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Comparing UserCode/OSUT3Analysis/AnaTools/plugins/OSUAnalysis.cc (file contents):
Revision 1.102 by wulsin, Mon Jul 22 15:22:57 2013 UTC vs.
Revision 1.123 by wulsin, Mon Aug 12 21:03:10 2013 UTC

# Line 3 | Line 3 | OSUAnalysis::OSUAnalysis (const edm::Par
3    // Retrieve parameters from the configuration file.
4    jets_ (cfg.getParameter<edm::InputTag> ("jets")),
5    muons_ (cfg.getParameter<edm::InputTag> ("muons")),
6 +  secMuons_ (cfg.getParameter<edm::InputTag> ("secMuons")),
7    electrons_ (cfg.getParameter<edm::InputTag> ("electrons")),
8    events_ (cfg.getParameter<edm::InputTag> ("events")),
9    taus_ (cfg.getParameter<edm::InputTag> ("taus")),
# Line 38 | Line 39 | OSUAnalysis::OSUAnalysis (const edm::Par
39    printAllTriggers_    (cfg.getParameter<bool> ("printAllTriggers")),
40    useTrackCaloRhoCorr_ (cfg.getParameter<bool> ("useTrackCaloRhoCorr")),
41    stopCTau_ (cfg.getParameter<vector<double> > ("stopCTau")),
42 <  GetPlotsAfterEachCut_ (cfg.getParameter<bool> ("GetPlotsAfterEachCut"))
42 >  GetPlotsAfterEachCut_ (cfg.getParameter<bool> ("GetPlotsAfterEachCut")),
43 >  verbose_ (cfg.getParameter<int> ("verbose"))
44   {
45  
46 <  TH1::SetDefaultSumw2 ();
46 >  if (verbose_) printEventInfo_ = true;  
47 >  if (verbose_) clog << "Beginning OSUAnalysis::OSUAnalysis constructor." << endl;  
48 >
49 >  TH1::SetDefaultSumw2();
50  
51    //create pile-up reweighting object, if necessary
52    if(datasetType_ != "data") {
# Line 55 | Line 60 | OSUAnalysis::OSUAnalysis (const edm::Par
60      }
61    }
62    if (datasetType_ == "signalMC" && regex_match (dataset_, regex ("stop.*to.*_.*mm.*")))
63 <    stopCTauWeight_ = new StopCTauWeight (stopCTau_.at (0), stopCTau_.at (1), stops_);
63 >    stopCTauWeight_ = new StopCTauWeight (stopCTau_.at(0), stopCTau_.at(1), stops_);
64  
65  
66    // Construct Cutflow Objects. These store the results of cut decisions and
# Line 91 | Line 96 | OSUAnalysis::OSUAnalysis (const edm::Par
96        TString newName = TString(br.inputCollection) + "_" + TString(br.inputVariable);
97        br.name = string(newName.Data());
98        treeBranches_.push_back(br);
99 +      if (verbose_>3) clog << "   Adding branch to BNTree: " << br.name << endl;  
100      }
101  
102    } // end   for (uint iBranchSet = 0; iBranchSet<treeBranchSets_.size(); iBranchSet++)
# Line 121 | Line 127 | OSUAnalysis::OSUAnalysis (const edm::Par
127      if(tempInputCollection == "trigobj-muon pairs")   tempInputCollection = "muon-trigobj pairs";
128      if(tempInputCollection.find("pairs")==string::npos){ //just a single object
129        if(tempInputCollection.find("secondary")!=string::npos){//secondary object
130 <        int spaceIndex = tempInputCollection.find(" ");
131 <        int secondWordLength = tempInputCollection.size() - spaceIndex;
132 <        objectsToGet.push_back(tempInputCollection.substr(spaceIndex+1,secondWordLength));
133 <      }
134 <      else{
130 >        if(tempInputCollection.find("secondary muons")!=string::npos){//treat secondary muons differently; allow for a different input collection
131 >          objectsToGet.push_back("secondary muons");  
132 >        } else {
133 >          int spaceIndex = tempInputCollection.find(" ");
134 >          int secondWordLength = tempInputCollection.size() - spaceIndex;
135 >          objectsToGet.push_back(tempInputCollection.substr(spaceIndex+1,secondWordLength));
136 >        }
137 >      } else{
138          objectsToGet.push_back(tempInputCollection);
139        }
140        objectsToPlot.push_back(tempInputCollection);
# Line 145 | Line 154 | OSUAnalysis::OSUAnalysis (const edm::Par
154        objectsToGet.push_back(obj1);
155        objectsToGet.push_back(obj2ToGet);
156      } // end else
157 <      if (find(objectsToPlot.begin(), objectsToPlot.end(), "events") != objectsToPlot.end())
158 <        objectsToGet.push_back("jets");
159 <
160 <
157 >    if (find(objectsToPlot.begin(), objectsToPlot.end(), "events") != objectsToPlot.end())
158 >      objectsToGet.push_back("jets");
159 >    
160 >    
161      vector<edm::ParameterSet> histogramList_  (histogramSets_.at(currentHistogramSet).getParameter<vector<edm::ParameterSet> >("histograms"));
162  
163      for(uint currentHistogram = 0; currentHistogram != histogramList_.size(); currentHistogram++){
# Line 165 | Line 174 | OSUAnalysis::OSUAnalysis (const edm::Par
174        tempHistogram.variableBinsY = histogramList_.at(currentHistogram).getUntrackedParameter<vector<double> >("variableBinsY", defaultValue);
175        tempHistogram.inputVariables = histogramList_.at(currentHistogram).getParameter<vector<string> >("inputVariables");
176  
177 <      histograms.push_back(tempHistogram);
177 >      bool histExists = false;
178 >      for (uint i=0; i<histograms.size(); i++) {
179 >        if (histograms.at(i).name == tempHistogram.name) { histExists = true; break; }
180 >      }  
181 >      if (histExists) {
182 >        clog << "Warning:  histogram " << tempHistogram.name << " already exists; will not book an additional instance." << endl;  
183 >      } else {
184 >        histograms.push_back(tempHistogram);
185 >      }
186  
187      }
188    } //   for(uint currentHistogramSet = 0; currentHistogramSet != histogramSets_.size(); currentHistogramSet++)
# Line 180 | Line 197 | OSUAnalysis::OSUAnalysis (const edm::Par
197    for(uint currentObjectIndex = 0; currentObjectIndex != objectsToPlot.size(); currentObjectIndex++){
198  
199      string currentObject = objectsToPlot.at(currentObjectIndex);
200 <    if(currentObject != "muons" && currentObject != "secondary muons" && currentObject != "secondary electrons" && currentObject != "electrons" && currentObject != "taus" && currentObject != "tracks" && currentObject != "photons" && currentObject != "secondary photons"&& currentObject != "superclusters") continue;
200 >    if(currentObject != "muons" &&
201 >       currentObject != "secondary muons" &&
202 >       currentObject != "secondary electrons" &&
203 >       currentObject != "electrons" &&
204 >       currentObject != "taus" &&
205 >       currentObject != "tracks" &&
206 >       currentObject != "photons" &&
207 >       currentObject != "secondary photons"&&
208 >       currentObject != "superclusters")
209 >      continue;
210  
211      histogram tempIdHisto;
212      histogram tempMomIdHisto;
# Line 251 | Line 277 | OSUAnalysis::OSUAnalysis (const edm::Par
277      string channelName  (channels_.at(currentChannel).getParameter<string>("name"));
278      tempChannel.name = channelName;
279      TString channelLabel = channelName;
280 +    if (verbose_) clog << "Processing channel:  " << channelName << endl;  
281  
282      //set triggers for this channel
283      vector<string> triggerNames;
# Line 311 | Line 338 | OSUAnalysis::OSUAnalysis (const edm::Par
338        tempCut.inputCollection = tempInputCollection;
339        if(tempInputCollection.find("pairs")==string::npos){ //just a single object
340          if(tempInputCollection.find("secondary")!=string::npos){//secondary object
341 <          int spaceIndex = tempInputCollection.find(" ");
342 <          int secondWordLength = tempInputCollection.size() - spaceIndex;
343 <          objectsToGet.push_back(tempInputCollection.substr(spaceIndex+1,secondWordLength));
341 >          if(tempInputCollection.find("secondary muons")!=string::npos){//treat secondary muons differently; allow for a different input collection
342 >            objectsToGet.push_back("secondary muons");  
343 >          } else {
344 >            int spaceIndex = tempInputCollection.find(" ");
345 >            int secondWordLength = tempInputCollection.size() - spaceIndex;
346 >            objectsToGet.push_back(tempInputCollection.substr(spaceIndex+1,secondWordLength));
347 >          }
348          }
349          else{
350            objectsToGet.push_back(tempInputCollection);
# Line 401 | Line 432 | OSUAnalysis::OSUAnalysis (const edm::Par
432        }
433        subSubDirNames.push_back(subSubDirName);
434        tempCut.name = tempCutName;
435 +      if (verbose_) clog << "Setting up cut, index: " << currentCut << ", input collection: " << tempInputCollection<< ", name: " << tempCut.name << endl;  
436  
437        tempChannel.cuts.push_back(tempCut);
438  
# Line 441 | Line 473 | OSUAnalysis::OSUAnalysis (const edm::Par
473      for(uint currentDir = 0; !useEDMFormat_ && currentDir != treeDirectories.size(); currentDir++){
474        TTree* newTree = treeDirectories.at(currentDir).make<TTree> (TString("BNTree_"+channelLabel), TString("BNTree_"+channelLabel));
475        BNTrees_.push_back(newTree);
476 +      BNTrees_.back()->Branch("event_runInt",  &BNTreeBranchVals_runInt_,  "event_runInt/I");      
477 +      BNTrees_.back()->Branch("event_lumiInt", &BNTreeBranchVals_lumiInt_, "event_lumiInt/I");      
478 +      BNTrees_.back()->Branch("event_evtLong", &BNTreeBranchVals_evtLong_, "event_evtLong/L");      
479        for (uint iBranch = 0; iBranch < treeBranches_.size(); iBranch++){
480          BranchSpecs currentVar = treeBranches_.at(iBranch);
481          vector<float> newVec;
# Line 596 | Line 631 | OSUAnalysis::OSUAnalysis (const edm::Par
631          else if(currentObject == "track-event pairs")         currentObject = "trackEventPairs";
632          else if(currentObject == "electron-track pairs")      currentObject = "electronTrackPairs";
633          else if(currentObject == "muon-track pairs")          currentObject = "muonTrackPairs";
634 +        else if(currentObject == "secondary muon-track pairs") currentObject = "secondaryMuonTrackPairs";
635          else if(currentObject == "muon-tau pairs")            currentObject = "muonTauPairs";
636          else if(currentObject == "tau-tau pairs")             currentObject = "ditauPairs";
637          else if(currentObject == "tau-track pairs")           currentObject = "tauTrackPairs";
# Line 605 | Line 641 | OSUAnalysis::OSUAnalysis (const edm::Par
641          else if(currentObject == "secondary electrons")       currentObject = "secondaryElectrons";
642          else if(currentObject == "electron-trigobj pairs")    currentObject = "electronTrigobjPairs";
643          else if(currentObject == "muon-trigobj pairs")        currentObject = "muonTrigobjPairs";
644 +        else if(currentObject == "electron-mcparticle pairs")   currentObject = "electronMCparticlePairs";
645 +
646  
647          currentObject.at(0) = toupper(currentObject.at(0));
648          string histoName = "num" + currentObject;
# Line 618 | Line 656 | OSUAnalysis::OSUAnalysis (const edm::Par
656          else
657            oneDHists_.at(currentChannel).at(currentDir)[histoName] = directories.at(currentDir).make<TH1D> (TString(histoName),channelLabel+" channel: Number of Selected "+currentObject+"; # "+currentObject, maxNum, 0, maxNum);
658        }
659 +
660 +      if (verbose_) {
661 +        clog << "List of 1D histograms booked for channel " << channelName << " and directory " << currentDir << ":" << endl;
662 +        for(map<string, TH1D*>::iterator
663 +              iter = oneDHists_.at(currentChannel).at(currentDir).begin();
664 +            iter  != oneDHists_.at(currentChannel).at(currentDir).end();
665 +            iter++) {
666 +          clog << " " << iter->first
667 +               << ":  name=" << iter->second->GetName()
668 +               << ", title=" << iter->second->GetTitle()
669 +               << ", bins=(" << iter->second->GetNbinsX()
670 +               << "," << iter->second->GetXaxis()->GetXmin()
671 +               << "," << iter->second->GetXaxis()->GetXmax()
672 +               << ")" << endl;
673 +        }  
674 +        clog << "List of 2D histograms booked for channel " << channelName << " and directory " << currentDir << ":" << endl;
675 +        for(map<string, TH2D*>::iterator
676 +              iter = twoDHists_.at(currentChannel).at(currentDir).begin();
677 +            iter  != twoDHists_.at(currentChannel).at(currentDir).end();
678 +            iter++) {
679 +          clog << " " << iter->first
680 +               << ":  name=" << iter->second->GetName()
681 +               << ", title=" << iter->second->GetTitle()
682 +               << ", binsX=(" << iter->second->GetNbinsX()
683 +               << "," << iter->second->GetXaxis()->GetXmin()
684 +               << "," << iter->second->GetXaxis()->GetXmax()
685 +               << ")"
686 +               << ", binsY=(" << iter->second->GetNbinsY()
687 +               << "," << iter->second->GetYaxis()->GetXmin()
688 +               << "," << iter->second->GetYaxis()->GetXmax()
689 +               << ")"
690 +               << endl;
691 +        }  
692 +      }
693 +
694      }//end of loop over directories
695      channels.push_back(tempChannel);
696      tempChannel.cuts.clear();
697    }//end loop over channels
698  
699  
700 +  // Create the cutflow histogram and fill with 0 weight, in case no events are found in the input file.  
701 +  for(uint currentChannelIndex = 0; currentChannelIndex != channels.size(); currentChannelIndex++){
702 +    channel currentChannel = channels.at(currentChannelIndex);
703 +    if(currentChannel.triggers.size() != 0 || currentChannel.triggersToVeto.size() != 0){  //triggers specified
704 +      cutFlows_.at(currentChannelIndex)->at("trigger") = true;  
705 +    }
706 +    for(uint currentCutIndex = 0; currentCutIndex != currentChannel.cuts.size(); currentCutIndex++){
707 +      cut currentCut = currentChannel.cuts.at(currentCutIndex);
708 +      cutFlows_.at(currentChannelIndex)->at (currentCut.name) = true;
709 +    }
710 +    cutFlows_.at(currentChannelIndex)->fillCutFlow(0);  // fill cutflow with 0 weight, just to create the cutflow histograms  
711 +  }
712 +
713    //make unique vector of objects we need to get from the event
714    sort( objectsToGet.begin(), objectsToGet.end() );
715    objectsToGet.erase( unique( objectsToGet.begin(), objectsToGet.end() ), objectsToGet.end() );
# Line 634 | Line 720 | OSUAnalysis::OSUAnalysis (const edm::Par
720    sort( objectsToFlag.begin(), objectsToFlag.end() );
721    objectsToFlag.erase( unique( objectsToFlag.begin(), objectsToFlag.end() ), objectsToFlag.end() );
722  
723 +  // Move all paired objects to the end of the list, so that the flags for single objects are always set before those of paired objects.  
724 +  for (uint i=0; i<objectsToFlag.size(); i++) {
725 +    if (objectsToFlag.at(i).find("pairs")!=string::npos) { // if it contains "pairs"
726 +      objectsToFlag.push_back(objectsToFlag.at(i));  
727 +      objectsToFlag.erase(objectsToFlag.begin()+i);  
728 +    }
729 +  }
730 +
731 +  if (verbose_) {
732 +    clog << "List of channels:" << endl;
733 +    for (uint i=0; i<channels.size(); i++) {
734 +      clog << " " << channels.at(i).name << endl;
735 +    }
736 +    clog << "List of objects to get:" << endl;
737 +    for (uint i=0; i<objectsToGet.size(); i++) {
738 +      clog << " " << objectsToGet.at(i) << endl;
739 +    }
740 +    clog << "List of objects to plot:" << endl;
741 +    for (uint i=0; i<objectsToPlot.size(); i++) {
742 +      clog << " " << objectsToPlot.at(i) << endl;
743 +    }
744 +    clog << "List of objects to cut:" << endl;
745 +    for (uint i=0; i<objectsToCut.size(); i++) {
746 +      clog << " " << objectsToCut.at(i) << endl;
747 +    }
748 +    clog << "List of objects to flag:" << endl;
749 +    for (uint i=0; i<objectsToFlag.size(); i++) {
750 +      clog << " " << objectsToFlag.at(i) << endl;
751 +    }
752 +  }
753 +
754    produces<map<string, bool> > ("channelDecisions");
755  
756    if (printEventInfo_) {
757      findEventsLog = new ofstream();  
758      findEventsLog->open("findEvents.txt");  
759      clog << "Listing run:lumi:event in file findEvents.txt for events that pass full selection (of any channel)." << endl;  
760 <  }
760 >  } else {
761 >    findEventsLog = 0;
762 >  }  
763 >
764 >  isFirstEvent_ = true;  
765  
766 < } // end constructor OSUAnalysis::OSUAnalysis()
766 >  if (verbose_) clog << "Finished OSUAnalysis::OSUAnalysis constructor." << endl;  
767 >
768 >
769 >  } // end constructor OSUAnalysis::OSUAnalysis()
770  
771  
772   OSUAnalysis::~OSUAnalysis ()
773   {
774  
775 +  if (verbose_) clog << "Beginning OSUAnalysis::OSUAnalysis destructor." << endl;  
776 +
777    // Destroying the CutFlow objects causes the cut flow numbers and time
778    // information to be printed to standard output.
779    for(uint currentChannel = 0; currentChannel != channels_.size(); currentChannel++){
780      delete cutFlows_.at(currentChannel);
781    }
782  
783 <  if (findEventsLog) findEventsLog->close();  
783 >  if (printEventInfo_ && findEventsLog) findEventsLog->close();  
784  
785    clog << "=============================================" << endl;  
786    clog << "Successfully completed OSUAnalysis." << endl;  
787    clog << "=============================================" << endl;  
788  
789 +  if (verbose_) clog << "Finished OSUAnalysis::OSUAnalysis destructor." << endl;  
790 +
791   }
792  
793   void
# Line 667 | Line 795 | OSUAnalysis::produce (edm::Event &event,
795   {
796    // Retrieve necessary collections from the event.
797  
798 <  if (find(objectsToGet.begin(), objectsToGet.end(), "triggers") != objectsToGet.end())
798 >  if (verbose_) clog << "Beginning OSUAnalysis::produce." << endl;  
799 >
800 >  if (find(objectsToGet.begin(), objectsToGet.end(), "triggers") != objectsToGet.end()) {
801      event.getByLabel (triggers_, triggers);
802 +    if (!triggers.product()) clog << "ERROR:  could not get triggers input collection" << endl;  
803 +  }
804  
805 <  if (find(objectsToGet.begin(), objectsToGet.end(), "trigobjs") != objectsToGet.end())
805 >  if (find(objectsToGet.begin(), objectsToGet.end(), "trigobjs") != objectsToGet.end()) {
806      event.getByLabel (trigobjs_, trigobjs);
807 +    if (!trigobjs.product()) clog << "ERROR:  could not get trigobjs input collection" << endl;  
808 +  }
809  
810 <  if (find(objectsToGet.begin(), objectsToGet.end(), "jets") != objectsToGet.end())
810 >  if (find(objectsToGet.begin(), objectsToGet.end(), "jets") != objectsToGet.end()) {
811      event.getByLabel (jets_, jets);
812 +    if (!jets.product()) clog << "ERROR:  could not get jets input collection" << endl;  
813 +  }
814  
815 <  if (find(objectsToGet.begin(), objectsToGet.end(), "muons") != objectsToGet.end())
815 >  if (find(objectsToGet.begin(), objectsToGet.end(), "muons") != objectsToGet.end()) {
816      event.getByLabel (muons_, muons);
817 +    if (!muons.product()) clog << "ERROR:  could not get muons input collection" << endl;  
818 +  }
819  
820 <  if (find(objectsToGet.begin(), objectsToGet.end(), "electrons") != objectsToGet.end())
820 >  if (find(objectsToGet.begin(), objectsToGet.end(), "secondary muons") != objectsToGet.end()) {
821 >    event.getByLabel (secMuons_, secMuons);
822 >    if (!secMuons.product()) clog << "ERROR:  could not get secMuons input collection" << endl;  
823 >  }
824 >
825 >  if (find(objectsToGet.begin(), objectsToGet.end(), "electrons") != objectsToGet.end()) {
826      event.getByLabel (electrons_, electrons);
827 +    if (!electrons.product()) clog << "ERROR:  could not get electrons input collection" << endl;  
828 +  }
829  
830 <  if (find(objectsToGet.begin(), objectsToGet.end(), "events") != objectsToGet.end())
830 >  if (find(objectsToGet.begin(), objectsToGet.end(), "events") != objectsToGet.end()) {
831      event.getByLabel (events_, events);
832 +    if (!events.product()) clog << "ERROR:  could not get events input collection" << endl;  
833 +  }
834  
835 <  if (find(objectsToGet.begin(), objectsToGet.end(), "taus") != objectsToGet.end())
835 >  if (find(objectsToGet.begin(), objectsToGet.end(), "taus") != objectsToGet.end()) {
836      event.getByLabel (taus_, taus);
837 +    if (!taus.product()) clog << "ERROR:  could not get taus input collection" << endl;  
838 +  }
839  
840 <  if (find(objectsToGet.begin(), objectsToGet.end(), "mets") != objectsToGet.end())
840 >  if (find(objectsToGet.begin(), objectsToGet.end(), "mets") != objectsToGet.end()) {
841      event.getByLabel (mets_, mets);
842 +    if (!mets.product()) clog << "ERROR:  could not get mets input collection" << endl;  
843 +  }
844  
845 <  if (find(objectsToGet.begin(), objectsToGet.end(), "tracks") != objectsToGet.end())
845 >  if (find(objectsToGet.begin(), objectsToGet.end(), "tracks") != objectsToGet.end()) {
846      event.getByLabel (tracks_, tracks);
847 +    if (!tracks.product()) clog << "ERROR:  could not get tracks input collection" << endl;  
848 +  }
849  
850 <  if (find(objectsToGet.begin(), objectsToGet.end(), "genjets") != objectsToGet.end())
850 >  if (find(objectsToGet.begin(), objectsToGet.end(), "genjets") != objectsToGet.end()) {
851      event.getByLabel (genjets_, genjets);
852 +    if (!genjets.product()) clog << "ERROR:  could not get genjets input collection" << endl;  
853 +  }
854  
855 <  if (find(objectsToGet.begin(), objectsToGet.end(), "mcparticles") != objectsToGet.end())
855 >  if (find(objectsToGet.begin(), objectsToGet.end(), "mcparticles") != objectsToGet.end()) {
856      event.getByLabel (mcparticles_, mcparticles);
857 +    if (!mcparticles.product()) clog << "ERROR:  could not get mcparticles input collection" << endl;  
858 +  }
859  
860 <  if (find(objectsToGet.begin(), objectsToGet.end(), "primaryvertexs") != objectsToGet.end())
860 >  if (find(objectsToGet.begin(), objectsToGet.end(), "primaryvertexs") != objectsToGet.end()) {
861      event.getByLabel (primaryvertexs_, primaryvertexs);
862 +    if (!primaryvertexs.product()) clog << "ERROR:  could not get primaryvertexs input collection" << endl;  
863 +  }
864  
865 <  if (find(objectsToGet.begin(), objectsToGet.end(), "bxlumis") != objectsToGet.end())
865 >  if (find(objectsToGet.begin(), objectsToGet.end(), "bxlumis") != objectsToGet.end()) {
866      event.getByLabel (bxlumis_, bxlumis);
867 +    if (!bxlumis.product()) clog << "ERROR:  could not get bxlumis input collection" << endl;  
868 +  }
869  
870 <  if (find(objectsToGet.begin(), objectsToGet.end(), "photons") != objectsToGet.end())
870 >  if (find(objectsToGet.begin(), objectsToGet.end(), "photons") != objectsToGet.end()) {
871      event.getByLabel (photons_, photons);
872 +    if (!photons.product()) clog << "ERROR:  could not get photons input collection" << endl;  
873 +  }
874  
875 <  if (find(objectsToGet.begin(), objectsToGet.end(), "superclusters") != objectsToGet.end())
875 >  if (find(objectsToGet.begin(), objectsToGet.end(), "superclusters") != objectsToGet.end()) {
876      event.getByLabel (superclusters_, superclusters);
877 +    if (!superclusters.product()) clog << "ERROR:  could not get superclusters input collection" << endl;  
878 +  }
879  
880    if (datasetType_ == "signalMC"){
881 <    if (find(objectsToGet.begin(), objectsToGet.end(), "stops") != objectsToGet.end())
881 >    if (find(objectsToGet.begin(), objectsToGet.end(), "stops") != objectsToGet.end()) {
882        event.getByLabel (stops_, stops);
883 +      if (!stops.product()) clog << "ERROR:  could not get stops input collection" << endl;  
884 +    }
885    }
886  
887    if (useTrackCaloRhoCorr_) {
# Line 723 | Line 890 | OSUAnalysis::produce (edm::Event &event,
890      // For description of rho values for different jet reconstruction algorithms, see
891      // https://twiki.cern.ch/twiki/bin/view/CMS/JetAlgorithms#Algorithms
892      event.getByLabel ("kt6CaloJets","rho", rhokt6CaloJetsHandle_);
893 +    if (!rhokt6CaloJetsHandle_.product()) clog << "ERROR:  could not get kt6CaloJets input collection" << endl;  
894    }
895  
896    double masterScaleFactor = 1.0;
# Line 730 | Line 898 | OSUAnalysis::produce (edm::Event &event,
898    //get pile-up event weight
899    if (doPileupReweighting_ && datasetType_ != "data") {
900      //for "data" datasets, the numTruePV is always set to -1
901 <    if (events->at(0).numTruePV < 0) clog << "WARNING[OSUAnalysis::analyze]: Event has numTruePV<0.  Turning off pile-up reweighting." << endl;
901 >    if (events->at(0).numTruePV < 0 && isFirstEvent_) clog << "WARNING[OSUAnalysis::analyze]: Event has numTruePV<0.  Turning off pile-up reweighting." << endl;
902      else masterScaleFactor *= puWeight_->at (events->at (0).numTruePV);
903    }
904  
# Line 744 | Line 912 | OSUAnalysis::produce (edm::Event &event,
912    auto_ptr<map<string, bool> > channelDecisions (new map<string, bool>);
913    for(uint currentChannelIndex = 0; currentChannelIndex != channels.size(); currentChannelIndex++){
914      channel currentChannel = channels.at(currentChannelIndex);
915 +    if (verbose_>1) clog << " Processing channel " << currentChannel.name << endl;
916  
917      flagMap individualFlags;
918      counterMap passingCounter;
# Line 763 | Line 932 | OSUAnalysis::produce (edm::Event &event,
932      //loop over all cuts
933      for(uint currentCutIndex = 0; currentCutIndex != currentChannel.cuts.size(); currentCutIndex++){
934        cut currentCut = currentChannel.cuts.at(currentCutIndex);
935 +      if (verbose_>2) clog << "  Processing cut, index: " << currentCutIndex << ", input collection: " << currentCut.inputCollection << ", name: " << currentCut.name << endl;  
936  
937        for(uint currentObjectIndex = 0; currentObjectIndex != objectsToFlag.size(); currentObjectIndex++){
938          string currentObject = objectsToFlag.at(currentObjectIndex);
# Line 774 | Line 944 | OSUAnalysis::produce (edm::Event &event,
944        }
945  
946        //set flags for all relevant objects
947 <      for(uint currentObjectIndex = 0; currentObjectIndex != objectsToFlag.size(); currentObjectIndex++){
948 <        string currentObject = objectsToFlag.at(currentObjectIndex);
949 <
950 <        int flagsForPairCutsIndex = max(int(currentCutIndex-1),0);
951 <
952 <
953 <        if     (currentObject == "jets")            setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,jets.product(),"jets");
954 <        else if(currentObject == "secondary jets")  setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,jets.product(),"secondary jets");
955 <        else if(currentObject == "secondary photons")  setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,photons.product(),"secondary photons");
956 <        else if(currentObject == "muons")           setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,muons.product(),"muons");
957 <        else if(currentObject == "secondary muons") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,muons.product(),"secondary muons");
947 >      for(int currentObjectIndex = -1; currentObjectIndex != int(objectsToFlag.size()); currentObjectIndex++){
948 >        string currentObject;  
949 >        if (currentObjectIndex < 0) currentObject = currentCut.inputCollection;  // In the first loop, set the flags for the collection that the cut is acting on.  That way other paired collections can access the correct flag for the current cut.  
950 >        else currentObject = objectsToFlag.at(currentObjectIndex);
951 >        if (currentObjectIndex >= 0 && currentObject == currentCut.inputCollection) continue;  // Flags have already been set for the inputCollection object, so should not be set again.  
952 >
953 >        // single object collections
954 >        if     (currentObject == "jets")                setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,jets.product(),"jets");
955 >        else if(currentObject == "secondary jets")      setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,jets.product(),"secondary jets");
956 >        else if(currentObject == "secondary photons")   setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,photons.product(),"secondary photons");
957 >        else if(currentObject == "muons")               setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,muons.product(),"muons");
958 >        else if(currentObject == "secondary muons")     setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,secMuons.product(),"secondary muons");
959          else if(currentObject == "secondary electrons") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,electrons.product(),"secondary electrons");
960 <        else if(currentObject == "electrons") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,electrons.product(),"electrons");
961 <        else if(currentObject == "events") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,events.product(),"events");
962 <        else if(currentObject == "taus") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,taus.product(),"taus");
963 <        else if(currentObject == "mets") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,mets.product(),"mets");
964 <        else if(currentObject == "tracks") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,tracks.product(),"tracks");
965 <        else if(currentObject == "genjets") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,genjets.product(),"genjets");
966 <        else if(currentObject == "mcparticles") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,mcparticles.product(),"mcparticles");
967 <        else if(currentObject == "primaryvertexs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,primaryvertexs.product(),"primaryvertexs");
968 <        else if(currentObject == "bxlumis") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,bxlumis.product(),"bxlumis");
969 <        else if(currentObject == "photons") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,photons.product(),"photons");
970 <        else if(currentObject == "superclusters") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,superclusters.product(),"superclusters");
971 <        else if(currentObject == "trigobjs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,trigobjs.product(),"trigobjs");
972 <
973 <
974 <
975 <        else if(currentObject == "muon-muon pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,muons.product(),muons.product(), \
976 <                                                                   cumulativeFlags.at("muons").at(flagsForPairCutsIndex), \
977 <                                                                   cumulativeFlags.at("muons").at(flagsForPairCutsIndex), \
978 <                                                                   "muon-muon pairs");
979 <
980 <        else if(currentObject == "muon-secondary muon pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,muons.product(),muons.product(), \
981 <                                                                             cumulativeFlags.at("muons").at(flagsForPairCutsIndex), \
982 <                                                                             cumulativeFlags.at("secondary muons").at(flagsForPairCutsIndex), \
983 <                                                                             "muon-secondary muon pairs");
984 <
985 <        else if(currentObject == "muon-secondary photon pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,muons.product(),photons.product(), \
986 <                                                                             cumulativeFlags.at("muons").at(flagsForPairCutsIndex), \
987 <                                                                             cumulativeFlags.at("secondary photons").at(flagsForPairCutsIndex), \
988 <                                                                             "muon-secondary photon pairs");
989 <        else if(currentObject == "muon-secondary jet pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,muons.product(),jets.product(), \
990 <                                                                             cumulativeFlags.at("muons").at(flagsForPairCutsIndex), \
991 <                                                                             cumulativeFlags.at("secondary jets").at(flagsForPairCutsIndex), \
992 <                                                                             "muon-secondary jet pairs");
993 <        else if(currentObject == "photon-secondary jet pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,photons.product(),jets.product(), \
994 <                                                                             cumulativeFlags.at("photons").at(flagsForPairCutsIndex), \
995 <                                                                             cumulativeFlags.at("secondary jets").at(flagsForPairCutsIndex), \
996 <                                                                             "photon-secondary jet pairs");
997 <
998 <        else if(currentObject == "electron-secondary jet pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,electrons.product(),jets.product(), \
999 <                                                                             cumulativeFlags.at("electrons").at(flagsForPairCutsIndex), \
1000 <                                                                             cumulativeFlags.at("secondary jets").at(flagsForPairCutsIndex), \
1001 <                                                                             "electron-secondary jet pairs");
1002 <
1003 <        else if(currentObject == "electron-secondary electron pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,electrons.product(),electrons.product(), \
1004 <                                                                                     cumulativeFlags.at("electrons").at(flagsForPairCutsIndex), \
1005 <                                                                                     cumulativeFlags.at("secondary electrons").at(flagsForPairCutsIndex), \
835 <                                                                                     "electron-secondary electron pairs");
836 <
837 <        else if(currentObject == "electron-electron pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,electrons.product(),electrons.product(), \
838 <                                                                           cumulativeFlags.at("electrons").at(flagsForPairCutsIndex), \
839 <                                                                           cumulativeFlags.at("electrons").at(flagsForPairCutsIndex), \
840 <                                                                           "electron-electron pairs");
841 <        else if(currentObject == "electron-muon pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,electrons.product(),muons.product(), \
842 <                                                                       cumulativeFlags.at("electrons").at(flagsForPairCutsIndex), \
843 <                                                                       cumulativeFlags.at("muons").at(flagsForPairCutsIndex), \
844 <                                                                       "electron-muon pairs");
845 <        else if(currentObject == "jet-jet pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,jets.product(),jets.product(), \
846 <                                                                 cumulativeFlags.at("jets").at(flagsForPairCutsIndex), \
847 <                                                                 cumulativeFlags.at("jets").at(flagsForPairCutsIndex), \
848 <                                                                 "jet-jet pairs");
849 <        else if(currentObject == "jet-secondary jet pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,jets.product(),jets.product(), \
850 <                                                                 cumulativeFlags.at("jets").at(flagsForPairCutsIndex), \
851 <                                                                 cumulativeFlags.at("secondary jets").at(flagsForPairCutsIndex),\
852 <                                                                 "jet-secondary jet pairs");
853 <        else if(currentObject == "electron-jet pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,electrons.product(),jets.product(), \
854 <                                                                      cumulativeFlags.at("electrons").at(flagsForPairCutsIndex), \
855 <                                                                      cumulativeFlags.at("jets").at(flagsForPairCutsIndex), \
856 <                                                                      "electron-jet pairs");
857 <        else if(currentObject == "electron-photon pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,electrons.product(),photons.product(), \
858 <                                                                      cumulativeFlags.at("electrons").at(flagsForPairCutsIndex), \
859 <                                                                      cumulativeFlags.at("photons").at(flagsForPairCutsIndex), \
860 <                                                                      "electron-photon pairs");
861 <        else if(currentObject == "photon-jet pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,photons.product(),jets.product(), \
862 <                                                                      cumulativeFlags.at("photons").at(flagsForPairCutsIndex), \
863 <                                                                      cumulativeFlags.at("jets").at(flagsForPairCutsIndex), \
864 <                                                                      "photon-jet pairs");
865 <        else if(currentObject == "muon-jet pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,muons.product(),jets.product(), \
866 <                                                                  cumulativeFlags.at("muons").at(flagsForPairCutsIndex), \
867 <                                                                  cumulativeFlags.at("jets").at(flagsForPairCutsIndex), \
868 <                                                                  "muon-jet pairs");
869 <        else if(currentObject == "muon-event pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,muons.product(),events.product(), \
870 <                                                                  cumulativeFlags.at("muons").at(flagsForPairCutsIndex), \
871 <                                                                  cumulativeFlags.at("events").at(flagsForPairCutsIndex), \
872 <                                                                  "muon-event pairs");
873 <        else if(currentObject == "met-jet pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,mets.product(),jets.product(), \
874 <                                                                  cumulativeFlags.at("mets").at(flagsForPairCutsIndex), \
875 <                                                                  cumulativeFlags.at("jets").at(flagsForPairCutsIndex), \
876 <                                                                  "met-jet pairs");
877 <        else if(currentObject == "track-jet pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,tracks.product(),jets.product(), \
878 <                                                                 cumulativeFlags.at("tracks").at(flagsForPairCutsIndex), \
879 <                                                                 cumulativeFlags.at("jets").at(flagsForPairCutsIndex), \
880 <                                                                 "track-jet pairs");
881 <        else if(currentObject == "muon-photon pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,muons.product(),photons.product(), \
882 <                                                                  cumulativeFlags.at("muons").at(flagsForPairCutsIndex), \
883 <                                                                  cumulativeFlags.at("photons").at(flagsForPairCutsIndex), \
884 <                                                                  "muon-photon pairs");
885 <        else if(currentObject == "track-event pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,tracks.product(),events.product(),
886 <                                                                     cumulativeFlags.at("tracks").at(flagsForPairCutsIndex),
887 <                                                                     cumulativeFlags.at("events").at(flagsForPairCutsIndex),
888 <                                                                     "track-event pairs");
889 <        else if(currentObject == "electron-track pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,electrons.product(),tracks.product(),
890 <                                                                        cumulativeFlags.at("electrons").at(flagsForPairCutsIndex),
891 <                                                                        cumulativeFlags.at("tracks").at(flagsForPairCutsIndex),
892 <                                                                        "electron-track pairs");
893 <        else if(currentObject == "muon-track pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,muons.product(),tracks.product(),
894 <                                                                    cumulativeFlags.at("muons").at(flagsForPairCutsIndex),
895 <                                                                    cumulativeFlags.at("tracks").at(flagsForPairCutsIndex),
896 <                                                                    "muon-track pairs");
897 <        else if(currentObject == "muon-tau pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,muons.product(),taus.product(),
898 <                                                                  cumulativeFlags.at("muons").at(flagsForPairCutsIndex),
899 <                                                                  cumulativeFlags.at("taus").at(flagsForPairCutsIndex),
900 <                                                                  "muon-tau pairs");
901 <        else if(currentObject == "tau-tau pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,taus.product(),taus.product(),
902 <                                                                 cumulativeFlags.at("taus").at(flagsForPairCutsIndex),
903 <                                                                 cumulativeFlags.at("taus").at(flagsForPairCutsIndex),
904 <                                                                 "tau-tau pairs");
905 <        else if(currentObject == "tau-track pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,taus .product(),tracks.product(),
906 <                                                                   cumulativeFlags.at("taus").at(flagsForPairCutsIndex),
907 <                                                                   cumulativeFlags.at("tracks").at(flagsForPairCutsIndex),
908 <                                                                   "tau-track pairs");
909 <        else if(currentObject == "electron-trigobj pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,electrons.product(),trigobjs.product(),
910 <                                                                          cumulativeFlags.at("electrons").at(flagsForPairCutsIndex),
911 <                                                                          cumulativeFlags.at("trigobjs").at(flagsForPairCutsIndex),
912 <                                                                          "electron-trigobj pairs");
913 <        else if(currentObject == "muon-trigobj pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,muons.product(),trigobjs.product(),
914 <                                                                      cumulativeFlags.at("muons").at(flagsForPairCutsIndex),
915 <                                                                      cumulativeFlags.at("trigobjs").at(flagsForPairCutsIndex),
916 <                                                                      "muon-trigobj pairs");
960 >        else if(currentObject == "electrons")           setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,electrons.product(),"electrons");
961 >        else if(currentObject == "events")              setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,events.product(),"events");
962 >        else if(currentObject == "taus")                setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,taus.product(),"taus");
963 >        else if(currentObject == "mets")                setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,mets.product(),"mets");
964 >        else if(currentObject == "tracks")              setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,tracks.product(),"tracks");
965 >        else if(currentObject == "genjets")             setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,genjets.product(),"genjets");
966 >        else if(currentObject == "mcparticles")         setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,mcparticles.product(),"mcparticles");
967 >        else if(currentObject == "primaryvertexs")      setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,primaryvertexs.product(),"primaryvertexs");
968 >        else if(currentObject == "bxlumis")             setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,bxlumis.product(),"bxlumis");
969 >        else if(currentObject == "photons")             setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,photons.product(),"photons");
970 >        else if(currentObject == "superclusters")       setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,superclusters.product(),"superclusters");
971 >        else if(currentObject == "trigobjs")            setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,trigobjs.product(),"trigobjs");
972 >
973 >
974 >        // paired object collections  
975 >        else if(currentObject == "muon-muon pairs")                   setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,muons.product(),muons.product(), "muon-muon pairs");
976 >        else if(currentObject == "muon-secondary muon pairs")         setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,muons.product(),secMuons.product(), "muon-secondary muon pairs");
977 >
978 >        else if(currentObject == "muon-secondary photon pairs")       setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,muons.product(),photons.product(), "muon-secondary photon pairs");
979 >        else if(currentObject == "muon-secondary jet pairs")          setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,muons.product(),jets.product(), "muon-secondary jet pairs");
980 >        else if(currentObject == "photon-secondary jet pairs")        setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,photons.product(),jets.product(), "photon-secondary jet pairs");
981 >        else if(currentObject == "electron-secondary jet pairs")      setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,electrons.product(),jets.product(), "electron-secondary jet pairs");
982 >        else if(currentObject == "electron-secondary electron pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,electrons.product(),electrons.product(), "electron-secondary electron pairs");
983 >
984 >        else if(currentObject == "electron-electron pairs")           setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,electrons.product(),electrons.product(), "electron-electron pairs");
985 >        else if(currentObject == "electron-muon pairs")     setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,electrons.product(),muons.product(), "electron-muon pairs");
986 >        else if(currentObject == "jet-jet pairs")           setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,jets.product(),jets.product(), "jet-jet pairs");
987 >        else if(currentObject == "jet-secondary jet pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,jets.product(),jets.product(), "jet-secondary jet pairs");
988 >        else if(currentObject == "electron-jet pairs")      setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,electrons.product(),jets.product(), "electron-jet pairs");
989 >        else if(currentObject == "electron-photon pairs")   setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,electrons.product(),photons.product(), "electron-photon pairs");
990 >        else if(currentObject == "photon-jet pairs")        setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,photons.product(),jets.product(), "photon-jet pairs");
991 >        else if(currentObject == "muon-jet pairs")          setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,muons.product(),jets.product(), "muon-jet pairs");
992 >        else if(currentObject == "muon-event pairs")        setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,muons.product(),events.product(), "muon-event pairs");
993 >        else if(currentObject == "met-jet pairs")           setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,mets.product(),jets.product(), "met-jet pairs");
994 >        else if(currentObject == "track-jet pairs")         setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,tracks.product(),jets.product(), "track-jet pairs");
995 >        else if(currentObject == "muon-photon pairs")       setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,muons.product(),photons.product(), "muon-photon pairs");
996 >        else if(currentObject == "track-event pairs")       setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,tracks.product(),events.product(), "track-event pairs");
997 >        else if(currentObject == "electron-track pairs")    setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,electrons.product(),tracks.product(),"electron-track pairs");
998 >        else if(currentObject == "muon-track pairs")        setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,muons.product(),tracks.product(),"muon-track pairs");
999 >        else if(currentObject == "secondary muon-track pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,secMuons.product(),tracks.product(),"secondary muon-track pairs");
1000 >        else if(currentObject == "muon-tau pairs")          setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,muons.product(),taus.product(),"muon-tau pairs");
1001 >        else if(currentObject == "tau-tau pairs")           setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,taus.product(),taus.product(),"tau-tau pairs");
1002 >        else if(currentObject == "tau-track pairs")         setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,taus .product(),tracks.product(),"tau-track pairs");
1003 >        else if(currentObject == "electron-trigobj pairs")  setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,electrons.product(),trigobjs.product(),"electron-trigobj pairs");
1004 >        else if(currentObject == "muon-trigobj pairs")      setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,muons.product(),trigobjs.product(),"muon-trigobj pairs");
1005 >        else if(currentObject == "electron-mcparticle pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,electrons.product(),mcparticles.product(),"electron-mcparticle pairs");
1006  
1007          if(currentObject == "stops" && datasetType_ == "signalMC") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,stops.product(),"stops");
1008        }
1009  
1010 +    }//end loop over all cuts
1011  
1012  
923 –    }//end loop over all cuts
924 –    //use cumulative flags to apply cuts at event level
1013  
1014 <    //a vector to store cumulative cut descisions after each cut.
1015 <    vector<bool> eventPassedPreviousCuts;
1014 >    //use cumulative flags to apply cuts at event level
1015 >    vector<bool> eventPassedPreviousCuts;    //a vector to store cumulative cut descisions after each cut.
1016      bool eventPassedAllCuts = true;
1017 <    //apply trigger (true if none were specified)
930 <    eventPassedAllCuts = eventPassedAllCuts && triggerDecision;
1017 >    eventPassedAllCuts = eventPassedAllCuts && triggerDecision;    //apply trigger (true if none were specified)
1018  
1019      for(uint currentCutIndex = 0; currentCutIndex != currentChannel.cuts.size(); currentCutIndex++){
1020  
1021        //loop over all objects and count how many passed the cumulative selection up to this point
1022        cut currentCut = currentChannel.cuts.at(currentCutIndex);
1023        int numberPassing = 0;
1024 +      int numberPassingPrev = 0;  // number of objects that pass cuts up to the previous one
1025  
1026        for (uint object = 0; object != cumulativeFlags.at(currentCut.inputCollection).at(currentCutIndex).size() ; object++){
1027          if(cumulativeFlags.at(currentCut.inputCollection).at(currentCutIndex).at(object).first) numberPassing++;
1028        }
1029 <      bool cutDecision = evaluateComparison(numberPassing,currentCut.eventComparativeOperator,currentCut.numberRequired);
1029 >      bool cutDecision;
1030 >      if (!currentCut.isVeto) {
1031 >        cutDecision = evaluateComparison(numberPassing,currentCut.eventComparativeOperator,currentCut.numberRequired);
1032 >      } else {
1033 >        int prevCutIndex = currentCutIndex - 1;
1034 >        if (prevCutIndex<0) {
1035 >          numberPassingPrev = cumulativeFlags.at(currentCut.inputCollection).at(currentCutIndex).size();  // count all objects in collection if cut is the first
1036 >        } else {
1037 >          for (uint object = 0; object != cumulativeFlags.at(currentCut.inputCollection).at(prevCutIndex).size() ; object++){
1038 >            if (cumulativeFlags.at(currentCut.inputCollection).at(prevCutIndex).at(object).first) {
1039 >              numberPassingPrev++;
1040 >              if (verbose_>1) clog << " object passed previous cut" << endl;  
1041 >            }
1042 >          }  
1043 >        }  
1044 >        int numberFailCut = numberPassingPrev - numberPassing;
1045 >        cutDecision = evaluateComparison(numberFailCut,currentCut.eventComparativeOperator,currentCut.numberRequired);  
1046 >      }
1047 >
1048        cutFlows_.at(currentChannelIndex)->at (currentCut.name) = cutDecision;
1049        eventPassedAllCuts = eventPassedAllCuts && cutDecision;
1050        eventPassedPreviousCuts.push_back(eventPassedAllCuts);
1051 +      if (verbose_>1) clog << " Event passed cuts up to cut index " << currentCutIndex << endl;  
1052 +
1053      }
1054      //applying all appropriate scale factors
1055      double scaleFactor = masterScaleFactor;
# Line 1006 | Line 1114 | OSUAnalysis::produce (edm::Event &event,
1114      scaleFactor *= electronScaleFactor_;
1115      scaleFactor *= bTagScaleFactor_;
1116      cutFlows_.at(currentChannelIndex)->fillCutFlow(scaleFactor);
1117 +    if (verbose_>1) clog << " Scale factors applied:  "
1118 +                         << " muonScaleFactor_ = " << muonScaleFactor_
1119 +                         << ", electronScaleFactor_ = " << electronScaleFactor_
1120 +                         << ", bTagScaleFactor_ = " << bTagScaleFactor_
1121 +                         << ", total scale factor = " << scaleFactor
1122 +                         << endl;  
1123 +
1124  
1125      if (printEventInfo_ && eventPassedAllCuts) {
1126        // Write information about event to screen, for testing purposes.
# Line 1024 | Line 1139 | OSUAnalysis::produce (edm::Event &event,
1139  
1140  
1141      //filling histograms
1142 <    for(uint currentCut = 0; currentCut != oneDHists_.at(currentChannelIndex).size(); currentCut++){//loop over all the directories in each channel.
1142 >    for(uint currentCut = 0; currentCut != oneDHists_.at(currentChannelIndex).size(); currentCut++){//loop over all the cuts in each channel; if GetPlotsAfterEachCut_ is false, only the last cut will be used.
1143 >
1144 >      if (verbose_>2) clog << "  Filling histograms for currentcut = " << currentCut << endl;  
1145 >
1146        uint currentDir;
1147        if (!GetPlotsAfterEachCut_) { currentDir =  currentChannel.cuts.size() - oneDHists_.at(currentChannelIndex).size(); } //if GetPlotsAfterEachCut_ is false, set currentDir point to the last cut.
1148        else{
# Line 1039 | Line 1157 | OSUAnalysis::produce (edm::Event &event,
1157  
1158            if (cumulativeFlags.count(currentHistogram.inputCollection) == 0) clog << "Error: no flags found for collection:  " << currentHistogram.inputCollection << ", will cause a seg fault" << endl;
1159  
1160 +          if (verbose_>1) clog << " Filling histogram " << currentHistogram.name << " for collection " << currentHistogram.inputCollection << endl;  
1161 +
1162            if(currentHistogram.inputVariables.size() == 1){
1163              TH1D* histo;
1164              histo = oneDHists_.at(currentChannelIndex).at(currentCut).at(currentHistogram.name);
1165 <            if     (currentHistogram.inputCollection == "jets")            fill1DHistogram(histo,currentHistogram,jets.product(),cumulativeFlags.at("jets").at(currentDir),scaleFactor);
1165 >            if     (currentHistogram.inputCollection == "jets")            fill1DHistogram(histo,currentHistogram,jets.product(),cumulativeFlags.at("jets").at(currentDir),scaleFactor);
1166              else if(currentHistogram.inputCollection == "secondary jets")  fill1DHistogram(histo,currentHistogram,jets.product(),cumulativeFlags.at("secondary jets").at(currentDir),scaleFactor);
1167              else if(currentHistogram.inputCollection == "secondary photons")  fill1DHistogram(histo,currentHistogram,photons.product(),cumulativeFlags.at("secondary photons").at(currentDir),scaleFactor);
1168              else if(currentHistogram.inputCollection == "muons")           fill1DHistogram(histo,currentHistogram,muons.product(),cumulativeFlags.at("muons").at(currentDir),scaleFactor);
1169 <            else if(currentHistogram.inputCollection == "secondary muons") fill1DHistogram(histo,currentHistogram,muons.product(),cumulativeFlags.at("secondary muons").at(currentDir),scaleFactor);
1169 >            else if(currentHistogram.inputCollection == "secondary muons") fill1DHistogram(histo,currentHistogram,secMuons.product(),cumulativeFlags.at("secondary muons").at(currentDir),scaleFactor);
1170              else if(currentHistogram.inputCollection == "secondary electrons") fill1DHistogram(histo,currentHistogram,electrons.product(),cumulativeFlags.at("secondary electrons").at(currentDir),scaleFactor);
1171 <            else if(currentHistogram.inputCollection == "muon-muon pairs") fill1DHistogram(histo,currentHistogram,muons.product(),muons.product(), \
1052 <                                                                                           cumulativeFlags.at("muons").at(currentDir),cumulativeFlags.at("muons").at(currentDir), \
1171 >            else if(currentHistogram.inputCollection == "muon-muon pairs") fill1DHistogram(histo,currentHistogram,muons.product(),muons.product(),
1172                                                                                             cumulativeFlags.at("muon-muon pairs").at(currentDir),scaleFactor);
1173 <            else if(currentHistogram.inputCollection == "muon-secondary muon pairs") fill1DHistogram(histo,currentHistogram,muons.product(),muons.product(), \
1055 <                                                                                                     cumulativeFlags.at("muons").at(currentDir),cumulativeFlags.at("secondary muons").at(currentDir), \
1173 >            else if(currentHistogram.inputCollection == "muon-secondary muon pairs") fill1DHistogram(histo,currentHistogram,muons.product(),secMuons.product(),
1174                                                                                                       cumulativeFlags.at("muon-secondary muon pairs").at(currentDir),scaleFactor);
1175 <             else if(currentHistogram.inputCollection == "muon-secondary photon pairs") fill1DHistogram(histo,currentHistogram,muons.product(),photons.product(), \
1058 <                                                                                                     cumulativeFlags.at("muons").at(currentDir),cumulativeFlags.at("secondary photons").at(currentDir), \
1175 >             else if(currentHistogram.inputCollection == "muon-secondary photon pairs") fill1DHistogram(histo,currentHistogram,muons.product(),photons.product(),
1176                                                                                                       cumulativeFlags.at("muon-secondary photon pairs").at(currentDir),scaleFactor);
1177 <             else if(currentHistogram.inputCollection == "muon-secondary jet pairs") fill1DHistogram(histo,currentHistogram,muons.product(),jets.product(), \
1061 <                                                                                                     cumulativeFlags.at("muons").at(currentDir),cumulativeFlags.at("secondary jets").at(currentDir), \
1177 >             else if(currentHistogram.inputCollection == "muon-secondary jet pairs") fill1DHistogram(histo,currentHistogram,muons.product(),jets.product(),
1178                                                                                                       cumulativeFlags.at("muon-secondary jet pairs").at(currentDir),scaleFactor);
1179 <             else if(currentHistogram.inputCollection == "photon-secondary jet pairs") fill1DHistogram(histo,currentHistogram,photons.product(),jets.product(), \
1064 <                                                                                                     cumulativeFlags.at("photons").at(currentDir),cumulativeFlags.at("secondary jets").at(currentDir), \
1179 >             else if(currentHistogram.inputCollection == "photon-secondary jet pairs") fill1DHistogram(histo,currentHistogram,photons.product(),jets.product(),
1180                                                                                                       cumulativeFlags.at("photon-secondary jet pairs").at(currentDir),scaleFactor);
1181 <             else if(currentHistogram.inputCollection == "electron-secondary jet pairs") fill1DHistogram(histo,currentHistogram,electrons.product(),jets.product(), \
1067 <                                                                                                     cumulativeFlags.at("electrons").at(currentDir),cumulativeFlags.at("secondary jets").at(currentDir), \
1181 >             else if(currentHistogram.inputCollection == "electron-secondary jet pairs") fill1DHistogram(histo,currentHistogram,electrons.product(),jets.product(),
1182                                                                                                       cumulativeFlags.at("electron-secondary jet pairs").at(currentDir),scaleFactor);
1183  
1184              else if(currentHistogram.inputCollection == "electrons") fill1DHistogram(histo,currentHistogram,electrons.product(),cumulativeFlags.at("electrons").at(currentDir),scaleFactor);
1185 <            else if(currentHistogram.inputCollection == "electron-electron pairs") fill1DHistogram(histo,currentHistogram,electrons.product(),electrons.product(),\
1072 <                                                                                                   cumulativeFlags.at("electrons").at(currentDir),cumulativeFlags.at("electrons").at(currentDir),\
1185 >            else if(currentHistogram.inputCollection == "electron-electron pairs") fill1DHistogram(histo,currentHistogram,electrons.product(),electrons.product(),
1186                                                                                                     cumulativeFlags.at("electron-electron pairs").at(currentDir),scaleFactor);
1187 <            else if(currentHistogram.inputCollection == "jet-jet pairs") fill1DHistogram(histo,currentHistogram,jets.product(),jets.product(),\
1075 <                                                                                         cumulativeFlags.at("jets").at(currentDir),cumulativeFlags.at("jets").at(currentDir),\
1187 >            else if(currentHistogram.inputCollection == "jet-jet pairs") fill1DHistogram(histo,currentHistogram,jets.product(),jets.product(),
1188                                                                                           cumulativeFlags.at("jet-jet pairs").at(currentDir),scaleFactor);
1189 <             else if(currentHistogram.inputCollection == "jet-secondary jet pairs") fill1DHistogram(histo,currentHistogram,jets.product(),jets.product(), \
1078 <                                                                                                     cumulativeFlags.at("jets").at(currentDir),cumulativeFlags.at("secondary jets").at(currentDir), \
1189 >             else if(currentHistogram.inputCollection == "jet-secondary jet pairs") fill1DHistogram(histo,currentHistogram,jets.product(),jets.product(),
1190                                                                                                       cumulativeFlags.at("jet-secondary jet pairs").at(currentDir),scaleFactor);
1191  
1192 <            else if(currentHistogram.inputCollection == "electron-secondary electron pairs") fill1DHistogram(histo,currentHistogram,electrons.product(),electrons.product(), \
1082 <                                                                                                             cumulativeFlags.at("electrons").at(currentDir),cumulativeFlags.at("secondary electrons").at(currentDir), \
1192 >            else if(currentHistogram.inputCollection == "electron-secondary electron pairs") fill1DHistogram(histo,currentHistogram,electrons.product(),electrons.product(),
1193                                                                                                               cumulativeFlags.at("electron-secondary electron pairs").at(currentDir),scaleFactor);
1194 <            else if(currentHistogram.inputCollection == "electron-muon pairs") fill1DHistogram(histo,currentHistogram, electrons.product(),muons.product(), \
1085 <                                                                                               cumulativeFlags.at("electrons").at(currentDir),cumulativeFlags.at("muons").at(currentDir),
1194 >            else if(currentHistogram.inputCollection == "electron-muon pairs") fill1DHistogram(histo,currentHistogram, electrons.product(),muons.product(),
1195                                                                                                 cumulativeFlags.at("electron-muon pairs").at(currentDir),scaleFactor);
1196 <            else if(currentHistogram.inputCollection == "electron-jet pairs") fill1DHistogram(histo,currentHistogram, electrons.product(),jets.product(), \
1088 <                                                                                              cumulativeFlags.at("electrons").at(currentDir),cumulativeFlags.at("jets").at(currentDir),
1196 >            else if(currentHistogram.inputCollection == "electron-jet pairs") fill1DHistogram(histo,currentHistogram, electrons.product(),jets.product(),
1197                                                                                                cumulativeFlags.at("electron-jet pairs").at(currentDir),scaleFactor);
1198 <            else if(currentHistogram.inputCollection == "photon-jet pairs") fill1DHistogram(histo,currentHistogram, photons.product(),jets.product(), \
1091 <                                                                                              cumulativeFlags.at("photons").at(currentDir),cumulativeFlags.at("jets").at(currentDir),
1198 >            else if(currentHistogram.inputCollection == "photon-jet pairs") fill1DHistogram(histo,currentHistogram, photons.product(),jets.product(),
1199                                                                                                cumulativeFlags.at("photon-jet pairs").at(currentDir),scaleFactor);
1200 <            else if(currentHistogram.inputCollection == "muon-jet pairs") fill1DHistogram(histo,currentHistogram, muons.product(),jets.product(), \
1094 <                                                                                          cumulativeFlags.at("muons").at(currentDir),cumulativeFlags.at("jets").at(currentDir),
1200 >            else if(currentHistogram.inputCollection == "muon-jet pairs") fill1DHistogram(histo,currentHistogram, muons.product(),jets.product(),
1201                                                                                            cumulativeFlags.at("muon-jet pairs").at(currentDir),scaleFactor);
1202 <            else if(currentHistogram.inputCollection == "muon-event pairs") fill1DHistogram(histo,currentHistogram, muons.product(),events.product(), \
1097 <                                                                                          cumulativeFlags.at("muons").at(currentDir),cumulativeFlags.at("events").at(currentDir),
1202 >            else if(currentHistogram.inputCollection == "muon-event pairs") fill1DHistogram(histo,currentHistogram, muons.product(),events.product(),
1203                                                                                            cumulativeFlags.at("muon-event pairs").at(currentDir),scaleFactor);
1204 <            else if(currentHistogram.inputCollection == "met-jet pairs")  fill1DHistogram(histo,currentHistogram, mets.product(),jets.product(), \
1100 <                                                                                          cumulativeFlags.at("mets").at(currentDir),cumulativeFlags.at("jets").at(currentDir),
1204 >            else if(currentHistogram.inputCollection == "met-jet pairs")  fill1DHistogram(histo,currentHistogram, mets.product(),jets.product(),
1205                                                                                            cumulativeFlags.at("met-jet pairs").at(currentDir),scaleFactor);
1206 <            else if(currentHistogram.inputCollection == "track-jet pairs")  fill1DHistogram(histo,currentHistogram,tracks.product(),jets.product(), \
1103 <                                                                                          cumulativeFlags.at("tracks").at(currentDir),cumulativeFlags.at("jets").at(currentDir),
1206 >            else if(currentHistogram.inputCollection == "track-jet pairs")  fill1DHistogram(histo,currentHistogram,tracks.product(),jets.product(),
1207                                                                                            cumulativeFlags.at("track-jet pairs").at(currentDir),scaleFactor);
1208 <            else if(currentHistogram.inputCollection == "muon-photon pairs") fill1DHistogram(histo,currentHistogram, muons.product(),photons.product(), \
1106 <                                                                                          cumulativeFlags.at("muons").at(currentDir),cumulativeFlags.at("photons").at(currentDir),
1208 >            else if(currentHistogram.inputCollection == "muon-photon pairs") fill1DHistogram(histo,currentHistogram, muons.product(),photons.product(),
1209                                                                                            cumulativeFlags.at("muon-photon pairs").at(currentDir),scaleFactor);
1210 <            else if(currentHistogram.inputCollection == "electron-photon pairs") fill1DHistogram(histo,currentHistogram, electrons.product(),photons.product(), \
1109 <                                                                                          cumulativeFlags.at("electrons").at(currentDir),cumulativeFlags.at("photons").at(currentDir),
1210 >            else if(currentHistogram.inputCollection == "electron-photon pairs") fill1DHistogram(histo,currentHistogram, electrons.product(),photons.product(),
1211                                                                                            cumulativeFlags.at("electron-photon pairs").at(currentDir),scaleFactor);
1212              else if(currentHistogram.inputCollection == "electron-track pairs") fill1DHistogram(histo,currentHistogram, electrons.product(),tracks.product(),
1112 –                                                                                                cumulativeFlags.at("electrons").at(currentDir),cumulativeFlags.at("tracks").at(currentDir),
1213                                                                                                  cumulativeFlags.at("electron-track pairs").at(currentDir),scaleFactor);
1214              else if(currentHistogram.inputCollection == "muon-track pairs") fill1DHistogram(histo,currentHistogram, muons.product(),tracks.product(),
1115 –                                                                                            cumulativeFlags.at("muons").at(currentDir),cumulativeFlags.at("tracks").at(currentDir),
1215                                                                                              cumulativeFlags.at("muon-track pairs").at(currentDir),scaleFactor);
1216 +            else if(currentHistogram.inputCollection == "secondary muon-track pairs") fill1DHistogram(histo,currentHistogram, secMuons.product(),tracks.product(),
1217 +                                                                                            cumulativeFlags.at("secondary muon-track pairs").at(currentDir),scaleFactor);
1218              else if(currentHistogram.inputCollection == "muon-tau pairs") fill1DHistogram(histo,currentHistogram, muons.product(),taus.product(),
1118 –                                                                                          cumulativeFlags.at("muons").at(currentDir),cumulativeFlags.at("taus").at(currentDir),
1219                                                                                            cumulativeFlags.at("muon-tau pairs").at(currentDir),scaleFactor);
1220              else if(currentHistogram.inputCollection == "tau-tau pairs") fill1DHistogram(histo,currentHistogram, taus.product(),taus.product(),
1121 –                                                                                         cumulativeFlags.at("taus").at(currentDir),cumulativeFlags.at("taus").at(currentDir),
1221                                                                                           cumulativeFlags.at("tau-tau pairs").at(currentDir),scaleFactor);
1222              else if(currentHistogram.inputCollection == "tau-track pairs") fill1DHistogram(histo,currentHistogram, taus.product(),tracks.product(),
1124 –                                                                                           cumulativeFlags.at("taus").at(currentDir),cumulativeFlags.at("tracks").at(currentDir),
1223                                                                                             cumulativeFlags.at("tau-track pairs").at(currentDir),scaleFactor);
1224              else if(currentHistogram.inputCollection == "electron-trigobj pairs") fill1DHistogram(histo,currentHistogram, electrons.product(),trigobjs.product(),
1127 –                                                                                                  cumulativeFlags.at("electrons").at(currentDir),cumulativeFlags.at("trigobjs").at(currentDir),
1225                                                                                                    cumulativeFlags.at("electron-trigobj pairs").at(currentDir),scaleFactor);
1226              else if(currentHistogram.inputCollection == "muon-trigobj pairs") fill1DHistogram(histo,currentHistogram, muons.product(),trigobjs.product(),
1130 –                                                                                              cumulativeFlags.at("muons").at(currentDir),cumulativeFlags.at("trigobjs").at(currentDir),
1227                                                                                                cumulativeFlags.at("muon-trigobj pairs").at(currentDir),scaleFactor);
1228  
1229              else if(currentHistogram.inputCollection == "events") fill1DHistogram(histo,currentHistogram,events.product(),cumulativeFlags.at("events").at(currentDir),scaleFactor);
# Line 1150 | Line 1246 | OSUAnalysis::produce (edm::Event &event,
1246              else if(currentHistogram.inputCollection == "secondary jets")  fill2DHistogram(histo,currentHistogram,jets.product(),cumulativeFlags.at("secondary jets").at(currentDir),scaleFactor);
1247              else if(currentHistogram.inputCollection == "secondary photons")  fill2DHistogram(histo,currentHistogram,photons.product(),cumulativeFlags.at("secondary photons").at(currentDir),scaleFactor);
1248              else if(currentHistogram.inputCollection == "muons")           fill2DHistogram(histo,currentHistogram,muons.product(),cumulativeFlags.at("muons").at(currentDir),scaleFactor);
1249 <            else if(currentHistogram.inputCollection == "secondary muons") fill2DHistogram(histo,currentHistogram,muons.product(),cumulativeFlags.at("secondary muons").at(currentDir),scaleFactor);
1250 <            else if(currentHistogram.inputCollection == "muon-muon pairs") fill2DHistogram(histo,currentHistogram,muons.product(),muons.product(), \
1155 <                                                                                           cumulativeFlags.at("muons").at(currentDir),cumulativeFlags.at("muons").at(currentDir), \
1249 >            else if(currentHistogram.inputCollection == "secondary muons") fill2DHistogram(histo,currentHistogram,secMuons.product(),cumulativeFlags.at("secondary muons").at(currentDir),scaleFactor);
1250 >            else if(currentHistogram.inputCollection == "muon-muon pairs") fill2DHistogram(histo,currentHistogram,muons.product(),muons.product(),
1251                                                                                             cumulativeFlags.at("muon-muon pairs").at(currentDir),scaleFactor);
1252 <            else if(currentHistogram.inputCollection == "muon-secondary muon pairs") fill2DHistogram(histo,currentHistogram,muons.product(),muons.product(), \
1158 <                                                                                                     cumulativeFlags.at("muons").at(currentDir),cumulativeFlags.at("secondary muons").at(currentDir), \
1252 >            else if(currentHistogram.inputCollection == "muon-secondary muon pairs") fill2DHistogram(histo,currentHistogram,muons.product(),secMuons.product(),
1253                                                                                                       cumulativeFlags.at("muon-secondary muon pairs").at(currentDir),scaleFactor);
1254 <            else if(currentHistogram.inputCollection == "muon-secondary photon pairs") fill2DHistogram(histo,currentHistogram,muons.product(),photons.product(), \
1161 <                                                                                                     cumulativeFlags.at("muons").at(currentDir),cumulativeFlags.at("secondary photons").at(currentDir), \
1254 >            else if(currentHistogram.inputCollection == "muon-secondary photon pairs") fill2DHistogram(histo,currentHistogram,muons.product(),photons.product(),
1255                                                                                                       cumulativeFlags.at("muon-secondary photon pairs").at(currentDir),scaleFactor);
1256 <            else if(currentHistogram.inputCollection == "muon-secondary jet pairs") fill2DHistogram(histo,currentHistogram,muons.product(),jets.product(), \
1164 <                                                                                                     cumulativeFlags.at("muons").at(currentDir),cumulativeFlags.at("secondary jets").at(currentDir), \
1256 >            else if(currentHistogram.inputCollection == "muon-secondary jet pairs") fill2DHistogram(histo,currentHistogram,muons.product(),jets.product(),
1257                                                                                                       cumulativeFlags.at("muon-secondary jet pairs").at(currentDir),scaleFactor);
1258 <            else if(currentHistogram.inputCollection == "electron-secondary jet pairs") fill2DHistogram(histo,currentHistogram,electrons.product(),jets.product(), \
1167 <                                                                                                     cumulativeFlags.at("electrons").at(currentDir),cumulativeFlags.at("secondary jets").at(currentDir), \
1258 >            else if(currentHistogram.inputCollection == "electron-secondary jet pairs") fill2DHistogram(histo,currentHistogram,electrons.product(),jets.product(),
1259                                                                                                       cumulativeFlags.at("electron-secondary jet pairs").at(currentDir),scaleFactor);
1260 <            else if(currentHistogram.inputCollection == "photon-secondary jet pairs") fill2DHistogram(histo,currentHistogram,photons.product(),jets.product(), \
1170 <                                                                                                     cumulativeFlags.at("photons").at(currentDir),cumulativeFlags.at("secondary jets").at(currentDir), \
1260 >            else if(currentHistogram.inputCollection == "photon-secondary jet pairs") fill2DHistogram(histo,currentHistogram,photons.product(),jets.product(),
1261                                                                                                       cumulativeFlags.at("photon-secondary jet pairs").at(currentDir),scaleFactor);
1262              else if(currentHistogram.inputCollection == "electrons") fill2DHistogram(histo,currentHistogram,electrons.product(),cumulativeFlags.at("electrons").at(currentDir),scaleFactor);
1263              else if(currentHistogram.inputCollection == "secondary electrons") fill2DHistogram(histo,currentHistogram,electrons.product(),cumulativeFlags.at("secondary electrons").at(currentDir),scaleFactor);
1264 <            else if(currentHistogram.inputCollection == "electron-electron pairs") fill2DHistogram(histo,currentHistogram,electrons.product(),electrons.product(), \
1175 <                                                                                                   cumulativeFlags.at("electrons").at(currentDir),cumulativeFlags.at("electrons").at(currentDir), \
1264 >            else if(currentHistogram.inputCollection == "electron-electron pairs") fill2DHistogram(histo,currentHistogram,electrons.product(),electrons.product(),
1265                                                                                                     cumulativeFlags.at("electron-electron pairs").at(currentDir),scaleFactor);
1266 <            else if(currentHistogram.inputCollection == "jet-jet pairs") fill2DHistogram(histo,currentHistogram,jets.product(),jets.product(), \
1178 <                                                                                         cumulativeFlags.at("jets").at(currentDir),cumulativeFlags.at("jets").at(currentDir), \
1266 >            else if(currentHistogram.inputCollection == "jet-jet pairs") fill2DHistogram(histo,currentHistogram,jets.product(),jets.product(),
1267                                                                                           cumulativeFlags.at("jet-jet pairs").at(currentDir),scaleFactor);
1268 <            else if(currentHistogram.inputCollection == "electron-secondary electron pairs") fill2DHistogram(histo,currentHistogram,electrons.product(),electrons.product(), \
1181 <                                                                                                             cumulativeFlags.at("electrons").at(currentDir),cumulativeFlags.at("secondary electrons").at(currentDir), \
1268 >            else if(currentHistogram.inputCollection == "electron-secondary electron pairs") fill2DHistogram(histo,currentHistogram,electrons.product(),electrons.product(),
1269                                                                                                               cumulativeFlags.at("electron-secondary electron pairs").at(currentDir),scaleFactor);
1270 <            else if(currentHistogram.inputCollection == "electron-muon pairs") fill2DHistogram(histo,currentHistogram,electrons.product(),muons.product(), \
1184 <                                                                                               cumulativeFlags.at("electrons").at(currentDir),cumulativeFlags.at("muons").at(currentDir), \
1270 >            else if(currentHistogram.inputCollection == "electron-muon pairs") fill2DHistogram(histo,currentHistogram,electrons.product(),muons.product(),
1271                                                                                                 cumulativeFlags.at("electron-muon pairs").at(currentDir),scaleFactor);
1272 <            else if(currentHistogram.inputCollection == "electron-jet pairs") fill2DHistogram(histo,currentHistogram,electrons.product(),jets.product(), \
1187 <                                                                                              cumulativeFlags.at("electrons").at(currentDir),cumulativeFlags.at("jets").at(currentDir), \
1272 >            else if(currentHistogram.inputCollection == "electron-jet pairs") fill2DHistogram(histo,currentHistogram,electrons.product(),jets.product(),
1273                                                                                                cumulativeFlags.at("electron-jet pairs").at(currentDir),scaleFactor);
1274 <            else if(currentHistogram.inputCollection == "electron-photon pairs") fill2DHistogram(histo,currentHistogram,electrons.product(),photons.product(), \
1190 <                                                                                              cumulativeFlags.at("electrons").at(currentDir),cumulativeFlags.at("photons").at(currentDir), \
1274 >            else if(currentHistogram.inputCollection == "electron-photon pairs") fill2DHistogram(histo,currentHistogram,electrons.product(),photons.product(),
1275                                                                                                cumulativeFlags.at("electron-photon pairs").at(currentDir),scaleFactor);
1276 <            else if(currentHistogram.inputCollection == "muon-jet pairs") fill2DHistogram(histo,currentHistogram,muons.product(),jets.product(), \
1193 <                                                                                          cumulativeFlags.at("muons").at(currentDir),cumulativeFlags.at("jets").at(currentDir), \
1276 >            else if(currentHistogram.inputCollection == "muon-jet pairs") fill2DHistogram(histo,currentHistogram,muons.product(),jets.product(),
1277                                                                                            cumulativeFlags.at("muon-jet pairs").at(currentDir),scaleFactor);
1278 <            else if(currentHistogram.inputCollection == "muon-event pairs") fill2DHistogram(histo,currentHistogram,muons.product(),events.product(), \
1196 <                                                                                          cumulativeFlags.at("muons").at(currentDir),cumulativeFlags.at("events").at(currentDir), \
1278 >            else if(currentHistogram.inputCollection == "muon-event pairs") fill2DHistogram(histo,currentHistogram,muons.product(),events.product(),
1279                                                                                            cumulativeFlags.at("muon-event pairs").at(currentDir),scaleFactor);
1280 <            else if(currentHistogram.inputCollection == "met-jet pairs") fill2DHistogram(histo,currentHistogram,mets.product(),jets.product(), \
1199 <                                                                                         cumulativeFlags.at("mets").at(currentDir),cumulativeFlags.at("jets").at(currentDir), \
1280 >            else if(currentHistogram.inputCollection == "met-jet pairs") fill2DHistogram(histo,currentHistogram,mets.product(),jets.product(),
1281                                                                                           cumulativeFlags.at("met-jet pairs").at(currentDir),scaleFactor);
1282              else if(currentHistogram.inputCollection == "track-jet pairs") fill2DHistogram(histo,currentHistogram,tracks.product(),jets.product(),
1202 –                                                                                         cumulativeFlags.at("tracks").at(currentDir),cumulativeFlags.at("jets").at(currentDir), \
1283                                                                                           cumulativeFlags.at("track-jet pairs").at(currentDir),scaleFactor);
1284 <            else if(currentHistogram.inputCollection == "photon-jet pairs") fill2DHistogram(histo,currentHistogram,photons.product(),jets.product(), \
1205 <                                                                                          cumulativeFlags.at("photons").at(currentDir),cumulativeFlags.at("jets").at(currentDir), \
1284 >            else if(currentHistogram.inputCollection == "photon-jet pairs") fill2DHistogram(histo,currentHistogram,photons.product(),jets.product(),
1285                                                                                            cumulativeFlags.at("photon-jet pairs").at(currentDir),scaleFactor);
1286 <            else if(currentHistogram.inputCollection == "muon-photon pairs") fill2DHistogram(histo,currentHistogram,muons.product(),photons.product(), \
1208 <                                                                                          cumulativeFlags.at("muons").at(currentDir),cumulativeFlags.at("photons").at(currentDir), \
1286 >            else if(currentHistogram.inputCollection == "muon-photon pairs") fill2DHistogram(histo,currentHistogram,muons.product(),photons.product(),
1287                                                                                            cumulativeFlags.at("muon-photon pairs").at(currentDir),scaleFactor);
1288              else if(currentHistogram.inputCollection == "electron-track pairs") fill2DHistogram(histo,currentHistogram,electrons.product(),tracks.product(),
1211 –                                                                                                cumulativeFlags.at("electrons").at(currentDir),cumulativeFlags.at("tracks").at(currentDir),
1289                                                                                                  cumulativeFlags.at("electron-track pairs").at(currentDir),scaleFactor);
1290              else if(currentHistogram.inputCollection == "muon-track pairs") fill2DHistogram(histo,currentHistogram,muons.product(),tracks.product(),
1291 <                                                                                            cumulativeFlags.at("muons").at(currentDir),cumulativeFlags.at("tracks").at(currentDir),
1291 >                                                                                            cumulativeFlags.at("muon-track pairs").at(currentDir),scaleFactor);
1292 >            else if(currentHistogram.inputCollection == "secondary muon-track pairs") fill2DHistogram(histo,currentHistogram,secMuons.product(),tracks.product(),
1293                                                                                              cumulativeFlags.at("muon-track pairs").at(currentDir),scaleFactor);
1294              else if(currentHistogram.inputCollection == "muon-tau pairs") fill2DHistogram(histo,currentHistogram,muons.product(),taus.product(),
1217 –                                                                                          cumulativeFlags.at("muons").at(currentDir),cumulativeFlags.at("taus").at(currentDir),
1295                                                                                            cumulativeFlags.at("muon-tau pairs").at(currentDir),scaleFactor);
1296              else if(currentHistogram.inputCollection == "tau-tau pairs") fill2DHistogram(histo,currentHistogram,taus.product(),taus.product(),
1220 –                                                                                         cumulativeFlags.at("taus").at(currentDir),cumulativeFlags.at("taus").at(currentDir),
1297                                                                                           cumulativeFlags.at("tau-tau pairs").at(currentDir),scaleFactor);
1298              else if(currentHistogram.inputCollection == "tau-track pairs") fill2DHistogram(histo,currentHistogram,taus.product(),tracks.product(),
1223 –                                                                                           cumulativeFlags.at("taus").at(currentDir),cumulativeFlags.at("tracks").at(currentDir),
1299                                                                                             cumulativeFlags.at("tau-track pairs").at(currentDir),scaleFactor);
1300              else if(currentHistogram.inputCollection == "electron-trigobj pairs") fill2DHistogram(histo,currentHistogram,electrons.product(),trigobjs.product(),
1226 –                                                                                                  cumulativeFlags.at("electrons").at(currentDir),cumulativeFlags.at("trigobjs").at(currentDir),
1301                                                                                                    cumulativeFlags.at("electron-trigobj pairs").at(currentDir),scaleFactor);
1302              else if(currentHistogram.inputCollection == "muon-trigobj pairs") fill2DHistogram(histo,currentHistogram,muons.product(),trigobjs.product(),
1229 –                                                                                              cumulativeFlags.at("muons").at(currentDir),cumulativeFlags.at("trigobjs").at(currentDir),
1303                                                                                                cumulativeFlags.at("muon-trigobj pairs").at(currentDir),scaleFactor);
1304              else if(currentHistogram.inputCollection == "events") fill2DHistogram(histo,currentHistogram,events.product(),cumulativeFlags.at("events").at(currentDir),scaleFactor);
1305              else if(currentHistogram.inputCollection == "taus") fill2DHistogram(histo,currentHistogram,taus.product(),cumulativeFlags.at("taus").at(currentDir),scaleFactor);
1306              else if(currentHistogram.inputCollection == "mets") fill2DHistogram(histo,currentHistogram,mets.product(),cumulativeFlags.at("mets").at(currentDir),scaleFactor);
1307              else if(currentHistogram.inputCollection == "tracks") fill2DHistogram(histo,currentHistogram,tracks.product(),cumulativeFlags.at("tracks").at(currentDir),scaleFactor);
1308              else if(currentHistogram.inputCollection == "track-event pairs") fill2DHistogram(histo,currentHistogram,tracks.product(),events.product(),
1236 –                                                                                             cumulativeFlags.at("tracks").at(currentDir),cumulativeFlags.at("events").at(currentDir),
1309                                                                                               cumulativeFlags.at("track-event pairs").at(currentDir),scaleFactor);
1310              else if(currentHistogram.inputCollection == "genjets") fill2DHistogram(histo,currentHistogram,genjets.product(),cumulativeFlags.at("genjets").at(currentDir),scaleFactor);
1311              else if(currentHistogram.inputCollection == "mcparticles") fill2DHistogram(histo,currentHistogram,mcparticles.product(),cumulativeFlags.at("mcparticles").at(currentDir),scaleFactor);
# Line 1254 | Line 1326 | OSUAnalysis::produce (edm::Event &event,
1326            string currentObject = objectsToPlot.at(currentObjectIndex);
1327            string objectToPlot = "";
1328  
1329 +          if (verbose_) clog << "Filling histogram of number of selected objects in collection: " << currentObject << endl;  
1330 +
1331            // Name of objectToPlot here must match the name specified in OSUAnalysis::OSUAnalysis().
1332            if(currentObject == "muon-muon pairs")                         objectToPlot = "dimuonPairs";
1333            else if(currentObject == "electron-electron pairs")            objectToPlot = "dielectronPairs";
# Line 1261 | Line 1335 | OSUAnalysis::produce (edm::Event &event,
1335            else if(currentObject == "electron-photon pairs")              objectToPlot = "electronPhotonPairs";
1336            else if(currentObject == "electron-jet pairs")                 objectToPlot = "electronJetPairs";
1337            else if(currentObject == "muon-jet pairs")                     objectToPlot = "muonJetPairs";
1338 <          else if(currentObject == "muon-event pairs")                     objectToPlot = "muonEventPairs";
1339 <          else if(currentObject == "muon-photon pairs")                     objectToPlot = "muonPhotonPairs";
1340 <          else if(currentObject == "photon-jet pairs")                     objectToPlot = "photonJetPairs";
1338 >          else if(currentObject == "muon-event pairs")                   objectToPlot = "muonEventPairs";
1339 >          else if(currentObject == "muon-photon pairs")                  objectToPlot = "muonPhotonPairs";
1340 >          else if(currentObject == "photon-jet pairs")                   objectToPlot = "photonJetPairs";
1341            else if(currentObject == "met-jet pairs")                      objectToPlot = "metJetPairs";
1342            else if(currentObject == "track-jet pairs")                    objectToPlot = "trackJetPairs";
1343            else if(currentObject == "jet-jet pairs")                      objectToPlot = "dijetPairs";
1344            else if(currentObject == "jet-secondary jet pairs")            objectToPlot = "jetSecondaryJetPairs";
1345            else if(currentObject == "secondary jets")                     objectToPlot = "secondaryJets";
1346 <          else if(currentObject == "secondary photons")                     objectToPlot = "secondaryPhotons";
1346 >          else if(currentObject == "secondary photons")                  objectToPlot = "secondaryPhotons";
1347            else if(currentObject == "electron-track pairs")               objectToPlot = "electronTrackPairs";
1348            else if(currentObject == "muon-track pairs")                   objectToPlot = "muonTrackPairs";
1349 +          else if(currentObject == "secondary muon-track pairs")         objectToPlot = "secondaryMuonTrackPairs";
1350            else if(currentObject == "muon-tau pairs")                     objectToPlot = "muonTauPairs";
1351            else if(currentObject == "tau-tau pairs")                      objectToPlot = "ditauPairs";
1352            else if(currentObject == "tau-track pairs")                    objectToPlot = "tauTrackPairs";
# Line 1279 | Line 1354 | OSUAnalysis::produce (edm::Event &event,
1354            else if(currentObject == "muon-secondary muon pairs")          objectToPlot = "muonSecondaryMuonPairs";
1355            else if(currentObject == "secondary muons")                    objectToPlot = "secondaryMuons";
1356            else if(currentObject == "muon-secondary jet pairs")           objectToPlot = "muonSecondaryJetPairs";
1357 <          else if(currentObject == "muon-secondary photon pairs")           objectToPlot = "muonSecondaryJetPairs";
1357 >          else if(currentObject == "muon-secondary photon pairs")        objectToPlot = "muonSecondaryJetPairs";
1358            else if(currentObject == "electron-secondary jet pairs")       objectToPlot = "electronSecondaryJetPairs";
1359            else if(currentObject == "photon-secondary jet pairs")         objectToPlot = "photonSecondaryJetPairs";
1360            else if(currentObject == "electron-secondary electron pairs")  objectToPlot = "electronSecondaryElectronPairs";
1361            else if(currentObject == "secondary electrons")                objectToPlot = "secondaryElectrons";
1362            else if(currentObject == "electron-trigobj pairs")             objectToPlot = "electronTrigobjPairs";
1363            else if(currentObject == "muon-trigobj pairs")                 objectToPlot = "muonTrigobjPairs";
1364 +          else if(currentObject == "electron-mcparticle pairs")          objectToPlot = "electronMCparticlePairs";
1365            else objectToPlot = currentObject;
1366  
1367            string tempCurrentObject = objectToPlot;
# Line 1293 | Line 1369 | OSUAnalysis::produce (edm::Event &event,
1369            string histoName = "num" + tempCurrentObject;
1370  
1371  
1372 <          if(find(objectsToCut.begin(), objectsToCut.end(), currentObject) != objectsToCut.end()) {
1372 >          if(find(objectsToPlot.begin(), objectsToPlot.end(), currentObject) != objectsToPlot.end()) {
1373              flagPair lastCutFlags = cumulativeFlags.at(currentObject).at(currentDir);
1374              int numToPlot = 0;
1375 <            for (uint currentFlag = 0; currentFlag != lastCutFlags.size(); currentFlag++){
1376 <              if(lastCutFlags.at(currentFlag).second) numToPlot++;
1375 >            for (uint iObj = 0; iObj != lastCutFlags.size(); iObj++){  // loop over all the objects  
1376 >              if(lastCutFlags.at(iObj).second) {
1377 >                numToPlot++;  
1378 >                if (verbose_>3) clog << "   Found object " << iObj << " in collection " << currentObject << " to plot." << endl;
1379 >              }
1380              }
1381  
1382              if(objectToPlot == "primaryvertexs"){
# Line 1305 | Line 1384 | OSUAnalysis::produce (edm::Event &event,
1384                oneDHists_.at(currentChannelIndex).at(currentCut).at(histoName+"AfterPileupCorrection")->Fill(primaryvertexs->size(),scaleFactor);
1385              }
1386              else {
1387 +              if (printEventInfo_) clog << "Number of selected " << objectToPlot << " to plot:  " << numToPlot << endl;  
1388                oneDHists_.at(currentChannelIndex).at(currentCut).at(histoName)->Fill(numToPlot,scaleFactor);
1389              }
1390            }
1391 +
1392          } // end for (uint currentObjectIndex = 0; currentObjectIndex != objectsToPlot.size(); currentObjectIndex++)
1393  
1394  
# Line 1323 | Line 1404 | OSUAnalysis::produce (edm::Event &event,
1404  
1405          if     (coll == "jets")                assignTreeBranch(brSpecs,jets.product(),          cumulativeFlags.at(coll).back());
1406          else if(coll == "secondary jets")      assignTreeBranch(brSpecs,jets.product(),          cumulativeFlags.at(coll).back());
1407 <        else if(coll == "secondary photons")      assignTreeBranch(brSpecs,photons.product(),          cumulativeFlags.at(coll).back());
1407 >        else if(coll == "secondary photons")   assignTreeBranch(brSpecs,photons.product(),       cumulativeFlags.at(coll).back());
1408          else if(coll == "muons")               assignTreeBranch(brSpecs,muons.product(),         cumulativeFlags.at(coll).back());
1409 <        else if(coll == "secondary muons")     assignTreeBranch(brSpecs,muons.product(),         cumulativeFlags.at(coll).back());
1409 >        else if(coll == "secondary muons")     assignTreeBranch(brSpecs,secMuons.product(),      cumulativeFlags.at(coll).back());
1410          else if(coll == "electrons")           assignTreeBranch(brSpecs,electrons.product(),     cumulativeFlags.at(coll).back());
1411          else if(coll == "secondary electrons") assignTreeBranch(brSpecs,electrons.product(),     cumulativeFlags.at(coll).back());
1412          else if(coll == "events")              assignTreeBranch(brSpecs,events.product(),        cumulativeFlags.at(coll).back());
# Line 1342 | Line 1423 | OSUAnalysis::produce (edm::Event &event,
1423          else if(coll == "stops"
1424                  && datasetType_ == "signalMC") assignTreeBranch(brSpecs,stops.product(),         cumulativeFlags.at(coll).back());
1425        } // end loop over branches
1426 +      // set the evtLong, runInt, and lumiInt variables separately, since they are not type float  
1427 +      BNTreeBranchVals_evtLong_ = events->at(0).evt;
1428 +      BNTreeBranchVals_runInt_  = events->at(0).run;
1429 +      BNTreeBranchVals_lumiInt_ = events->at(0).lumi;
1430  
1431        if (!BNTrees_.at(currentChannelIndex)) { clog << "ERROR:  Undefined BNTree.  Will likely seg fault." << endl; }
1432        BNTrees_.at(currentChannelIndex)->Fill();  // only fill if event has passed cuts
# Line 1355 | Line 1440 | OSUAnalysis::produce (edm::Event &event,
1440  
1441    event.put (channelDecisions, "channelDecisions");
1442  
1443 < } // end void OSUAnalysis::analyze (const edm::Event &event, const edm::EventSetup &setup)
1443 >  isFirstEvent_ = false;  
1444 >
1445 >  if (verbose_) clog << "Finished OSUAnalysis::produce." << endl;  
1446 >
1447 > } // end void OSUAnalysis::produce (const edm::Event &event, const edm::EventSetup &setup)
1448  
1449  
1450  
# Line 1383 | Line 1472 | OSUAnalysis::evaluateComparison (string
1472    else if(comparison == "<")  return testValue <  cutValue;
1473    else if(comparison == "<=") return testValue <= cutValue;
1474    else if(comparison == "==") return testValue == cutValue;
1475 <  else if(comparison == "=") return testValue == cutValue;
1475 >  else if(comparison == "=")  return testValue == cutValue;
1476    else if(comparison == "!=") return testValue != cutValue;
1477    else {clog << "WARNING: invalid comparison operator '" << comparison << "'\n"; return false;}
1478  
# Line 1609 | Line 1698 | OSUAnalysis::valueLookup (const BNjet* o
1698    }
1699  
1700  
1701 <  else{clog << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
1701 >  else{clog << "WARNING: invalid jet variable '" << variable << "'\n"; value = -999;}
1702  
1703    value = applyFunction(function, value);
1704  
# Line 1784 | Line 1873 | OSUAnalysis::valueLookup (const BNmuon*
1873  
1874    //user-defined variables
1875    else if(variable == "looseID") {
1876 <    value = object->pt > 10 &&
1876 >    value = object->pt > 10 &&
1877        (object->isGlobalMuon  > 0 ||
1878         object->isTrackerMuon > 0);
1879    }
1880 +
1881 +  else if(variable == "looseIDGlobalMuon") {
1882 +    value = object->pt > 10 &&
1883 +      object->isGlobalMuon  > 0;
1884 +  }
1885    else if(variable == "correctedD0VertexErr") value =  hypot (object->tkD0err, hypot (chosenVertex ()->xError, chosenVertex ()->yError));
1886    else if(variable == "correctedD0VertexSig") value =  object->correctedD0Vertex / hypot (object->tkD0err, hypot (chosenVertex ()->xError, chosenVertex ()->yError));
1887    else if(variable == "detIso") value = (object->trackIsoDR03) / object->pt;
# Line 1803 | Line 1897 | OSUAnalysis::valueLookup (const BNmuon*
1897      else
1898        value = -999;
1899    }
1900 <
1901 <
1900 >  else if(variable == "ptPlusMet") {
1901 >    // Calculate the magnitude of the vector sum of the muon pT and the Met.  
1902 >    if (const BNmet *met = chosenMET ())
1903 >      {
1904 >        TVector2 p2Met;
1905 >        TVector2 p2Muon;
1906 >        p2Met. SetMagPhi(   met->pt,    met->phi);
1907 >        p2Muon.SetMagPhi(object->pt, object->phi);  
1908 >        TVector2 p2MetElec = p2Met + p2Muon;
1909 >        value = p2MetElec.Mod();  
1910 >      }
1911 >    else
1912 >      value = -999;
1913 >  }
1914  
1915    else if(variable == "correctedD0VertexInEBPlus"){
1916      if(fabs(object->eta) < 0.8 && object->eta > 0) value = object->correctedD0Vertex;
# Line 1989 | Line 2095 | OSUAnalysis::valueLookup (const BNmuon*
2095  
2096  
2097  
2098 <  else{clog << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
2098 >  else{clog << "WARNING: invalid muon variable '" << variable << "'\n"; value = -999;}
2099  
2100    value = applyFunction(function, value);
2101  
# Line 2176 | Line 2282 | OSUAnalysis::valueLookup (const BNelectr
2282        value = -999;
2283    }
2284  
2285 +  else if(variable == "ptPlusMet") {
2286 +    // Calculate the magnitude of the vector sum of the electron pT and the Met.  
2287 +    if (const BNmet *met = chosenMET ())
2288 +      {
2289 +        TVector2 p2Met;
2290 +        TVector2 p2Elec;
2291 +        p2Met. SetMagPhi(   met->pt,    met->phi);
2292 +        p2Elec.SetMagPhi(object->pt, object->phi);  
2293 +        TVector2 p2MetElec = p2Met + p2Elec;
2294 +        value = p2MetElec.Mod();  
2295 +      }
2296 +    else
2297 +      value = -999;
2298 +  }
2299 +
2300    else if(variable == "correctedD0VertexEEPositiveChargeLowPt"){
2301      if(fabs(object->eta) > 1.479 && object->charge > 0 && object->pt > 45) value = object->correctedD0Vertex;
2302      else value = -999;
# Line 2287 | Line 2408 | OSUAnalysis::valueLookup (const BNelectr
2408        }
2409    }
2410  
2411 <  else if(variable == "looseID"){
2411 >  else if(variable == "looseID_MVA"){
2412      value = object->pt > 10
2413        && object->mvaNonTrigV0 > 0;
2414        }
# Line 2421 | Line 2542 | OSUAnalysis::valueLookup (const BNelectr
2542  
2543  
2544  
2545 <  else{clog << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
2545 >  else{clog << "WARNING: invalid electron variable '" << variable << "'\n"; value = -999;}
2546  
2547    value = applyFunction(function, value);
2548  
# Line 2439 | Line 2560 | OSUAnalysis::valueLookup (const BNevent*
2560    else if(variable == "pthat") value = object->pthat;
2561    else if(variable == "qScale") value = object->qScale;
2562    else if(variable == "alphaQCD") value = object->alphaQCD;
2442 –  else if(variable == "Ht") value = getHt(jets.product());
2563    else if(variable == "alphaQED") value = object->alphaQED;
2564    else if(variable == "scalePDF") value = object->scalePDF;
2565    else if(variable == "x1") value = object->x1;
# Line 2510 | Line 2630 | OSUAnalysis::valueLookup (const BNevent*
2630    else if(variable == "electronScaleFactor") value = electronScaleFactor_;
2631    else if(variable == "stopCTauScaleFactor") value = stopCTauScaleFactor_;
2632    else if(variable == "bTagScaleFactor") value = bTagScaleFactor_;
2633 +
2634 +  else if(variable == "unfilteredHt") value = getHt(jets.product());
2635    else if(variable == "ht") value = chosenHT ();
2636 +
2637    else if(variable == "leadMuPairInvMass"){
2638      pair<const BNmuon *, const BNmuon *> muPair = leadMuonPair ();
2639      TLorentzVector p0 (muPair.first->px, muPair.first->py, muPair.first->pz, muPair.first->energy),
# Line 2537 | Line 2660 | OSUAnalysis::valueLookup (const BNevent*
2660      pt0 += pt1;
2661      value = pt0.Mod ();
2662    }
2663 <  else{clog << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
2663 >  else{clog << "WARNING: invalid event variable '" << variable << "'\n"; value = -999;}
2664  
2665    value = applyFunction(function, value);
2666  
# Line 2592 | Line 2715 | OSUAnalysis::valueLookup (const BNtau* o
2715    else if(variable == "leadingTrackValid") value = object->leadingTrackValid;
2716  
2717    else if (variable == "looseHadronicID") {
2718 <    value = object->pt > 10
2719 <      && object->eta < 2.3
2718 >    //criteria taken from http://cms.cern.ch/iCMS/jsp/db_notes/showNoteDetails.jsp?noteID=CMS%20AN-2011/019
2719 >    value = object->pt > 30
2720 >      && fabs(object->eta) < 2.3
2721        && object->HPSbyLooseCombinedIsolationDeltaBetaCorr > 0
2722        && object->HPSdecayModeFinding > 0
2723        && object->HPSagainstElectronLoose > 0
# Line 2645 | Line 2769 | OSUAnalysis::valueLookup (const BNtau* o
2769    }
2770  
2771  
2772 <  else{clog << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
2772 >  else{clog << "WARNING: invalid tau variable '" << variable << "'\n"; value = -999;}
2773  
2774    value = applyFunction(function, value);
2775  
# Line 2719 | Line 2843 | OSUAnalysis::valueLookup (const BNmet* o
2843    else if(variable == "pfT1jet10pt") value = object->pfT1jet10pt;
2844    else if(variable == "pfT1jet10phi") value = object->pfT1jet10phi;
2845  
2846 <  else{clog << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
2846 >  else{clog << "WARNING: invalid met variable '" << variable << "'\n"; value = -999;}
2847  
2848    value = applyFunction(function, value);
2849  
# Line 2764 | Line 2888 | OSUAnalysis::valueLookup (const BNtrack*
2888    else if(variable == "nHitsMissingInner")  value = object->nHitsMissingInner;
2889    else if(variable == "nHitsMissingMiddle") value = object->nHitsMissingMiddle;
2890    else if(variable == "depTrkRp3")          value = object->depTrkRp3;
2891 <  else if(variable == "trkRelIsoRp3")       value = (object->depTrkRp3 - object->pt) / object->pt;
2892 <  else if(variable == "trkRelIsoRp5")       value = (object->depTrkRp5 - object->pt) / object->pt;
2891 >  else if(variable == "trkRelIsoRp3")     { value = (object->depTrkRp3 - object->pt) / object->pt; if (value<0) value = 0; }
2892 >  else if(variable == "trkRelIsoRp5")     { value = (object->depTrkRp5 - object->pt) / object->pt; if (value<0) value = 0; }
2893    else if(variable == "depEcalRp3")         value = object->depEcalRp3;
2894    else if(variable == "depHcalRp3")         value = object->depHcalRp3;
2895    else if(variable == "depHoRp3")           value = object->depHoRp3;
# Line 2789 | Line 2913 | OSUAnalysis::valueLookup (const BNtrack*
2913    else if(variable == "dZwrtBS") value = object->dZ - events->at(0).BSz;
2914    else if(variable == "depTrkRp5MinusPt"){
2915      if ( (object->depTrkRp5 - object->pt) < 0 ) {
2916 + //       clog << "Warning:  found track with depTrkRp5 < pt:  depTrkRp5=" << object->depTrkRp5
2917 + //         << "; pt=" << object->pt
2918 + //         << "; object->depTrkRp5 - object->pt = " << object->depTrkRp5 - object->pt
2919 + //         << endl;  
2920             value = 0;
2921           }
2922           else value =  (object->depTrkRp5 - object->pt);
# Line 2811 | Line 2939 | OSUAnalysis::valueLookup (const BNtrack*
2939    else if(variable == "caloTotDeltaRp5ByP")         value = ((object->caloHadDeltaRp5 + object->caloEMDeltaRp5)/pMag);
2940    else if(variable == "caloTotDeltaRp5RhoCorr")     value = getTrkCaloTotRhoCorr(object);
2941    else if(variable == "caloTotDeltaRp5ByPRhoCorr")  value = getTrkCaloTotRhoCorr(object) / pMag;
2942 +  else if(variable == "depTrkRp5RhoCorr")           value = getTrkDepTrkRp5RhoCorr(object);
2943 +  else if(variable == "depTrkRp3RhoCorr")           value = getTrkDepTrkRp3RhoCorr(object);
2944 +
2945 +  else if(variable == "depTrkRp5MinusPtRhoCorr")    {
2946 +    if ( (getTrkDepTrkRp5RhoCorr(object) - object->pt) < 0 ) value = 0;
2947 +    else {value = (getTrkDepTrkRp5RhoCorr(object) - object->pt );}
2948 +  }
2949 +  
2950 +  else if(variable == "depTrkRp3MinusPtRhoCorr")    
2951 +    {
2952 +      if ( (getTrkDepTrkRp3RhoCorr(object) - object->pt) < 0 ) value = 0;
2953 +      else {value = (getTrkDepTrkRp3RhoCorr(object) - object->pt );}
2954 +    }
2955 +
2956    else if(variable == "isIso")                      value = getTrkIsIso(object, tracks.product());
2957    else if(variable == "isMatchedDeadEcal")          value = getTrkIsMatchedDeadEcal(object);
2958    else if(variable == "ptErrorByPt")                value = (object->ptError/object->pt);
# Line 2835 | Line 2977 | OSUAnalysis::valueLookup (const BNtrack*
2977      value = vz - (vx * px + vy * py)/pt * (pz/pt);
2978    }
2979  
2980 +  else if(variable == "deltaRMinSubLeadJet") {
2981 +    // calculate minimum deltaR between track and any other subleading jet  
2982 +    double trkJetDeltaRMin = 99.;  
2983 +    if (!jets.product()) clog << "ERROR:  cannot find deltaRMinSubLeadJet because jets collection is not initialized." << endl;
2984 +    for (uint ijet = 0; ijet<jets->size(); ijet++) {
2985 +      string empty = "";  
2986 +      double isSubLeadingJet = valueLookup(&jets->at(ijet), "disappTrkSubLeadingJetID", "", empty);  
2987 +      if (!isSubLeadingJet) continue;  // only consider jets that pass the subleading jet ID criteria  
2988 +      double jetEta = valueLookup(&jets->at(ijet), "eta", "", empty);
2989 +      double jetPhi = valueLookup(&jets->at(ijet), "phi", "", empty);
2990 +      double trkJetDeltaR = deltaR(object->eta, object->phi, jetEta, jetPhi);  
2991 +      if (trkJetDeltaR < trkJetDeltaRMin) trkJetDeltaRMin = trkJetDeltaR;
2992 +    }
2993 +    value = trkJetDeltaRMin;  
2994 +  }  
2995 +  
2996 +  else if(variable == "deltaRMinElecLooseMvaId") {
2997 +    // calculate minimum deltaR between track and any other electron passing loose mva ID, i.e., mvaNonTrigV0 > 0
2998 +    double trkElecDeltaRMin = 99.;  
2999 +    if (!electrons.product()) clog << "ERROR:  cannot find deltaRMinElecLooseMvaId because electrons collection is not initialized." << endl;
3000 +    for (uint ielec = 0; ielec<electrons->size(); ielec++) {
3001 +      string empty = "";  
3002 +      double mvaNonTrigV0 = valueLookup(&electrons->at(ielec), "mvaNonTrigV0", "", empty);  
3003 +      if (mvaNonTrigV0 < 0) continue;  // only consider electrons with mvaNonTrigV0 > 0  
3004 +      double elecEta = valueLookup(&electrons->at(ielec), "eta", "", empty);
3005 +      double elecPhi = valueLookup(&electrons->at(ielec), "phi", "", empty);
3006 +      double trkElecDeltaR = deltaR(object->eta, object->phi, elecEta, elecPhi);  
3007 +      if (trkElecDeltaR < trkElecDeltaRMin) trkElecDeltaRMin = trkElecDeltaR;
3008 +    }
3009 +    value = trkElecDeltaRMin;  
3010 +  }  
3011 +
3012 +  else if(variable == "deltaRMinMuonLooseId") {
3013 +    // calculate minimum deltaR between track and any other loose-Id muon
3014 +    double trkMuonDeltaRMin = 99.;  
3015 +    if (!muons.product()) clog << "ERROR:  cannot find deltaRMinMuonLooseId because muons collection is not initialized." << endl;
3016 +    for (uint imuon = 0; imuon<muons->size(); imuon++) {
3017 +      string empty = "";  
3018 +      double isLooseIdMuon = valueLookup(&muons->at(imuon), "looseID", "", empty);  
3019 +      if (!isLooseIdMuon) continue;  // only consider muons that pass the looseID criteria  
3020 +      double muonEta = valueLookup(&muons->at(imuon), "eta", "", empty);
3021 +      double muonPhi = valueLookup(&muons->at(imuon), "phi", "", empty);
3022 +      double trkMuonDeltaR = deltaR(object->eta, object->phi, muonEta, muonPhi);  
3023 +      if (trkMuonDeltaR < trkMuonDeltaRMin) trkMuonDeltaRMin = trkMuonDeltaR;
3024 +    }
3025 +    value = trkMuonDeltaRMin;  
3026 +  }  
3027 +
3028 +  else if(variable == "isPassMuonLooseIDVeto") {
3029 +
3030 +    // calculate minimum deltaR between track and any other loose-Id
3031 +    double trkMuonDeltaRMin = 99.;
3032 +    if (!muons.product()) clog << "ERROR:  cannot find deltaRMinMuonLooseId because muons collection is not initialized." << endl;
3033 +    for (uint imuon = 0; imuon<muons->size(); imuon++) {
3034 +      string empty = "";
3035 +      double isLooseIdMuon = valueLookup(&muons->at(imuon), "looseID", "", empty);
3036 +      if (!isLooseIdMuon) continue;  // only consider muons that pass the looseID                                
3037 +        double muonEta = valueLookup(&muons->at(imuon), "eta", "", empty);
3038 +        double muonPhi = valueLookup(&muons->at(imuon), "phi", "", empty);
3039 +        double trkMuonDeltaR = deltaR(object->eta, object->phi, muonEta, muonPhi);
3040 +        if (trkMuonDeltaR < trkMuonDeltaRMin) trkMuonDeltaRMin = trkMuonDeltaR;
3041 +    }
3042 +    if (trkMuonDeltaRMin  < 0.15) value = 1;
3043 +    if (trkMuonDeltaRMin  > 0.15) value = 0;
3044 +  }
3045 +
3046 +
3047 +  
3048 +  else if(variable == "deltaRMinSecMuonLooseIdGlobal") {
3049 +    // calculate minimum deltaR between track and any other loose-Id muon
3050 +    double trkMuonDeltaRMin = 99.;  
3051 +    if (!secMuons.product()) clog << "ERROR:  cannot find deltaRMinSecMuonLooseIdGlobal because secMuons collection is not initialized." << endl;
3052 +    for (uint imuon = 0; imuon<secMuons->size(); imuon++) {  
3053 +      string empty = "";  
3054 +      double isLooseIdMuon = valueLookup(&secMuons->at(imuon), "looseIDGlobalMuon", "", empty);  
3055 +      if (!isLooseIdMuon) continue;  // only consider muons that pass the looseIDGlobal criteria  
3056 +      double muonEta = valueLookup(&secMuons->at(imuon), "eta", "", empty);
3057 +      double muonPhi = valueLookup(&secMuons->at(imuon), "phi", "", empty);
3058 +      double trkMuonDeltaR = deltaR(object->eta, object->phi, muonEta, muonPhi);  
3059 +      if (trkMuonDeltaR < trkMuonDeltaRMin) trkMuonDeltaRMin = trkMuonDeltaR;
3060 +    }
3061 +    value = trkMuonDeltaRMin;  
3062 +  }  
3063 +  
3064 +  else if(variable == "deltaRMinTauLooseHadronicId") {
3065 +    // calculate minimum deltaR between track and any other tau passing loose hadronic ID  
3066 +    double trkTauDeltaRMin = 99.;  
3067 +    if (!taus.product()) clog << "ERROR:  cannot find deltaRMinTauLooseHadronicId because taus collection is not initialized." << endl;
3068 +    for (uint itau = 0; itau<taus->size(); itau++) {
3069 +      string empty = "";  
3070 +      double isIdTau = valueLookup(&taus->at(itau), "looseHadronicID", "", empty);  
3071 +      if (!isIdTau) continue;  // only consider taus that pass the loose hadronic ID criteria  
3072 +      double tauEta = valueLookup(&taus->at(itau), "eta", "", empty);
3073 +      double tauPhi = valueLookup(&taus->at(itau), "phi", "", empty);
3074 +      double trkTauDeltaR = deltaR(object->eta, object->phi, tauEta, tauPhi);  
3075 +      if (trkTauDeltaR < trkTauDeltaRMin) trkTauDeltaRMin = trkTauDeltaR;
3076 +    }
3077 +    value = trkTauDeltaRMin;  
3078 +  }  
3079  
3080    else if(variable == "genDeltaRLowest") value = getGenDeltaRLowest(object);
3081  
# Line 2883 | Line 3124 | OSUAnalysis::valueLookup (const BNtrack*
3124  
3125  
3126  
3127 <  else{clog << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
3127 >  else{clog << "WARNING: invalid track variable '" << variable << "'\n"; value = -999;}
3128  
3129    value = applyFunction(function, value);
3130  
# Line 2913 | Line 3154 | OSUAnalysis::valueLookup (const BNgenjet
3154    else if(variable == "charge") value = object->charge;
3155  
3156  
3157 <  else{clog << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
3157 >  else{clog << "WARNING: invalid genjet variable '" << variable << "'\n"; value = -999;}
3158  
3159    value = applyFunction(function, value);
3160  
# Line 3047 | Line 3288 | OSUAnalysis::valueLookup (const BNmcpart
3288    }
3289  
3290  
3291 <  else{clog << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
3291 >  else{clog << "WARNING: invalid mcparticle variable '" << variable << "'\n"; value = -999;}
3292  
3293    value = applyFunction(function, value);
3294  
# Line 3076 | Line 3317 | OSUAnalysis::valueLookup (const BNprimar
3317    else if(variable == "isGood") value = object->isGood;
3318  
3319  
3320 <  else{clog << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
3320 >  else{clog << "WARNING: invalid primaryvertex variable '" << variable << "'\n"; value = -999;}
3321  
3322    value = applyFunction(function, value);
3323  
# Line 3094 | Line 3335 | OSUAnalysis::valueLookup (const BNbxlumi
3335    else if(variable == "bx_LUMI_now") value = object->bx_LUMI_now;
3336  
3337  
3338 <  else{clog << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
3338 >  else{clog << "WARNING: invalid bxlumi variable '" << variable << "'\n"; value = -999;}
3339  
3340    value = applyFunction(function, value);
3341  
# Line 3227 | Line 3468 | OSUAnalysis::valueLookup (const BNphoton
3468    }
3469  
3470  
3471 <  else{clog << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
3471 >  else{clog << "WARNING: invalid photon variable '" << variable << "'\n"; value = -999;}
3472  
3473    value = applyFunction(function, value);
3474  
# Line 3251 | Line 3492 | OSUAnalysis::valueLookup (const BNsuperc
3492    else if(variable == "theta") value = object->theta;
3493  
3494  
3495 <  else{clog << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
3495 >  else{clog << "WARNING: invalid supercluster variable '" << variable << "'\n"; value = -999;}
3496  
3497    value = applyFunction(function, value);
3498  
# Line 3285 | Line 3526 | OSUAnalysis::valueLookup (const BNtrigob
3526        stringValue = "none";  // stringValue should only be empty if value is filled
3527    }
3528  
3529 <  else{clog << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
3529 >  else{clog << "WARNING: invalid trigobj variable '" << variable << "'\n"; value = -999;}
3530  
3531    value = applyFunction(function, value);
3532  
# Line 3356 | Line 3597 | OSUAnalysis::valueLookup (const BNmuon*
3597        value = object2->correctedD0;
3598      }
3599  
3600 <  else{clog << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
3600 >  else{clog << "WARNING: invalid muon-muon pair variable '" << variable << "'\n"; value = -999;}
3601  
3602    value = applyFunction(function, value);
3603  
# Line 3403 | Line 3644 | OSUAnalysis::valueLookup (const BNmuon*
3644        TVector3 threeVector2(object2->px, object2->py, object2->pz);
3645        value = (pi-threeVector1.Angle(threeVector2));
3646      }
3647 <  else{clog << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
3647 >  else{clog << "WARNING: invalid muon-photon pair variable '" << variable << "'\n"; value = -999;}
3648  
3649    value = applyFunction(function, value);
3650  
3651    return value;
3652 < }
3652 > } // end muon-photon pair valueLookup
3653 >
3654  
3655   //!electron-photon pair valueLookup
3656   double
# Line 3449 | Line 3691 | OSUAnalysis::valueLookup (const BNelectr
3691        TVector3 threeVector2(object2->px, object2->py, object2->pz);
3692        value = (pi-threeVector1.Angle(threeVector2));
3693      }
3694 <  else{clog << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
3694 >  else{clog << "WARNING: invalid electron-photon pair variable '" << variable << "'\n"; value = -999;}
3695  
3696    value = applyFunction(function, value);
3697  
3698    return value;
3699 < }
3699 > } // end electron-photon pair valueLookup
3700 >
3701  
3702   //!electron-electron pair valueLookup
3703   double
# Line 3505 | Line 3748 | OSUAnalysis::valueLookup (const BNelectr
3748      value = object2->correctedD0;
3749    }
3750  
3751 <  else{clog << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
3751 >  else{clog << "WARNING: invalid electron-electron pair variable '" << variable << "'\n"; value = -999;}
3752  
3753    value = applyFunction(function, value);
3754  
3755    return value;
3756 < }
3756 > } // end electron-electron pair valueLookup
3757 >
3758  
3759   //!electron-muon pair valueLookup
3760   double
# Line 3572 | Line 3816 | OSUAnalysis::valueLookup (const BNelectr
3816    else if(variable == "muonRelPFdBetaIso"){
3817      value = (object2->pfIsoR04SumChargedHadronPt + max(0.0, object2->pfIsoR04SumNeutralHadronEt + object2->pfIsoR04SumPhotonEt - 0.5*object2->pfIsoR04SumPUPt)) / object2->pt;
3818    }
3819 <  else{clog << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
3819 >  else{clog << "WARNING: invalid electron-muon pair variable '" << variable << "'\n"; value = -999;}
3820    value = applyFunction(function, value);
3821  
3822    return value;
3823   } // end electron-muon pair valueLookup
3824  
3825 <
3825 >
3826   //!electron-jet pair valueLookup
3827   double
3828   OSUAnalysis::valueLookup (const BNelectron* object1, const BNjet* object2, string variable, string function, string &stringValue){
# Line 3612 | Line 3856 | OSUAnalysis::valueLookup (const BNelectr
3856      value = object1->charge*object2->charge;
3857    }
3858  
3859 <  else{clog << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
3859 >  else{clog << "WARNING: invalid electron-jet pair variable '" << variable << "'\n"; value = -999;}
3860 >  value = applyFunction(function, value);
3861 >
3862 >  return value;
3863 > }
3864 >
3865 > //!electron-mcparticle pair valueLookup
3866 > double
3867 > OSUAnalysis::valueLookup (const BNelectron* object1, const BNmcparticle* object2, string variable, string function, string &stringValue){
3868 >
3869 >  double value = 0.0;
3870 >
3871 >  if(variable == "deltaPhi") value = fabs(deltaPhi(object1->phi,object2->phi));
3872 >  else if(variable == "deltaEta") value = fabs(object1->eta - object2->eta);
3873 >  else if(variable == "deltaR") value = deltaR(object1->eta,object1->phi,object2->eta,object2->phi);
3874 >  else if(variable == "threeDAngle")
3875 >    {
3876 >      TVector3 threeVector1(object1->px, object1->py, object1->pz);
3877 >      TVector3 threeVector2(object2->px, object2->py, object2->pz);
3878 >      value = (threeVector1.Angle(threeVector2));
3879 >    }
3880 >  else if(variable == "chargeProduct"){
3881 >    value = object1->charge*object2->charge;
3882 >  }
3883 >
3884 >  else{clog << "WARNING: invalid electron-mcparticle variable '" << variable << "'\n"; value = -999;}
3885    value = applyFunction(function, value);
3886  
3887    return value;
3888   }
3889  
3890 +
3891   //!photon-jet pair valueLookup
3892   double
3893   OSUAnalysis::valueLookup (const BNphoton* object1, const BNjet* object2, string variable, string function, string &stringValue){
# Line 3648 | Line 3918 | OSUAnalysis::valueLookup (const BNphoton
3918        TVector3 threeVector2(object2->px, object2->py, object2->pz);
3919        value = (threeVector1.Angle(threeVector2));
3920      }
3921 <  else{clog << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
3921 >  else{clog << "WARNING: invalid photon-jet pair variable '" << variable << "'\n"; value = -999;}
3922    value = applyFunction(function, value);
3923  
3924    return value;
# Line 3663 | Line 3933 | OSUAnalysis::valueLookup (const BNtrack*
3933    if(variable == "deltaPhi") value = fabs(deltaPhi(object1->phi,object2->phi));
3934    else if(variable == "deltaR") value = deltaR(object1->eta,object1->phi,object2->eta,object2->phi);
3935  
3936 <  else{clog << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
3936 >  else{clog << "WARNING: invalid track-jet pair variable '" << variable << "'\n"; value = -999;}
3937    value = applyFunction(function, value);
3938  
3939    return value;
# Line 3680 | Line 3950 | OSUAnalysis::valueLookup (const BNmet* o
3950  
3951    if(variable == "deltaPhi") value = fabs(deltaPhi(object1->phi,object2->phi));
3952  
3953 <  else{clog << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
3953 >  else{clog << "WARNING: invalid met-jet pair variable '" << variable << "'\n"; value = -999;}
3954    value = applyFunction(function, value);
3955  
3956    return value;
# Line 3726 | Line 3996 | OSUAnalysis::valueLookup (const BNmuon*
3996      value = object1->charge*object2->charge;
3997    }
3998  
3999 <  else{clog << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
3999 >  else{clog << "WARNING: invalid muon-jet pair variable '" << variable << "'\n"; value = -999;}
4000    value = applyFunction(function, value);
4001  
4002    return value;
4003 < }
4003 > } // end muon-jet pair valueLookup
4004 >
4005  
4006   //!muon-event valueLookup
4007   double
# Line 3744 | Line 4015 | OSUAnalysis::valueLookup (const BNmuon*
4015    else if(variable == "Ht") value = getHt(jets.product());
4016    else if(variable == "pthat")   value = object2->pthat;
4017    else if(variable == "relPFdBetaIso") value = (object1->pfIsoR04SumChargedHadronPt + max(0.0, object1->pfIsoR04SumNeutralHadronEt + object1->pfIsoR04SumPhotonEt - 0.5*object1->pfIsoR04SumPUPt)) / object1->pt;
4018 <  else{clog << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
4018 >  else{clog << "WARNING: invalid muon-event pair variable '" << variable << "'\n"; value = -999;}
4019    value = applyFunction(function, value);
4020  
4021    return value;
# Line 3779 | Line 4050 | OSUAnalysis::valueLookup (const BNjet* o
4050      value = object1->charge*object2->charge;
4051    }
4052  
4053 <  else{clog << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
4053 >  else{clog << "WARNING: invalid jet-jet pair variable '" << variable << "'\n"; value = -999;}
4054    value = applyFunction(function, value);
4055  
4056    return value;
# Line 3795 | Line 4066 | OSUAnalysis::valueLookup (const BNelectr
4066    if(variable == "deltaPhi") value = fabs(deltaPhi(object1->phi,object2->phi));
4067    else if(variable == "deltaEta") value = fabs(object1->eta - object2->eta);
4068    else if(variable == "deltaR") value = deltaR(object1->eta,object1->phi,object2->eta,object2->phi);
4069 +  else if(variable == "deltaRLooseMvaId") {
4070 +    // only consider electrons that pass "loose MVA id", i.e., mvaNonTrigV0 > 0;
4071 +    // otherwise return very large value (99)  
4072 +    if (object1->mvaNonTrigV0>0) value = deltaR(object1->eta,object1->phi,object2->eta,object2->phi);
4073 +    else                         value = 99.;  
4074 +  }
4075    else if(variable == "invMass"){
4076      fourVector1.SetPtEtaPhiM(object1->pt, object1->eta, object1->phi, electronMass);
4077      fourVector2.SetPtEtaPhiM(object2->pt, object2->eta, object2->phi, electronMass );
# Line 3804 | Line 4081 | OSUAnalysis::valueLookup (const BNelectr
4081    else if(variable == "chargeProduct"){
4082      value = object1->charge*object2->charge;
4083    }
4084 <  else{clog << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
4084 >  else{clog << "WARNING: invalid electron-track pair variable '" << variable << "'\n"; value = -999;}
4085    value = applyFunction(function, value);
4086    return value;
4087  
# Line 3814 | Line 4091 | OSUAnalysis::valueLookup (const BNelectr
4091   //!muon-track pair valueLookup
4092   double
4093   OSUAnalysis::valueLookup (const BNmuon* object1, const BNtrack* object2, string variable, string function, string &stringValue){
3817 –  double pionMass = 0.140;
3818 –  double muonMass = 0.106;
4094    double value = 0.0;
3820 –  TLorentzVector fourVector1(0, 0, 0, 0);
3821 –  TLorentzVector fourVector2(0, 0, 0, 0);
4095    if(variable == "deltaPhi") value = fabs(deltaPhi(object1->phi,object2->phi));
4096    else if(variable == "deltaEta") value = fabs(object1->eta - object2->eta);
4097    else if(variable == "deltaR") value = deltaR(object1->eta,object1->phi,object2->eta,object2->phi);
4098 +  else if(variable == "deltaRLooseID") {
4099 +    // only consider muons that pass looseId criteria; otherwise return very large value (99.)  
4100 +    string empty = "";  
4101 +    double isLooseId = valueLookup(object1, "looseID", "", empty);    
4102 +    if (isLooseId) value = deltaR(object1->eta,object1->phi,object2->eta,object2->phi);
4103 +    else           value = 99.;  
4104 +  }
4105 +  else if(variable == "deltaRGlobalMuon") {
4106 +    // only consider muons that pass looseId criteria; otherwise return very large value (99.)  
4107 +    if (object1->isGlobalMuon) value = deltaR(object1->eta,object1->phi,object2->eta,object2->phi);
4108 +    else                       value = 99.;  
4109 +  }
4110    else if(variable == "invMass"){
4111 +    double pionMass = 0.140;
4112 +    double muonMass = 0.106;
4113 +    TLorentzVector fourVector1(0, 0, 0, 0);
4114 +    TLorentzVector fourVector2(0, 0, 0, 0);
4115      fourVector1.SetPtEtaPhiM(object1->pt, object1->eta, object1->phi, muonMass);
4116      fourVector2.SetPtEtaPhiM(object2->pt, object2->eta, object2->phi, pionMass );
3828 –
4117      value = (fourVector1 + fourVector2).M();
4118    }
4119    else if(variable == "chargeProduct"){
4120      value = object1->charge*object2->charge;
4121    }
4122  
4123 <  else{clog << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
4123 >  else{clog << "WARNING: invalid muon-track pair variable '" << variable << "'\n"; value = -999;}
4124    value = applyFunction(function, value);
4125    return value;
4126   }
# Line 3854 | Line 4142 | OSUAnalysis::valueLookup (const BNtau* o
4142      value = object1->charge*object2->charge;
4143    }
4144  
4145 <  else{clog << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
4145 >  else{clog << "WARNING: invalid tau-tau pair variable '" << variable << "'\n"; value = -999;}
4146    value = applyFunction(function, value);
4147    return value;
4148   }
# Line 3876 | Line 4164 | OSUAnalysis::valueLookup (const BNmuon*
4164      value = object1->charge*object2->charge;
4165    }
4166  
4167 <  else{clog << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
4167 >  else{clog << "WARNING: invalid muon-tau pair variable '" << variable << "'\n"; value = -999;}
4168    value = applyFunction(function, value);
4169    return value;
4170   }
# Line 3887 | Line 4175 | OSUAnalysis::valueLookup (const BNtau* o
4175    double value = 0.0;
4176    if(variable == "deltaPhi") value = fabs(deltaPhi(object1->phi,object2->phi));
4177    else if(variable == "deltaR") value = deltaR(object1->eta,object1->phi,object2->eta,object2->phi);
4178 +  else if(variable == "deltaRLooseHadronicID") {
4179 +    // only consider tau's that pass the loose hadronic ID criteria; otherwise return very large value (99)  
4180 +    string empty = "";  
4181 +    double isLooseHadronicID = valueLookup(object1, "looseHadronicID", "", empty);    
4182 +  
4183 +    if (isLooseHadronicID) value = deltaR(object1->eta,object1->phi,object2->eta,object2->phi);
4184 +    else                   value = 99.;  
4185 +  }
4186 +  else if(variable == "deltaEta") value = fabs(object1->eta - object2->eta);
4187 +  else if(variable == "invMass"){
4188 +    double tauMass = 1.777;  // PDG 2010
4189 +    double pionMass = 0.140; // PDG 2010  
4190 +    TLorentzVector fourVector1(0, 0, 0, 0);
4191 +    TLorentzVector fourVector2(0, 0, 0, 0);
4192 +    fourVector1.SetPtEtaPhiM(object1->pt, object1->eta, object1->phi, tauMass);
4193 +    fourVector2.SetPtEtaPhiM(object2->pt, object2->eta, object2->phi, pionMass );
4194 +    value = (fourVector1 + fourVector2).M();
4195 +  }
4196    else if(variable == "chargeProduct"){
4197      value = object1->charge*object2->charge;
4198    }
4199  
4200 <  else{clog << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
4200 >  else{clog << "WARNING: invalid tau-track pair variable '" << variable << "'\n"; value = -999;}
4201    value = applyFunction(function, value);
4202    return value;
4203   }
# Line 3911 | Line 4217 | OSUAnalysis::valueLookup (const BNtrack*
4217    else if (variable == "caloTotDeltaRp5_RhoCorr")    value = getTrkCaloTotRhoCorr(object1);
4218    else if (variable == "caloTotDeltaRp5ByP_RhoCorr") value = getTrkCaloTotRhoCorr(object1) / pMag;
4219  
4220 <  else { clog << "WARNING: invalid variable '" << variable << "'\n"; value = -999; }
4220 >  else { clog << "WARNING: invalid track-event pair variable '" << variable << "'\n"; value = -999; }
4221  
4222    value = applyFunction(function, value);
4223  
# Line 3933 | Line 4239 | OSUAnalysis::valueLookup (const BNelectr
4239        stringValue = "none";
4240    }
4241  
4242 <  else { clog << "WARNING: invalid variable '" << variable << "'\n"; value = -999; }
4242 >  else { clog << "WARNING: invalid electron-trigobj variable '" << variable << "'\n"; value = -999; }
4243  
4244    value = applyFunction(function, value);
4245  
# Line 3949 | Line 4255 | OSUAnalysis::valueLookup (const BNmuon*
4255  
4256    if (variable == "deltaR") value = deltaR(object1->eta,object1->phi,object2->eta,object2->phi);
4257  
4258 <  else { clog << "WARNING: invalid variable '" << variable << "'\n"; value = -999; }
4258 >  else { clog << "WARNING: invalid muon-trigobj variable '" << variable << "'\n"; value = -999; }
4259  
4260    value = applyFunction(function, value);
4261  
# Line 4069 | Line 4375 | OSUAnalysis::valueLookup (const BNstop*
4375  
4376  
4377  
4378 <  else { clog << "WARNING: invalid variable '" << variable << "'\n"; value = -999; }
4378 >  else { clog << "WARNING: invalid stop variable '" << variable << "'\n"; value = -999; }
4379  
4380    value = applyFunction(function, value);
4381  
# Line 4151 | Line 4457 | OSUAnalysis::getTrkCaloTotRhoCorr(const
4457  
4458   }
4459  
4460 + double
4461 + OSUAnalysis::getTrkDepTrkRp5RhoCorr(const BNtrack* track) {
4462 +  // Return the pile-up (rho) corrected isolation energy, i.e., the total calorimeter energy around the candidate track.              
4463 +  if (!useTrackCaloRhoCorr_) return -99;
4464 +  // if (!rhokt6CaloJetsHandle_) {                                                                                                    
4465 +  //   clog << "ERROR [getTrkCaloTotRhoCorr]:  The collection rhokt6CaloJetsHandle is not available!" << endl;                        
4466 +  //   return -99;                                                                                                                    
4467 +  // }                                                                                                                                
4468 +  double radDeltaRCone = 0.5;
4469 +  double rhoCorr_kt6CaloJets = *rhokt6CaloJetsHandle_ * TMath::Pi() * pow(radDeltaRCone, 2);  // Define effective area as pi*r^2, where r is radius of DeltaR cone.                                                                                                          
4470 +  double rawDepTrkRp5 = track->depTrkRp5;
4471 + double depTrkRp5RhoCorr = TMath::Max(0., rawDepTrkRp5 - rhoCorr_kt6CaloJets);
4472 + return depTrkRp5RhoCorr;
4473 +
4474 + }
4475 +
4476 + double
4477 + OSUAnalysis::getTrkDepTrkRp3RhoCorr(const BNtrack* track) {
4478 +  // Return the pile-up (rho) corrected isolation energy, i.e., the total calorimeter energy around the candidate track.                                                
4479 +  if (!useTrackCaloRhoCorr_) return -99;
4480 +  // if (!rhokt6CaloJetsHandle_) {                                                                                                                                      
4481 +  //   clog << "ERROR [getTrkCaloTotRhoCorr]:  The collection rhokt6CaloJetsHandle is not available!" << endl;                                                          
4482 +  //   return -99;                                                                                                                                                      
4483 +  // }                                                                                                                                                                  
4484 +  double radDeltaRCone = 0.3;
4485 + // Define effective area as pi*r^2, where r is radius of DeltaR cone
4486 +  double rhoCorr_kt6CaloJets = *rhokt6CaloJetsHandle_ * TMath::Pi() * pow(radDeltaRCone, 2);  
4487 +  double rawDepTrkRp3 = track->depTrkRp3;
4488 +  double depTrkRp3RhoCorr = TMath::Max(0., rawDepTrkRp3 - rhoCorr_kt6CaloJets);
4489 +  return depTrkRp3RhoCorr;
4490 +  
4491 + }
4492 +
4493  
4494  
4495  
# Line 4227 | Line 4566 | OSUAnalysis::applyFunction(string functi
4566   template <class InputCollection>
4567   void OSUAnalysis::setObjectFlags(cut &currentCut, uint currentCutIndex, flagMap &individualFlags, flagMap &cumulativeFlags, InputCollection inputCollection, string inputType){
4568  
4569 +  if (verbose_>2) clog << "  Beginning setObjectFlags for cut " << currentCutIndex << ": " << currentCut.name
4570 +                       << ", inputType=" << inputType
4571 +                       << endl;  
4572    if (currentCut.inputCollection.find("pair")!=string::npos)  {
4573      string obj1, obj2;
4574      getTwoObjs(currentCut.inputCollection, obj1, obj2);
4575 +    if (verbose_>2) clog << "  Two object types:  " << obj1 << ", " << obj2 << endl;
4576      if (inputType==obj1 ||
4577          inputType==obj2) {
4578        // Do not add a cut to individualFlags or cumulativeFlags, if the cut is on a paired collection,
# Line 4241 | Line 4584 | void OSUAnalysis::setObjectFlags(cut &cu
4584      }
4585    }
4586  
4587 +  if (!inputCollection) clog << "ERROR:  invalid input collection for inputType=" << inputType << endl;  
4588 +
4589 +  if (verbose_>3) clog << "   Collection size:  " << inputCollection->size() << endl;
4590 +
4591    for (uint object = 0; object != inputCollection->size(); object++){
4592  
4593 +    if (verbose_>4) clog << "    Setting flags for object " << object << endl;
4594 +
4595      bool cutDecision = true;//object passes if this cut doesn't cut on that type of object
4596      bool plotDecision = true;
4597  
# Line 4267 | Line 4616 | void OSUAnalysis::setObjectFlags(cut &cu
4616          }
4617          cutDecision = tempDecision;
4618        }
4619 <      //invert the cut for plotting if this cut is a veto
4620 <      if(currentCut.isVeto) plotDecision = !cutDecision;
4621 <      else plotDecision = cutDecision;
4619 >      //invert the cut if this cut is a veto
4620 >      if(currentCut.isVeto) cutDecision = !cutDecision;
4621 >      plotDecision = cutDecision;
4622      }
4623  
4624      individualFlags.at(inputType).at(currentCutIndex).push_back(make_pair(cutDecision,plotDecision));
# Line 4290 | Line 4639 | void OSUAnalysis::setObjectFlags(cut &cu
4639  
4640      cumulativeFlags.at(inputType).at(currentCutIndex).push_back(make_pair(previousCumulativeCutFlag,previousCumulativePlotFlag));
4641  
4642 <  }
4642 >  }  //   for (uint object = 0; object != inputCollection->size(); object++){
4643  
4644 < }
4644 > } // end void OSUAnalysis::setObjectFlags
4645  
4646  
4647   template <class InputCollection1, class InputCollection2>
4648 < void OSUAnalysis::setObjectFlags(cut &currentCut, uint currentCutIndex, flagMap &individualFlags, flagMap &cumulativeFlags, \
4649 <                                 InputCollection1 inputCollection1, InputCollection2 inputCollection2, flagPair flags1, flagPair flags2, string inputType){
4650 <
4648 > void OSUAnalysis::setObjectFlags(cut &currentCut, uint currentCutIndex, flagMap &individualFlags, flagMap &cumulativeFlags,
4649 >                                 InputCollection1 inputCollection1, InputCollection2 inputCollection2, string inputType){
4650 >  // This function sets the flags for the paired object collection.  
4651 >  // If the cut is applying on the given paired object collection, then the flags for the single object collections are also set.
4652 >  // If not, then the flags for the paired object collection are taken as the AND of the flags for each single object collection.  
4653 >
4654 >  if (verbose_>2) clog << "  Beginning setObjectFlags for cut=" << currentCut.name
4655 >                       << ", inputType=" << inputType
4656 >                       << endl;  
4657  
4658    bool sameObjects = false;
4659 <  if(typeid(InputCollection1).name() == typeid(InputCollection2).name()) sameObjects = true;
4659 >  if(typeid(InputCollection1).name() == typeid(InputCollection2).name()) sameObjects = true;  // FIXME:  is sameObjects just the not of isTwoTypesOfObject?  If so, it's redundant.  
4660  
4661    // Get the strings for the two objects that make up the pair.
4662    string obj1Type, obj2Type;
# Line 4332 | Line 4687 | void OSUAnalysis::setObjectFlags(cut &cu
4687        if(sameObjects && object1 >= object2) continue;//account for duplicate pairs if both collections are the same
4688  
4689  
4690 <      bool cutDecision = true;//object passes if this cut doesn't cut on that type of object
4690 >      bool cutDecision  = true;//object passes if this cut doesn't cut on that type of object
4691        bool plotDecision = true;
4692  
4693 +      // Determine whether each pair passes the cut, only if inputCollection is the same as the inputType.  
4694        if(currentCut.inputCollection == inputType){
4695  
4696          vector<bool> subcutDecisions;
4697          for( int subcutIndex = 0; subcutIndex != currentCut.numSubcuts; subcutIndex++){
4698            string stringValue = "";
4699            double value = valueLookup(&inputCollection1->at(object1), &inputCollection2->at(object2), currentCut.variables.at(subcutIndex), currentCut.functions.at(subcutIndex), stringValue);
4700 +          if (verbose_>1) clog << currentCut.variables.at(subcutIndex) << " = " << value
4701 +                               << endl;  
4702            if (stringValue == "") subcutDecisions.push_back(evaluateComparison(value,currentCut.comparativeOperators.at(subcutIndex),currentCut.cutValues.at(subcutIndex)));
4703            else subcutDecisions.push_back(evaluateComparison(stringValue,currentCut.comparativeOperators.at(subcutIndex),currentCut.cutStringValues.at(subcutIndex)));
4704          }
# Line 4356 | Line 4714 | void OSUAnalysis::setObjectFlags(cut &cu
4714            }
4715            cutDecision = tempDecision;
4716          }
4717 <        //invert the cut for plotting if this cut is a veto
4718 <        if(currentCut.isVeto) plotDecision = !cutDecision;
4719 <        else plotDecision = cutDecision;
4720 <      }
4721 <      individualFlags.at(inputType).at(currentCutIndex).push_back(make_pair(cutDecision,plotDecision));
4722 <      if (cutDecision && currentCut.inputCollection == inputType) {  // only set the flags for the individual objects if the pair object is being cut on
4723 <        individualFlags.at(obj1Type).at(currentCutIndex).at(object1).first = true;
4724 <        individualFlags.at(obj2Type).at(currentCutIndex).at(object2).first = true;
4725 <      }
4726 <      if (plotDecision && currentCut.inputCollection == inputType) {  // only set the flags for the individual objects if the pair object is being cut on
4727 <        individualFlags.at(obj1Type).at(currentCutIndex).at(object1).second = true;
4728 <        individualFlags.at(obj2Type).at(currentCutIndex).at(object2).second = true;
4729 <      }
4717 >        //invert the cut if this cut is a veto
4718 >        if (currentCut.isVeto) cutDecision = !cutDecision;
4719 >        plotDecision = cutDecision;
4720 >
4721 >        if (verbose_>1) clog << " cutDecision = " << cutDecision
4722 >                             << "; for currentCut.inputCollection = " << currentCut.inputCollection
4723 >                             << "; object1 (" << obj1Type << ") = " << object1
4724 >                             << "; object2 (" << obj2Type << ") = " << object2
4725 >                             << endl;  
4726 >        
4727 >        if (cutDecision) {  // only set the flags for the individual objects if the pair object is being cut on
4728 >          individualFlags.at(obj1Type).at(currentCutIndex).at(object1).first = true;
4729 >          individualFlags.at(obj2Type).at(currentCutIndex).at(object2).first = true;
4730 >        }
4731 >        if (plotDecision) {  // only set the flags for the individual objects if the pair object is being cut on
4732 >          individualFlags.at(obj1Type).at(currentCutIndex).at(object1).second = true;
4733 >          individualFlags.at(obj2Type).at(currentCutIndex).at(object2).second = true;
4734 >        }
4735 >        
4736 >
4737 >      } // if(currentCut.inputCollection == inputType){
4738 >
4739 >      // The individualFlags will be true if the inputCollection is not the same as the inputType.
4740 >      // They are also independent of the previous flags on the single objects.  
4741 >      individualFlags.at(inputType).at(currentCutIndex).push_back(make_pair(cutDecision,plotDecision));  
4742 >
4743 >
4744  
4745 <      //set flags for objects that pass this cut AND all the previous cuts
4745 >      // ************************************
4746 >      // Determine cumulative flags
4747 >      // ************************************
4748 >      // determine whether this paired object passes this cut AND all previous cuts
4749        bool previousCumulativeCutFlag = true;
4750        for(uint previousCutIndex = 0; previousCutIndex != currentCutIndex; previousCutIndex++){
4751 <        if(previousCumulativeCutFlag && individualFlags.at(inputType).at(previousCutIndex).at(counter).first) previousCumulativeCutFlag = true;
4752 <        else{ previousCumulativeCutFlag = false; break;}
4751 >        if(previousCumulativeCutFlag && individualFlags.at(inputType).at(previousCutIndex).at(counter).first) previousCumulativeCutFlag = true;
4752 >        else{ previousCumulativeCutFlag = false; break;}
4753        }
4754        previousCumulativeCutFlag = previousCumulativeCutFlag && cutDecision;
4755  
# Line 4385 | Line 4760 | void OSUAnalysis::setObjectFlags(cut &cu
4760        }
4761        previousCumulativePlotFlag = previousCumulativePlotFlag && plotDecision;
4762        
4763 <      //apply flags for the components of the composite object as well
4763 >      // Get the index for the flags of each of the single objects in the pair.  Usually this is the index of the previous cut, i.e., currentCutIndex-1.    
4764 >      int cutIdxFlagsObj1 = max(int(currentCutIndex-1),0);
4765 >      int cutIdxFlagsObj2 = max(int(currentCutIndex-1),0);
4766 >      // If the inputCollection of the cut is not equal to the inputType but the inputCollection includes objects that are contained in inputType, then use the currentCutIndex for those collections.
4767 >      // For example, if the inputType is jet-jet pairs, and the inputCollection is track-jet pairs, then use currentCutIndex for cutIdxFlagsObj{1,2}, i.e., for both jets.  
4768 >      // For example, if the inputType is jets, and the inputCollection is track-jet pairs, then use currentCutIndex for cutIdxFlagsObj2 (jets) and currentCutIndex-1 for cutIdxFlagsObj1 (tracks).  
4769 >      if (currentCut.inputCollection != inputType) {  
4770 >        if (currentCut.inputCollection.find(obj1Type)!=string::npos) cutIdxFlagsObj1 = currentCutIndex;
4771 >        if (currentCut.inputCollection.find(obj2Type)!=string::npos) cutIdxFlagsObj2 = currentCutIndex;
4772 >      }  
4773 >      flagPair flags1 = cumulativeFlags.at(obj1Type).at(cutIdxFlagsObj1);  // flag for input collection 1
4774 >      flagPair flags2 = cumulativeFlags.at(obj2Type).at(cutIdxFlagsObj2);  // flag for input collection 2
4775 >      
4776 >      // The cumulative flag is only true if the paired object cumulative flag is true, and if the single object cumulative flags are true.  
4777        bool currentCumulativeCutFlag = true;
4778        bool currentCumulativePlotFlag = true;
4391 –
4779        if(flags1.size() == 0 && flags2.size() == 0) currentCumulativeCutFlag = previousCumulativeCutFlag;
4780        else if(flags1.size() == 0) currentCumulativeCutFlag = previousCumulativeCutFlag && flags2.at(object2).first;
4781        else if(flags2.size() == 0) currentCumulativeCutFlag = previousCumulativeCutFlag && flags1.at(object1).first;
# Line 4399 | Line 4786 | void OSUAnalysis::setObjectFlags(cut &cu
4786        else if(flags2.size() == 0) currentCumulativePlotFlag = previousCumulativePlotFlag && flags1.at(object1).second;
4787        else currentCumulativePlotFlag = previousCumulativePlotFlag && flags1.at(object1).first && flags2.at(object2).second;
4788  
4789 <      cumulativeFlags.at(inputType).at(currentCutIndex).push_back(make_pair(currentCumulativeCutFlag,currentCumulativePlotFlag));
4789 >      cumulativeFlags.at(inputType).at(currentCutIndex).push_back(make_pair(currentCumulativeCutFlag,currentCumulativePlotFlag));  // Set the flag for the paired object
4790  
4404 –      if (currentCumulativeCutFlag && currentCut.inputCollection == inputType) {  // only set the flags for the individual objects if the pair object is being cut on
4405 –        cumulativeFlags.at(obj1Type).at(currentCutIndex).at(object1).first = true && getPreviousCumulativeFlags(currentCutIndex, individualFlags, obj1Type, object1, "cut");
4406 –        cumulativeFlags.at(obj2Type).at(currentCutIndex).at(object2).first = true && getPreviousCumulativeFlags(currentCutIndex, individualFlags, obj2Type, object2, "cut");
4407 –      }
4791  
4792 <      if (currentCumulativePlotFlag && currentCut.inputCollection == inputType) {  // only set the flags for the individual objects if the pair object is being cut on
4792 >      if (currentCumulativeCutFlag && currentCut.inputCollection == inputType) {  // Set the flags for the individual objects if the paired object is being cut on.  
4793 >        cumulativeFlags.at(obj1Type).at(currentCutIndex).at(object1).first  = true && getPreviousCumulativeFlags(currentCutIndex, individualFlags, obj1Type, object1, "cut");
4794 >        cumulativeFlags.at(obj2Type).at(currentCutIndex).at(object2).first  = true && getPreviousCumulativeFlags(currentCutIndex, individualFlags, obj2Type, object2, "cut");
4795          cumulativeFlags.at(obj1Type).at(currentCutIndex).at(object1).second = true && getPreviousCumulativeFlags(currentCutIndex, individualFlags, obj1Type, object1, "plot");
4796          cumulativeFlags.at(obj2Type).at(currentCutIndex).at(object2).second = true && getPreviousCumulativeFlags(currentCutIndex, individualFlags, obj2Type, object2, "plot");
4797 +
4798 +        if (verbose_>1) clog << " previousCumulativeCutFlag for object1 = " << getPreviousCumulativeFlags(currentCutIndex, individualFlags, obj2Type, object1, "cut") << endl;  
4799 +        if (verbose_>1) clog << " previousCumulativeCutFlag for object2 = " << getPreviousCumulativeFlags(currentCutIndex, individualFlags, obj2Type, object2, "cut") << endl;  
4800 +
4801        }
4802  
4803        counter++;
# Line 4416 | Line 4805 | void OSUAnalysis::setObjectFlags(cut &cu
4805      } // end   for (uint object2 = 0; object2 != inputCollection2->size(); object2++)
4806    }  // end   for (uint object1 = 0; object1 != inputCollection1->size(); object1++)
4807  
4808 < }
4808 > } // end void OSUAnalysis::setObjectFlags
4809  
4810  
4811   bool OSUAnalysis::getPreviousCumulativeFlags(uint currentCutIndex, flagMap &individualFlags, string obj1Type, uint object1, string flagType) {
# Line 4461 | Line 4850 | void OSUAnalysis::assignTreeBranch(Branc
4850   template <class InputCollection>
4851   void OSUAnalysis::fill1DHistogram(TH1* histo, histogram parameters, InputCollection inputCollection, flagPair flags, double scaleFactor){
4852  
4853 +  if (verbose_>2) clog << "  Filling histogram for " << parameters.name << endl;  
4854  
4855    for (uint object = 0; object != inputCollection->size(); object++){
4856  
# Line 4484 | Line 4874 | void OSUAnalysis::fill1DHistogram(TH1* h
4874  
4875      if (printEventInfo_) {
4876        // Write information about event to screen, for testing purposes.
4877 <      clog << "  Info for event:  value for histogram " << histo->GetName() << ":  " << value << endl;
4877 >      clog << "  Info for event:  value for histogram " << histo->GetName() << ":  " << value << " (object number " << object << ")" << endl;
4878      }
4879  
4880    }
4881   }
4882  
4883   template <class InputCollection1, class InputCollection2>
4884 < void OSUAnalysis::fill1DHistogram(TH1* histo, histogram parameters, InputCollection1 inputCollection1, InputCollection2 inputCollection2, flagPair flags1, flagPair flags2, flagPair pairFlags, double scaleFactor){
4884 > void OSUAnalysis::fill1DHistogram(TH1* histo, histogram parameters, InputCollection1 inputCollection1, InputCollection2 inputCollection2,
4885 >                                  flagPair pairFlags, double scaleFactor){
4886  
4887    bool sameObjects = false;
4888    if(typeid(InputCollection1).name() == typeid(InputCollection2).name()) sameObjects = true;
# Line 4503 | Line 4894 | void OSUAnalysis::fill1DHistogram(TH1* h
4894        if(sameObjects && object1 >= object2) continue;//account for duplicate pairs if both collections are the same
4895  
4896        pairCounter++;
4506 –      //only take objects which have passed all cuts and pairs which have passed all cuts
4507 –      if(!plotAllObjectsInPassingEvents_ && !flags1.at(object1).second) continue;
4508 –      if(!plotAllObjectsInPassingEvents_ && !flags2.at(object2).second) continue;
4897        if(!plotAllObjectsInPassingEvents_ && !pairFlags.at(pairCounter).second) continue;
4898  
4899        string currentString = parameters.inputVariables.at(0);
# Line 4524 | Line 4912 | void OSUAnalysis::fill1DHistogram(TH1* h
4912        double value = valueLookup(&inputCollection1->at(object1), &inputCollection2->at(object2), inputVariable, function, stringValue);
4913        histo->Fill(value,scaleFactor);
4914  
4915 +      if (printEventInfo_) {
4916 +        // Write information about event to screen, for testing purposes.
4917 +        clog << "  Info for event:  value for histogram " << histo->GetName() << ":  " << value
4918 +             << " (object1 number " << object1 << "), "
4919 +             << " (object2 number " << object2 << ")"
4920 +             << endl;
4921 +      }
4922 +      
4923      }
4924    }
4925  
# Line 4572 | Line 4968 | void OSUAnalysis::fill2DHistogram(TH2* h
4968   }
4969  
4970   template <class InputCollection1, class InputCollection2>
4971 < void OSUAnalysis::fill2DHistogram(TH2* histo, histogram parameters, InputCollection1 inputCollection1, InputCollection2 inputCollection2, flagPair flags1, flagPair flags2, flagPair pairFlags, double scaleFactor){
4971 > void OSUAnalysis::fill2DHistogram(TH2* histo, histogram parameters, InputCollection1 inputCollection1, InputCollection2 inputCollection2,
4972 >                                  flagPair pairFlags, double scaleFactor){
4973  
4974    bool sameObjects = false;
4975    if(typeid(InputCollection1).name() == typeid(InputCollection2).name()) sameObjects = true;
# Line 4585 | Line 4982 | void OSUAnalysis::fill2DHistogram(TH2* h
4982  
4983        pairCounter++;
4984  
4588 –      //only take objects which have passed all cuts and pairs which have passed all cuts
4589 –      if(!plotAllObjectsInPassingEvents_ && !flags1.at(object1).second) continue;
4590 –      if(!plotAllObjectsInPassingEvents_ && !flags2.at(object2).second) continue;
4985        if(!plotAllObjectsInPassingEvents_ && !pairFlags.at(pairCounter).second) continue;
4986  
4987        string stringValue = "";

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