endl;
863	+	}
864
865	<	if (find(objectsToGet.begin(), objectsToGet.end(), "bxlumis") != objectsToGet.end())
865	>	if (find(objectsToGet.begin(), objectsToGet.end(), "bxlumis") != objectsToGet.end()) {
866		event.getByLabel (bxlumis_, bxlumis);
867	+	if (!bxlumis.product()) cout << "ERROR: could not get bxlumis input collection" << endl;
868	+	}
869
870	<	if (find(objectsToGet.begin(), objectsToGet.end(), "photons") != objectsToGet.end())
870	>	if (find(objectsToGet.begin(), objectsToGet.end(), "photons") != objectsToGet.end()) {
871		event.getByLabel (photons_, photons);
872	+	if (!photons.product()) cout << "ERROR: could not get photons input collection" << endl;
873	+	}
874
875	<	if (find(objectsToGet.begin(), objectsToGet.end(), "superclusters") != objectsToGet.end())
875	>	if (find(objectsToGet.begin(), objectsToGet.end(), "superclusters") != objectsToGet.end()) {
876		event.getByLabel (superclusters_, superclusters);
877	+	if (!superclusters.product()) cout << "ERROR: could not get superclusters input collection" << endl;
878	+	}
879
880		if (datasetType_ == "signalMC"){
881	<	if (find(objectsToGet.begin(), objectsToGet.end(), "stops") != objectsToGet.end())
881	>	if (find(objectsToGet.begin(), objectsToGet.end(), "stops") != objectsToGet.end()) {
882		event.getByLabel (stops_, stops);
883	+	if (!stops.product()) cout << "ERROR: could not get stops input collection" << endl;
884	+	}
885		}
886
887		if (useTrackCaloRhoCorr_) {
#	Line 653 \| Line 890 \| OSUAnalysis::analyze (const edm::Event &
890		// For description of rho values for different jet reconstruction algorithms, see
891		// https://twiki.cern.ch/twiki/bin/view/CMS/JetAlgorithms#Algorithms
892		event.getByLabel ("kt6CaloJets","rho", rhokt6CaloJetsHandle_);
893	+	if (!rhokt6CaloJetsHandle_.product()) cout << "ERROR: could not get kt6CaloJets input collection" << endl;
894		}
895
896		double masterScaleFactor = 1.0;
#	Line 660 \| Line 898 \| OSUAnalysis::analyze (const edm::Event &
898		//get pile-up event weight
899		if (doPileupReweighting_ && datasetType_ != "data") {
900		//for "data" datasets, the numTruePV is always set to -1
901	<	if (events->at(0).numTruePV < 0) cout << "WARNING[OSUAnalysis::analyze]: Event has numTruePV<0. Turning off pile-up reweighting." << endl;
902	<	else masterScaleFactor *= puWeight_->at (events->at (0).numTruePV);
901	>	if (events->at(0).numTruePV < 0 && isFirstEvent_) clog << "WARNING[OSUAnalysis::analyze]: Event has numTruePV<0. Turning off pile-up reweighting." << endl;
902	>	else masterScaleFactor *= puWeight_->at (events->at (0).numTruePV);
903		}
904
905		stopCTauScaleFactor_ = 1.0;
#	Line 671 \| Line 909 \| OSUAnalysis::analyze (const edm::Event &
909
910		//loop over all channels
911
912	+	auto_ptr<map<string, bool> > channelDecisions (new map<string, bool>);
913		for(uint currentChannelIndex = 0; currentChannelIndex != channels.size(); currentChannelIndex++){
914		channel currentChannel = channels.at(currentChannelIndex);
915	+	if (verbose_>1) clog << " Processing channel " << currentChannel.name << endl;
916
917		flagMap individualFlags;
918		counterMap passingCounter;
919		cumulativeFlags.clear ();
920
921	<	for (map<string, vector<float>>::iterator iter = BNTreeBranchVals_.begin();
922	<	iter != BNTreeBranchVals_.end(); iter++) {
921	>	for (map<string, vector<float>>::iterator iter = BNTreeBranchVals_.begin();
922	>	iter != BNTreeBranchVals_.end(); iter++) {
923		iter->second.clear(); // clear array
924		}
925
686	–
926		bool triggerDecision = true;
927		if(currentChannel.triggers.size() != 0 \|\| currentChannel.triggersToVeto.size() != 0){ //triggers specified
928		triggerDecision = evaluateTriggers(currentChannel.triggers, currentChannel.triggersToVeto, triggers.product());
#	Line 693 \| Line 932 \| OSUAnalysis::analyze (const edm::Event &
932		//loop over all cuts
933		for(uint currentCutIndex = 0; currentCutIndex != currentChannel.cuts.size(); currentCutIndex++){
934		cut currentCut = currentChannel.cuts.at(currentCutIndex);
935	<	for(uint currentObjectIndex = 0; currentObjectIndex != objectsToCut.size(); currentObjectIndex++){
936	<	string currentObject = objectsToCut.at(currentObjectIndex);
935	>	if (verbose_>2) clog << " Processing cut, index: " << currentCutIndex << ", input collection: " << currentCut.inputCollection << ", name: " << currentCut.name << endl;
936	>
937	>	for(uint currentObjectIndex = 0; currentObjectIndex != objectsToFlag.size(); currentObjectIndex++){
938	>	string currentObject = objectsToFlag.at(currentObjectIndex);
939
940		//initialize maps to get ready to set cuts
941	<	individualFlags[currentObject].push_back (vector<bool> ());
942	<	cumulativeFlags[currentObject].push_back (vector<bool> ());
941	>	individualFlags[currentObject].push_back (vector<pair<bool,bool> > ());
942	>	cumulativeFlags[currentObject].push_back (vector<pair<bool,bool> > ());
943
944		}
704	–	for(uint currentObjectIndex = 0; currentObjectIndex != objectsToCut.size(); currentObjectIndex++){
705	–	string currentObject = objectsToCut.at(currentObjectIndex);
706	–
707	–	int flagsForPairCutsIndex = max(int(currentCutIndex-1),0);
945
946	<
947	<	if (currentObject == "jets") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,jets.product(),"jets");
948	<	else if(currentObject == "secondary jets") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,jets.product(),"secondary jets");
949	<	else if(currentObject == "muons") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,muons.product(),"muons");
950	<	else if(currentObject == "secondary muons") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,muons.product(),"secondary muons");
946	>	//set flags for all relevant objects
947	>	for(int currentObjectIndex = -1; currentObjectIndex != int(objectsToFlag.size()); currentObjectIndex++){
948	>	string currentObject;
949	>	if (currentObjectIndex < 0) currentObject = currentCut.inputCollection; // In the first loop, set the flags for the collection that the cut is acting on. That way other paired collections can access the correct flag for the current cut.
950	>	else currentObject = objectsToFlag.at(currentObjectIndex);
951	>	if (currentObjectIndex >= 0 && currentObject == currentCut.inputCollection) continue; // Flags have already been set for the inputCollection object, so should not be set again.
952	>
953	>	// single object collections
954	>	if (currentObject == "jets") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,jets.product(),"jets");
955	>	else if(currentObject == "secondary jets") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,jets.product(),"secondary jets");
956	>	else if(currentObject == "secondary photons") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,photons.product(),"secondary photons");
957	>	else if(currentObject == "muons") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,muons.product(),"muons");
958	>	else if(currentObject == "secondary muons") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,secMuons.product(),"secondary muons");
959		else if(currentObject == "secondary electrons") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,electrons.product(),"secondary electrons");
960	<	else if(currentObject == "electrons") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,electrons.product(),"electrons");
961	<	else if(currentObject == "events") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,events.product(),"events");
962	<	else if(currentObject == "taus") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,taus.product(),"taus");
963	<	else if(currentObject == "mets") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,mets.product(),"mets");
964	<	else if(currentObject == "tracks") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,tracks.product(),"tracks");
965	<	else if(currentObject == "genjets") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,genjets.product(),"genjets");
966	<	else if(currentObject == "mcparticles") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,mcparticles.product(),"mcparticles");
967	<	else if(currentObject == "primaryvertexs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,primaryvertexs.product(),"primaryvertexs");
968	<	else if(currentObject == "bxlumis") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,bxlumis.product(),"bxlumis");
969	<	else if(currentObject == "photons") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,photons.product(),"photons");
970	<	else if(currentObject == "superclusters") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,superclusters.product(),"superclusters");
971	<	else if(currentObject == "trigobjs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,trigobjs.product(),"trigobjs");
972	<
973	<
974	<
975	<	else if(currentObject == "muon-muon pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,muons.product(),muons.product(), \
976	<	cumulativeFlags.at("muons").at(flagsForPairCutsIndex), \
977	<	cumulativeFlags.at("muons").at(flagsForPairCutsIndex), \
978	<	"muon-muon pairs");
979	<
980	<	else if(currentObject == "muon-secondary muon pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,muons.product(),muons.product(), \
981	<	cumulativeFlags.at("muons").at(flagsForPairCutsIndex), \
982	<	cumulativeFlags.at("secondary muons").at(flagsForPairCutsIndex), \
983	<	"muon-secondary muon pairs");
984	<
985	<	else if(currentObject == "electron-secondary electron pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,electrons.product(),electrons.product(), \
986	<	cumulativeFlags.at("electrons").at(flagsForPairCutsIndex), \
987	<	cumulativeFlags.at("secondary electrons").at(flagsForPairCutsIndex), \
988	<	"electron-secondary electron pairs");
989	<
990	<	else if(currentObject == "electron-electron pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,electrons.product(),electrons.product(), \
991	<	cumulativeFlags.at("electrons").at(flagsForPairCutsIndex), \
992	<	cumulativeFlags.at("electrons").at(flagsForPairCutsIndex), \
993	<	"electron-electron pairs");
994	<	else if(currentObject == "electron-muon pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,electrons.product(),muons.product(), \
995	<	cumulativeFlags.at("electrons").at(flagsForPairCutsIndex), \
996	<	cumulativeFlags.at("muons").at(flagsForPairCutsIndex), \
997	<	"electron-muon pairs");
998	<	else if(currentObject == "jet-jet pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,jets.product(),jets.product(), \
999	<	cumulativeFlags.at("jets").at(flagsForPairCutsIndex), \
1000	<	cumulativeFlags.at("jets").at(flagsForPairCutsIndex), \
1001	<	"jet-jet pairs");
1002	<	else if(currentObject == "electron-jet pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,electrons.product(),jets.product(), \
1003	<	cumulativeFlags.at("electrons").at(flagsForPairCutsIndex), \
1004	<	cumulativeFlags.at("jets").at(flagsForPairCutsIndex), \
1005	<	"electron-jet pairs");
761	<	else if(currentObject == "muon-jet pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,muons.product(),jets.product(), \
762	<	cumulativeFlags.at("muons").at(flagsForPairCutsIndex), \
763	<	cumulativeFlags.at("jets").at(flagsForPairCutsIndex), \
764	<	"muon-jet pairs");
765	<	else if(currentObject == "track-event pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,tracks.product(),events.product(),
766	<	cumulativeFlags.at("tracks").at(flagsForPairCutsIndex),
767	<	cumulativeFlags.at("events").at(flagsForPairCutsIndex),
768	<	"track-event pairs");
769	<	else if(currentObject == "electron-track pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,electrons.product(),tracks.product(),
770	<	cumulativeFlags.at("electrons").at(flagsForPairCutsIndex),
771	<	cumulativeFlags.at("tracks").at(flagsForPairCutsIndex),
772	<	"electron-track pairs");
773	<	else if(currentObject == "muon-track pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,muons.product(),tracks.product(),
774	<	cumulativeFlags.at("muons").at(flagsForPairCutsIndex),
775	<	cumulativeFlags.at("tracks").at(flagsForPairCutsIndex),
776	<	"muon-track pairs");
777	<	else if(currentObject == "muon-tau pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,muons.product(),taus.product(),
778	<	cumulativeFlags.at("muons").at(flagsForPairCutsIndex),
779	<	cumulativeFlags.at("taus").at(flagsForPairCutsIndex),
780	<	"muon-tau pairs");
781	<	else if(currentObject == "tau-tau pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,taus.product(),taus.product(),
782	<	cumulativeFlags.at("taus").at(flagsForPairCutsIndex),
783	<	cumulativeFlags.at("taus").at(flagsForPairCutsIndex),
784	<	"tau-tau pairs");
785	<	else if(currentObject == "tau-track pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,taus .product(),tracks.product(),
786	<	cumulativeFlags.at("taus").at(flagsForPairCutsIndex),
787	<	cumulativeFlags.at("tracks").at(flagsForPairCutsIndex),
788	<	"tau-track pairs");
789	<	else if(currentObject == "electron-trigobj pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,electrons.product(),trigobjs.product(),
790	<	cumulativeFlags.at("electrons").at(flagsForPairCutsIndex),
791	<	cumulativeFlags.at("trigobjs").at(flagsForPairCutsIndex),
792	<	"electron-trigobj pairs");
793	<	else if(currentObject == "muon-trigobj pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,muons.product(),trigobjs.product(),
794	<	cumulativeFlags.at("muons").at(flagsForPairCutsIndex),
795	<	cumulativeFlags.at("trigobjs").at(flagsForPairCutsIndex),
796	<	"muon-trigobj pairs");
960	>	else if(currentObject == "electrons") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,electrons.product(),"electrons");
961	>	else if(currentObject == "events") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,events.product(),"events");
962	>	else if(currentObject == "taus") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,taus.product(),"taus");
963	>	else if(currentObject == "mets") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,mets.product(),"mets");
964	>	else if(currentObject == "tracks") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,tracks.product(),"tracks");
965	>	else if(currentObject == "genjets") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,genjets.product(),"genjets");
966	>	else if(currentObject == "mcparticles") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,mcparticles.product(),"mcparticles");
967	>	else if(currentObject == "primaryvertexs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,primaryvertexs.product(),"primaryvertexs");
968	>	else if(currentObject == "bxlumis") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,bxlumis.product(),"bxlumis");
969	>	else if(currentObject == "photons") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,photons.product(),"photons");
970	>	else if(currentObject == "superclusters") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,superclusters.product(),"superclusters");
971	>	else if(currentObject == "trigobjs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,trigobjs.product(),"trigobjs");
972	>
973	>
974	>	// paired object collections
975	>	else if(currentObject == "muon-muon pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,muons.product(),muons.product(), "muon-muon pairs");
976	>	else if(currentObject == "muon-secondary muon pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,muons.product(),secMuons.product(), "muon-secondary muon pairs");
977	>
978	>	else if(currentObject == "muon-secondary photon pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,muons.product(),photons.product(), "muon-secondary photon pairs");
979	>	else if(currentObject == "muon-secondary jet pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,muons.product(),jets.product(), "muon-secondary jet pairs");
980	>	else if(currentObject == "photon-secondary jet pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,photons.product(),jets.product(), "photon-secondary jet pairs");
981	>	else if(currentObject == "electron-secondary jet pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,electrons.product(),jets.product(), "electron-secondary jet pairs");
982	>	else if(currentObject == "electron-secondary electron pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,electrons.product(),electrons.product(), "electron-secondary electron pairs");
983	>
984	>	else if(currentObject == "electron-electron pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,electrons.product(),electrons.product(), "electron-electron pairs");
985	>	else if(currentObject == "electron-muon pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,electrons.product(),muons.product(), "electron-muon pairs");
986	>	else if(currentObject == "jet-jet pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,jets.product(),jets.product(), "jet-jet pairs");
987	>	else if(currentObject == "jet-secondary jet pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,jets.product(),jets.product(), "jet-secondary jet pairs");
988	>	else if(currentObject == "electron-jet pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,electrons.product(),jets.product(), "electron-jet pairs");
989	>	else if(currentObject == "electron-photon pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,electrons.product(),photons.product(), "electron-photon pairs");
990	>	else if(currentObject == "photon-jet pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,photons.product(),jets.product(), "photon-jet pairs");
991	>	else if(currentObject == "muon-jet pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,muons.product(),jets.product(), "muon-jet pairs");
992	>	else if(currentObject == "muon-event pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,muons.product(),events.product(), "muon-event pairs");
993	>	else if(currentObject == "met-jet pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,mets.product(),jets.product(), "met-jet pairs");
994	>	else if(currentObject == "track-jet pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,tracks.product(),jets.product(), "track-jet pairs");
995	>	else if(currentObject == "muon-photon pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,muons.product(),photons.product(), "muon-photon pairs");
996	>	else if(currentObject == "track-event pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,tracks.product(),events.product(), "track-event pairs");
997	>	else if(currentObject == "electron-track pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,electrons.product(),tracks.product(),"electron-track pairs");
998	>	else if(currentObject == "muon-track pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,muons.product(),tracks.product(),"muon-track pairs");
999	>	else if(currentObject == "secondary muon-track pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,secMuons.product(),tracks.product(),"secondary muon-track pairs");
1000	>	else if(currentObject == "muon-tau pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,muons.product(),taus.product(),"muon-tau pairs");
1001	>	else if(currentObject == "tau-tau pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,taus.product(),taus.product(),"tau-tau pairs");
1002	>	else if(currentObject == "tau-track pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,taus .product(),tracks.product(),"tau-track pairs");
1003	>	else if(currentObject == "electron-trigobj pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,electrons.product(),trigobjs.product(),"electron-trigobj pairs");
1004	>	else if(currentObject == "muon-trigobj pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,muons.product(),trigobjs.product(),"muon-trigobj pairs");
1005	>	else if(currentObject == "electron-mcparticle pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,electrons.product(),mcparticles.product(),"electron-mcparticle pairs");
1006
1007		if(currentObject == "stops" && datasetType_ == "signalMC") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,stops.product(),"stops");
1008		}
1009
1010	+	}//end loop over all cuts
1011
1012
803	–	}//end loop over all cuts
804	–	//use cumulative flags to apply cuts at event level
1013
1014	+	//use cumulative flags to apply cuts at event level
1015	+	vector<bool> eventPassedPreviousCuts; //a vector to store cumulative cut descisions after each cut.
1016		bool eventPassedAllCuts = true;
1017	<	//a vector to store cumulative cut descisions after each cut.
808	<	vector<bool> eventPassedPreviousCuts;
809	<	//apply trigger (true if none were specified)
810	<	eventPassedAllCuts = eventPassedAllCuts && triggerDecision;
1017	>	eventPassedAllCuts = eventPassedAllCuts && triggerDecision; //apply trigger (true if none were specified)
1018
1019		for(uint currentCutIndex = 0; currentCutIndex != currentChannel.cuts.size(); currentCutIndex++){
1020
1021		//loop over all objects and count how many passed the cumulative selection up to this point
1022		cut currentCut = currentChannel.cuts.at(currentCutIndex);
1023		int numberPassing = 0;
1024	+	int numberPassingPrev = 0; // number of objects that pass cuts up to the previous one
1025
1026		for (uint object = 0; object != cumulativeFlags.at(currentCut.inputCollection).at(currentCutIndex).size() ; object++){
1027	<	if(cumulativeFlags.at(currentCut.inputCollection).at(currentCutIndex).at(object)) numberPassing++;
1027	>	if(cumulativeFlags.at(currentCut.inputCollection).at(currentCutIndex).at(object).first) numberPassing++;
1028	>	}
1029	>	bool cutDecision;
1030	>	if (!currentCut.isVeto) {
1031	>	cutDecision = evaluateComparison(numberPassing,currentCut.eventComparativeOperator,currentCut.numberRequired);
1032	>	} else {
1033	>	int prevCutIndex = currentCutIndex - 1;
1034	>	if (prevCutIndex<0) {
1035	>	numberPassingPrev = cumulativeFlags.at(currentCut.inputCollection).at(currentCutIndex).size(); // count all objects in collection if cut is the first
1036	>	} else {
1037	>	for (uint object = 0; object != cumulativeFlags.at(currentCut.inputCollection).at(prevCutIndex).size() ; object++){
1038	>	if (cumulativeFlags.at(currentCut.inputCollection).at(prevCutIndex).at(object).first) {
1039	>	numberPassingPrev++;
1040	>	if (verbose_>1) clog << " object passed previous cut" << endl;
1041	>	}
1042	>	}
1043	>	}
1044	>	int numberFailCut = numberPassingPrev - numberPassing;
1045	>	cutDecision = evaluateComparison(numberFailCut,currentCut.eventComparativeOperator,currentCut.numberRequired);
1046		}
1047	<	bool cutDecision = evaluateComparison(numberPassing,currentCut.eventComparativeOperator,currentCut.numberRequired);
1047	>
1048		cutFlows_.at(currentChannelIndex)->at (currentCut.name) = cutDecision;
1049		eventPassedAllCuts = eventPassedAllCuts && cutDecision;
1050		eventPassedPreviousCuts.push_back(eventPassedAllCuts);
1051	+	if (verbose_>1) clog << " Event passed cuts up to cut index " << currentCutIndex << endl;
1052	+
1053		}
1054	+	//applying all appropriate scale factors
1055		double scaleFactor = masterScaleFactor;
1056	+	muonScaleFactor_ = electronScaleFactor_ = bTagScaleFactor_ = 1.0;
1057
828	–	muonScaleFactor_ = electronScaleFactor_ = 1.0;
1058		if(applyLeptonSF_ && datasetType_ != "data"){
1059	<	if(cumulativeFlags.find ("muons") != cumulativeFlags.end ()){
1060	<	vector<bool> muonFlags;
1059	>	//only apply SFs if we've cut on this object
1060	>	if(find(objectsToCut.begin(),objectsToCut.end(),"muons") != objectsToCut.end ()){
1061	>	flagPair muonFlags;
1062	>	//get the last valid flags in the flag map
1063		for (int i = cumulativeFlags.at("muons").size() - 1; i >= 0; i--){
1064		if (cumulativeFlags.at("muons").at(i).size()){
1065		muonFlags = cumulativeFlags.at("muons").at(i);
1066		break;
1067		}
1068		}
1069	+	//apply the weight for each of those objects
1070		for (uint muonIndex = 0; muonIndex != muonFlags.size(); muonIndex++){
1071	<	if(!muonFlags.at(muonIndex)) continue;
1071	>	if(!muonFlags.at(muonIndex).second) continue;
1072		muonScaleFactor_ *= muonSFWeight_->at (muons->at(muonIndex).eta);
1073		}
1074		}
1075	<	if(cumulativeFlags.find ("electrons") != cumulativeFlags.end ()){
1076	<	vector<bool> electronFlags;
1075	>	//only apply SFs if we've cut on this object
1076	>	if(find(objectsToCut.begin(),objectsToCut.end(),"electrons") != objectsToCut.end ()){
1077	>	flagPair electronFlags;
1078	>	//get the last valid flags in the flag map
1079		for (int i = cumulativeFlags.at("electrons").size() - 1; i >= 0; i--){
1080		if (cumulativeFlags.at("electrons").at(i).size()){
1081		electronFlags = cumulativeFlags.at("electrons").at(i);
1082		break;
1083		}
1084		}
1085	+	//apply the weight for each of those objects
1086		for (uint electronIndex = 0; electronIndex != electronFlags.size(); electronIndex++){
1087	<	if(!electronFlags.at(electronIndex)) continue;
1087	>	if(!electronFlags.at(electronIndex).second) continue;
1088		electronScaleFactor_ *= electronSFWeight_->at (electrons->at(electronIndex).eta, electrons->at(electronIndex).pt);
1089		}
1090		}
1091		}
1092	+	if(applyBtagSF_ && datasetType_ != "data"){
1093	+	//only apply SFs if we've cut on this object
1094	+	if(find(objectsToCut.begin(),objectsToCut.end(),"jets") != objectsToCut.end ()){
1095	+	flagPair jetFlags;
1096	+	vector<double> jetSFs;
1097	+	//get the last valid flags in the flag map
1098	+	for (int i = cumulativeFlags.at("jets").size() - 1; i >= 0; i--){
1099	+	if (cumulativeFlags.at("jets").at(i).size()){
1100	+	jetFlags = cumulativeFlags.at("jets").at(i);
1101	+	break;
1102	+	}
1103	+	}
1104	+	//apply the weight for each of those objects
1105	+	for (uint jetIndex = 0; jetIndex != jetFlags.size(); jetIndex++){
1106	+	if(!jetFlags.at(jetIndex).second) continue;
1107	+	double jetSFTmp = bTagSFWeight_->sflookup(jets->at(jetIndex).btagCombinedSecVertex, jets->at(jetIndex).pt, jets->at(jetIndex).flavour, jets->at(jetIndex).eta);
1108	+	jetSFs.push_back(jetSFTmp);
1109	+	}
1110	+	bTagScaleFactor_ *= bTagSFWeight_->weight( jetSFs, minBtag_);
1111	+	}
1112	+	}
1113		scaleFactor *= muonScaleFactor_;
1114		scaleFactor *= electronScaleFactor_;
1115	<
1115	>	scaleFactor *= bTagScaleFactor_;
1116		cutFlows_.at(currentChannelIndex)->fillCutFlow(scaleFactor);
1117	+	if (verbose_>1) clog << " Scale factors applied: "
1118	+	<< " muonScaleFactor_ = " << muonScaleFactor_
1119	+	<< ", electronScaleFactor_ = " << electronScaleFactor_
1120	+	<< ", bTagScaleFactor_ = " << bTagScaleFactor_
1121	+	<< ", total scale factor = " << scaleFactor
1122	+	<< endl;
1123
1124	<	if (printEventInfo_) {
1124	>
1125	>	if (printEventInfo_ && eventPassedAllCuts) {
1126		// Write information about event to screen, for testing purposes.
1127	<	cout << "Event passed all cuts in channel " << currentChannel.name
1128	<	<< ": run=" << events->at(0).run
1129	<	<< " lumi=" << events->at(0).lumi
1130	<	<< " event=" << events->at(0).evt
1127	>	clog << "Event passed all cuts in channel " << currentChannel.name
1128	>	<< ": run:lumi:evt= " << events->at(0).run
1129	>	<< ":" << events->at(0).lumi
1130	>	<< ":" << events->at(0).evt
1131		<< endl;
1132	+	if (findEventsLog) {
1133	+	(*findEventsLog) << events->at(0).run
1134	+	<< ":" << events->at(0).lumi
1135	+	<< ":" << events->at(0).evt << endl;
1136	+	}
1137	+
1138		}
1139
1140
1141		//filling histograms
1142	<	for(uint currentCut = 0; currentCut != oneDHists_.at(currentChannelIndex).size(); currentCut++){//loop over all the directories in each channel.
1142	>	for(uint currentCut = 0; currentCut != oneDHists_.at(currentChannelIndex).size(); currentCut++){//loop over all the cuts in each channel; if GetPlotsAfterEachCut_ is false, only the last cut will be used.
1143	>
1144	>	if (verbose_>2) clog << " Filling histograms for currentcut = " << currentCut << endl;
1145	>
1146		uint currentDir;
1147	<	if(!GetPlotsAfterEachCut_){ currentDir = currentChannel.cuts.size() - oneDHists_.at(currentChannelIndex).size();}//if GetPlotsAfterEachCut_ is true, set currentDir point to the lat cut.
1147	>	if (!GetPlotsAfterEachCut_) { currentDir = currentChannel.cuts.size() - oneDHists_.at(currentChannelIndex).size(); } //if GetPlotsAfterEachCut_ is false, set currentDir point to the last cut.
1148		else{
1149	<	currentDir = currentCut;
1149	>	currentDir = currentCut;
1150		}
879	–	if(eventPassedPreviousCuts.at(currentDir)){
1151
1152	<	// Assign BNTree variables
1153	<	for (uint iBranch = 0; iBranch != treeBranches_.size(); iBranch++) {
883	<	BranchSpecs brSpecs = treeBranches_.at(iBranch);
884	<	string coll = brSpecs.inputCollection;
885	<	if (cumulativeFlags.count(coll) == 0) cout << "Error: no flags found for collection: " << coll << ", will cause a seg fault" << endl;
886	<
887	<	if (coll == "jets") assignTreeBranch(brSpecs,jets.product(), cumulativeFlags.at(coll).at(currentDir));
888	<	else if(coll == "secondary jets") assignTreeBranch(brSpecs,jets.product(), cumulativeFlags.at(coll).at(currentDir));
889	<	else if(coll == "muons") assignTreeBranch(brSpecs,muons.product(), cumulativeFlags.at(coll).at(currentDir));
890	<	else if(coll == "secondary muons") assignTreeBranch(brSpecs,muons.product(), cumulativeFlags.at(coll).at(currentDir));
891	<	else if(coll == "electrons") assignTreeBranch(brSpecs,electrons.product(), cumulativeFlags.at(coll).at(currentDir));
892	<	else if(coll == "secondary electrons") assignTreeBranch(brSpecs,electrons.product(), cumulativeFlags.at(coll).at(currentDir));
893	<	else if(coll == "events") assignTreeBranch(brSpecs,events.product(), cumulativeFlags.at(coll).at(currentDir));
894	<	else if(coll == "taus") assignTreeBranch(brSpecs,taus.product(), cumulativeFlags.at(coll).at(currentDir));
895	<	else if(coll == "mets") assignTreeBranch(brSpecs,mets.product(), cumulativeFlags.at(coll).at(currentDir));
896	<	else if(coll == "tracks") assignTreeBranch(brSpecs,tracks.product(), cumulativeFlags.at(coll).at(currentDir));
897	<	else if(coll == "genjets") assignTreeBranch(brSpecs,genjets.product(), cumulativeFlags.at(coll).at(currentDir));
898	<	else if(coll == "mcparticles") assignTreeBranch(brSpecs,mcparticles.product(), cumulativeFlags.at(coll).at(currentDir));
899	<	else if(coll == "primaryvertexs") assignTreeBranch(brSpecs,primaryvertexs.product(),cumulativeFlags.at(coll).at(currentDir));
900	<	else if(coll == "bxlumis") assignTreeBranch(brSpecs,bxlumis.product(), cumulativeFlags.at(coll).at(currentDir));
901	<	else if(coll == "photons") assignTreeBranch(brSpecs,photons.product(), cumulativeFlags.at(coll).at(currentDir));
902	<	else if(coll == "superclusters") assignTreeBranch(brSpecs,superclusters.product(), cumulativeFlags.at(coll).at(currentDir));
903	<	else if(coll == "trigobjs") assignTreeBranch(brSpecs,trigobjs.product(), cumulativeFlags.at(coll).at(currentDir));
904	<	else if(coll == "stops"
905	<	&& datasetType_ == "signalMC") assignTreeBranch(brSpecs,stops.product(), cumulativeFlags.at(coll).at(currentDir));
906	<	} // end loop over histograms
907	<
1152	>
1153	>	if(eventPassedPreviousCuts.at(currentDir)){
1154
1155		for (uint histogramIndex = 0; histogramIndex != histograms.size(); histogramIndex++){
1156		histogram currentHistogram = histograms.at(histogramIndex);
1157
1158	<	if (cumulativeFlags.count(currentHistogram.inputCollection) == 0) cout << "Error: no flags found for collection: " << currentHistogram.inputCollection << ", will cause a seg fault" << endl;
1158	>	if (cumulativeFlags.count(currentHistogram.inputCollection) == 0) clog << "Error: no flags found for collection: " << currentHistogram.inputCollection << ", will cause a seg fault" << endl;
1159	>
1160	>	if (verbose_>1) clog << " Filling histogram " << currentHistogram.name << " for collection " << currentHistogram.inputCollection << endl;
1161
1162	<	if(currentHistogram.inputVariables.size() == 1){
1163	<	TH1D* histo;
1164	<	histo = oneDHists_.at(currentChannelIndex).at(currentCut).at(currentHistogram.name);
1162	>	if(currentHistogram.inputVariables.size() == 1){
1163	>	TH1D* histo;
1164	>	histo = oneDHists_.at(currentChannelIndex).at(currentCut).at(currentHistogram.name);
1165		if (currentHistogram.inputCollection == "jets") fill1DHistogram(histo,currentHistogram,jets.product(),cumulativeFlags.at("jets").at(currentDir),scaleFactor);
1166	<	else if(currentHistogram.inputCollection == "secondary jets") fill1DHistogram(histo,currentHistogram,jets.product(),cumulativeFlags.at("secondary jets").at(currentDir),scaleFactor);
1167	<	else if(currentHistogram.inputCollection == "muons") fill1DHistogram(histo,currentHistogram,muons.product(),cumulativeFlags.at("muons").at(currentDir),scaleFactor);
1168	<	else if(currentHistogram.inputCollection == "secondary muons") fill1DHistogram(histo,currentHistogram,muons.product(),cumulativeFlags.at("secondary muons").at(currentDir),scaleFactor);
1169	<	else if(currentHistogram.inputCollection == "secondary electrons") fill1DHistogram(histo,currentHistogram,electrons.product(),cumulativeFlags.at("secondary electrons").at(currentDir),scaleFactor);
1170	<	else if(currentHistogram.inputCollection == "muon-muon pairs") fill1DHistogram(histo,currentHistogram,muons.product(),muons.product(), \
1171	<	cumulativeFlags.at("muons").at(currentDir),cumulativeFlags.at("muons").at(currentDir), \
1172	<	cumulativeFlags.at("muon-muon pairs").at(currentDir),scaleFactor);
1173	<	else if(currentHistogram.inputCollection == "muon-secondary muon pairs") fill1DHistogram(histo,currentHistogram,muons.product(),muons.product(), \
1174	<	cumulativeFlags.at("muons").at(currentDir),cumulativeFlags.at("secondary muons").at(currentDir), \
1175	<	cumulativeFlags.at("muon-secondary muon pairs").at(currentDir),scaleFactor);
1176	<	else if(currentHistogram.inputCollection == "electrons") fill1DHistogram(histo,currentHistogram,electrons.product(),cumulativeFlags.at("electrons").at(currentDir),scaleFactor);
1177	<	else if(currentHistogram.inputCollection == "electron-electron pairs") fill1DHistogram(histo,currentHistogram,electrons.product(),electrons.product(),\
1178	<	cumulativeFlags.at("electrons").at(currentDir),cumulativeFlags.at("electrons").at(currentDir),\
1179	<	cumulativeFlags.at("electron-electron pairs").at(currentDir),scaleFactor);
1180	<	else if(currentHistogram.inputCollection == "jet-jet pairs") fill1DHistogram(histo,currentHistogram,jets.product(),jets.product(),\
1181	<	cumulativeFlags.at("jets").at(currentDir),cumulativeFlags.at("jets").at(currentDir),\
1182	<	cumulativeFlags.at("jet-jet pairs").at(currentDir),scaleFactor);
1183	<	else if(currentHistogram.inputCollection == "electron-secondary electron pairs") fill1DHistogram(histo,currentHistogram,electrons.product(),electrons.product(), \
1184	<	cumulativeFlags.at("electrons").at(currentDir),cumulativeFlags.at("secondary electrons").at(currentDir), \
1185	<	cumulativeFlags.at("electron-secondary electron pairs").at(currentDir),scaleFactor);
1186	<	else if(currentHistogram.inputCollection == "electron-muon pairs") fill1DHistogram(histo,currentHistogram, electrons.product(),muons.product(), \
1187	<	cumulativeFlags.at("electrons").at(currentDir),cumulativeFlags.at("muons").at(currentDir),
1188	<	cumulativeFlags.at("electron-muon pairs").at(currentDir),scaleFactor);
1189	<	else if(currentHistogram.inputCollection == "electron-jet pairs") fill1DHistogram(histo,currentHistogram, electrons.product(),jets.product(), \
1190	<	cumulativeFlags.at("electrons").at(currentDir),cumulativeFlags.at("jets").at(currentDir),
1191	<	cumulativeFlags.at("electron-jet pairs").at(currentDir),scaleFactor);
1192	<	else if(currentHistogram.inputCollection == "muon-jet pairs") fill1DHistogram(histo,currentHistogram, muons.product(),jets.product(), \
1193	<	cumulativeFlags.at("muons").at(currentDir),cumulativeFlags.at("jets").at(currentDir),
1194	<	cumulativeFlags.at("muon-jet pairs").at(currentDir),scaleFactor);
1195	<	else if(currentHistogram.inputCollection == "electron-track pairs") fill1DHistogram(histo,currentHistogram, electrons.product(),tracks.product(),
1196	<	cumulativeFlags.at("electrons").at(currentDir),cumulativeFlags.at("tracks").at(currentDir),
1197	<	cumulativeFlags.at("electron-track pairs").at(currentDir),scaleFactor);
1198	<	else if(currentHistogram.inputCollection == "muon-track pairs") fill1DHistogram(histo,currentHistogram, muons.product(),tracks.product(),
1199	<	cumulativeFlags.at("muons").at(currentDir),cumulativeFlags.at("tracks").at(currentDir),
1200	<	cumulativeFlags.at("muon-track pairs").at(currentDir),scaleFactor);
1201	<	else if(currentHistogram.inputCollection == "muon-tau pairs") fill1DHistogram(histo,currentHistogram, muons.product(),taus.product(),
1202	<	cumulativeFlags.at("muons").at(currentDir),cumulativeFlags.at("taus").at(currentDir),
1203	<	cumulativeFlags.at("muon-tau pairs").at(currentDir),scaleFactor);
1204	<	else if(currentHistogram.inputCollection == "tau-tau pairs") fill1DHistogram(histo,currentHistogram, taus.product(),taus.product(),
1205	<	cumulativeFlags.at("taus").at(currentDir),cumulativeFlags.at("taus").at(currentDir),
1206	<	cumulativeFlags.at("tau-tau pairs").at(currentDir),scaleFactor);
1207	<	else if(currentHistogram.inputCollection == "tau-track pairs") fill1DHistogram(histo,currentHistogram, taus.product(),tracks.product(),
1208	<	cumulativeFlags.at("taus").at(currentDir),cumulativeFlags.at("tracks").at(currentDir),
1209	<	cumulativeFlags.at("tau-track pairs").at(currentDir),scaleFactor);
1210	<	else if(currentHistogram.inputCollection == "electron-trigobj pairs") fill1DHistogram(histo,currentHistogram, electrons.product(),trigobjs.product(),
1211	<	cumulativeFlags.at("electrons").at(currentDir),cumulativeFlags.at("trigobjs").at(currentDir),
1212	<	cumulativeFlags.at("electron-trigobj pairs").at(currentDir),scaleFactor);
1213	<	else if(currentHistogram.inputCollection == "muon-trigobj pairs") fill1DHistogram(histo,currentHistogram, muons.product(),trigobjs.product(),
1214	<	cumulativeFlags.at("muons").at(currentDir),cumulativeFlags.at("trigobjs").at(currentDir),
1215	<	cumulativeFlags.at("muon-trigobj pairs").at(currentDir),scaleFactor);
1216	<
1217	<	else if(currentHistogram.inputCollection == "events") fill1DHistogram(histo,currentHistogram,events.product(),cumulativeFlags.at("events").at(currentDir),scaleFactor);
1218	<	else if(currentHistogram.inputCollection == "taus") fill1DHistogram(histo,currentHistogram,taus.product(),cumulativeFlags.at("taus").at(currentDir),scaleFactor);
1219	<	else if(currentHistogram.inputCollection == "mets") fill1DHistogram(histo,currentHistogram,mets.product(),cumulativeFlags.at("mets").at(currentDir),scaleFactor);
1220	<	else if(currentHistogram.inputCollection == "tracks") fill1DHistogram(histo,currentHistogram,tracks.product(),cumulativeFlags.at("tracks").at(currentDir),scaleFactor);
1221	<	else if(currentHistogram.inputCollection == "genjets") fill1DHistogram(histo,currentHistogram,genjets.product(),cumulativeFlags.at("genjets").at(currentDir),scaleFactor);
1222	<	else if(currentHistogram.inputCollection == "mcparticles") fill1DHistogram(histo,currentHistogram,mcparticles.product(),cumulativeFlags.at("mcparticles").at(currentDir),scaleFactor);
1223	<	else if(currentHistogram.inputCollection == "primaryvertexs") fill1DHistogram(histo,currentHistogram,primaryvertexs.product(),cumulativeFlags.at("primaryvertexs").at(currentDir),scaleFactor);
1224	<	else if(currentHistogram.inputCollection == "bxlumis") fill1DHistogram(histo,currentHistogram,bxlumis.product(),cumulativeFlags.at("bxlumis").at(currentDir),scaleFactor);
1225	<	else if(currentHistogram.inputCollection == "photons") fill1DHistogram(histo,currentHistogram,photons.product(),cumulativeFlags.at("photons").at(currentDir),scaleFactor);
1226	<	else if(currentHistogram.inputCollection == "superclusters") fill1DHistogram(histo,currentHistogram,superclusters.product(),cumulativeFlags.at("superclusters").at(currentDir),scaleFactor);
1227	<	else if(currentHistogram.inputCollection == "trigobjs") fill1DHistogram(histo,currentHistogram,trigobjs.product(),cumulativeFlags.at("trigobjs").at(currentDir),scaleFactor);
1228	<	else if(currentHistogram.inputCollection == "stops" && datasetType_ == "signalMC") fill1DHistogram(histo,currentHistogram,stops.product(),cumulativeFlags.at("stops").at(currentDir),scaleFactor);
1229	<	}
1230	<	else if(currentHistogram.inputVariables.size() == 2){
1231	<	TH2D* histo;
1232	<	histo = twoDHists_.at(currentChannelIndex).at(currentCut).at(currentHistogram.name);
1233	<	if (currentHistogram.inputCollection == "jets") fill2DHistogram(histo,currentHistogram,jets.product(),cumulativeFlags.at("jets").at(currentDir),scaleFactor);
1234	<	else if(currentHistogram.inputCollection == "secondary jets") fill2DHistogram(histo,currentHistogram,jets.product(),cumulativeFlags.at("secondary jets").at(currentDir),scaleFactor);
1235	<	else if(currentHistogram.inputCollection == "muons") fill2DHistogram(histo,currentHistogram,muons.product(),cumulativeFlags.at("muons").at(currentDir),scaleFactor);
1236	<	else if(currentHistogram.inputCollection == "secondary muons") fill2DHistogram(histo,currentHistogram,muons.product(),cumulativeFlags.at("secondary muons").at(currentDir),scaleFactor);
1237	<	else if(currentHistogram.inputCollection == "muon-muon pairs") fill2DHistogram(histo,currentHistogram,muons.product(),muons.product(), \
1238	<	cumulativeFlags.at("muons").at(currentDir),cumulativeFlags.at("muons").at(currentDir), \
1239	<	cumulativeFlags.at("muon-muon pairs").at(currentDir),scaleFactor);
1240	<	else if(currentHistogram.inputCollection == "muon-secondary muon pairs") fill2DHistogram(histo,currentHistogram,muons.product(),muons.product(), \
1241	<	cumulativeFlags.at("muons").at(currentDir),cumulativeFlags.at("secondary muons").at(currentDir), \
1242	<	cumulativeFlags.at("muon-secondary muon pairs").at(currentDir),scaleFactor);
1243	<	else if(currentHistogram.inputCollection == "electrons") fill2DHistogram(histo,currentHistogram,electrons.product(),cumulativeFlags.at("electrons").at(currentDir),scaleFactor);
1244	<	else if(currentHistogram.inputCollection == "secondary electrons") fill2DHistogram(histo,currentHistogram,electrons.product(),cumulativeFlags.at("secondary electrons").at(currentDir),scaleFactor);
1245	<	else if(currentHistogram.inputCollection == "electron-electron pairs") fill2DHistogram(histo,currentHistogram,electrons.product(),electrons.product(), \
1246	<	cumulativeFlags.at("electrons").at(currentDir),cumulativeFlags.at("electrons").at(currentDir), \
1247	<	cumulativeFlags.at("electron-electron pairs").at(currentDir),scaleFactor);
1248	<	else if(currentHistogram.inputCollection == "jet-jet pairs") fill2DHistogram(histo,currentHistogram,jets.product(),jets.product(), \
1249	<	cumulativeFlags.at("jets").at(currentDir),cumulativeFlags.at("jets").at(currentDir), \
1250	<	cumulativeFlags.at("jet-jet pairs").at(currentDir),scaleFactor);
1251	<	else if(currentHistogram.inputCollection == "electron-secondary electron pairs") fill2DHistogram(histo,currentHistogram,electrons.product(),electrons.product(), \
1252	<	cumulativeFlags.at("electrons").at(currentDir),cumulativeFlags.at("secondary electrons").at(currentDir), \
1253	<	cumulativeFlags.at("electron-secondary electron pairs").at(currentDir),scaleFactor);
1254	<	else if(currentHistogram.inputCollection == "electron-muon pairs") fill2DHistogram(histo,currentHistogram,electrons.product(),muons.product(), \
1255	<	cumulativeFlags.at("electrons").at(currentDir),cumulativeFlags.at("muons").at(currentDir), \
1256	<	cumulativeFlags.at("electron-muon pairs").at(currentDir),scaleFactor);
1257	<	else if(currentHistogram.inputCollection == "electron-jet pairs") fill2DHistogram(histo,currentHistogram,electrons.product(),jets.product(), \
1258	<	cumulativeFlags.at("electrons").at(currentDir),cumulativeFlags.at("jets").at(currentDir), \
1259	<	cumulativeFlags.at("electron-jet pairs").at(currentDir),scaleFactor);
1260	<	else if(currentHistogram.inputCollection == "muon-jet pairs") fill2DHistogram(histo,currentHistogram,muons.product(),jets.product(), \
1261	<	cumulativeFlags.at("muons").at(currentDir),cumulativeFlags.at("jets").at(currentDir), \
1262	<	cumulativeFlags.at("muon-jet pairs").at(currentDir),scaleFactor);
1263	<	else if(currentHistogram.inputCollection == "electron-track pairs") fill2DHistogram(histo,currentHistogram,electrons.product(),tracks.product(),
1264	<	cumulativeFlags.at("electrons").at(currentDir),cumulativeFlags.at("tracks").at(currentDir),
1265	<	cumulativeFlags.at("electron-track pairs").at(currentDir),scaleFactor);
1266	<	else if(currentHistogram.inputCollection == "muon-track pairs") fill2DHistogram(histo,currentHistogram,muons.product(),tracks.product(),
1267	<	cumulativeFlags.at("muons").at(currentDir),cumulativeFlags.at("tracks").at(currentDir),
1268	<	cumulativeFlags.at("muon-track pairs").at(currentDir),scaleFactor);
1269	<	else if(currentHistogram.inputCollection == "muon-tau pairs") fill2DHistogram(histo,currentHistogram,muons.product(),taus.product(),
1270	<	cumulativeFlags.at("muons").at(currentDir),cumulativeFlags.at("taus").at(currentDir),
1271	<	cumulativeFlags.at("muon-tau pairs").at(currentDir),scaleFactor);
1272	<	else if(currentHistogram.inputCollection == "tau-tau pairs") fill2DHistogram(histo,currentHistogram,taus.product(),taus.product(),
1273	<	cumulativeFlags.at("taus").at(currentDir),cumulativeFlags.at("taus").at(currentDir),
1274	<	cumulativeFlags.at("tau-tau pairs").at(currentDir),scaleFactor);
1275	<	else if(currentHistogram.inputCollection == "tau-track pairs") fill2DHistogram(histo,currentHistogram,taus.product(),tracks.product(),
1276	<	cumulativeFlags.at("taus").at(currentDir),cumulativeFlags.at("tracks").at(currentDir),
1277	<	cumulativeFlags.at("tau-track pairs").at(currentDir),scaleFactor);
1278	<	else if(currentHistogram.inputCollection == "electron-trigobj pairs") fill2DHistogram(histo,currentHistogram,electrons.product(),trigobjs.product(),
1279	<	cumulativeFlags.at("electrons").at(currentDir),cumulativeFlags.at("trigobjs").at(currentDir),
1280	<	cumulativeFlags.at("electron-trigobj pairs").at(currentDir),scaleFactor);
1281	<	else if(currentHistogram.inputCollection == "muon-trigobj pairs") fill2DHistogram(histo,currentHistogram,muons.product(),trigobjs.product(),
1282	<	cumulativeFlags.at("muons").at(currentDir),cumulativeFlags.at("trigobjs").at(currentDir),
1283	<	cumulativeFlags.at("muon-trigobj pairs").at(currentDir),scaleFactor);
1284	<	else if(currentHistogram.inputCollection == "events") fill2DHistogram(histo,currentHistogram,events.product(),cumulativeFlags.at("events").at(currentDir),scaleFactor);
1285	<	else if(currentHistogram.inputCollection == "taus") fill2DHistogram(histo,currentHistogram,taus.product(),cumulativeFlags.at("taus").at(currentDir),scaleFactor);
1286	<	else if(currentHistogram.inputCollection == "mets") fill2DHistogram(histo,currentHistogram,mets.product(),cumulativeFlags.at("mets").at(currentDir),scaleFactor);
1287	<	else if(currentHistogram.inputCollection == "tracks") fill2DHistogram(histo,currentHistogram,tracks.product(),cumulativeFlags.at("tracks").at(currentDir),scaleFactor);
1288	<	else if(currentHistogram.inputCollection == "track-event pairs") fill2DHistogram(histo,currentHistogram,tracks.product(),events.product(),
1289	<	cumulativeFlags.at("tracks").at(currentDir),cumulativeFlags.at("events").at(currentDir),
1290	<	cumulativeFlags.at("track-event pairs").at(currentDir),scaleFactor);
1291	<	else if(currentHistogram.inputCollection == "genjets") fill2DHistogram(histo,currentHistogram,genjets.product(),cumulativeFlags.at("genjets").at(currentDir),scaleFactor);
1292	<	else if(currentHistogram.inputCollection == "mcparticles") fill2DHistogram(histo,currentHistogram,mcparticles.product(),cumulativeFlags.at("mcparticles").at(currentDir),scaleFactor);
1293	<	else if(currentHistogram.inputCollection == "primaryvertexs") fill2DHistogram(histo,currentHistogram,primaryvertexs.product(),cumulativeFlags.at("primaryvertexs").at(currentDir),scaleFactor);
1294	<	else if(currentHistogram.inputCollection == "bxlumis") fill2DHistogram(histo,currentHistogram,bxlumis.product(),cumulativeFlags.at("bxlumis").at(currentDir),scaleFactor);
1295	<	else if(currentHistogram.inputCollection == "photons") fill2DHistogram(histo,currentHistogram,photons.product(),cumulativeFlags.at("photons").at(currentDir),scaleFactor);
1296	<	else if(currentHistogram.inputCollection == "superclusters") fill2DHistogram(histo,currentHistogram,superclusters.product(),cumulativeFlags.at("superclusters").at(currentDir),scaleFactor);
1297	<	else if(currentHistogram.inputCollection == "trigobjs") fill2DHistogram(histo,currentHistogram,trigobjs.product(),cumulativeFlags.at("trigobjs").at(currentDir),scaleFactor);
1298	<	else if(currentHistogram.inputCollection == "stops" && datasetType_ == "signalMC") fill2DHistogram(histo,currentHistogram,stops.product(),cumulativeFlags.at("stops").at(currentDir),scaleFactor);
1299	<	}
1300	<
1301	<	}
1166	>	else if(currentHistogram.inputCollection == "secondary jets") fill1DHistogram(histo,currentHistogram,jets.product(),cumulativeFlags.at("secondary jets").at(currentDir),scaleFactor);
1167	>	else if(currentHistogram.inputCollection == "secondary photons") fill1DHistogram(histo,currentHistogram,photons.product(),cumulativeFlags.at("secondary photons").at(currentDir),scaleFactor);
1168	>	else if(currentHistogram.inputCollection == "muons") fill1DHistogram(histo,currentHistogram,muons.product(),cumulativeFlags.at("muons").at(currentDir),scaleFactor);
1169	>	else if(currentHistogram.inputCollection == "secondary muons") fill1DHistogram(histo,currentHistogram,secMuons.product(),cumulativeFlags.at("secondary muons").at(currentDir),scaleFactor);
1170	>	else if(currentHistogram.inputCollection == "secondary electrons") fill1DHistogram(histo,currentHistogram,electrons.product(),cumulativeFlags.at("secondary electrons").at(currentDir),scaleFactor);
1171	>	else if(currentHistogram.inputCollection == "muon-muon pairs") fill1DHistogram(histo,currentHistogram,muons.product(),muons.product(),
1172	>	cumulativeFlags.at("muon-muon pairs").at(currentDir),scaleFactor);
1173	>	else if(currentHistogram.inputCollection == "muon-secondary muon pairs") fill1DHistogram(histo,currentHistogram,muons.product(),secMuons.product(),
1174	>	cumulativeFlags.at("muon-secondary muon pairs").at(currentDir),scaleFactor);
1175	>	else if(currentHistogram.inputCollection == "muon-secondary photon pairs") fill1DHistogram(histo,currentHistogram,muons.product(),photons.product(),
1176	>	cumulativeFlags.at("muon-secondary photon pairs").at(currentDir),scaleFactor);
1177	>	else if(currentHistogram.inputCollection == "muon-secondary jet pairs") fill1DHistogram(histo,currentHistogram,muons.product(),jets.product(),
1178	>	cumulativeFlags.at("muon-secondary jet pairs").at(currentDir),scaleFactor);
1179	>	else if(currentHistogram.inputCollection == "photon-secondary jet pairs") fill1DHistogram(histo,currentHistogram,photons.product(),jets.product(),
1180	>	cumulativeFlags.at("photon-secondary jet pairs").at(currentDir),scaleFactor);
1181	>	else if(currentHistogram.inputCollection == "electron-secondary jet pairs") fill1DHistogram(histo,currentHistogram,electrons.product(),jets.product(),
1182	>	cumulativeFlags.at("electron-secondary jet pairs").at(currentDir),scaleFactor);
1183	>
1184	>	else if(currentHistogram.inputCollection == "electrons") fill1DHistogram(histo,currentHistogram,electrons.product(),cumulativeFlags.at("electrons").at(currentDir),scaleFactor);
1185	>	else if(currentHistogram.inputCollection == "electron-electron pairs") fill1DHistogram(histo,currentHistogram,electrons.product(),electrons.product(),
1186	>	cumulativeFlags.at("electron-electron pairs").at(currentDir),scaleFactor);
1187	>	else if(currentHistogram.inputCollection == "jet-jet pairs") fill1DHistogram(histo,currentHistogram,jets.product(),jets.product(),
1188	>	cumulativeFlags.at("jet-jet pairs").at(currentDir),scaleFactor);
1189	>	else if(currentHistogram.inputCollection == "jet-secondary jet pairs") fill1DHistogram(histo,currentHistogram,jets.product(),jets.product(),
1190	>	cumulativeFlags.at("jet-secondary jet pairs").at(currentDir),scaleFactor);
1191	>
1192	>	else if(currentHistogram.inputCollection == "electron-secondary electron pairs") fill1DHistogram(histo,currentHistogram,electrons.product(),electrons.product(),
1193	>	cumulativeFlags.at("electron-secondary electron pairs").at(currentDir),scaleFactor);
1194	>	else if(currentHistogram.inputCollection == "electron-muon pairs") fill1DHistogram(histo,currentHistogram, electrons.product(),muons.product(),
1195	>	cumulativeFlags.at("electron-muon pairs").at(currentDir),scaleFactor);
1196	>	else if(currentHistogram.inputCollection == "electron-jet pairs") fill1DHistogram(histo,currentHistogram, electrons.product(),jets.product(),
1197	>	cumulativeFlags.at("electron-jet pairs").at(currentDir),scaleFactor);
1198	>	else if(currentHistogram.inputCollection == "photon-jet pairs") fill1DHistogram(histo,currentHistogram, photons.product(),jets.product(),
1199	>	cumulativeFlags.at("photon-jet pairs").at(currentDir),scaleFactor);
1200	>	else if(currentHistogram.inputCollection == "muon-jet pairs") fill1DHistogram(histo,currentHistogram, muons.product(),jets.product(),
1201	>	cumulativeFlags.at("muon-jet pairs").at(currentDir),scaleFactor);
1202	>	else if(currentHistogram.inputCollection == "muon-event pairs") fill1DHistogram(histo,currentHistogram, muons.product(),events.product(),
1203	>	cumulativeFlags.at("muon-event pairs").at(currentDir),scaleFactor);
1204	>	else if(currentHistogram.inputCollection == "met-jet pairs") fill1DHistogram(histo,currentHistogram, mets.product(),jets.product(),
1205	>	cumulativeFlags.at("met-jet pairs").at(currentDir),scaleFactor);
1206	>	else if(currentHistogram.inputCollection == "track-jet pairs") fill1DHistogram(histo,currentHistogram,tracks.product(),jets.product(),
1207	>	cumulativeFlags.at("track-jet pairs").at(currentDir),scaleFactor);
1208	>	else if(currentHistogram.inputCollection == "muon-photon pairs") fill1DHistogram(histo,currentHistogram, muons.product(),photons.product(),
1209	>	cumulativeFlags.at("muon-photon pairs").at(currentDir),scaleFactor);
1210	>	else if(currentHistogram.inputCollection == "electron-photon pairs") fill1DHistogram(histo,currentHistogram, electrons.product(),photons.product(),
1211	>	cumulativeFlags.at("electron-photon pairs").at(currentDir),scaleFactor);
1212	>	else if(currentHistogram.inputCollection == "electron-track pairs") fill1DHistogram(histo,currentHistogram, electrons.product(),tracks.product(),
1213	>	cumulativeFlags.at("electron-track pairs").at(currentDir),scaleFactor);
1214	>	else if(currentHistogram.inputCollection == "muon-track pairs") fill1DHistogram(histo,currentHistogram, muons.product(),tracks.product(),
1215	>	cumulativeFlags.at("muon-track pairs").at(currentDir),scaleFactor);
1216	>	else if(currentHistogram.inputCollection == "secondary muon-track pairs") fill1DHistogram(histo,currentHistogram, secMuons.product(),tracks.product(),
1217	>	cumulativeFlags.at("secondary muon-track pairs").at(currentDir),scaleFactor);
1218	>	else if(currentHistogram.inputCollection == "muon-tau pairs") fill1DHistogram(histo,currentHistogram, muons.product(),taus.product(),
1219	>	cumulativeFlags.at("muon-tau pairs").at(currentDir),scaleFactor);
1220	>	else if(currentHistogram.inputCollection == "tau-tau pairs") fill1DHistogram(histo,currentHistogram, taus.product(),taus.product(),
1221	>	cumulativeFlags.at("tau-tau pairs").at(currentDir),scaleFactor);
1222	>	else if(currentHistogram.inputCollection == "tau-track pairs") fill1DHistogram(histo,currentHistogram, taus.product(),tracks.product(),
1223	>	cumulativeFlags.at("tau-track pairs").at(currentDir),scaleFactor);
1224	>	else if(currentHistogram.inputCollection == "electron-trigobj pairs") fill1DHistogram(histo,currentHistogram, electrons.product(),trigobjs.product(),
1225	>	cumulativeFlags.at("electron-trigobj pairs").at(currentDir),scaleFactor);
1226	>	else if(currentHistogram.inputCollection == "muon-trigobj pairs") fill1DHistogram(histo,currentHistogram, muons.product(),trigobjs.product(),
1227	>	cumulativeFlags.at("muon-trigobj pairs").at(currentDir),scaleFactor);
1228	>
1229	>	else if(currentHistogram.inputCollection == "events") fill1DHistogram(histo,currentHistogram,events.product(),cumulativeFlags.at("events").at(currentDir),scaleFactor);
1230	>	else if(currentHistogram.inputCollection == "taus") fill1DHistogram(histo,currentHistogram,taus.product(),cumulativeFlags.at("taus").at(currentDir),scaleFactor);
1231	>	else if(currentHistogram.inputCollection == "mets") fill1DHistogram(histo,currentHistogram,mets.product(),cumulativeFlags.at("mets").at(currentDir),scaleFactor);
1232	>	else if(currentHistogram.inputCollection == "tracks") fill1DHistogram(histo,currentHistogram,tracks.product(),cumulativeFlags.at("tracks").at(currentDir),scaleFactor);
1233	>	else if(currentHistogram.inputCollection == "genjets") fill1DHistogram(histo,currentHistogram,genjets.product(),cumulativeFlags.at("genjets").at(currentDir),scaleFactor);
1234	>	else if(currentHistogram.inputCollection == "mcparticles") fill1DHistogram(histo,currentHistogram,mcparticles.product(),cumulativeFlags.at("mcparticles").at(currentDir),scaleFactor);
1235	>	else if(currentHistogram.inputCollection == "primaryvertexs") fill1DHistogram(histo,currentHistogram,primaryvertexs.product(),cumulativeFlags.at("primaryvertexs").at(currentDir),scaleFactor);
1236	>	else if(currentHistogram.inputCollection == "bxlumis") fill1DHistogram(histo,currentHistogram,bxlumis.product(),cumulativeFlags.at("bxlumis").at(currentDir),scaleFactor);
1237	>	else if(currentHistogram.inputCollection == "photons") fill1DHistogram(histo,currentHistogram,photons.product(),cumulativeFlags.at("photons").at(currentDir),scaleFactor);
1238	>	else if(currentHistogram.inputCollection == "superclusters") fill1DHistogram(histo,currentHistogram,superclusters.product(),cumulativeFlags.at("superclusters").at(currentDir),scaleFactor);
1239	>	else if(currentHistogram.inputCollection == "trigobjs") fill1DHistogram(histo,currentHistogram,trigobjs.product(),cumulativeFlags.at("trigobjs").at(currentDir),scaleFactor);
1240	>	else if(currentHistogram.inputCollection == "stops" && datasetType_ == "signalMC") fill1DHistogram(histo,currentHistogram,stops.product(),cumulativeFlags.at("stops").at(currentDir),scaleFactor);
1241	>	}
1242	>	else if(currentHistogram.inputVariables.size() == 2){
1243	>	TH2D* histo;
1244	>	histo = twoDHists_.at(currentChannelIndex).at(currentCut).at(currentHistogram.name);
1245	>	if (currentHistogram.inputCollection == "jets") fill2DHistogram(histo,currentHistogram,jets.product(),cumulativeFlags.at("jets").at(currentDir),scaleFactor);
1246	>	else if(currentHistogram.inputCollection == "secondary jets") fill2DHistogram(histo,currentHistogram,jets.product(),cumulativeFlags.at("secondary jets").at(currentDir),scaleFactor);
1247	>	else if(currentHistogram.inputCollection == "secondary photons") fill2DHistogram(histo,currentHistogram,photons.product(),cumulativeFlags.at("secondary photons").at(currentDir),scaleFactor);
1248	>	else if(currentHistogram.inputCollection == "muons") fill2DHistogram(histo,currentHistogram,muons.product(),cumulativeFlags.at("muons").at(currentDir),scaleFactor);
1249	>	else if(currentHistogram.inputCollection == "secondary muons") fill2DHistogram(histo,currentHistogram,secMuons.product(),cumulativeFlags.at("secondary muons").at(currentDir),scaleFactor);
1250	>	else if(currentHistogram.inputCollection == "muon-muon pairs") fill2DHistogram(histo,currentHistogram,muons.product(),muons.product(),
1251	>	cumulativeFlags.at("muon-muon pairs").at(currentDir),scaleFactor);
1252	>	else if(currentHistogram.inputCollection == "muon-secondary muon pairs") fill2DHistogram(histo,currentHistogram,muons.product(),secMuons.product(),
1253	>	cumulativeFlags.at("muon-secondary muon pairs").at(currentDir),scaleFactor);
1254	>	else if(currentHistogram.inputCollection == "muon-secondary photon pairs") fill2DHistogram(histo,currentHistogram,muons.product(),photons.product(),
1255	>	cumulativeFlags.at("muon-secondary photon pairs").at(currentDir),scaleFactor);
1256	>	else if(currentHistogram.inputCollection == "muon-secondary jet pairs") fill2DHistogram(histo,currentHistogram,muons.product(),jets.product(),
1257	>	cumulativeFlags.at("muon-secondary jet pairs").at(currentDir),scaleFactor);
1258	>	else if(currentHistogram.inputCollection == "electron-secondary jet pairs") fill2DHistogram(histo,currentHistogram,electrons.product(),jets.product(),
1259	>	cumulativeFlags.at("electron-secondary jet pairs").at(currentDir),scaleFactor);
1260	>	else if(currentHistogram.inputCollection == "photon-secondary jet pairs") fill2DHistogram(histo,currentHistogram,photons.product(),jets.product(),
1261	>	cumulativeFlags.at("photon-secondary jet pairs").at(currentDir),scaleFactor);
1262	>	else if(currentHistogram.inputCollection == "electrons") fill2DHistogram(histo,currentHistogram,electrons.product(),cumulativeFlags.at("electrons").at(currentDir),scaleFactor);
1263	>	else if(currentHistogram.inputCollection == "secondary electrons") fill2DHistogram(histo,currentHistogram,electrons.product(),cumulativeFlags.at("secondary electrons").at(currentDir),scaleFactor);
1264	>	else if(currentHistogram.inputCollection == "electron-electron pairs") fill2DHistogram(histo,currentHistogram,electrons.product(),electrons.product(),
1265	>	cumulativeFlags.at("electron-electron pairs").at(currentDir),scaleFactor);
1266	>	else if(currentHistogram.inputCollection == "jet-jet pairs") fill2DHistogram(histo,currentHistogram,jets.product(),jets.product(),
1267	>	cumulativeFlags.at("jet-jet pairs").at(currentDir),scaleFactor);
1268	>	else if(currentHistogram.inputCollection == "electron-secondary electron pairs") fill2DHistogram(histo,currentHistogram,electrons.product(),electrons.product(),
1269	>	cumulativeFlags.at("electron-secondary electron pairs").at(currentDir),scaleFactor);
1270	>	else if(currentHistogram.inputCollection == "electron-muon pairs") fill2DHistogram(histo,currentHistogram,electrons.product(),muons.product(),
1271	>	cumulativeFlags.at("electron-muon pairs").at(currentDir),scaleFactor);
1272	>	else if(currentHistogram.inputCollection == "electron-jet pairs") fill2DHistogram(histo,currentHistogram,electrons.product(),jets.product(),
1273	>	cumulativeFlags.at("electron-jet pairs").at(currentDir),scaleFactor);
1274	>	else if(currentHistogram.inputCollection == "electron-photon pairs") fill2DHistogram(histo,currentHistogram,electrons.product(),photons.product(),
1275	>	cumulativeFlags.at("electron-photon pairs").at(currentDir),scaleFactor);
1276	>	else if(currentHistogram.inputCollection == "muon-jet pairs") fill2DHistogram(histo,currentHistogram,muons.product(),jets.product(),
1277	>	cumulativeFlags.at("muon-jet pairs").at(currentDir),scaleFactor);
1278	>	else if(currentHistogram.inputCollection == "muon-event pairs") fill2DHistogram(histo,currentHistogram,muons.product(),events.product(),
1279	>	cumulativeFlags.at("muon-event pairs").at(currentDir),scaleFactor);
1280	>	else if(currentHistogram.inputCollection == "met-jet pairs") fill2DHistogram(histo,currentHistogram,mets.product(),jets.product(),
1281	>	cumulativeFlags.at("met-jet pairs").at(currentDir),scaleFactor);
1282	>	else if(currentHistogram.inputCollection == "track-jet pairs") fill2DHistogram(histo,currentHistogram,tracks.product(),jets.product(),
1283	>	cumulativeFlags.at("track-jet pairs").at(currentDir),scaleFactor);
1284	>	else if(currentHistogram.inputCollection == "photon-jet pairs") fill2DHistogram(histo,currentHistogram,photons.product(),jets.product(),
1285	>	cumulativeFlags.at("photon-jet pairs").at(currentDir),scaleFactor);
1286	>	else if(currentHistogram.inputCollection == "muon-photon pairs") fill2DHistogram(histo,currentHistogram,muons.product(),photons.product(),
1287	>	cumulativeFlags.at("muon-photon pairs").at(currentDir),scaleFactor);
1288	>	else if(currentHistogram.inputCollection == "electron-track pairs") fill2DHistogram(histo,currentHistogram,electrons.product(),tracks.product(),
1289	>	cumulativeFlags.at("electron-track pairs").at(currentDir),scaleFactor);
1290	>	else if(currentHistogram.inputCollection == "muon-track pairs") fill2DHistogram(histo,currentHistogram,muons.product(),tracks.product(),
1291	>	cumulativeFlags.at("muon-track pairs").at(currentDir),scaleFactor);
1292	>	else if(currentHistogram.inputCollection == "secondary muon-track pairs") fill2DHistogram(histo,currentHistogram,secMuons.product(),tracks.product(),
1293	>	cumulativeFlags.at("muon-track pairs").at(currentDir),scaleFactor);
1294	>	else if(currentHistogram.inputCollection == "muon-tau pairs") fill2DHistogram(histo,currentHistogram,muons.product(),taus.product(),
1295	>	cumulativeFlags.at("muon-tau pairs").at(currentDir),scaleFactor);
1296	>	else if(currentHistogram.inputCollection == "tau-tau pairs") fill2DHistogram(histo,currentHistogram,taus.product(),taus.product(),
1297	>	cumulativeFlags.at("tau-tau pairs").at(currentDir),scaleFactor);
1298	>	else if(currentHistogram.inputCollection == "tau-track pairs") fill2DHistogram(histo,currentHistogram,taus.product(),tracks.product(),
1299	>	cumulativeFlags.at("tau-track pairs").at(currentDir),scaleFactor);
1300	>	else if(currentHistogram.inputCollection == "electron-trigobj pairs") fill2DHistogram(histo,currentHistogram,electrons.product(),trigobjs.product(),
1301	>	cumulativeFlags.at("electron-trigobj pairs").at(currentDir),scaleFactor);
1302	>	else if(currentHistogram.inputCollection == "muon-trigobj pairs") fill2DHistogram(histo,currentHistogram,muons.product(),trigobjs.product(),
1303	>	cumulativeFlags.at("muon-trigobj pairs").at(currentDir),scaleFactor);
1304	>	else if(currentHistogram.inputCollection == "events") fill2DHistogram(histo,currentHistogram,events.product(),cumulativeFlags.at("events").at(currentDir),scaleFactor);
1305	>	else if(currentHistogram.inputCollection == "taus") fill2DHistogram(histo,currentHistogram,taus.product(),cumulativeFlags.at("taus").at(currentDir),scaleFactor);
1306	>	else if(currentHistogram.inputCollection == "mets") fill2DHistogram(histo,currentHistogram,mets.product(),cumulativeFlags.at("mets").at(currentDir),scaleFactor);
1307	>	else if(currentHistogram.inputCollection == "tracks") fill2DHistogram(histo,currentHistogram,tracks.product(),cumulativeFlags.at("tracks").at(currentDir),scaleFactor);
1308	>	else if(currentHistogram.inputCollection == "track-event pairs") fill2DHistogram(histo,currentHistogram,tracks.product(),events.product(),
1309	>	cumulativeFlags.at("track-event pairs").at(currentDir),scaleFactor);
1310	>	else if(currentHistogram.inputCollection == "genjets") fill2DHistogram(histo,currentHistogram,genjets.product(),cumulativeFlags.at("genjets").at(currentDir),scaleFactor);
1311	>	else if(currentHistogram.inputCollection == "mcparticles") fill2DHistogram(histo,currentHistogram,mcparticles.product(),cumulativeFlags.at("mcparticles").at(currentDir),scaleFactor);
1312	>	else if(currentHistogram.inputCollection == "primaryvertexs") fill2DHistogram(histo,currentHistogram,primaryvertexs.product(),cumulativeFlags.at("primaryvertexs").at(currentDir),scaleFactor);
1313	>	else if(currentHistogram.inputCollection == "bxlumis") fill2DHistogram(histo,currentHistogram,bxlumis.product(),cumulativeFlags.at("bxlumis").at(currentDir),scaleFactor);
1314	>	else if(currentHistogram.inputCollection == "photons") fill2DHistogram(histo,currentHistogram,photons.product(),cumulativeFlags.at("photons").at(currentDir),scaleFactor);
1315	>	else if(currentHistogram.inputCollection == "superclusters") fill2DHistogram(histo,currentHistogram,superclusters.product(),cumulativeFlags.at("superclusters").at(currentDir),scaleFactor);
1316	>	else if(currentHistogram.inputCollection == "trigobjs") fill2DHistogram(histo,currentHistogram,trigobjs.product(),cumulativeFlags.at("trigobjs").at(currentDir),scaleFactor);
1317	>	else if(currentHistogram.inputCollection == "stops" && datasetType_ == "signalMC") fill2DHistogram(histo,currentHistogram,stops.product(),cumulativeFlags.at("stops").at(currentDir),scaleFactor);
1318	>	}
1319
1320	+	}
1321
1056	–	//fills histograms with the sizes of collections
1057	–	for (uint currentObjectIndex = 0; currentObjectIndex != objectsToPlot.size(); currentObjectIndex++){
1322
1323	<	string currentObject = objectsToPlot.at(currentObjectIndex);
1324	<	string objectToPlot = "";
1323	>	//fills histograms with the sizes of collections
1324	>	for (uint currentObjectIndex = 0; currentObjectIndex != objectsToPlot.size(); currentObjectIndex++){
1325
1326	<	// Name of objectToPlot here must match the name specified in OSUAnalysis::OSUAnalysis().
1327	<	if(currentObject == "muon-muon pairs") objectToPlot = "dimuonPairs";
1328	<	else if(currentObject == "electron-electron pairs") objectToPlot = "dielectronPairs";
1329	<	else if(currentObject == "electron-muon pairs") objectToPlot = "electronMuonPairs";
1330	<	else if(currentObject == "electron-jet pairs") objectToPlot = "electronJetPairs";
1331	<	else if(currentObject == "muon-jet pairs") objectToPlot = "muonJetPairs";
1332	<	else if(currentObject == "jet-jet pairs") objectToPlot = "dijetPairs";
1333	<	else if(currentObject == "secondary jets") objectToPlot = "secondaryJets";
1334	<	else if(currentObject == "electron-track pairs") objectToPlot = "electronTrackPairs";
1335	<	else if(currentObject == "muon-track pairs") objectToPlot = "muonTrackPairs";
1336	<	else if(currentObject == "muon-tau pairs") objectToPlot = "muonTauPairs";
1337	<	else if(currentObject == "tau-tau pairs") objectToPlot = "ditauPairs";
1338	<	else if(currentObject == "tau-track pairs") objectToPlot = "tauTrackPairs";
1339	<	else if(currentObject == "track-event pairs") objectToPlot = "trackEventPairs";
1340	<	else if(currentObject == "muon-secondary muon pairs") objectToPlot = "muonSecondaryMuonPairs";
1341	<	else if(currentObject == "secondary muons") objectToPlot = "secondaryMuons";
1342	<	else if(currentObject == "electron-secondary electron pairs") objectToPlot = "electronSecondaryElectronPairs";
1343	<	else if(currentObject == "secondary electrons") objectToPlot = "secondaryElectrons";
1344	<	else if(currentObject == "electron-trigobj pairs") objectToPlot = "electronTrigobjPairs";
1345	<	else if(currentObject == "muon-trigobj pairs") objectToPlot = "muonTrigobjPairs";
1346	<	else objectToPlot = currentObject;
1347	<
1348	<	string tempCurrentObject = objectToPlot;
1349	<	tempCurrentObject.at(0) = toupper(tempCurrentObject.at(0));
1350	<	string histoName = "num" + tempCurrentObject;
1351	<
1352	<	//set position of primary vertex in event, in order to calculate quantities relative to it
1353	<	if(find(objectsToCut.begin(), objectsToCut.end(), currentObject) != objectsToCut.end()) {
1354	<	vector<bool> lastCutFlags = cumulativeFlags.at(currentObject).at(currentDir);
1355	<	int numToPlot = 0;
1356	<	for (uint currentFlag = 0; currentFlag != lastCutFlags.size(); currentFlag++){
1357	<	if(lastCutFlags.at(currentFlag)) numToPlot++;
1358	<	}
1359	<	if(objectToPlot == "primaryvertexs"){
1360	<	oneDHists_.at(currentChannelIndex).at(currentCut).at(histoName+"BeforePileupCorrection")->Fill(primaryvertexs->size());
1361	<	oneDHists_.at(currentChannelIndex).at(currentCut).at(histoName+"AfterPileupCorrection")->Fill(primaryvertexs->size(),scaleFactor);
1362	<	}
1363	<	else {
1364	<	oneDHists_.at(currentChannelIndex).at(currentCut).at(histoName)->Fill(numToPlot,scaleFactor);
1365	<	}
1366	<	}
1367	<	} // end for (uint currentObjectIndex = 0; currentObjectIndex != objectsToPlot.size(); currentObjectIndex++)
1368	<	} // end if(eventPassedPreviousCuts.at(currentDir)){
1369	<	} // end loop over cuts
1326	>	string currentObject = objectsToPlot.at(currentObjectIndex);
1327	>	string objectToPlot = "";
1328	>
1329	>	if (verbose_) clog << "Filling histogram of number of selected objects in collection: " << currentObject << endl;
1330	>
1331	>	// Name of objectToPlot here must match the name specified in OSUAnalysis::OSUAnalysis().
1332	>	if(currentObject == "muon-muon pairs") objectToPlot = "dimuonPairs";
1333	>	else if(currentObject == "electron-electron pairs") objectToPlot = "dielectronPairs";
1334	>	else if(currentObject == "electron-muon pairs") objectToPlot = "electronMuonPairs";
1335	>	else if(currentObject == "electron-photon pairs") objectToPlot = "electronPhotonPairs";
1336	>	else if(currentObject == "electron-jet pairs") objectToPlot = "electronJetPairs";
1337	>	else if(currentObject == "muon-jet pairs") objectToPlot = "muonJetPairs";
1338	>	else if(currentObject == "muon-event pairs") objectToPlot = "muonEventPairs";
1339	>	else if(currentObject == "muon-photon pairs") objectToPlot = "muonPhotonPairs";
1340	>	else if(currentObject == "photon-jet pairs") objectToPlot = "photonJetPairs";
1341	>	else if(currentObject == "met-jet pairs") objectToPlot = "metJetPairs";
1342	>	else if(currentObject == "track-jet pairs") objectToPlot = "trackJetPairs";
1343	>	else if(currentObject == "jet-jet pairs") objectToPlot = "dijetPairs";
1344	>	else if(currentObject == "jet-secondary jet pairs") objectToPlot = "jetSecondaryJetPairs";
1345	>	else if(currentObject == "secondary jets") objectToPlot = "secondaryJets";
1346	>	else if(currentObject == "secondary photons") objectToPlot = "secondaryPhotons";
1347	>	else if(currentObject == "electron-track pairs") objectToPlot = "electronTrackPairs";
1348	>	else if(currentObject == "muon-track pairs") objectToPlot = "muonTrackPairs";
1349	>	else if(currentObject == "secondary muon-track pairs") objectToPlot = "secondaryMuonTrackPairs";
1350	>	else if(currentObject == "muon-tau pairs") objectToPlot = "muonTauPairs";
1351	>	else if(currentObject == "tau-tau pairs") objectToPlot = "ditauPairs";
1352	>	else if(currentObject == "tau-track pairs") objectToPlot = "tauTrackPairs";
1353	>	else if(currentObject == "track-event pairs") objectToPlot = "trackEventPairs";
1354	>	else if(currentObject == "muon-secondary muon pairs") objectToPlot = "muonSecondaryMuonPairs";
1355	>	else if(currentObject == "secondary muons") objectToPlot = "secondaryMuons";
1356	>	else if(currentObject == "muon-secondary jet pairs") objectToPlot = "muonSecondaryJetPairs";
1357	>	else if(currentObject == "muon-secondary photon pairs") objectToPlot = "muonSecondaryJetPairs";
1358	>	else if(currentObject == "electron-secondary jet pairs") objectToPlot = "electronSecondaryJetPairs";
1359	>	else if(currentObject == "photon-secondary jet pairs") objectToPlot = "photonSecondaryJetPairs";
1360	>	else if(currentObject == "electron-secondary electron pairs") objectToPlot = "electronSecondaryElectronPairs";
1361	>	else if(currentObject == "secondary electrons") objectToPlot = "secondaryElectrons";
1362	>	else if(currentObject == "electron-trigobj pairs") objectToPlot = "electronTrigobjPairs";
1363	>	else if(currentObject == "muon-trigobj pairs") objectToPlot = "muonTrigobjPairs";
1364	>	else if(currentObject == "electron-mcparticle pairs") objectToPlot = "electronMCparticlePairs";
1365	>	else objectToPlot = currentObject;
1366	>
1367	>	string tempCurrentObject = objectToPlot;
1368	>	tempCurrentObject.at(0) = toupper(tempCurrentObject.at(0));
1369	>	string histoName = "num" + tempCurrentObject;
1370	>
1371	>
1372	>	if(find(objectsToPlot.begin(), objectsToPlot.end(), currentObject) != objectsToPlot.end()) {
1373	>	flagPair lastCutFlags = cumulativeFlags.at(currentObject).at(currentDir);
1374	>	int numToPlot = 0;
1375	>	for (uint iObj = 0; iObj != lastCutFlags.size(); iObj++){ // loop over all the objects
1376	>	if(lastCutFlags.at(iObj).second) {
1377	>	numToPlot++;
1378	>	if (verbose_>3) clog << " Found object " << iObj << " in collection " << currentObject << " to plot." << endl;
1379	>	}
1380	>	}
1381	>
1382	>	if(objectToPlot == "primaryvertexs"){
1383	>	oneDHists_.at(currentChannelIndex).at(currentCut).at(histoName+"BeforePileupCorrection")->Fill(primaryvertexs->size());
1384	>	oneDHists_.at(currentChannelIndex).at(currentCut).at(histoName+"AfterPileupCorrection")->Fill(primaryvertexs->size(),scaleFactor);
1385	>	}
1386	>	else {
1387	>	if (printEventInfo_) clog << "Number of selected " << objectToPlot << " to plot: " << numToPlot << endl;
1388	>	oneDHists_.at(currentChannelIndex).at(currentCut).at(histoName)->Fill(numToPlot,scaleFactor);
1389	>	}
1390	>	}
1391	>
1392	>	} // end for (uint currentObjectIndex = 0; currentObjectIndex != objectsToPlot.size(); currentObjectIndex++)
1393	>
1394	>
1395	>	} // end if(eventPassedPreviousCuts.at(currentDir))
1396	>	} // end loop over cuts
1397	>
1398	>	if (!useEDMFormat_ && eventPassedAllCuts){
1399	>	// Assign BNTree variables
1400	>	for (uint iBranch = 0; iBranch != treeBranches_.size(); iBranch++) {
1401	>	BranchSpecs brSpecs = treeBranches_.at(iBranch);
1402	>	string coll = brSpecs.inputCollection;
1403	>	if (cumulativeFlags.count(coll) == 0) clog << "Error: no flags found for collection: " << coll << ", will cause a seg fault" << endl;
1404	>
1405	>	if (coll == "jets") assignTreeBranch(brSpecs,jets.product(), cumulativeFlags.at(coll).back());
1406	>	else if(coll == "secondary jets") assignTreeBranch(brSpecs,jets.product(), cumulativeFlags.at(coll).back());
1407	>	else if(coll == "secondary photons") assignTreeBranch(brSpecs,photons.product(), cumulativeFlags.at(coll).back());
1408	>	else if(coll == "muons") assignTreeBranch(brSpecs,muons.product(), cumulativeFlags.at(coll).back());
1409	>	else if(coll == "secondary muons") assignTreeBranch(brSpecs,secMuons.product(), cumulativeFlags.at(coll).back());
1410	>	else if(coll == "electrons") assignTreeBranch(brSpecs,electrons.product(), cumulativeFlags.at(coll).back());
1411	>	else if(coll == "secondary electrons") assignTreeBranch(brSpecs,electrons.product(), cumulativeFlags.at(coll).back());
1412	>	else if(coll == "events") assignTreeBranch(brSpecs,events.product(), cumulativeFlags.at(coll).back());
1413	>	else if(coll == "taus") assignTreeBranch(brSpecs,taus.product(), cumulativeFlags.at(coll).back());
1414	>	else if(coll == "mets") assignTreeBranch(brSpecs,mets.product(), cumulativeFlags.at(coll).back());
1415	>	else if(coll == "tracks") assignTreeBranch(brSpecs,tracks.product(), cumulativeFlags.at(coll).back());
1416	>	else if(coll == "genjets") assignTreeBranch(brSpecs,genjets.product(), cumulativeFlags.at(coll).back());
1417	>	else if(coll == "mcparticles") assignTreeBranch(brSpecs,mcparticles.product(), cumulativeFlags.at(coll).back());
1418	>	else if(coll == "primaryvertexs") assignTreeBranch(brSpecs,primaryvertexs.product(),cumulativeFlags.at(coll).back());
1419	>	else if(coll == "bxlumis") assignTreeBranch(brSpecs,bxlumis.product(), cumulativeFlags.at(coll).back());
1420	>	else if(coll == "photons") assignTreeBranch(brSpecs,photons.product(), cumulativeFlags.at(coll).back());
1421	>	else if(coll == "superclusters") assignTreeBranch(brSpecs,superclusters.product(), cumulativeFlags.at(coll).back());
1422	>	else if(coll == "trigobjs") assignTreeBranch(brSpecs,trigobjs.product(), cumulativeFlags.at(coll).back());
1423	>	else if(coll == "stops"
1424	>	&& datasetType_ == "signalMC") assignTreeBranch(brSpecs,stops.product(), cumulativeFlags.at(coll).back());
1425	>	} // end loop over branches
1426	>	// set the evtLong, runInt, and lumiInt variables separately, since they are not type float
1427	>	BNTreeBranchVals_evtLong_ = events->at(0).evt;
1428	>	BNTreeBranchVals_runInt_ = events->at(0).run;
1429	>	BNTreeBranchVals_lumiInt_ = events->at(0).lumi;
1430
1431	<	BNTrees_.at(currentChannelIndex)->Fill();
1431	>	if (!BNTrees_.at(currentChannelIndex)) { clog << "ERROR: Undefined BNTree. Will likely seg fault." << endl; }
1432	>	BNTrees_.at(currentChannelIndex)->Fill(); // only fill if event has passed cuts
1433	>	}
1434	>
1435	>	(*channelDecisions)[currentChannel.name] = eventPassedAllCuts;
1436
1437		} // end loop over channel
1438
1439		masterCutFlow_->fillCutFlow(masterScaleFactor);
1440
1441	+	event.put (channelDecisions, "channelDecisions");
1442	+
1443	+	isFirstEvent_ = false;
1444	+
1445	+	if (verbose_) clog << "Finished OSUAnalysis::produce." << endl;
1446
1447	<	} // end void OSUAnalysis::analyze (const edm::Event &event, const edm::EventSetup &setup)
1447	>	} // end void OSUAnalysis::produce (const edm::Event &event, const edm::EventSetup &setup)
1448
1449
1450
#	Line 1126 \| Line 1459 \| OSUAnalysis::evaluateComparison (double
1459		else if(comparison == "==") return testValue == cutValue;
1460		else if(comparison == "=") return testValue == cutValue;
1461		else if(comparison == "!=") return testValue != cutValue;
1462	<	else {cout << "WARNING: invalid comparison operator '" << comparison << "'\n"; return false;}
1462	>	else {clog << "WARNING: invalid comparison operator '" << comparison << "'\n"; return false;}
1463
1464		}
1465
#	Line 1139 \| Line 1472 \| OSUAnalysis::evaluateComparison (string
1472		else if(comparison == "<") return testValue < cutValue;
1473		else if(comparison == "<=") return testValue <= cutValue;
1474		else if(comparison == "==") return testValue == cutValue;
1475	<	else if(comparison == "=") return testValue == cutValue;
1475	>	else if(comparison == "=") return testValue == cutValue;
1476		else if(comparison == "!=") return testValue != cutValue;
1477	<	else {cout << "WARNING: invalid comparison operator '" << comparison << "'\n"; return false;}
1477	>	else {clog << "WARNING: invalid comparison operator '" << comparison << "'\n"; return false;}
1478
1479		}
1480
#	Line 1151 \| Line 1484 \| OSUAnalysis::evaluateTriggers (vector<st
1484		//initialize to false until a chosen trigger is passed
1485		bool triggerDecision = false;
1486
1487	+	if (printAllTriggers_) clog << "Printing list of all available triggers (which this event may or may not pass):" << endl;
1488		//loop over all triggers defined in the event
1489		for (BNtriggerCollection::const_iterator trigger = triggerCollection->begin (); trigger != triggerCollection->end (); trigger++){
1490
1491	+	if (printAllTriggers_) clog << " " << trigger->name << endl;
1492	+
1493		//we're only interested in triggers that actually passed
1494		if(trigger->pass != 1) continue;
1495
#	Line 1164 \| Line 1500 \| OSUAnalysis::evaluateTriggers (vector<st
1500		//if the event passes one of the chosen triggers, set triggerDecision to true
1501		for(uint triggerName = 0; triggerName != triggersToTest.size(); triggerName++){
1502		if(trigger->name.find(triggersToTest.at(triggerName))!=string::npos) triggerDecision = true;
1503	<	}
1503	>	}
1504		}
1505	<	//if none of the veto triggers fired:
1505	>
1506	>	printAllTriggers_ = false; // only print triggers once, not every event
1507	>
1508	>	//if none of the veto triggers fired:
1509		//return the OR of all the chosen triggers
1510		if (triggersToTest.size() != 0) return triggerDecision;
1511		//or if no triggers were defined return true
#	Line 1335 \| Line 1674 \| *OSUAnalysis::valueLookup (const BNjet o**
1674		else if(variable == "puJetId_loose_simple") value = object->puJetId_loose_simple;
1675		else if(variable == "puJetId_loose_cutbased") value = object->puJetId_loose_cutbased;
1676
1677	+	//user defined variable
1678	+	else if(variable == "disappTrkLeadingJetID") {
1679	+	value = object->pt > 110
1680	+	&& fabs(object->eta) < 2.4
1681	+	&& object->chargedHadronEnergyFraction > 0.2
1682	+	&& object->neutralHadronEnergyFraction < 0.7
1683	+	&& object->chargedEmEnergyFraction < 0.5
1684	+	&& object->neutralEmEnergyFraction < 0.7;
1685	+	}
1686	+
1687	+	else if(variable == "disappTrkSubLeadingJetID") {
1688	+	value = object->pt > 30
1689	+	&& fabs(object->eta) < 4.5
1690	+	&& object->neutralHadronEnergyFraction < 0.7
1691	+	&& object->chargedEmEnergyFraction < 0.5;
1692	+	}
1693	+
1694	+	else if(variable == "dPhiMet") {
1695	+	if (const BNmet *met = chosenMET ()) {
1696	+	value = deltaPhi (object->phi, met->phi);
1697	+	} else value = -999;
1698	+	}
1699	+
1700
1701	<	else{cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
1701	>	else{clog << "WARNING: invalid jet variable '" << variable << "'\n"; value = -999;}
1702
1703		value = applyFunction(function, value);
1704
1705		return value;
1706	<	}
1706	>	} // end jet valueLookup
1707
1708
1709		//!muon valueLookup
#	Line 1438 \| Line 1800 \| OSUAnalysis::valueLookup (const BNmuon*
1800		else if(variable == "neutralHadronIsoDR04") value = object->neutralHadronIsoDR04;
1801		else if(variable == "photonIsoDR04") value = object->photonIsoDR04;
1802		else if(variable == "puChargedHadronIsoDR04") value = object->puChargedHadronIsoDR04;
1803	+	else if(variable == "chargedHadronIsoDR04") value = object->chargedHadronIsoDR04;
1804	+	else if(variable == "neutralHadronIsoDR04") value = object->neutralHadronIsoDR04;
1805	+	else if(variable == "photonIsoDR04") value = object->photonIsoDR04;
1806	+	else if(variable == "puChargedHadronIsoDR04") value = object->puChargedHadronIsoDR04;
1807		else if(variable == "rhoPrime") value = object->rhoPrime;
1808		else if(variable == "AEffDr03") value = object->AEffDr03;
1809		else if(variable == "AEffDr04") value = object->AEffDr04;
#	Line 1445 \| Line 1811 \| OSUAnalysis::valueLookup (const BNmuon*
1811		else if(variable == "pfIsoR03SumNeutralHadronEt") value = object->pfIsoR03SumNeutralHadronEt;
1812		else if(variable == "pfIsoR03SumPhotonEt") value = object->pfIsoR03SumPhotonEt;
1813		else if(variable == "pfIsoR03SumPUPt") value = object->pfIsoR03SumPUPt;
1814	+	else if(variable == "relpfIsoR04SumExceptChargedHad") value = (object->pfIsoR04SumNeutralHadronEt + object->pfIsoR04SumPhotonEt - 0.5*object->pfIsoR04SumPUPt)/ object->pt;
1815	+	else if(variable == "relpfIsoR04SumChargedHadronPt") value = object->pfIsoR04SumChargedHadronPt/object->pt;
1816	+	else if(variable == "relpfIsoR04SumNeutralHadronEt") value = object->pfIsoR04SumNeutralHadronEt/object->pt;
1817	+	else if(variable == "relpfIsoR04SumPhotonEt") value = object->pfIsoR04SumPhotonEt/object->pt;
1818	+	else if(variable == "relpfIsoR04SumPUPt") value = object->pfIsoR04SumPUPt/object->pt;
1819		else if(variable == "pfIsoR04SumChargedHadronPt") value = object->pfIsoR04SumChargedHadronPt;
1820		else if(variable == "pfIsoR04SumNeutralHadronEt") value = object->pfIsoR04SumNeutralHadronEt;
1821		else if(variable == "pfIsoR04SumPhotonEt") value = object->pfIsoR04SumPhotonEt;
#	Line 1501 \| Line 1872 \| OSUAnalysis::valueLookup (const BNmuon*
1872		else if(variable == "time_ndof") value = object->time_ndof;
1873
1874		//user-defined variables
1875	+	else if(variable == "looseID") {
1876	+	value = object->pt > 10 &&
1877	+	(object->isGlobalMuon > 0 \|\|
1878	+	object->isTrackerMuon > 0);
1879	+	}
1880	+
1881	+	else if(variable == "looseIDGlobalMuon") {
1882	+	value = object->pt > 10 &&
1883	+	object->isGlobalMuon > 0;
1884	+	}
1885		else if(variable == "correctedD0VertexErr") value = hypot (object->tkD0err, hypot (chosenVertex ()->xError, chosenVertex ()->yError));
1886		else if(variable == "correctedD0VertexSig") value = object->correctedD0Vertex / hypot (object->tkD0err, hypot (chosenVertex ()->xError, chosenVertex ()->yError));
1887		else if(variable == "detIso") value = (object->trackIsoDR03) / object->pt;
1888		else if(variable == "relPFdBetaIso") value = (object->pfIsoR04SumChargedHadronPt + max(0.0, object->pfIsoR04SumNeutralHadronEt + object->pfIsoR04SumPhotonEt - 0.5*object->pfIsoR04SumPUPt)) / object->pt;
1889	+	else if(variable == "relPFdBetaIsoPseudo") value = (object->pfIsoR04SumChargedHadronPt + object->pfIsoR04SumNeutralHadronEt + object->pfIsoR04SumPhotonEt - 0.5*object->pfIsoR04SumPUPt) / object->pt;
1890		else if(variable == "relPFrhoIso") value = ( object->chargedHadronIso + max(0.0, object->neutralHadronIso + object->photonIso - object->AEffDr03*object->rhoPrime) ) / object->pt;
1891		else if(variable == "metMT") {
1892		if (const BNmet *met = chosenMET ())
#	Line 1515 \| Line 1897 \| OSUAnalysis::valueLookup (const BNmuon*
1897		else
1898		value = -999;
1899		}
1900	<
1901	<
1900	>	else if(variable == "ptPlusMet") {
1901	>	// Calculate the magnitude of the vector sum of the muon pT and the Met.
1902	>	if (const BNmet *met = chosenMET ())
1903	>	{
1904	>	TVector2 p2Met;
1905	>	TVector2 p2Muon;
1906	>	p2Met. SetMagPhi( met->pt, met->phi);
1907	>	p2Muon.SetMagPhi(object->pt, object->phi);
1908	>	TVector2 p2MetElec = p2Met + p2Muon;
1909	>	value = p2MetElec.Mod();
1910	>	}
1911	>	else
1912	>	value = -999;
1913	>	}
1914
1915		else if(variable == "correctedD0VertexInEBPlus"){
1916		if(fabs(object->eta) < 0.8 && object->eta > 0) value = object->correctedD0Vertex;
#	Line 1701 \| Line 2095 \| OSUAnalysis::valueLookup (const BNmuon*
2095
2096
2097
2098	<	else{cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
2098	>	else{clog << "WARNING: invalid muon variable '" << variable << "'\n"; value = -999;}
2099
2100		value = applyFunction(function, value);
2101
2102		return value;
2103	<	}
2103	>	} // end muon valueLookup
2104	>
2105
2106		//!electron valueLookup
2107		double
#	Line 1875 \| Line 2270 \| OSUAnalysis::valueLookup (const BNelectr
2270		else if(variable == "correctedD0VertexSig") value = object->correctedD0Vertex / hypot (object->tkD0err, hypot (chosenVertex ()->xError, chosenVertex ()->yError));
2271		else if(variable == "detIso") value = (object->trackIso) / object->pt;
2272		else if(variable == "relPFrhoIso") value = ( object->chargedHadronIsoDR03 + max(0.0, object->neutralHadronIsoDR03 + object->photonIsoDR03 - object->AEffDr03*object->rhoPrime) ) / object->pt;
2273	+	else if(variable == "relPFrhoIsoEB") value = object->isEB ? ( object->chargedHadronIsoDR03 + max(0.0, object->neutralHadronIsoDR03 + object->photonIsoDR03 - object->AEffDr03*object->rhoPrime) ) / object->pt : -999;
2274	+	else if(variable == "relPFrhoIsoEE") value = object->isEE ? ( object->chargedHadronIsoDR03 + max(0.0, object->neutralHadronIsoDR03 + object->photonIsoDR03 - object->AEffDr03*object->rhoPrime) ) / object->pt : -999;
2275		else if(variable == "metMT") {
2276		if (const BNmet *met = chosenMET ())
2277		{
#	Line 1885 \| Line 2282 \| OSUAnalysis::valueLookup (const BNelectr
2282		value = -999;
2283		}
2284
2285	+	else if(variable == "ptPlusMet") {
2286	+	// Calculate the magnitude of the vector sum of the electron pT and the Met.
2287	+	if (const BNmet *met = chosenMET ())
2288	+	{
2289	+	TVector2 p2Met;
2290	+	TVector2 p2Elec;
2291	+	p2Met. SetMagPhi( met->pt, met->phi);
2292	+	p2Elec.SetMagPhi(object->pt, object->phi);
2293	+	TVector2 p2MetElec = p2Met + p2Elec;
2294	+	value = p2MetElec.Mod();
2295	+	}
2296	+	else
2297	+	value = -999;
2298	+	}
2299	+
2300		else if(variable == "correctedD0VertexEEPositiveChargeLowPt"){
2301		if(fabs(object->eta) > 1.479 && object->charge > 0 && object->pt > 45) value = object->correctedD0Vertex;
2302		else value = -999;
#	Line 1946 \| Line 2358 \| OSUAnalysis::valueLookup (const BNelectr
2358		else value = -999;
2359		}
2360
2361	+	else if(variable == "looseID"){
2362	+	if (object->isEB)
2363	+	{
2364	+	value = fabs(object->delEtaIn) < 0.007 \
2365	+	&& fabs (object->delPhiIn) < 0.15 \
2366	+	&& object->scSigmaIEtaIEta < 0.01 \
2367	+	&& object->hadOverEm < 0.12 \
2368	+	&& fabs (object->correctedD0Vertex) < 0.02 \
2369	+	&& fabs (object->correctedDZ) < 0.2 \
2370	+	&& object->absInvEMinusInvPin < 0.05 \
2371	+	&& object->passConvVeto;
2372	+	}
2373	+	else
2374	+	{
2375	+	value = fabs(object->delEtaIn) < 0.009 \
2376	+	&& fabs (object->delPhiIn) < 0.10 \
2377	+	&& object->scSigmaIEtaIEta < 0.03 \
2378	+	&& object->hadOverEm < 0.10 \
2379	+	&& fabs (object->correctedD0Vertex) < 0.02 \
2380	+	&& fabs (object->correctedDZ) < 0.2 \
2381	+	&& object->absInvEMinusInvPin < 0.05 \
2382	+	&& object->passConvVeto;
2383	+	}
2384	+	}
2385	+
2386		else if(variable == "tightID"){
2387		if (object->isEB)
2388		{
#	Line 1971 \| Line 2408 \| OSUAnalysis::valueLookup (const BNelectr
2408		}
2409		}
2410
2411	+	else if(variable == "looseID_MVA"){
2412	+	value = object->pt > 10
2413	+	&& object->mvaNonTrigV0 > 0;
2414	+	}
2415		else if(variable == "correctedD0VertexInEBPositiveCharge"){
2416		if(fabs(object->eta) < 0.8 && object->charge > 0) value = object->correctedD0Vertex;
2417		else value = -999;
#	Line 2101 \| Line 2542 \| OSUAnalysis::valueLookup (const BNelectr
2542
2543
2544
2545	<	else{cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
2545	>	else{clog << "WARNING: invalid electron variable '" << variable << "'\n"; value = -999;}
2546
2547		value = applyFunction(function, value);
2548
2549		return value;
2550	<	}
2550	>	} // end electron valueLookup
2551	>
2552
2553		//!event valueLookup
2554		double
#	Line 2187 \| Line 2629 \| OSUAnalysis::valueLookup (const BNevent*
2629		else if(variable == "muonScaleFactor") value = muonScaleFactor_;
2630		else if(variable == "electronScaleFactor") value = electronScaleFactor_;
2631		else if(variable == "stopCTauScaleFactor") value = stopCTauScaleFactor_;
2632	+	else if(variable == "bTagScaleFactor") value = bTagScaleFactor_;
2633	+
2634	+	else if(variable == "unfilteredHt") value = getHt(jets.product());
2635	+	else if(variable == "ht") value = chosenHT ();
2636
2637	<	else{cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
2637	>	else if(variable == "leadMuPairInvMass"){
2638	>	pair<const BNmuon , const BNmuon > muPair = leadMuonPair ();
2639	>	TLorentzVector p0 (muPair.first->px, muPair.first->py, muPair.first->pz, muPair.first->energy),
2640	>	p1 (muPair.second->px, muPair.second->py, muPair.second->pz, muPair.second->energy);
2641	>	value = (p0 + p1).M ();
2642	>	}
2643	>	else if(variable == "leadMuPairPt"){
2644	>	pair<const BNmuon , const BNmuon > muPair = leadMuonPair ();
2645	>	TVector2 pt0 (muPair.first->px, muPair.first->py),
2646	>	pt1 (muPair.second->px, muPair.second->py);
2647	>	pt0 += pt1;
2648	>	value = pt0.Mod ();
2649	>	}
2650	>	else if(variable == "leadElPairInvMass"){
2651	>	pair<const BNelectron , const BNelectron > muPair = leadElectronPair ();
2652	>	TLorentzVector p0 (muPair.first->px, muPair.first->py, muPair.first->pz, muPair.first->energy),
2653	>	p1 (muPair.second->px, muPair.second->py, muPair.second->pz, muPair.second->energy);
2654	>	value = (p0 + p1).M ();
2655	>	}
2656	>	else if(variable == "leadElPairPt"){
2657	>	pair<const BNelectron , const BNelectron > muPair = leadElectronPair ();
2658	>	TVector2 pt0 (muPair.first->px, muPair.first->py),
2659	>	pt1 (muPair.second->px, muPair.second->py);
2660	>	pt0 += pt1;
2661	>	value = pt0.Mod ();
2662	>	}
2663	>	else{clog << "WARNING: invalid event variable '" << variable << "'\n"; value = -999;}
2664
2665		value = applyFunction(function, value);
2666
2667		return value;
2668	<	}
2668	>	} // end event valueLookup
2669	>
2670
2671		//!tau valueLookup
2672		double
#	Line 2241 \| Line 2714 \| *OSUAnalysis::valueLookup (const BNtau o**
2714		else if(variable == "HPSdecayModeFinding") value = object->HPSdecayModeFinding;
2715		else if(variable == "leadingTrackValid") value = object->leadingTrackValid;
2716
2717	<
2717	>	else if (variable == "looseHadronicID") {
2718	>	//criteria taken from http://cms.cern.ch/iCMS/jsp/db_notes/showNoteDetails.jsp?noteID=CMS%20AN-2011/019
2719	>	value = object->pt > 30
2720	>	&& fabs(object->eta) < 2.3
2721	>	&& object->HPSbyLooseCombinedIsolationDeltaBetaCorr > 0
2722	>	&& object->HPSdecayModeFinding > 0
2723	>	&& object->HPSagainstElectronLoose > 0
2724	>	&& object->HPSagainstMuonTight > 0;
2725	>	}
2726
2727		else if(variable == "genDeltaRLowest") value = getGenDeltaRLowest(object);
2728
#	Line 2288 \| Line 2769 \| *OSUAnalysis::valueLookup (const BNtau o**
2769		}
2770
2771
2772	<	else{cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
2772	>	else{clog << "WARNING: invalid tau variable '" << variable << "'\n"; value = -999;}
2773
2774		value = applyFunction(function, value);
2775
2776		return value;
2777	<	}
2777	>	} // end tau valueLookup
2778	>
2779
2780		//!met valueLookup
2781		double
#	Line 2361 \| Line 2843 \| *OSUAnalysis::valueLookup (const BNmet o**
2843		else if(variable == "pfT1jet10pt") value = object->pfT1jet10pt;
2844		else if(variable == "pfT1jet10phi") value = object->pfT1jet10phi;
2845
2846	<	else{cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
2846	>	else{clog << "WARNING: invalid met variable '" << variable << "'\n"; value = -999;}
2847
2848		value = applyFunction(function, value);
2849
2850		return value;
2851	<	}
2851	>	} // end met valueLookup
2852	>
2853
2854		//!track valueLookup
2855		double
#	Line 2394 \| Line 2877 \| OSUAnalysis::valueLookup (const BNtrack*
2877		else if(variable == "numValidHits") value = object->numValidHits;
2878		else if(variable == "isHighPurity") value = object->isHighPurity;
2879
2397	–
2880		//additional BNs info for disappTrks
2881	<	else if(variable == "caloEMDeltaRp3") value = object->caloEMDeltaRp3;
2882	<	else if(variable == "caloHadDeltaRp3") value = object->caloHadDeltaRp3;
2883	<	else if(variable == "caloEMDeltaRp4") value = object->caloEMDeltaRp4;
2884	<	else if(variable == "caloHadDeltaRp4") value = object->caloHadDeltaRp4;
2885	<	else if(variable == "caloEMDeltaRp5") value = object->caloEMDeltaRp5;
2886	<	else if(variable == "caloHadDeltaRp5") value = object->caloHadDeltaRp5;
2887	<	else if(variable == "nTracksRp5") value = object->nTracksRp5;
2888	<	else if(variable == "nHitsMissingOuter") value = object->nHitsMissingOuter;
2407	<	else if(variable == "nHitsMissingInner") value = object->nHitsMissingInner;
2881	>	else if(variable == "caloEMDeltaRp3") value = object->caloEMDeltaRp3;
2882	>	else if(variable == "caloHadDeltaRp3") value = object->caloHadDeltaRp3;
2883	>	else if(variable == "caloEMDeltaRp4") value = object->caloEMDeltaRp4;
2884	>	else if(variable == "caloHadDeltaRp4") value = object->caloHadDeltaRp4;
2885	>	else if(variable == "caloEMDeltaRp5") value = object->caloEMDeltaRp5;
2886	>	else if(variable == "caloHadDeltaRp5") value = object->caloHadDeltaRp5;
2887	>	else if(variable == "nHitsMissingOuter") value = object->nHitsMissingOuter;
2888	>	else if(variable == "nHitsMissingInner") value = object->nHitsMissingInner;
2889		else if(variable == "nHitsMissingMiddle") value = object->nHitsMissingMiddle;
2890	<	else if(variable == "depTrkRp5") value = object->depTrkRp5;
2890	>	else if(variable == "depTrkRp3") value = object->depTrkRp3;
2891	>	else if(variable == "trkRelIsoRp3") { value = (object->depTrkRp3 - object->pt) / object->pt; if (value<0) value = 0; }
2892	>	else if(variable == "trkRelIsoRp5") { value = (object->depTrkRp5 - object->pt) / object->pt; if (value<0) value = 0; }
2893	>	else if(variable == "depEcalRp3") value = object->depEcalRp3;
2894	>	else if(variable == "depHcalRp3") value = object->depHcalRp3;
2895	>	else if(variable == "depHoRp3") value = object->depHoRp3;
2896	>	else if(variable == "nTracksRp3") value = object->nTracksRp3;
2897	>	else if(variable == "trackerVetoPtRp3") value = object->trackerVetoPtRp3;
2898	>	else if(variable == "emVetoEtRp3") value = object->emVetoEtRp3;
2899	>	else if(variable == "hadVetoEtRp3") value = object->hadVetoEtRp3;
2900	>	else if(variable == "hoVetoEtRp3") value = object->hoVetoEtRp3;
2901	>	else if(variable == "depTrkRp5") value = object->depTrkRp5;
2902	>	else if(variable == "depEcalRp5") value = object->depEcalRp5;
2903	>	else if(variable == "depHcalRp5") value = object->depHcalRp5;
2904	>	else if(variable == "depHoRp5") value = object->depHoRp5;
2905	>	else if(variable == "nTracksRp5") value = object->nTracksRp5;
2906	>	else if(variable == "trackerVetoPtRp5") value = object->trackerVetoPtRp5;
2907	>	else if(variable == "emVetoEtRp5") value = object->emVetoEtRp5;
2908	>	else if(variable == "hadVetoEtRp5") value = object->hadVetoEtRp5;
2909	>	else if(variable == "hoVetoEtRp5") value = object->hoVetoEtRp5;
2910
2911		//user defined variables
2912		else if(variable == "d0wrtBS") value = (object->vx-events->at(0).BSx)object->py/object->pt - (object->vy-events->at(0).BSy)object->px/object->pt;
2913		else if(variable == "dZwrtBS") value = object->dZ - events->at(0).BSz;
2914	<	else if(variable == "depTrkRp5MinusPt") value = (object->depTrkRp5 - object->pt);
2914	>	else if(variable == "depTrkRp5MinusPt"){
2915	>	if ( (object->depTrkRp5 - object->pt) < 0 ) {
2916	>	// clog << "Warning: found track with depTrkRp5 < pt: depTrkRp5=" << object->depTrkRp5
2917	>	// << "; pt=" << object->pt
2918	>	// << "; object->depTrkRp5 - object->pt = " << object->depTrkRp5 - object->pt
2919	>	// << endl;
2920	>	value = 0;
2921	>	}
2922	>	else value = (object->depTrkRp5 - object->pt);
2923	>	}
2924	>	else if(variable == "depTrkRp3MinusPt"){
2925	>	if ( (object->depTrkRp3 - object->pt) < 0 ) {
2926	>	value = 0;
2927	>	}
2928	>	else value = (object->depTrkRp3 - object->pt);
2929	>	}
2930	>
2931	>	else if(variable == "dPhiMet") {
2932	>	if (const BNmet *met = chosenMET ()) {
2933	>	value = deltaPhi (object->phi, met->phi);
2934	>	} else value = -999;
2935	>	}
2936	>
2937	>
2938		else if(variable == "caloTotDeltaRp5") value = (object->caloHadDeltaRp5 + object->caloEMDeltaRp5);
2939		else if(variable == "caloTotDeltaRp5ByP") value = ((object->caloHadDeltaRp5 + object->caloEMDeltaRp5)/pMag);
2940		else if(variable == "caloTotDeltaRp5RhoCorr") value = getTrkCaloTotRhoCorr(object);
2941		else if(variable == "caloTotDeltaRp5ByPRhoCorr") value = getTrkCaloTotRhoCorr(object) / pMag;
2942	+	else if(variable == "depTrkRp5RhoCorr") value = getTrkDepTrkRp5RhoCorr(object);
2943	+	else if(variable == "depTrkRp3RhoCorr") value = getTrkDepTrkRp3RhoCorr(object);
2944	+
2945	+	else if(variable == "depTrkRp5MinusPtRhoCorr") {
2946	+	if ( (getTrkDepTrkRp5RhoCorr(object) - object->pt) < 0 ) value = 0;
2947	+	else {value = (getTrkDepTrkRp5RhoCorr(object) - object->pt );}
2948	+	}
2949	+
2950	+	else if(variable == "depTrkRp3MinusPtRhoCorr")
2951	+	{
2952	+	if ( (getTrkDepTrkRp3RhoCorr(object) - object->pt) < 0 ) value = 0;
2953	+	else {value = (getTrkDepTrkRp3RhoCorr(object) - object->pt );}
2954	+	}
2955	+
2956		else if(variable == "isIso") value = getTrkIsIso(object, tracks.product());
2957		else if(variable == "isMatchedDeadEcal") value = getTrkIsMatchedDeadEcal(object);
2958		else if(variable == "ptErrorByPt") value = (object->ptError/object->pt);
#	Line 2439 \| Line 2976 \| OSUAnalysis::valueLookup (const BNtrack*
2976		pt = object->pt;
2977		value = vz - (vx * px + vy * py)/pt * (pz/pt);
2978		}
2979	+
2980	+	else if(variable == "deltaRMinSubLeadJet") {
2981	+	// calculate minimum deltaR between track and any other subleading jet
2982	+	double trkJetDeltaRMin = 99.;
2983	+	for (uint ijet = 0; ijet<jets->size(); ijet++) {
2984	+	string empty = "";
2985	+	double isSubLeadingJet = valueLookup(&jets->at(ijet), "disappTrkSubLeadingJetID", "", empty);
2986	+	if (!isSubLeadingJet) continue; // only consider jets that pass the subleading jet ID criteria
2987	+	double jetEta = valueLookup(&jets->at(ijet), "eta", "", empty);
2988	+	double jetPhi = valueLookup(&jets->at(ijet), "phi", "", empty);
2989	+	double trkJetDeltaR = deltaR(object->eta, object->phi, jetEta, jetPhi);
2990	+	if (trkJetDeltaR < trkJetDeltaRMin) trkJetDeltaRMin = trkJetDeltaR;
2991	+	}
2992	+	value = trkJetDeltaRMin;
2993	+	}
2994	+
2995	+	else if(variable == "deltaRMinElecLooseMvaId") {
2996	+	// calculate minimum deltaR between track and any other electron passing loose mva ID, i.e., mvaNonTrigV0 > 0
2997	+	double trkElecDeltaRMin = 99.;
2998	+	for (uint ielec = 0; ielec<electrons->size(); ielec++) {
2999	+	string empty = "";
3000	+	double mvaNonTrigV0 = valueLookup(&electrons->at(ielec), "mvaNonTrigV0", "", empty);
3001	+	if (mvaNonTrigV0 < 0) continue; // only consider electrons with mvaNonTrigV0 > 0
3002	+	double elecEta = valueLookup(&electrons->at(ielec), "eta", "", empty);
3003	+	double elecPhi = valueLookup(&electrons->at(ielec), "phi", "", empty);
3004	+	double trkElecDeltaR = deltaR(object->eta, object->phi, elecEta, elecPhi);
3005	+	if (trkElecDeltaR < trkElecDeltaRMin) trkElecDeltaRMin = trkElecDeltaR;
3006	+	}
3007	+	value = trkElecDeltaRMin;
3008	+	}
3009	+
3010	+	else if(variable == "deltaRMinMuonLooseId") {
3011	+	// calculate minimum deltaR between track and any other loose-Id muon
3012	+	double trkMuonDeltaRMin = 99.;
3013	+	// if (!muons) cout << "ERROR: could not find muon collection for calculation of deltaRMinMuonLooseId" << endl;
3014	+	for (uint imuon = 0; imuon<muons->size(); imuon++) {
3015	+	string empty = "";
3016	+	double isLooseIdMuon = valueLookup(&muons->at(imuon), "looseID", "", empty);
3017	+	if (!isLooseIdMuon) continue; // only consider muons that pass the looseID criteria
3018	+	double muonEta = valueLookup(&muons->at(imuon), "eta", "", empty);
3019	+	double muonPhi = valueLookup(&muons->at(imuon), "phi", "", empty);
3020	+	double trkMuonDeltaR = deltaR(object->eta, object->phi, muonEta, muonPhi);
3021	+	if (trkMuonDeltaR < trkMuonDeltaRMin) trkMuonDeltaRMin = trkMuonDeltaR;
3022	+	}
3023	+	value = trkMuonDeltaRMin;
3024	+	}
3025	+
3026	+	else if(variable == "isPassMuonLooseIDVeto") {
3027	+
3028	+	// calculate minimum deltaR between track and any other loose-Id
3029	+	double trkMuonDeltaRMin = 99.;
3030	+	// if (!muons) cout << "ERROR: could not find muon collection for calculation of deltaRMinMuonLooseId" <<
3031	+	for (uint imuon = 0; imuon<muons->size(); imuon++) {
3032	+	string empty = "";
3033	+	double isLooseIdMuon = valueLookup(&muons->at(imuon), "looseID", "", empty);
3034	+	if (!isLooseIdMuon) continue; // only consider muons that pass the looseID
3035	+	double muonEta = valueLookup(&muons->at(imuon), "eta", "", empty);
3036	+	double muonPhi = valueLookup(&muons->at(imuon), "phi", "", empty);
3037	+	double trkMuonDeltaR = deltaR(object->eta, object->phi, muonEta, muonPhi);
3038	+	if (trkMuonDeltaR < trkMuonDeltaRMin) trkMuonDeltaRMin = trkMuonDeltaR;
3039	+	}
3040	+	if (trkMuonDeltaRMin < 0.15) value = 1;
3041	+	if (trkMuonDeltaRMin > 0.15) value = 0;
3042	+	}
3043	+
3044	+
3045	+
3046	+	else if(variable == "deltaRMinSecMuonLooseIdGlobal") {
3047	+	// calculate minimum deltaR between track and any other loose-Id muon
3048	+	double trkMuonDeltaRMin = 99.;
3049	+	// if (!secMuons) cout << "ERROR: could not find secondary muon collection for calculation of deltaRMinSecMuonLooseIdGlobal" << endl;
3050	+	for (uint imuon = 0; imuon<secMuons->size(); imuon++) {
3051	+	string empty = "";
3052	+	double isLooseIdMuon = valueLookup(&secMuons->at(imuon), "looseIDGlobalMuon", "", empty);
3053	+	if (!isLooseIdMuon) continue; // only consider muons that pass the looseIDGlobal criteria
3054	+	double muonEta = valueLookup(&secMuons->at(imuon), "eta", "", empty);
3055	+	double muonPhi = valueLookup(&secMuons->at(imuon), "phi", "", empty);
3056	+	double trkMuonDeltaR = deltaR(object->eta, object->phi, muonEta, muonPhi);
3057	+	if (trkMuonDeltaR < trkMuonDeltaRMin) trkMuonDeltaRMin = trkMuonDeltaR;
3058	+	}
3059	+	value = trkMuonDeltaRMin;
3060	+	}
3061	+
3062	+	else if(variable == "deltaRMinTauLooseHadronicId") {
3063	+	// calculate minimum deltaR between track and any other tau passing loose hadronic ID
3064	+	double trkTauDeltaRMin = 99.;
3065	+	// if (!taus) cout << "ERROR: could not find tau collection for calculation of deltaRMinTauLooseHadronicId" << endl;
3066	+	for (uint itau = 0; itau<taus->size(); itau++) {
3067	+	string empty = "";
3068	+	double isIdTau = valueLookup(&taus->at(itau), "looseHadronicID", "", empty);
3069	+	if (!isIdTau) continue; // only consider taus that pass the loose hadronic ID criteria
3070	+	double tauEta = valueLookup(&taus->at(itau), "eta", "", empty);
3071	+	double tauPhi = valueLookup(&taus->at(itau), "phi", "", empty);
3072	+	double trkTauDeltaR = deltaR(object->eta, object->phi, tauEta, tauPhi);
3073	+	if (trkTauDeltaR < trkTauDeltaRMin) trkTauDeltaRMin = trkTauDeltaR;
3074	+	}
3075	+	value = trkTauDeltaRMin;
3076	+	}
3077	+
3078		else if(variable == "genDeltaRLowest") value = getGenDeltaRLowest(object);
3079
3080		else if(variable == "genMatchedPdgId"){
#	Line 2486 \| Line 3122 \| OSUAnalysis::valueLookup (const BNtrack*
3122
3123
3124
3125	<	else{cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
3125	>	else{clog << "WARNING: invalid track variable '" << variable << "'\n"; value = -999;}
3126
3127		value = applyFunction(function, value);
3128
3129		return value;
3130	<	}
3130	>	} // end track valueLookup
3131	>
3132
3133		//!genjet valueLookup
3134		double
#	Line 2515 \| Line 3152 \| OSUAnalysis::valueLookup (const BNgenjet
3152		else if(variable == "charge") value = object->charge;
3153
3154
3155	<	else{cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
3155	>	else{clog << "WARNING: invalid genjet variable '" << variable << "'\n"; value = -999;}
3156
3157		value = applyFunction(function, value);
3158
#	Line 2649 \| Line 3286 \| OSUAnalysis::valueLookup (const BNmcpart
3286		}
3287
3288
3289	<	else{cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
3289	>	else{clog << "WARNING: invalid mcparticle variable '" << variable << "'\n"; value = -999;}
3290
3291		value = applyFunction(function, value);
3292
3293		return value;
3294	<	}
3294	>	} // end mcparticle valueLookup
3295	>
3296
3297		//!primaryvertex valueLookup
3298		double
#	Line 2677 \| Line 3315 \| OSUAnalysis::valueLookup (const BNprimar
3315		else if(variable == "isGood") value = object->isGood;
3316
3317
3318	<	else{cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
3318	>	else{clog << "WARNING: invalid primaryvertex variable '" << variable << "'\n"; value = -999;}
3319
3320		value = applyFunction(function, value);
3321
#	Line 2695 \| Line 3333 \| OSUAnalysis::valueLookup (const BNbxlumi
3333		else if(variable == "bx_LUMI_now") value = object->bx_LUMI_now;
3334
3335
3336	<	else{cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
3336	>	else{clog << "WARNING: invalid bxlumi variable '" << variable << "'\n"; value = -999;}
3337
3338		value = applyFunction(function, value);
3339
#	Line 2828 \| Line 3466 \| OSUAnalysis::valueLookup (const BNphoton
3466		}
3467
3468
3469	<	else{cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
3469	>	else{clog << "WARNING: invalid photon variable '" << variable << "'\n"; value = -999;}
3470
3471		value = applyFunction(function, value);
3472
3473		return value;
3474	<	}
3474	>	} // end photon valueLookup
3475	>
3476
3477		//!supercluster valueLookup
3478		double
#	Line 2851 \| Line 3490 \| OSUAnalysis::valueLookup (const BNsuperc
3490		else if(variable == "theta") value = object->theta;
3491
3492
3493	<	else{cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
3493	>	else{clog << "WARNING: invalid supercluster variable '" << variable << "'\n"; value = -999;}
3494
3495		value = applyFunction(function, value);
3496
#	Line 2885 \| Line 3524 \| OSUAnalysis::valueLookup (const BNtrigob
3524		stringValue = "none"; // stringValue should only be empty if value is filled
3525		}
3526
3527	<	else{cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
3527	>	else{clog << "WARNING: invalid trigobj variable '" << variable << "'\n"; value = -999;}
3528
3529		value = applyFunction(function, value);
3530
#	Line 2956 \| Line 3595 \| OSUAnalysis::valueLookup (const BNmuon*
3595		value = object2->correctedD0;
3596		}
3597
3598	<	else{cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
3598	>	else{clog << "WARNING: invalid muon-muon pair variable '" << variable << "'\n"; value = -999;}
3599
3600		value = applyFunction(function, value);
3601
3602		return value;
3603	<	}
3603	>	} // end muon-muon pair valueLookup
3604	>
3605	>
3606	>	//!muon-photon pair valueLookup
3607	>	double
3608	>	OSUAnalysis::valueLookup (const BNmuon* object1, const BNphoton* object2, string variable, string function, string &stringValue){
3609	>
3610	>	double value = 0.0;
3611	>
3612	>	if(variable == "deltaPhi") value = fabs(deltaPhi(object1->phi,object2->phi));
3613	>	else if(variable == "deltaEta") value = fabs(object1->eta - object2->eta);
3614	>	else if(variable == "photonEta") value = object2->eta;
3615	>	else if(variable == "photonPt") value = object2->pt;
3616	>	else if(variable == "muonEta") value = object1->eta;
3617	>	else if(variable == "photonPhi") value = object2->phi;
3618	>	else if(variable == "muonPhi") value = object1->phi;
3619	>	else if(variable == "deltaR") value = deltaR(object1->eta,object1->phi,object2->eta,object2->phi);
3620	>	else if(variable == "photonGenMotherId") value = object2->genMotherId;
3621	>	else if(variable == "muonRelPFdBetaIso") value = (object1->pfIsoR04SumChargedHadronPt + max(0.0, object1->pfIsoR04SumNeutralHadronEt + object1->pfIsoR04SumPhotonEt - 0.5*object1->pfIsoR04SumPUPt)) / object1->pt;
3622	>	else if(variable == "invMass"){
3623	>	TLorentzVector fourVector1(object1->px, object1->py, object1->pz, object1->energy);
3624	>	TLorentzVector fourVector2(object2->px, object2->py, object2->pz, object2->energy);
3625	>	value = (fourVector1 + fourVector2).M();
3626	>	}
3627	>	else if(variable == "pt"){
3628	>	TLorentzVector fourVector1(object1->px, object1->py, object1->pz, object1->energy);
3629	>	TLorentzVector fourVector2(object2->px, object2->py, object2->pz, object2->energy);
3630	>	value = (fourVector1 + fourVector2).Pt();
3631	>	}
3632	>	else if(variable == "threeDAngle")
3633	>	{
3634	>	TVector3 threeVector1(object1->px, object1->py, object1->pz);
3635	>	TVector3 threeVector2(object2->px, object2->py, object2->pz);
3636	>	value = (threeVector1.Angle(threeVector2));
3637	>	}
3638	>	else if(variable == "alpha")
3639	>	{
3640	>	static const double pi = 3.1415926535897932384626433832795028841971693993751058;
3641	>	TVector3 threeVector1(object1->px, object1->py, object1->pz);
3642	>	TVector3 threeVector2(object2->px, object2->py, object2->pz);
3643	>	value = (pi-threeVector1.Angle(threeVector2));
3644	>	}
3645	>	else{clog << "WARNING: invalid muon-photon pair variable '" << variable << "'\n"; value = -999;}
3646	>
3647	>	value = applyFunction(function, value);
3648	>
3649	>	return value;
3650	>	} // end muon-photon pair valueLookup
3651	>
3652	>
3653	>	//!electron-photon pair valueLookup
3654	>	double
3655	>	OSUAnalysis::valueLookup (const BNelectron* object1, const BNphoton* object2, string variable, string function, string &stringValue){
3656	>
3657	>	double value = 0.0;
3658	>
3659	>	if(variable == "deltaPhi") value = fabs(deltaPhi(object1->phi,object2->phi));
3660	>	else if(variable == "deltaEta") value = fabs(object1->eta - object2->eta);
3661	>	else if(variable == "photonEta") value = object2->eta;
3662	>	else if(variable == "photonPt") value = object2->pt;
3663	>	else if(variable == "electronEta") value = object1->eta;
3664	>	else if(variable == "photonPhi") value = object2->phi;
3665	>	else if(variable == "electronPhi") value = object1->phi;
3666	>	else if(variable == "deltaR") value = deltaR(object1->eta,object1->phi,object2->eta,object2->phi);
3667	>	else if(variable == "photonGenMotherId") value = object2->genMotherId;
3668	>	else if(variable == "electronRelPFrhoIso") value = ( object1->chargedHadronIsoDR03 + max(0.0, object1->neutralHadronIsoDR03 + object1->photonIsoDR03 - object1->AEffDr03*object1->rhoPrime) ) / object1->pt;
3669	>	else if(variable == "invMass"){
3670	>	TLorentzVector fourVector1(object1->px, object1->py, object1->pz, object1->energy);
3671	>	TLorentzVector fourVector2(object2->px, object2->py, object2->pz, object2->energy);
3672	>	value = (fourVector1 + fourVector2).M();
3673	>	}
3674	>	else if(variable == "pt"){
3675	>	TLorentzVector fourVector1(object1->px, object1->py, object1->pz, object1->energy);
3676	>	TLorentzVector fourVector2(object2->px, object2->py, object2->pz, object2->energy);
3677	>	value = (fourVector1 + fourVector2).Pt();
3678	>	}
3679	>	else if(variable == "threeDAngle")
3680	>	{
3681	>	TVector3 threeVector1(object1->px, object1->py, object1->pz);
3682	>	TVector3 threeVector2(object2->px, object2->py, object2->pz);
3683	>	value = (threeVector1.Angle(threeVector2));
3684	>	}
3685	>	else if(variable == "alpha")
3686	>	{
3687	>	static const double pi = 3.1415926535897932384626433832795028841971693993751058;
3688	>	TVector3 threeVector1(object1->px, object1->py, object1->pz);
3689	>	TVector3 threeVector2(object2->px, object2->py, object2->pz);
3690	>	value = (pi-threeVector1.Angle(threeVector2));
3691	>	}
3692	>	else{clog << "WARNING: invalid electron-photon pair variable '" << variable << "'\n"; value = -999;}
3693	>
3694	>	value = applyFunction(function, value);
3695	>
3696	>	return value;
3697	>	} // end electron-photon pair valueLookup
3698	>
3699
3700		//!electron-electron pair valueLookup
3701		double
#	Line 3012 \| Line 3746 \| OSUAnalysis::valueLookup (const BNelectr
3746		value = object2->correctedD0;
3747		}
3748
3749	<	else{cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
3749	>	else{clog << "WARNING: invalid electron-electron pair variable '" << variable << "'\n"; value = -999;}
3750
3751		value = applyFunction(function, value);
3752
3753		return value;
3754	<	}
3754	>	} // end electron-electron pair valueLookup
3755	>
3756	>
3757		//!electron-muon pair valueLookup
3758		double
3759		OSUAnalysis::valueLookup (const BNelectron* object1, const BNmuon* object2, string variable, string function, string &stringValue){
#	Line 3078 \| Line 3814 \| OSUAnalysis::valueLookup (const BNelectr
3814		else if(variable == "muonRelPFdBetaIso"){
3815		value = (object2->pfIsoR04SumChargedHadronPt + max(0.0, object2->pfIsoR04SumNeutralHadronEt + object2->pfIsoR04SumPhotonEt - 0.5*object2->pfIsoR04SumPUPt)) / object2->pt;
3816		}
3817	<	else{cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
3817	>	else{clog << "WARNING: invalid electron-muon pair variable '" << variable << "'\n"; value = -999;}
3818		value = applyFunction(function, value);
3819
3820		return value;
3821	<	}
3821	>	} // end electron-muon pair valueLookup
3822
3823	+
3824		//!electron-jet pair valueLookup
3825		double
3826		OSUAnalysis::valueLookup (const BNelectron* object1, const BNjet* object2, string variable, string function, string &stringValue){
#	Line 3092 \| Line 3829 \| OSUAnalysis::valueLookup (const BNelectr
3829
3830		if(variable == "deltaPhi") value = fabs(deltaPhi(object1->phi,object2->phi));
3831		else if(variable == "deltaEta") value = fabs(object1->eta - object2->eta);
3832	+	else if(variable == "jetEta") value = object2->eta;
3833	+	else if(variable == "jetPhi") value = object2->phi;
3834	+	else if(variable == "electronEta") value = object1->eta;
3835	+	else if(variable == "electronPhi") value = object1->phi;
3836		else if(variable == "deltaR") value = deltaR(object1->eta,object1->phi,object2->eta,object2->phi);
3837		else if(variable == "invMass"){
3838		TLorentzVector fourVector1(object1->px, object1->py, object1->pz, object1->energy);
#	Line 3113 \| Line 3854 \| OSUAnalysis::valueLookup (const BNelectr
3854		value = object1->charge*object2->charge;
3855		}
3856
3857	<	else{cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
3857	>	else{clog << "WARNING: invalid electron-jet pair variable '" << variable << "'\n"; value = -999;}
3858		value = applyFunction(function, value);
3859
3860		return value;
3861		}
3862
3863	+	//!electron-mcparticle pair valueLookup
3864	+	double
3865	+	OSUAnalysis::valueLookup (const BNelectron* object1, const BNmcparticle* object2, string variable, string function, string &stringValue){
3866	+
3867	+	double value = 0.0;
3868	+
3869	+	if(variable == "deltaPhi") value = fabs(deltaPhi(object1->phi,object2->phi));
3870	+	else if(variable == "deltaEta") value = fabs(object1->eta - object2->eta);
3871	+	else if(variable == "deltaR") value = deltaR(object1->eta,object1->phi,object2->eta,object2->phi);
3872	+	else if(variable == "threeDAngle")
3873	+	{
3874	+	TVector3 threeVector1(object1->px, object1->py, object1->pz);
3875	+	TVector3 threeVector2(object2->px, object2->py, object2->pz);
3876	+	value = (threeVector1.Angle(threeVector2));
3877	+	}
3878	+	else if(variable == "chargeProduct"){
3879	+	value = object1->charge*object2->charge;
3880	+	}
3881	+
3882	+	else{clog << "WARNING: invalid electron-mcparticle variable '" << variable << "'\n"; value = -999;}
3883	+	value = applyFunction(function, value);
3884	+
3885	+	return value;
3886	+	}
3887	+
3888	+
3889	+	//!photon-jet pair valueLookup
3890	+	double
3891	+	OSUAnalysis::valueLookup (const BNphoton* object1, const BNjet* object2, string variable, string function, string &stringValue){
3892	+
3893	+	double value = 0.0;
3894	+
3895	+	if(variable == "deltaPhi") value = fabs(deltaPhi(object1->phi,object2->phi));
3896	+	else if(variable == "deltaEta") value = fabs(object1->eta - object2->eta);
3897	+	else if(variable == "jetEta") value = object2->eta;
3898	+	else if(variable == "jetPhi") value = object2->phi;
3899	+	else if(variable == "photonEta") value = object1->eta;
3900	+	else if(variable == "photonPhi") value = object1->phi;
3901	+	else if(variable == "photonGenMotherId") value = object1->genMotherId;
3902	+	else if(variable == "deltaR") value = deltaR(object1->eta,object1->phi,object2->eta,object2->phi);
3903	+	else if(variable == "invMass"){
3904	+	TLorentzVector fourVector1(object1->px, object1->py, object1->pz, object1->energy);
3905	+	TLorentzVector fourVector2(object2->px, object2->py, object2->pz, object2->energy);
3906	+	value = (fourVector1 + fourVector2).M();
3907	+	}
3908	+	else if(variable == "pt"){
3909	+	TLorentzVector fourVector1(object1->px, object1->py, object1->pz, object1->energy);
3910	+	TLorentzVector fourVector2(object2->px, object2->py, object2->pz, object2->energy);
3911	+	value = (fourVector1 + fourVector2).Pt();
3912	+	}
3913	+	else if(variable == "threeDAngle")
3914	+	{
3915	+	TVector3 threeVector1(object1->px, object1->py, object1->pz);
3916	+	TVector3 threeVector2(object2->px, object2->py, object2->pz);
3917	+	value = (threeVector1.Angle(threeVector2));
3918	+	}
3919	+	else{clog << "WARNING: invalid photon-jet pair variable '" << variable << "'\n"; value = -999;}
3920	+	value = applyFunction(function, value);
3921	+
3922	+	return value;
3923	+	}
3924	+
3925	+	// track-jet pair valueLookup
3926	+	double
3927	+	OSUAnalysis::valueLookup (const BNtrack* object1, const BNjet* object2, string variable, string function, string &stringValue){
3928	+
3929	+	double value = 0.0;
3930	+
3931	+	if(variable == "deltaPhi") value = fabs(deltaPhi(object1->phi,object2->phi));
3932	+	else if(variable == "deltaR") value = deltaR(object1->eta,object1->phi,object2->eta,object2->phi);
3933	+
3934	+	else{clog << "WARNING: invalid track-jet pair variable '" << variable << "'\n"; value = -999;}
3935	+	value = applyFunction(function, value);
3936	+
3937	+	return value;
3938	+
3939	+	}
3940	+
3941	+
3942	+
3943	+	// met-jet pair valueLookup
3944	+	double
3945	+	OSUAnalysis::valueLookup (const BNmet* object1, const BNjet* object2, string variable, string function, string &stringValue){
3946	+
3947	+	double value = 0.0;
3948	+
3949	+	if(variable == "deltaPhi") value = fabs(deltaPhi(object1->phi,object2->phi));
3950	+
3951	+	else{clog << "WARNING: invalid met-jet pair variable '" << variable << "'\n"; value = -999;}
3952	+	value = applyFunction(function, value);
3953	+
3954	+	return value;
3955	+
3956	+	}
3957	+
3958	+
3959	+
3960		//!muon-jet pair valueLookup
3961		double
3962		OSUAnalysis::valueLookup (const BNmuon* object1, const BNjet* object2, string variable, string function, string &stringValue){
#	Line 3126 \| Line 3964 \| OSUAnalysis::valueLookup (const BNmuon*
3964		double value = 0.0;
3965
3966		if(variable == "deltaPhi") value = fabs(deltaPhi(object1->phi,object2->phi));
3967	<	else if(variable == "deltaEta") value = fabs(object1->eta - object2->eta);
3967	>	else if(variable == "jetEta") value = object2->eta;
3968	>	else if(variable == "relPFdBetaIso") value = (object1->pfIsoR04SumChargedHadronPt + max(0.0, object1->pfIsoR04SumNeutralHadronEt + object1->pfIsoR04SumPhotonEt - 0.5*object1->pfIsoR04SumPUPt)) / object1->pt;
3969	>	else if(variable == "jetPt") value = object2->pt;
3970	>	else if(variable == "jetPhi") value = object2->phi;
3971	>	else if(variable == "deltaPt") value = object1->pt - object2->pt;
3972	>	else if(variable == "muonEta") value = object1->eta;
3973	>	else if(variable == "muonPt") value = object1->pt;
3974	>	else if(variable == "muonPhi") value = object1->phi;
3975	>	else if(variable == "deltaEta") value = fabs(object1->eta - object2->eta);
3976		else if(variable == "deltaR") value = deltaR(object1->eta,object1->phi,object2->eta,object2->phi);
3977		else if(variable == "invMass"){
3978		TLorentzVector fourVector1(object1->px, object1->py, object1->pz, object1->energy);
#	Line 3148 \| Line 3994 \| OSUAnalysis::valueLookup (const BNmuon*
3994		value = object1->charge*object2->charge;
3995		}
3996
3997	<	else{cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
3997	>	else{clog << "WARNING: invalid muon-jet pair variable '" << variable << "'\n"; value = -999;}
3998		value = applyFunction(function, value);
3999
4000		return value;
4001	<	}
4001	>	} // end muon-jet pair valueLookup
4002
4003	+
4004	+	//!muon-event valueLookup
4005	+	double
4006	+	OSUAnalysis::valueLookup (const BNmuon* object1, const BNevent* object2, string variable, string function, string &stringValue){
4007	+
4008	+	double value = 0.0;
4009	+
4010	+	if(variable == "muonEta") value = object1->eta;
4011	+	else if(variable == "muonPt") value = object1->pt;
4012	+	else if(variable == "muonPhi") value = object1->phi;
4013	+	else if(variable == "Ht") value = getHt(jets.product());
4014	+	else if(variable == "pthat") value = object2->pthat;
4015	+	else if(variable == "relPFdBetaIso") value = (object1->pfIsoR04SumChargedHadronPt + max(0.0, object1->pfIsoR04SumNeutralHadronEt + object1->pfIsoR04SumPhotonEt - 0.5*object1->pfIsoR04SumPUPt)) / object1->pt;
4016	+	else{clog << "WARNING: invalid muon-event pair variable '" << variable << "'\n"; value = -999;}
4017	+	value = applyFunction(function, value);
4018	+
4019	+	return value;
4020	+	}
4021		//!jet-jet pair valueLookup
4022		double
4023		OSUAnalysis::valueLookup (const BNjet* object1, const BNjet* object2, string variable, string function, string &stringValue){
#	Line 3162 \| Line 4026 \| *OSUAnalysis::valueLookup (const BNjet o**
4026
4027		if(variable == "deltaPhi") value = fabs(deltaPhi(object1->phi,object2->phi));
4028		else if(variable == "deltaEta") value = fabs(object1->eta - object2->eta);
4029	<	else if(variable == "absDeltaPt") value = fabs(object1->pt - object2->pt);
4029	>	else if(variable == "deltaPt") value = object1->pt - object2->pt;
4030		else if(variable == "deltaR") value = deltaR(object1->eta,object1->phi,object2->eta,object2->phi);
4031		else if(variable == "invMass"){
4032		TLorentzVector fourVector1(object1->px, object1->py, object1->pz, object1->energy);
#	Line 3184 \| Line 4048 \| *OSUAnalysis::valueLookup (const BNjet o**
4048		value = object1->charge*object2->charge;
4049		}
4050
4051	<	else{cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
4051	>	else{clog << "WARNING: invalid jet-jet pair variable '" << variable << "'\n"; value = -999;}
4052		value = applyFunction(function, value);
4053
4054		return value;
4055		}
4056	+
4057		//!electron-track pair valueLookup
4058		double
4059		OSUAnalysis::valueLookup (const BNelectron* object1, const BNtrack* object2, string variable, string function, string &stringValue){
#	Line 3199 \| Line 4064 \| OSUAnalysis::valueLookup (const BNelectr
4064		if(variable == "deltaPhi") value = fabs(deltaPhi(object1->phi,object2->phi));
4065		else if(variable == "deltaEta") value = fabs(object1->eta - object2->eta);
4066		else if(variable == "deltaR") value = deltaR(object1->eta,object1->phi,object2->eta,object2->phi);
4067	+	else if(variable == "deltaRLooseMvaId") {
4068	+	// only consider electrons that pass "loose MVA id", i.e., mvaNonTrigV0 > 0;
4069	+	// otherwise return very large value (99)
4070	+	if (object1->mvaNonTrigV0>0) value = deltaR(object1->eta,object1->phi,object2->eta,object2->phi);
4071	+	else value = 99.;
4072	+	}
4073		else if(variable == "invMass"){
4074		fourVector1.SetPtEtaPhiM(object1->pt, object1->eta, object1->phi, electronMass);
4075		fourVector2.SetPtEtaPhiM(object2->pt, object2->eta, object2->phi, electronMass );
#	Line 3208 \| Line 4079 \| OSUAnalysis::valueLookup (const BNelectr
4079		else if(variable == "chargeProduct"){
4080		value = object1->charge*object2->charge;
4081		}
4082	<	else{std::cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
4082	>	else{clog << "WARNING: invalid electron-track pair variable '" << variable << "'\n"; value = -999;}
4083		value = applyFunction(function, value);
4084		return value;
4085
#	Line 3218 \| Line 4089 \| OSUAnalysis::valueLookup (const BNelectr
4089		//!muon-track pair valueLookup
4090		double
4091		OSUAnalysis::valueLookup (const BNmuon* object1, const BNtrack* object2, string variable, string function, string &stringValue){
3221	–	double pionMass = 0.140;
3222	–	double muonMass = 0.106;
4092		double value = 0.0;
3224	–	TLorentzVector fourVector1(0, 0, 0, 0);
3225	–	TLorentzVector fourVector2(0, 0, 0, 0);
4093		if(variable == "deltaPhi") value = fabs(deltaPhi(object1->phi,object2->phi));
4094		else if(variable == "deltaEta") value = fabs(object1->eta - object2->eta);
4095		else if(variable == "deltaR") value = deltaR(object1->eta,object1->phi,object2->eta,object2->phi);
4096	+	else if(variable == "deltaRLooseID") {
4097	+	// only consider muons that pass looseId criteria; otherwise return very large value (99.)
4098	+	string empty = "";
4099	+	double isLooseId = valueLookup(object1, "looseID", "", empty);
4100	+	if (isLooseId) value = deltaR(object1->eta,object1->phi,object2->eta,object2->phi);
4101	+	else value = 99.;
4102	+	}
4103	+	else if(variable == "deltaRGlobalMuon") {
4104	+	// only consider muons that pass looseId criteria; otherwise return very large value (99.)
4105	+	if (object1->isGlobalMuon) value = deltaR(object1->eta,object1->phi,object2->eta,object2->phi);
4106	+	else value = 99.;
4107	+	}
4108		else if(variable == "invMass"){
4109	+	double pionMass = 0.140;
4110	+	double muonMass = 0.106;
4111	+	TLorentzVector fourVector1(0, 0, 0, 0);
4112	+	TLorentzVector fourVector2(0, 0, 0, 0);
4113		fourVector1.SetPtEtaPhiM(object1->pt, object1->eta, object1->phi, muonMass);
4114		fourVector2.SetPtEtaPhiM(object2->pt, object2->eta, object2->phi, pionMass );
3232	–
4115		value = (fourVector1 + fourVector2).M();
4116		}
4117		else if(variable == "chargeProduct"){
4118		value = object1->charge*object2->charge;
4119		}
4120
4121	<	else{std::cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
4121	>	else{clog << "WARNING: invalid muon-track pair variable '" << variable << "'\n"; value = -999;}
4122		value = applyFunction(function, value);
4123		return value;
4124		}
#	Line 3258 \| Line 4140 \| *OSUAnalysis::valueLookup (const BNtau o**
4140		value = object1->charge*object2->charge;
4141		}
4142
4143	<	else{std::cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
4143	>	else{clog << "WARNING: invalid tau-tau pair variable '" << variable << "'\n"; value = -999;}
4144		value = applyFunction(function, value);
4145		return value;
4146		}
#	Line 3280 \| Line 4162 \| OSUAnalysis::valueLookup (const BNmuon*
4162		value = object1->charge*object2->charge;
4163		}
4164
4165	<	else{std::cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
4165	>	else{clog << "WARNING: invalid muon-tau pair variable '" << variable << "'\n"; value = -999;}
4166		value = applyFunction(function, value);
4167		return value;
4168		}
#	Line 3291 \| Line 4173 \| *OSUAnalysis::valueLookup (const BNtau o**
4173		double value = 0.0;
4174		if(variable == "deltaPhi") value = fabs(deltaPhi(object1->phi,object2->phi));
4175		else if(variable == "deltaR") value = deltaR(object1->eta,object1->phi,object2->eta,object2->phi);
4176	+	else if(variable == "deltaRLooseHadronicID") {
4177	+	// only consider tau's that pass the loose hadronic ID criteria; otherwise return very large value (99)
4178	+	string empty = "";
4179	+	double isLooseHadronicID = valueLookup(object1, "looseHadronicID", "", empty);
4180	+
4181	+	if (isLooseHadronicID) value = deltaR(object1->eta,object1->phi,object2->eta,object2->phi);
4182	+	else value = 99.;
4183	+	}
4184	+	else if(variable == "deltaEta") value = fabs(object1->eta - object2->eta);
4185	+	else if(variable == "invMass"){
4186	+	double tauMass = 1.777; // PDG 2010
4187	+	double pionMass = 0.140; // PDG 2010
4188	+	TLorentzVector fourVector1(0, 0, 0, 0);
4189	+	TLorentzVector fourVector2(0, 0, 0, 0);
4190	+	fourVector1.SetPtEtaPhiM(object1->pt, object1->eta, object1->phi, tauMass);
4191	+	fourVector2.SetPtEtaPhiM(object2->pt, object2->eta, object2->phi, pionMass );
4192	+	value = (fourVector1 + fourVector2).M();
4193	+	}
4194		else if(variable == "chargeProduct"){
4195		value = object1->charge*object2->charge;
4196		}
4197
4198	<	else{std::cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
4198	>	else{clog << "WARNING: invalid tau-track pair variable '" << variable << "'\n"; value = -999;}
4199		value = applyFunction(function, value);
4200		return value;
4201		}
#	Line 3315 \| Line 4215 \| OSUAnalysis::valueLookup (const BNtrack*
4215		else if (variable == "caloTotDeltaRp5_RhoCorr") value = getTrkCaloTotRhoCorr(object1);
4216		else if (variable == "caloTotDeltaRp5ByP_RhoCorr") value = getTrkCaloTotRhoCorr(object1) / pMag;
4217
4218	<	else { cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999; }
4218	>	else { clog << "WARNING: invalid track-event pair variable '" << variable << "'\n"; value = -999; }
4219
4220		value = applyFunction(function, value);
4221
#	Line 3337 \| Line 4237 \| OSUAnalysis::valueLookup (const BNelectr
4237		stringValue = "none";
4238		}
4239
4240	<	else { cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999; }
4240	>	else { clog << "WARNING: invalid electron-trigobj variable '" << variable << "'\n"; value = -999; }
4241
4242		value = applyFunction(function, value);
4243
#	Line 3353 \| Line 4253 \| OSUAnalysis::valueLookup (const BNmuon*
4253
4254		if (variable == "deltaR") value = deltaR(object1->eta,object1->phi,object2->eta,object2->phi);
4255
4256	<	else { cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999; }
4256	>	else { clog << "WARNING: invalid muon-trigobj variable '" << variable << "'\n"; value = -999; }
4257
4258		value = applyFunction(function, value);
4259
#	Line 3456 \| Line 4356 \| OSUAnalysis::valueLookup (const BNstop*
4356		for(BNprimaryvertexCollection::const_iterator vertex = primaryvertexs->begin (); vertex != primaryvertexs->end (); vertex++){
4357		vertex_rank++;
4358		int dist = sqrt((object->vx-vertex->x)*(object->vx-vertex->x) + \
4359	<	(object->vy-vertex->y)*(object->vy-vertex->y) + \
4360	<	(object->vz-vertex->z)*(object->vz-vertex->z));
4359	>	(object->vy-vertex->y)*(object->vy-vertex->y) + \
4360	>	(object->vz-vertex->z)*(object->vz-vertex->z));
4361
4362		if(abs(dist) < abs(minDistToVertex)){
4363		value = vertex_rank;
#	Line 3466 \| Line 4366 \| OSUAnalysis::valueLookup (const BNstop*
4366		}
4367		}
4368
4369	+	else if (variable == "decaysToTau"){
4370	+	value = abs (object->daughter0Id) == 15 \|\| abs (object->daughter1Id) == 15;
4371	+	}
4372	+
4373
4374
4375
4376	<	else { cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999; }
4376	>	else { clog << "WARNING: invalid stop variable '" << variable << "'\n"; value = -999; }
4377
4378		value = applyFunction(function, value);
4379
4380		return value;
4381
4382	<	}
4382	>	} // end stop valueLookup
4383	>
4384
4385
4386
#	Line 3493 \| Line 4398 \| OSUAnalysis::getTrkIsIso (const BNtrack*
4398
4399		}
4400
4401	+	//calculate the scalar sum of Jet Pt in the event.
4402	+	double
4403	+	OSUAnalysis::getHt (const BNjetCollection* jetColl){
4404	+	double Ht = 0;
4405	+	for(BNjetCollection::const_iterator jet = jetColl->begin(); jet !=jetColl->end(); jet++){
4406	+	Ht += abs(jet->pt);
4407	+	}
4408	+	return Ht;
4409	+	}
4410
4411		double
4412		OSUAnalysis::getTrkPtRes (const BNtrack* track1){
#	Line 3530 \| Line 4444 \| OSUAnalysis::getTrkCaloTotRhoCorr(const
4444		// Return the pile-up (rho) corrected isolation energy, i.e., the total calorimeter energy around the candidate track.
4445		if (!useTrackCaloRhoCorr_) return -99;
4446		// if (!rhokt6CaloJetsHandle_) {
4447	<	// cout << "ERROR [getTrkCaloTotRhoCorr]: The collection rhokt6CaloJetsHandle is not available!" << endl;
4447	>	// clog << "ERROR [getTrkCaloTotRhoCorr]: The collection rhokt6CaloJetsHandle is not available!" << endl;
4448		// return -99;
4449		// }
4450		double radDeltaRCone = 0.5;
#	Line 3541 \| Line 4455 \| OSUAnalysis::getTrkCaloTotRhoCorr(const
4455
4456		}
4457
4458	+	double
4459	+	OSUAnalysis::getTrkDepTrkRp5RhoCorr(const BNtrack* track) {
4460	+	// Return the pile-up (rho) corrected isolation energy, i.e., the total calorimeter energy around the candidate track.
4461	+	if (!useTrackCaloRhoCorr_) return -99;
4462	+	// if (!rhokt6CaloJetsHandle_) {
4463	+	// clog << "ERROR [getTrkCaloTotRhoCorr]: The collection rhokt6CaloJetsHandle is not available!" << endl;
4464	+	// return -99;
4465	+	// }
4466	+	double radDeltaRCone = 0.5;
4467	+	double rhoCorr_kt6CaloJets = rhokt6CaloJetsHandle_ TMath::Pi() * pow(radDeltaRCone, 2); // Define effective area as pi*r^2, where r is radius of DeltaR cone.
4468	+	double rawDepTrkRp5 = track->depTrkRp5;
4469	+	double depTrkRp5RhoCorr = TMath::Max(0., rawDepTrkRp5 - rhoCorr_kt6CaloJets);
4470	+	return depTrkRp5RhoCorr;
4471	+
4472	+	}
4473	+
4474	+	double
4475	+	OSUAnalysis::getTrkDepTrkRp3RhoCorr(const BNtrack* track) {
4476	+	// Return the pile-up (rho) corrected isolation energy, i.e., the total calorimeter energy around the candidate track.
4477	+	if (!useTrackCaloRhoCorr_) return -99;
4478	+	// if (!rhokt6CaloJetsHandle_) {
4479	+	// clog << "ERROR [getTrkCaloTotRhoCorr]: The collection rhokt6CaloJetsHandle is not available!" << endl;
4480	+	// return -99;
4481	+	// }
4482	+	double radDeltaRCone = 0.3;
4483	+	// Define effective area as pi*r^2, where r is radius of DeltaR cone
4484	+	double rhoCorr_kt6CaloJets = rhokt6CaloJetsHandle_ TMath::Pi() * pow(radDeltaRCone, 2);
4485	+	double rawDepTrkRp3 = track->depTrkRp3;
4486	+	double depTrkRp3RhoCorr = TMath::Max(0., rawDepTrkRp3 - rhoCorr_kt6CaloJets);
4487	+	return depTrkRp3RhoCorr;
4488	+
4489	+	}
4490	+
4491
4492
4493
#	Line 3552 \| Line 4499 \| OSUAnalysis::WriteDeadEcal (){
4499		double etaEcal, phiEcal;
4500		ifstream DeadEcalFile(deadEcalFile_);
4501		if(!DeadEcalFile) {
4502	<	cout << "Error: DeadEcalFile has not been found." << endl;
4502	>	clog << "Error: DeadEcalFile has not been found." << endl;
4503		return;
4504		}
4505		if(DeadEcalVec.size()!= 0){
4506	<	cout << "Error: DeadEcalVec has a nonzero size" << endl;
4506	>	clog << "Error: DeadEcalVec has a nonzero size" << endl;
4507		return;
4508		}
4509		while(!DeadEcalFile.eof())
#	Line 3567 \| Line 4514 \| OSUAnalysis::WriteDeadEcal (){
4514		newChan.phiEcal = phiEcal;
4515		DeadEcalVec.push_back(newChan);
4516		}
4517	<	if(DeadEcalVec.size() == 0) cout << "Warning: No dead Ecal channels have been found." << endl;
4517	>	if(DeadEcalVec.size() == 0) clog << "Warning: No dead Ecal channels have been found." << endl;
4518		}
4519
4520		//if a track is found within dR<0.05 of a dead Ecal channel value = 1, otherwise value = 0
#	Line 3607 \| Line 4554 \| OSUAnalysis::applyFunction(string functi
4554		else if(function == "log") value = log10(value);
4555
4556		else if(function == "") value = value;
4557	<	else{cout << "WARNING: invalid function '" << function << "'\n";}
4557	>	else{clog << "WARNING: invalid function '" << function << "'\n";}
4558
4559		return value;
4560
#	Line 3617 \| Line 4564 \| OSUAnalysis::applyFunction(string functi
4564		template <class InputCollection>
4565		void OSUAnalysis::setObjectFlags(cut &currentCut, uint currentCutIndex, flagMap &individualFlags, flagMap &cumulativeFlags, InputCollection inputCollection, string inputType){
4566
4567	+	if (verbose_>2) clog << " Beginning setObjectFlags for cut " << currentCutIndex << ": " << currentCut.name
4568	+	<< ", inputType=" << inputType
4569	+	<< endl;
4570		if (currentCut.inputCollection.find("pair")!=string::npos) {
4571		string obj1, obj2;
4572		getTwoObjs(currentCut.inputCollection, obj1, obj2);
4573	+	if (verbose_>2) clog << " Two object types: " << obj1 << ", " << obj2 << endl;
4574		if (inputType==obj1 \|\|
4575	<	inputType==obj2) {
4575	>	inputType==obj2) {
4576		// Do not add a cut to individualFlags or cumulativeFlags, if the cut is on a paired collection,
4577		// and the inputType is a member of the pair.
4578		// The cut will instead be applied when the setObjectFlags() is called for the paired collection.
#	Line 3631 \| Line 4582 \| void OSUAnalysis::setObjectFlags(cut &cu
4582		}
4583		}
4584
4585	+	if (!inputCollection) cout << "ERROR: invalid input collection for inputType=" << inputType << endl;
4586	+
4587	+	if (verbose_>3) clog << " Collection size: " << inputCollection->size() << endl;
4588	+
4589		for (uint object = 0; object != inputCollection->size(); object++){
4590
4591	<	bool decision = true;//object passes if this cut doesn't cut on that type of object
4591	>	if (verbose_>4) clog << " Setting flags for object " << object << endl;
4592	>
4593	>	bool cutDecision = true;//object passes if this cut doesn't cut on that type of object
4594	>	bool plotDecision = true;
4595
4596		if(currentCut.inputCollection == inputType){
4597
#	Line 3645 \| Line 4603 \| void OSUAnalysis::setObjectFlags(cut &cu
4603		else subcutDecisions.push_back(evaluateComparison(stringValue,currentCut.comparativeOperators.at(subcutIndex),currentCut.cutStringValues.at(subcutIndex)));
4604
4605		}
4606	<	if(currentCut.numSubcuts == 1) decision = subcutDecisions.at(0);
4606	>	if(currentCut.numSubcuts == 1) cutDecision = subcutDecisions.at(0);
4607		else{
4608		bool tempDecision = true;
4609		for( int subcutIndex = 0;subcutIndex != currentCut.numSubcuts-1; subcutIndex++){
#	Line 3654 \| Line 4612 \| void OSUAnalysis::setObjectFlags(cut &cu
4612		else if(currentCut.logicalOperators.at(subcutIndex) == "\|"\|\| currentCut.logicalOperators.at(subcutIndex) == "\|\|")
4613		tempDecision = subcutDecisions.at(subcutIndex) \|\| subcutDecisions.at(subcutIndex+1);
4614		}
4615	<	decision = tempDecision;
4615	>	cutDecision = tempDecision;
4616		}
4617	+	//invert the cut if this cut is a veto
4618	+	if(currentCut.isVeto) cutDecision = !cutDecision;
4619	+	plotDecision = cutDecision;
4620		}
4621
4622	<	individualFlags.at(inputType).at(currentCutIndex).push_back(decision);
4622	>	individualFlags.at(inputType).at(currentCutIndex).push_back(make_pair(cutDecision,plotDecision));
4623
4624	<	//set flags for objects that pass each cut AND all the previous cuts
4625	<	bool previousCumulativeFlag = true;
4624	>	//set flags for objects that pass this cut AND all the previous cuts
4625	>	bool previousCumulativeCutFlag = true;
4626	>	for(uint previousCutIndex = 0; previousCutIndex != currentCutIndex; previousCutIndex++){
4627	>	if(previousCumulativeCutFlag && individualFlags.at(inputType).at(previousCutIndex).at(object).first) previousCumulativeCutFlag = true;
4628	>	else{ previousCumulativeCutFlag = false; break;}
4629	>	}
4630	>	previousCumulativeCutFlag = previousCumulativeCutFlag && cutDecision;
4631	>	bool previousCumulativePlotFlag = true;
4632		for(uint previousCutIndex = 0; previousCutIndex != currentCutIndex; previousCutIndex++){
4633	<	if(previousCumulativeFlag && individualFlags.at(inputType).at(previousCutIndex).at(object)) previousCumulativeFlag = true;
4634	<	else{ previousCumulativeFlag = false; break;}
4633	>	if(previousCumulativePlotFlag && individualFlags.at(inputType).at(previousCutIndex).at(object).second) previousCumulativePlotFlag = true;
4634	>	else{ previousCumulativePlotFlag = false; break;}
4635		}
4636	<	cumulativeFlags.at(inputType).at(currentCutIndex).push_back(previousCumulativeFlag && decision);
4636	>	previousCumulativePlotFlag = previousCumulativePlotFlag && plotDecision;
4637
4638	<	}
4638	>	cumulativeFlags.at(inputType).at(currentCutIndex).push_back(make_pair(previousCumulativeCutFlag,previousCumulativePlotFlag));
4639
4640	<	}
4640	>	} // for (uint object = 0; object != inputCollection->size(); object++){
4641
4642	+	} // end void OSUAnalysis::setObjectFlags
4643
3676	–	template <class InputCollection1, class InputCollection2>
3677	–	void OSUAnalysis::setObjectFlags(cut &currentCut, uint currentCutIndex, flagMap &individualFlags, flagMap &cumulativeFlags, \
3678	–	InputCollection1 inputCollection1, InputCollection2 inputCollection2, vector<bool> flags1, vector<bool> flags2, string inputType){
4644
4645	+	template <class InputCollection1, class InputCollection2>
4646	+	void OSUAnalysis::setObjectFlags(cut &currentCut, uint currentCutIndex, flagMap &individualFlags, flagMap &cumulativeFlags,
4647	+	InputCollection1 inputCollection1, InputCollection2 inputCollection2, string inputType){
4648	+	// This function sets the flags for the paired object collection.
4649	+	// If the cut is applying on the given paired object collection, then the flags for the single object collections are also set.
4650	+	// If not, then the flags for the paired object collection are taken as the AND of the flags for each single object collection.
4651	+
4652	+	if (verbose_>2) clog << " Beginning setObjectFlags for cut=" << currentCut.name
4653	+	<< ", inputType=" << inputType
4654	+	<< endl;
4655
4656		bool sameObjects = false;
4657	<	if(typeid(InputCollection1).name() == typeid(InputCollection2).name()) sameObjects = true;
4657	>	if(typeid(InputCollection1).name() == typeid(InputCollection2).name()) sameObjects = true; // FIXME: is sameObjects just the not of isTwoTypesOfObject? If so, it's redundant.
4658
4659		// Get the strings for the two objects that make up the pair.
4660		string obj1Type, obj2Type;
#	Line 3691 \| Line 4666 \| void OSUAnalysis::setObjectFlags(cut &cu
4666		// Set them to true later, if any paired object passes (in which case both of its constituents should pass).
4667		if (currentCut.inputCollection == inputType) {
4668		for (uint object1 = 0; object1 != inputCollection1->size(); object1++) {
4669	<	individualFlags.at(obj1Type).at(currentCutIndex).push_back(false);
4670	<	cumulativeFlags.at(obj1Type).at(currentCutIndex).push_back(false);
4669	>	individualFlags.at(obj1Type).at(currentCutIndex).push_back(make_pair(false,false));
4670	>	cumulativeFlags.at(obj1Type).at(currentCutIndex).push_back(make_pair(false,false));
4671		}
4672		if (isTwoTypesOfObject) { // Only initialize the second object if it is different from the first.
4673		for (uint object2 = 0; object2 != inputCollection2->size(); object2++) {
4674	<	individualFlags.at(obj2Type).at(currentCutIndex).push_back(false);
4675	<	cumulativeFlags.at(obj2Type).at(currentCutIndex).push_back(false);
4674	>	individualFlags.at(obj2Type).at(currentCutIndex).push_back(make_pair(false,false));
4675	>	cumulativeFlags.at(obj2Type).at(currentCutIndex).push_back(make_pair(false,false));
4676		}
4677		}
4678		}
#	Line 3710 \| Line 4685 \| void OSUAnalysis::setObjectFlags(cut &cu
4685		if(sameObjects && object1 >= object2) continue;//account for duplicate pairs if both collections are the same
4686
4687
4688	<	bool decision = true;//object passes if this cut doesn't cut on that type of object
4688	>	bool cutDecision = true;//object passes if this cut doesn't cut on that type of object
4689	>	bool plotDecision = true;
4690
4691	+	// Determine whether each pair passes the cut, only if inputCollection is the same as the inputType.
4692		if(currentCut.inputCollection == inputType){
4693
4694		vector<bool> subcutDecisions;
4695		for( int subcutIndex = 0; subcutIndex != currentCut.numSubcuts; subcutIndex++){
4696		string stringValue = "";
4697		double value = valueLookup(&inputCollection1->at(object1), &inputCollection2->at(object2), currentCut.variables.at(subcutIndex), currentCut.functions.at(subcutIndex), stringValue);
4698	+	if (verbose_>1) clog << currentCut.variables.at(subcutIndex) << " = " << value
4699	+	<< endl;
4700		if (stringValue == "") subcutDecisions.push_back(evaluateComparison(value,currentCut.comparativeOperators.at(subcutIndex),currentCut.cutValues.at(subcutIndex)));
4701		else subcutDecisions.push_back(evaluateComparison(stringValue,currentCut.comparativeOperators.at(subcutIndex),currentCut.cutStringValues.at(subcutIndex)));
4702		}
4703
4704	<	if(currentCut.numSubcuts == 1) decision = subcutDecisions.at(0);
4704	>	if(currentCut.numSubcuts == 1) cutDecision = subcutDecisions.at(0);
4705		else{
4706		bool tempDecision = subcutDecisions.at(0);
4707		for( int subcutIndex = 1; subcutIndex < currentCut.numSubcuts; subcutIndex++){
#	Line 3731 \| Line 4710 \| void OSUAnalysis::setObjectFlags(cut &cu
4710		else if(currentCut.logicalOperators.at(subcutIndex-1) == "\|"\|\| currentCut.logicalOperators.at(subcutIndex-1) == "\|\|")
4711		tempDecision = tempDecision \|\| subcutDecisions.at(subcutIndex);
4712		}
4713	<	decision = tempDecision;
4713	>	cutDecision = tempDecision;
4714		}
4715	+	//invert the cut if this cut is a veto
4716	+	if (currentCut.isVeto) cutDecision = !cutDecision;
4717	+	plotDecision = cutDecision;
4718	+
4719	+	if (verbose_>1) clog << " cutDecision = " << cutDecision
4720	+	<< "; for currentCut.inputCollection = " << currentCut.inputCollection
4721	+	<< "; object1 (" << obj1Type << ") = " << object1
4722	+	<< "; object2 (" << obj2Type << ") = " << object2
4723	+	<< endl;
4724	+
4725	+	if (cutDecision) { // only set the flags for the individual objects if the pair object is being cut on
4726	+	individualFlags.at(obj1Type).at(currentCutIndex).at(object1).first = true;
4727	+	individualFlags.at(obj2Type).at(currentCutIndex).at(object2).first = true;
4728	+	}
4729	+	if (plotDecision) { // only set the flags for the individual objects if the pair object is being cut on
4730	+	individualFlags.at(obj1Type).at(currentCutIndex).at(object1).second = true;
4731	+	individualFlags.at(obj2Type).at(currentCutIndex).at(object2).second = true;
4732	+	}
4733	+
4734	+
4735	+	} // if(currentCut.inputCollection == inputType){
4736	+
4737	+	// The individualFlags will be true if the inputCollection is not the same as the inputType.
4738	+	// They are also independent of the previous flags on the single objects.
4739	+	individualFlags.at(inputType).at(currentCutIndex).push_back(make_pair(cutDecision,plotDecision));
4740	+
4741	+
4742	+
4743	+	// ************************************
4744	+	// Determine cumulative flags
4745	+	// ************************************
4746	+	// determine whether this paired object passes this cut AND all previous cuts
4747	+	bool previousCumulativeCutFlag = true;
4748	+	for(uint previousCutIndex = 0; previousCutIndex != currentCutIndex; previousCutIndex++){
4749	+	if(previousCumulativeCutFlag && individualFlags.at(inputType).at(previousCutIndex).at(counter).first) previousCumulativeCutFlag = true;
4750	+	else{ previousCumulativeCutFlag = false; break;}
4751		}
4752	<	// if (decision) isPassObj1.at(object1) = true;
3738	<	// if (decision) isPassObj2.at(object2) = true;
3739	<	individualFlags.at(inputType).at(currentCutIndex).push_back(decision);
3740	<	if (decision && currentCut.inputCollection == inputType) { // only set the flags for the individual objects if the pair object is being cut on
3741	<	individualFlags.at(obj1Type).at(currentCutIndex).at(object1) = true;
3742	<	individualFlags.at(obj2Type).at(currentCutIndex).at(object2) = true;
3743	<	}
4752	>	previousCumulativeCutFlag = previousCumulativeCutFlag && cutDecision;
4753
4754	<	//set flags for objects that pass each cut AND all the previous cuts
3746	<	bool previousCumulativeFlag = true;
4754	>	bool previousCumulativePlotFlag = true;
4755		for(uint previousCutIndex = 0; previousCutIndex != currentCutIndex; previousCutIndex++){
4756	<	if(previousCumulativeFlag && individualFlags.at(inputType).at(previousCutIndex).at(counter)) previousCumulativeFlag = true;
4757	<	else{ previousCumulativeFlag = false; break;}
4756	>	if(previousCumulativePlotFlag && individualFlags.at(inputType).at(previousCutIndex).at(counter).second) previousCumulativePlotFlag = true;
4757	>	else{ previousCumulativePlotFlag = false; break;}
4758		}
4759	<	//apply flags for the components of the composite object as well
4760	<	bool currentCumulativeFlag = true;
4761	<	if(flags1.size() == 0 && flags2.size() == 0) currentCumulativeFlag = previousCumulativeFlag && decision;
4762	<	else if(flags1.size() == 0) currentCumulativeFlag = previousCumulativeFlag && decision && flags2.at(object2);
4763	<	else if(flags2.size() == 0) currentCumulativeFlag = previousCumulativeFlag && decision && flags1.at(object1);
4764	<	else currentCumulativeFlag = previousCumulativeFlag && decision && flags1.at(object1) && flags2.at(object2);
4765	<	cumulativeFlags.at(inputType).at(currentCutIndex).push_back(currentCumulativeFlag);
4766	<	if (currentCumulativeFlag && currentCut.inputCollection == inputType) { // only set the flags for the individual objects if the pair object is being cut on
4767	<	cumulativeFlags.at(obj1Type).at(currentCutIndex).at(object1) = true && getPreviousCumulativeFlags(currentCutIndex, individualFlags, obj1Type, object1);
4768	<	cumulativeFlags.at(obj2Type).at(currentCutIndex).at(object2) = true && getPreviousCumulativeFlags(currentCutIndex, individualFlags, obj2Type, object2);
4759	>	previousCumulativePlotFlag = previousCumulativePlotFlag && plotDecision;
4760	>
4761	>	// Get the index for the flags of each of the single objects in the pair. Usually this is the index of the previous cut, i.e., currentCutIndex-1.
4762	>	int cutIdxFlagsObj1 = max(int(currentCutIndex-1),0);
4763	>	int cutIdxFlagsObj2 = max(int(currentCutIndex-1),0);
4764	>	// If the inputCollection of the cut is not equal to the inputType but the inputCollection includes objects that are contained in inputType, then use the currentCutIndex for those collections.
4765	>	// For example, if the inputType is jet-jet pairs, and the inputCollection is track-jet pairs, then use currentCutIndex for cutIdxFlagsObj{1,2}, i.e., for both jets.
4766	>	// For example, if the inputType is jets, and the inputCollection is track-jet pairs, then use currentCutIndex for cutIdxFlagsObj2 (jets) and currentCutIndex-1 for cutIdxFlagsObj1 (tracks).
4767	>	if (currentCut.inputCollection != inputType) {
4768	>	if (currentCut.inputCollection.find(obj1Type)!=string::npos) cutIdxFlagsObj1 = currentCutIndex;
4769	>	if (currentCut.inputCollection.find(obj2Type)!=string::npos) cutIdxFlagsObj2 = currentCutIndex;
4770	>	}
4771	>	flagPair flags1 = cumulativeFlags.at(obj1Type).at(cutIdxFlagsObj1); // flag for input collection 1
4772	>	flagPair flags2 = cumulativeFlags.at(obj2Type).at(cutIdxFlagsObj2); // flag for input collection 2
4773	>
4774	>	// The cumulative flag is only true if the paired object cumulative flag is true, and if the single object cumulative flags are true.
4775	>	bool currentCumulativeCutFlag = true;
4776	>	bool currentCumulativePlotFlag = true;
4777	>	if(flags1.size() == 0 && flags2.size() == 0) currentCumulativeCutFlag = previousCumulativeCutFlag;
4778	>	else if(flags1.size() == 0) currentCumulativeCutFlag = previousCumulativeCutFlag && flags2.at(object2).first;
4779	>	else if(flags2.size() == 0) currentCumulativeCutFlag = previousCumulativeCutFlag && flags1.at(object1).first;
4780	>	else currentCumulativeCutFlag = previousCumulativeCutFlag && flags1.at(object1).first && flags2.at(object2).first;
4781	>
4782	>	if(flags1.size() == 0 && flags2.size() == 0) currentCumulativePlotFlag = previousCumulativePlotFlag;
4783	>	else if(flags1.size() == 0) currentCumulativePlotFlag = previousCumulativePlotFlag && flags2.at(object2).second;
4784	>	else if(flags2.size() == 0) currentCumulativePlotFlag = previousCumulativePlotFlag && flags1.at(object1).second;
4785	>	else currentCumulativePlotFlag = previousCumulativePlotFlag && flags1.at(object1).first && flags2.at(object2).second;
4786	>
4787	>	cumulativeFlags.at(inputType).at(currentCutIndex).push_back(make_pair(currentCumulativeCutFlag,currentCumulativePlotFlag)); // Set the flag for the paired object
4788	>
4789	>
4790	>	if (currentCumulativeCutFlag && currentCut.inputCollection == inputType) { // Set the flags for the individual objects if the paired object is being cut on.
4791	>	cumulativeFlags.at(obj1Type).at(currentCutIndex).at(object1).first = true && getPreviousCumulativeFlags(currentCutIndex, individualFlags, obj1Type, object1, "cut");
4792	>	cumulativeFlags.at(obj2Type).at(currentCutIndex).at(object2).first = true && getPreviousCumulativeFlags(currentCutIndex, individualFlags, obj2Type, object2, "cut");
4793	>	cumulativeFlags.at(obj1Type).at(currentCutIndex).at(object1).second = true && getPreviousCumulativeFlags(currentCutIndex, individualFlags, obj1Type, object1, "plot");
4794	>	cumulativeFlags.at(obj2Type).at(currentCutIndex).at(object2).second = true && getPreviousCumulativeFlags(currentCutIndex, individualFlags, obj2Type, object2, "plot");
4795	>
4796	>	if (verbose_>1) clog << " previousCumulativeCutFlag for object1 = " << getPreviousCumulativeFlags(currentCutIndex, individualFlags, obj2Type, object1, "cut") << endl;
4797	>	if (verbose_>1) clog << " previousCumulativeCutFlag for object2 = " << getPreviousCumulativeFlags(currentCutIndex, individualFlags, obj2Type, object2, "cut") << endl;
4798	>
4799		}
4800	+
4801		counter++;
4802
4803		} // end for (uint object2 = 0; object2 != inputCollection2->size(); object2++)
4804		} // end for (uint object1 = 0; object1 != inputCollection1->size(); object1++)
4805
4806	<	}
4806	>	} // end void OSUAnalysis::setObjectFlags
4807
4808
4809	<	bool OSUAnalysis::getPreviousCumulativeFlags(uint currentCutIndex, flagMap &individualFlags, string obj1Type, uint object1) {
4809	>	bool OSUAnalysis::getPreviousCumulativeFlags(uint currentCutIndex, flagMap &individualFlags, string obj1Type, uint object1, string flagType) {
4810		// Return true iff for the collection obj1Type, the element with index object1 has individal flags set to true for
4811		// all cuts up to currentCutIndex
4812		bool previousCumulativeFlag = true;
4813		for (uint previousCutIndex = 0; previousCutIndex < currentCutIndex; previousCutIndex++) {
4814	<	if (previousCumulativeFlag && individualFlags.at(obj1Type).at(previousCutIndex).at(object1)) previousCumulativeFlag = true;
4814	>	bool tempFlag = false;
4815	>	if(flagType == "cut") tempFlag = individualFlags.at(obj1Type).at(previousCutIndex).at(object1).first;
4816	>	else if(flagType == "plot") tempFlag = individualFlags.at(obj1Type).at(previousCutIndex).at(object1).second;
4817	>
4818	>	if (previousCumulativeFlag && tempFlag) previousCumulativeFlag = true;
4819		else {
4820		previousCumulativeFlag = false; break;
4821		}
#	Line 3782 \| Line 4825 \| bool OSUAnalysis::getPreviousCumulativeF
4825
4826
4827
4828	+
4829		template <class InputCollection>
4830	<	void OSUAnalysis::assignTreeBranch(BranchSpecs parameters, InputCollection inputCollection, vector<bool> flags){
4831	<	// This function is similar to fill1DHistogram(), but instead of filling a histogram it assigns a value to a variable for the BNTree
4830	>	void OSUAnalysis::assignTreeBranch(BranchSpecs parameters, InputCollection inputCollection, flagPair flags){
4831	>	// This function is similar to fill1DHistogram(), but instead of filling a histogram it assigns a value to a variable for the BNTree
4832
4833	<	for (uint object = 0; object != inputCollection->size(); object++){
4833	>	if (BNTreeBranchVals_.count(parameters.name)==0) clog << "Error[assignTreeBranch]: trying to assign value to " << parameters.name << " that does not have a branch set up. Will likely seg fault." << endl;
4834	>	for (uint object = 0; object != inputCollection->size(); object++) {
4835
4836	<	if (!plotAllObjectsInPassingEvents_ && !flags.at(object)) continue;
4836	>	if (!plotAllObjectsInPassingEvents_ && !flags.at(object).second) continue;
4837
4838	<	string inputVariable = parameters.inputVariable;
4838	>	string inputVariable = parameters.inputVariable;
4839		string function = "";
4840	<	string stringValue = "";
4841	<	double value = valueLookup(&inputCollection->at(object), inputVariable, function, stringValue);
4842	<	BNTreeBranchVals_.at(parameters.name).push_back(value);
4840	>	string stringValue = "";
4841	>	double value = valueLookup(&inputCollection->at(object), inputVariable, function, stringValue);
4842	>	BNTreeBranchVals_.at(parameters.name).push_back(value);
4843
4844		}
4845		}
4846
4847
4848		template <class InputCollection>
4849	<	void OSUAnalysis::fill1DHistogram(TH1* histo, histogram parameters, InputCollection inputCollection,vector<bool> flags, double scaleFactor){
4849	>	void OSUAnalysis::fill1DHistogram(TH1* histo, histogram parameters, InputCollection inputCollection, flagPair flags, double scaleFactor){
4850	>
4851	>	if (verbose_>2) clog << " Filling histogram for " << parameters.name << endl;
4852
4853		for (uint object = 0; object != inputCollection->size(); object++){
4854
4855	<	if(!plotAllObjectsInPassingEvents_ && !flags.at(object)) continue;
4855	>	if(!plotAllObjectsInPassingEvents_ && !flags.at(object).second) continue;
4856
4857		string currentString = parameters.inputVariables.at(0);
4858		string inputVariable = "";
#	Line 3817 \| Line 4864 \| *void OSUAnalysis::fill1DHistogram(TH1 h**
4864		function = currentString.substr(0,currentString.find("("));//function comes before the "("
4865		inputVariable = currentString.substr(currentString.find("(")+1);//get rest of string
4866		inputVariable = inputVariable.substr(0,inputVariable.size()-1);//remove trailing ")"
4867	<	}
4867	>	}
4868
4869	<	string stringValue = "";
4870	<	double value = valueLookup(&inputCollection->at(object), inputVariable, function, stringValue);
4871	<	histo->Fill(value,scaleFactor);
4869	>	string stringValue = "";
4870	>	double value = valueLookup(&inputCollection->at(object), inputVariable, function, stringValue);
4871	>	histo->Fill(value,scaleFactor);
4872
4873		if (printEventInfo_) {
4874		// Write information about event to screen, for testing purposes.
4875	<	cout << " Info for event: value for histogram " << histo->GetName() << ": " << value << endl;
4875	>	clog << " Info for event: value for histogram " << histo->GetName() << ": " << value << " (object number " << object << ")" << endl;
4876		}
4877
4878		}
4879		}
4880
4881		template <class InputCollection1, class InputCollection2>
4882	<	void OSUAnalysis::fill1DHistogram(TH1* histo, histogram parameters, InputCollection1 inputCollection1, InputCollection2 inputCollection2, vector<bool> flags1, vector<bool> flags2, vector<bool> pairFlags, double scaleFactor){
4882	>	void OSUAnalysis::fill1DHistogram(TH1* histo, histogram parameters, InputCollection1 inputCollection1, InputCollection2 inputCollection2,
4883	>	flagPair pairFlags, double scaleFactor){
4884
4885		bool sameObjects = false;
4886		if(typeid(InputCollection1).name() == typeid(InputCollection2).name()) sameObjects = true;
#	Line 3844 \| Line 4892 \| *void OSUAnalysis::fill1DHistogram(TH1 h**
4892		if(sameObjects && object1 >= object2) continue;//account for duplicate pairs if both collections are the same
4893
4894		pairCounter++;
4895	<	//only take objects which have passed all cuts and pairs which have passed all cuts
3848	<	if(!plotAllObjectsInPassingEvents_ && !flags1.at(object1)) continue;
3849	<	if(!plotAllObjectsInPassingEvents_ && !flags2.at(object2)) continue;
3850	<	if(!plotAllObjectsInPassingEvents_ && !pairFlags.at(pairCounter)) continue;
4895	>	if(!plotAllObjectsInPassingEvents_ && !pairFlags.at(pairCounter).second) continue;
4896
4897		string currentString = parameters.inputVariables.at(0);
4898		string inputVariable = "";
#	Line 3865 \| Line 4910 \| *void OSUAnalysis::fill1DHistogram(TH1 h**
4910		double value = valueLookup(&inputCollection1->at(object1), &inputCollection2->at(object2), inputVariable, function, stringValue);
4911		histo->Fill(value,scaleFactor);
4912
4913	+	if (printEventInfo_) {
4914	+	// Write information about event to screen, for testing purposes.
4915	+	clog << " Info for event: value for histogram " << histo->GetName() << ": " << value
4916	+	<< " (object1 number " << object1 << "), "
4917	+	<< " (object2 number " << object2 << ")"
4918	+	<< endl;
4919	+	}
4920	+
4921		}
4922		}
4923
#	Line 3872 \| Line 4925 \| *void OSUAnalysis::fill1DHistogram(TH1 h**
4925
4926
4927		template <class InputCollection>
4928	<	void OSUAnalysis::fill2DHistogram(TH2* histo, histogram parameters, InputCollection inputCollection,vector<bool> flags, double scaleFactor){
4928	>	void OSUAnalysis::fill2DHistogram(TH2* histo, histogram parameters, InputCollection inputCollection, flagPair flags, double scaleFactor){
4929
4930		for (uint object = 0; object != inputCollection->size(); object++){
4931
4932	<	if(!plotAllObjectsInPassingEvents_ && !flags.at(object)) continue;
4932	>	if(!plotAllObjectsInPassingEvents_ && !flags.at(object).second) continue;
4933
4934		string stringValue = "";
4935		string currentString = parameters.inputVariables.at(0);
#	Line 3913 \| Line 4966 \| *void OSUAnalysis::fill2DHistogram(TH2 h**
4966		}
4967
4968		template <class InputCollection1, class InputCollection2>
4969	<	void OSUAnalysis::fill2DHistogram(TH2* histo, histogram parameters, InputCollection1 inputCollection1, InputCollection2 inputCollection2, vector<bool> flags1, vector<bool> flags2, vector<bool> pairFlags, double scaleFactor){
4969	>	void OSUAnalysis::fill2DHistogram(TH2* histo, histogram parameters, InputCollection1 inputCollection1, InputCollection2 inputCollection2,
4970	>	flagPair pairFlags, double scaleFactor){
4971
4972		bool sameObjects = false;
4973		if(typeid(InputCollection1).name() == typeid(InputCollection2).name()) sameObjects = true;
#	Line 3926 \| Line 4980 \| *void OSUAnalysis::fill2DHistogram(TH2 h**
4980
4981		pairCounter++;
4982
4983	<	//only take objects which have passed all cuts and pairs which have passed all cuts
3930	<	if(!plotAllObjectsInPassingEvents_ && !flags1.at(object1)) continue;
3931	<	if(!plotAllObjectsInPassingEvents_ && !flags2.at(object2)) continue;
3932	<	if(!plotAllObjectsInPassingEvents_ && !pairFlags.at(pairCounter)) continue;
4983	>	if(!plotAllObjectsInPassingEvents_ && !pairFlags.at(pairCounter).second) continue;
4984
4985		string stringValue = "";
4986		string currentString = parameters.inputVariables.at(0);
#	Line 3977 \| Line 5028 \| int OSUAnalysis::getGenMatchedParticleIn
5028
5029		double currentDeltaR = deltaR(object->eta,object->phi,mcparticle->eta,mcparticle->phi);
5030		if(currentDeltaR > 0.05) continue;
5031	<	// cout << setprecision(3) << setw(20)
5031	>	// clog << setprecision(3) << setw(20)
5032		// << "\tcurrentParticle: eta = " << mcparticles->at(mcparticle - mcparticles->begin()).eta
5033		// << setw(20)
5034		// << "\tphi = " << mcparticles->at(mcparticle - mcparticles->begin()).phi
#	Line 3996 \| Line 5047 \| int OSUAnalysis::getGenMatchedParticleIn
5047		}
5048
5049		}
5050	<	// if(bestMatchDeltaR != 999) cout << "bestMatch: deltaR = " << bestMatchDeltaR << " id = " << mcparticles->at(bestMatchIndex).id << " motherId = " << mcparticles->at(bestMatchIndex).motherId << endl;
5051	<	// else cout << "no match found..." << endl;
5050	>	// if(bestMatchDeltaR != 999) clog << "bestMatch: deltaR = " << bestMatchDeltaR << " id = " << mcparticles->at(bestMatchIndex).id << " motherId = " << mcparticles->at(bestMatchIndex).motherId << endl;
5051	>	// else clog << "no match found..." << endl;
5052		return bestMatchIndex;
5053
5054		}
#	Line 4089 \| Line 5140 \| OSUAnalysis::chosenVertex ()
5140		{
5141		const BNprimaryvertex *chosenVertex = 0;
5142		if(cumulativeFlags.find ("primaryvertexs") != cumulativeFlags.end ()){
5143	<	vector<bool> vertexFlags;
5143	>	flagPair vertexFlags;
5144		for (int i = cumulativeFlags.at("primaryvertexs").size() - 1; i >= 0; i--){
5145		if (cumulativeFlags.at("primaryvertexs").at(i).size()){
5146		vertexFlags = cumulativeFlags.at("primaryvertexs").at(i);
#	Line 4097 \| Line 5148 \| OSUAnalysis::chosenVertex ()
5148		}
5149		}
5150		for (uint vertexIndex = 0; vertexIndex != vertexFlags.size(); vertexIndex++){
5151	<	if(!vertexFlags.at(vertexIndex)) continue;
5151	>	if(!vertexFlags.at(vertexIndex).first) continue;
5152		chosenVertex = & primaryvertexs->at(vertexIndex);
5153		break;
5154		}
#	Line 4113 \| Line 5164 \| OSUAnalysis::chosenMET ()
5164		{
5165		const BNmet *chosenMET = 0;
5166		if(cumulativeFlags.find ("mets") != cumulativeFlags.end ()){
5167	<	vector<bool> metFlags;
5167	>	flagPair metFlags;
5168		for (int i = cumulativeFlags.at("mets").size() - 1; i >= 0; i--){
5169		if (cumulativeFlags.at("mets").at(i).size()){
5170		metFlags = cumulativeFlags.at("mets").at(i);
#	Line 4121 \| Line 5172 \| OSUAnalysis::chosenMET ()
5172		}
5173		}
5174		for (uint metIndex = 0; metIndex != metFlags.size(); metIndex++){
5175	<	if(!metFlags.at(metIndex)) continue;
5175	>	if(!metFlags.at(metIndex).first) continue;
5176		chosenMET = & mets->at(metIndex);
5177		break;
5178		}
#	Line 4137 \| Line 5188 \| OSUAnalysis::chosenElectron ()
5188		{
5189		const BNelectron *chosenElectron = 0;
5190		if(cumulativeFlags.find ("electrons") != cumulativeFlags.end ()){
5191	<	vector<bool> electronFlags;
5191	>	flagPair electronFlags;
5192		for (int i = cumulativeFlags.at("electrons").size() - 1; i >= 0; i--){
5193		if (cumulativeFlags.at("electrons").at(i).size()){
5194		electronFlags = cumulativeFlags.at("electrons").at(i);
#	Line 4145 \| Line 5196 \| OSUAnalysis::chosenElectron ()
5196		}
5197		}
5198		for (uint electronIndex = 0; electronIndex != electronFlags.size(); electronIndex++){
5199	<	if(!electronFlags.at(electronIndex)) continue;
5199	>	if(!electronFlags.at(electronIndex).first) continue;
5200		chosenElectron = & electrons->at(electronIndex);
5201		break;
5202		}
#	Line 4156 \| Line 5207 \| OSUAnalysis::chosenElectron ()
5207		return chosenElectron;
5208		}
5209
5210	+
5211		const BNmuon *
5212		OSUAnalysis::chosenMuon ()
5213		{
5214		const BNmuon *chosenMuon = 0;
5215		if(cumulativeFlags.find ("muons") != cumulativeFlags.end ()){
5216	<	vector<bool> muonFlags;
5216	>	flagPair muonFlags;
5217		for (int i = cumulativeFlags.at("muons").size() - 1; i >= 0; i--){
5218		if (cumulativeFlags.at("muons").at(i).size()){
5219		muonFlags = cumulativeFlags.at("muons").at(i);
#	Line 4169 \| Line 5221 \| OSUAnalysis::chosenMuon ()
5221		}
5222		}
5223		for (uint muonIndex = 0; muonIndex != muonFlags.size(); muonIndex++){
5224	<	if(!muonFlags.at(muonIndex)) continue;
5224	>	if(!muonFlags.at(muonIndex).first) continue;
5225		chosenMuon = & muons->at(muonIndex);
5226		break;
5227		}
#	Line 4180 \| Line 5232 \| OSUAnalysis::chosenMuon ()
5232		return chosenMuon;
5233		}
5234
5235	+	double
5236	+	OSUAnalysis::chosenHT ()
5237	+	{
5238	+	double chosenHT = 0.0;
5239	+	if(cumulativeFlags.find ("jets") != cumulativeFlags.end ()){
5240	+	flagPair jetFlags;
5241	+	for (int i = cumulativeFlags.at("jets").size() - 1; i >= 0; i--){
5242	+	if (cumulativeFlags.at("jets").at(i).size()){
5243	+	jetFlags = cumulativeFlags.at("jets").at(i);
5244	+	break;
5245	+	}
5246	+	}
5247	+	for (uint jetIndex = 0; jetIndex != jetFlags.size(); jetIndex++){
5248	+	if(!jetFlags.at(jetIndex).first) continue;
5249	+	chosenHT += jets->at(jetIndex).pt;
5250	+	}
5251	+	}
5252	+
5253	+	return chosenHT;
5254	+	}
5255	+
5256	+	pair<const BNmuon , const BNmuon >
5257	+	OSUAnalysis::leadMuonPair ()
5258	+	{
5259	+	pair<const BNmuon , const BNmuon > leadMuonPair;
5260	+	leadMuonPair.first = leadMuonPair.second = 0;
5261	+
5262	+	if(cumulativeFlags.find ("muons") != cumulativeFlags.end ()){
5263	+	flagPair muonFlags;
5264	+	for (int i = cumulativeFlags.at("muons").size() - 1; i >= 0; i--){
5265	+	if (cumulativeFlags.at("muons").at(i).size()){
5266	+	muonFlags = cumulativeFlags.at("muons").at(i);
5267	+	break;
5268	+	}
5269	+	}
5270	+	for (uint muonIndex0 = 0; muonIndex0 != muonFlags.size(); muonIndex0++){
5271	+	if(!muonFlags.at(muonIndex0).first) continue;
5272	+	for (uint muonIndex1 = muonIndex0 + 1; muonIndex1 < muonFlags.size(); muonIndex1++){
5273	+	if(!muonFlags.at(muonIndex1).first) continue;
5274	+	const BNmuon *mu0 = & muons->at(muonIndex0);
5275	+	const BNmuon *mu1 = & muons->at(muonIndex1);
5276	+	if(leadMuonPair.first == 0 \|\| leadMuonPair.second == 0){
5277	+	leadMuonPair.first = mu0;
5278	+	leadMuonPair.second = mu1;
5279	+	}
5280	+	else{
5281	+	TVector2 newPt0 (mu0->px, mu0->py),
5282	+	newPt1 (mu1->px, mu1->py),
5283	+	oldPt0 (leadMuonPair.first->px, leadMuonPair.first->py),
5284	+	oldPt1 (leadMuonPair.second->px, leadMuonPair.second->py);
5285	+	if(newPt0.Mod () + newPt1.Mod () > oldPt0.Mod() + oldPt1.Mod ())
5286	+	{
5287	+	leadMuonPair.first = mu0;
5288	+	leadMuonPair.second = mu1;
5289	+	}
5290	+	}
5291	+	}
5292	+	}
5293	+	}
5294	+
5295	+	return leadMuonPair;
5296	+	}
5297	+
5298	+	pair<const BNelectron , const BNelectron >
5299	+	OSUAnalysis::leadElectronPair ()
5300	+	{
5301	+	pair<const BNelectron , const BNelectron > leadElectronPair;
5302	+	leadElectronPair.first = leadElectronPair.second = 0;
5303	+	if(cumulativeFlags.find ("electrons") != cumulativeFlags.end ()){
5304	+	flagPair electronFlags;
5305	+	for (int i = cumulativeFlags.at("electrons").size() - 1; i >= 0; i--){
5306	+	if (cumulativeFlags.at("electrons").at(i).size()){
5307	+	electronFlags = cumulativeFlags.at("electrons").at(i);
5308	+	break;
5309	+	}
5310	+	}
5311	+	for (uint electronIndex0 = 0; electronIndex0 != electronFlags.size(); electronIndex0++){
5312	+	if(!electronFlags.at(electronIndex0).first) continue;
5313	+	for (uint electronIndex1 = electronIndex0 + 1; electronIndex1 < electronFlags.size(); electronIndex1++){
5314	+	if(!electronFlags.at(electronIndex1).first) continue;
5315	+	const BNelectron *el0 = & electrons->at(electronIndex0);
5316	+	const BNelectron *el1 = & electrons->at(electronIndex1);
5317	+	if(leadElectronPair.first == 0 \|\| leadElectronPair.second == 0){
5318	+	leadElectronPair.first = el0;
5319	+	leadElectronPair.second = el1;
5320	+	}
5321	+	else{
5322	+	TVector2 newPt0 (el0->px, el0->py),
5323	+	newPt1 (el1->px, el1->py),
5324	+	oldPt0 (leadElectronPair.first->px, leadElectronPair.first->py),
5325	+	oldPt1 (leadElectronPair.second->px, leadElectronPair.second->py);
5326	+	if(newPt0.Mod () + newPt1.Mod () > oldPt0.Mod() + oldPt1.Mod ())
5327	+	{
5328	+	leadElectronPair.first = el0;
5329	+	leadElectronPair.second = el1;
5330	+	}
5331	+	}
5332	+	}
5333	+	}
5334	+	}
5335	+
5336	+	return leadElectronPair;
5337	+	}
5338	+
5339		DEFINE_FWK_MODULE(OSUAnalysis);

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Comparing UserCode/OSUT3Analysis/AnaTools/plugins/OSUAnalysis.cc (file contents): Revision 1.76 by wulsin, Fri May 31 09:42:10 2013 UTC vs. Revision 1.122 by jbrinson, Fri Aug 9 11:12:33 2013 UTC

Diff Legend

Comparing UserCode/OSUT3Analysis/AnaTools/plugins/OSUAnalysis.cc (file contents):
Revision 1.76 by wulsin, Fri May 31 09:42:10 2013 UTC vs.
Revision 1.122 by jbrinson, Fri Aug 9 11:12:33 2013 UTC