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Comparing UserCode/OSUT3Analysis/AnaTools/plugins/OSUAnalysis.cc (file contents):
Revision 1.49 by wulsin, Wed Apr 17 15:39:43 2013 UTC vs.
Revision 1.122 by jbrinson, Fri Aug 9 11:12:33 2013 UTC

# Line 1 | Line 1
1   #include "OSUT3Analysis/AnaTools/plugins/OSUAnalysis.h"
2
2   OSUAnalysis::OSUAnalysis (const edm::ParameterSet &cfg) :
3    // Retrieve parameters from the configuration file.
4    jets_ (cfg.getParameter<edm::InputTag> ("jets")),
5    muons_ (cfg.getParameter<edm::InputTag> ("muons")),
6 +  secMuons_ (cfg.getParameter<edm::InputTag> ("secMuons")),
7    electrons_ (cfg.getParameter<edm::InputTag> ("electrons")),
8    events_ (cfg.getParameter<edm::InputTag> ("events")),
9    taus_ (cfg.getParameter<edm::InputTag> ("taus")),
# Line 17 | Line 17 | OSUAnalysis::OSUAnalysis (const edm::Par
17    photons_ (cfg.getParameter<edm::InputTag> ("photons")),
18    superclusters_ (cfg.getParameter<edm::InputTag> ("superclusters")),
19    triggers_ (cfg.getParameter<edm::InputTag> ("triggers")),
20 <  puFile_ (cfg.getParameter<std::string> ("puFile")),
21 <  deadEcalFile_ (cfg.getParameter<std::string> ("deadEcalFile")),
22 <  muonSFFile_ (cfg.getParameter<std::string> ("muonSFFile")),
23 <  dataPU_ (cfg.getParameter<std::string> ("dataPU")),
24 <  electronSFID_ (cfg.getParameter<std::string> ("electronSFID")),
25 <  muonSF_ (cfg.getParameter<std::string> ("muonSF")),
26 <  dataset_ (cfg.getParameter<std::string> ("dataset")),
27 <  datasetType_ (cfg.getParameter<std::string> ("datasetType")),
20 >  trigobjs_ (cfg.getParameter<edm::InputTag> ("trigobjs")),
21 >  puFile_ (cfg.getParameter<string> ("puFile")),
22 >  deadEcalFile_ (cfg.getParameter<string> ("deadEcalFile")),
23 >  muonSFFile_ (cfg.getParameter<string> ("muonSFFile")),
24 >  dataPU_ (cfg.getParameter<string> ("dataPU")),
25 >  electronSFID_ (cfg.getParameter<string> ("electronSFID")),
26 >  muonSF_ (cfg.getParameter<string> ("muonSF")),
27 >  dataset_ (cfg.getParameter<string> ("dataset")),
28 >  datasetType_ (cfg.getParameter<string> ("datasetType")),
29    channels_  (cfg.getParameter<vector<edm::ParameterSet> >("channels")),
30    histogramSets_ (cfg.getParameter<vector<edm::ParameterSet> >("histogramSets")),
31 +  useEDMFormat_   (cfg.getParameter<bool>("useEDMFormat")),
32 +  treeBranchSets_   (cfg.getParameter<vector<edm::ParameterSet> >("treeBranchSets")),
33    plotAllObjectsInPassingEvents_ (cfg.getParameter<bool> ("plotAllObjectsInPassingEvents")),
34    doPileupReweighting_ (cfg.getParameter<bool> ("doPileupReweighting")),
35 <  printEventInfo_ (cfg.getParameter<bool> ("printEventInfo")),
35 >  applyLeptonSF_ (cfg.getParameter<bool> ("applyLeptonSF")),
36 >  applyBtagSF_ (cfg.getParameter<bool> ("applyBtagSF")),
37 >  minBtag_ (cfg.getParameter<int> ("minBtag")),
38 >  printEventInfo_      (cfg.getParameter<bool> ("printEventInfo")),
39 >  printAllTriggers_    (cfg.getParameter<bool> ("printAllTriggers")),
40    useTrackCaloRhoCorr_ (cfg.getParameter<bool> ("useTrackCaloRhoCorr")),
41 <  stopCTau_ (cfg.getParameter<vector<double> > ("stopCTau"))
41 >  stopCTau_ (cfg.getParameter<vector<double> > ("stopCTau")),
42 >  GetPlotsAfterEachCut_ (cfg.getParameter<bool> ("GetPlotsAfterEachCut")),
43 >  verbose_ (cfg.getParameter<int> ("verbose"))
44 > {
45  
46 < {
46 >  if (verbose_) printEventInfo_ = true;  
47 >  if (verbose_) clog << "Beginning OSUAnalysis::OSUAnalysis constructor." << endl;  
48  
49 <  TH1::SetDefaultSumw2 ();
49 >  TH1::SetDefaultSumw2();
50  
51    //create pile-up reweighting object, if necessary
52    if(datasetType_ != "data") {
53      if(doPileupReweighting_) puWeight_ = new PUWeight (puFile_, dataPU_, dataset_);
54 <    //    muonSFWeight_ = new MuonSFWeight (muonSFFile_, muonSF_);
55 <    //    electronSFWeight_ = new ElectronSFWeight ("53X", electronSFID_);
54 >    if (applyLeptonSF_){
55 >      muonSFWeight_ = new MuonSFWeight (muonSFFile_, muonSF_);
56 >      electronSFWeight_ = new ElectronSFWeight ("53X", electronSFID_);
57 >    }
58 >    if (applyBtagSF_){
59 >      bTagSFWeight_ = new BtagSFWeight;
60 >    }
61    }
62 < #ifdef DISPLACED_SUSY
63 <  if (datasetType_ == "signalMC")
48 <    cTauWeight_ = new CTauWeight (stopCTau_.at (0), stopCTau_.at (1), stops_);
49 < #endif
62 >  if (datasetType_ == "signalMC" && regex_match (dataset_, regex ("stop.*to.*_.*mm.*")))
63 >    stopCTauWeight_ = new StopCTauWeight (stopCTau_.at(0), stopCTau_.at(1), stops_);
64  
65  
66    // Construct Cutflow Objects. These store the results of cut decisions and
67    // handle filling cut flow histograms.
68    masterCutFlow_ = new CutFlow (fs_);
55  std::vector<TFileDirectory> directories;
69  
70    //always get vertex collection so we can assign the primary vertex in the event
71    objectsToGet.push_back("primaryvertexs");
59
60  //always make the plot of number of primary vertices (to check pile-up reweighting)
72    objectsToPlot.push_back("primaryvertexs");
73 +  objectsToFlag.push_back("primaryvertexs");
74 +
75  
76    //always get the MC particles to do GEN-matching
77    objectsToGet.push_back("mcparticles");
# Line 66 | Line 79 | OSUAnalysis::OSUAnalysis (const edm::Par
79    //always get the event collection to do pile-up reweighting
80    objectsToGet.push_back("events");
81  
82 +
83 +  // Parse the tree variable definitions.
84 +  for (uint iBranchSet = 0; !useEDMFormat_ && iBranchSet<treeBranchSets_.size(); iBranchSet++) {
85 +    string tempInputCollection = treeBranchSets_.at(iBranchSet).getParameter<string> ("inputCollection");
86 +    if(tempInputCollection.find("pairs")!=string::npos) { clog << "Warning:  tree filling is not configured for pairs of objects, so will not work for collection: " << tempInputCollection << endl; }
87 +    objectsToGet.push_back(tempInputCollection);
88 +    objectsToFlag.push_back(tempInputCollection);
89 +
90 +    vector<string> branchList(treeBranchSets_.at(iBranchSet).getParameter<vector<string> >("branches"));
91 +
92 +    for (uint iBranch = 0; iBranch<branchList.size(); iBranch++) {
93 +      BranchSpecs br;
94 +      br.inputCollection = tempInputCollection;
95 +      br.inputVariable = branchList.at(iBranch);
96 +      TString newName = TString(br.inputCollection) + "_" + TString(br.inputVariable);
97 +      br.name = string(newName.Data());
98 +      treeBranches_.push_back(br);
99 +      if (verbose_>3) clog << "   Adding branch to BNTree: " << br.name << endl;  
100 +    }
101 +
102 +  } // end   for (uint iBranchSet = 0; iBranchSet<treeBranchSets_.size(); iBranchSet++)
103 +
104 +
105    //parse the histogram definitions
106    for(uint currentHistogramSet = 0; currentHistogramSet != histogramSets_.size(); currentHistogramSet++){
107  
108      string tempInputCollection = histogramSets_.at(currentHistogramSet).getParameter<string> ("inputCollection");
109      if(tempInputCollection == "muon-electron pairs") tempInputCollection = "electron-muon pairs";
110 +    if(tempInputCollection == "photon-muon pairs") tempInputCollection = "muon-photon pairs";
111 +    if(tempInputCollection == "photon-electron pairs") tempInputCollection = "electron-photon pairs";
112 +    if(tempInputCollection == "jet-electron pairs") tempInputCollection = "electron-jet pairs";
113 +    if(tempInputCollection == "jet-photon pairs") tempInputCollection = "photon-jet pairs";
114 +    if(tempInputCollection == "jet-muon pairs") tempInputCollection = "muon-jet pairs";
115 +    if(tempInputCollection == "event-muon pairs") tempInputCollection = "muon-event pairs";
116 +    if(tempInputCollection == "jet-met pairs")  tempInputCollection = "met-jet pairs";
117 +    if(tempInputCollection == "track-jet pairs")  tempInputCollection = "track-jet pairs";
118      if(tempInputCollection == "event-track pairs")   tempInputCollection = "track-event pairs";
119      if(tempInputCollection == "secondary muon-muon pairs")   tempInputCollection = "muon-secondary muon pairs";
120 <    if(tempInputCollection.find("pairs")==std::string::npos){ //just a single object
121 <      if(tempInputCollection.find("secondary")!=std::string::npos){//secondary object
122 <        int spaceIndex = tempInputCollection.find(" ");
123 <        int secondWordLength = tempInputCollection.size() - spaceIndex;
124 <        objectsToGet.push_back(tempInputCollection.substr(spaceIndex+1,secondWordLength));
125 <      }
126 <      else{
127 <        objectsToGet.push_back(tempInputCollection);
120 >    if(tempInputCollection == "secondary jet-muon pairs")   tempInputCollection = "muon-secondary jet pairs";
121 >    if(tempInputCollection == "secondary photon-muon pairs")   tempInputCollection = "muon-secondary photon pairs";
122 >    if(tempInputCollection == "secondary jet-electron pairs")   tempInputCollection = "electron-secondary jet pairs";
123 >    if(tempInputCollection == "secondary jet-photon pairs")   tempInputCollection = "photon-secondary jet pairs";
124 >    if(tempInputCollection == "secondary jet-jet pairs")   tempInputCollection = "jet-secondary jet pairs";
125 >    if(tempInputCollection == "secondary electron-electron pairs")   tempInputCollection = "electron-secondary electron pairs";
126 >    if(tempInputCollection == "trigobj-electron pairs")   tempInputCollection = "electron-trigobj pairs";
127 >    if(tempInputCollection == "trigobj-muon pairs")   tempInputCollection = "muon-trigobj pairs";
128 >    if(tempInputCollection.find("pairs")==string::npos){ //just a single object
129 >      if(tempInputCollection.find("secondary")!=string::npos){//secondary object
130 >        if(tempInputCollection.find("secondary muons")!=string::npos){//treat secondary muons differently; allow for a different input collection
131 >          objectsToGet.push_back("secondary muons");  
132 >        } else {
133 >          int spaceIndex = tempInputCollection.find(" ");
134 >          int secondWordLength = tempInputCollection.size() - spaceIndex;
135 >          objectsToGet.push_back(tempInputCollection.substr(spaceIndex+1,secondWordLength));
136 >        }
137 >      } else{
138 >        objectsToGet.push_back(tempInputCollection);
139        }
140        objectsToPlot.push_back(tempInputCollection);
141 <      objectsToCut.push_back(tempInputCollection);
142 <    }
143 <    else{//pair of objects, need to add the pair and the individual objects to the lists of things to Get/Plot/Cut
89 <      string obj1;
141 >      objectsToFlag.push_back(tempInputCollection);
142 >    } else { //pair of objects, need to add the pair and the individual objects to the lists of things to Get/Plot/Cut
143 >      string obj1;
144        string obj2;
145        getTwoObjs(tempInputCollection, obj1, obj2);
146 <      string obj2ToGet = getObjToGet(obj2);  
147 <      objectsToCut.push_back(tempInputCollection);
148 <      objectsToCut.push_back(obj1);
149 <      objectsToCut.push_back(obj2);  
146 >      string obj2ToGet = getObjToGet(obj2);
147 >      objectsToFlag.push_back(tempInputCollection);
148 >      objectsToFlag.push_back(obj1);
149 >      objectsToFlag.push_back(obj2);
150        objectsToPlot.push_back(tempInputCollection);
151        objectsToPlot.push_back(obj1);
152 <      objectsToPlot.push_back(obj2);  
152 >      objectsToPlot.push_back(obj2);
153        objectsToGet.push_back(tempInputCollection);
154        objectsToGet.push_back(obj1);
155        objectsToGet.push_back(obj2ToGet);
156 <
157 <    }
158 <
156 >    } // end else
157 >    if (find(objectsToPlot.begin(), objectsToPlot.end(), "events") != objectsToPlot.end())
158 >      objectsToGet.push_back("jets");
159 >    
160 >    
161      vector<edm::ParameterSet> histogramList_  (histogramSets_.at(currentHistogramSet).getParameter<vector<edm::ParameterSet> >("histograms"));
162  
163      for(uint currentHistogram = 0; currentHistogram != histogramList_.size(); currentHistogram++){
164  
165 +      vector<double> defaultValue;
166 +      defaultValue.push_back (-1.0);
167 +
168        histogram tempHistogram;
169        tempHistogram.inputCollection = tempInputCollection;
170        tempHistogram.name = histogramList_.at(currentHistogram).getParameter<string>("name");
171        tempHistogram.title = histogramList_.at(currentHistogram).getParameter<string>("title");
172 <      tempHistogram.bins = histogramList_.at(currentHistogram).getParameter<vector<double> >("bins");
172 >      tempHistogram.bins = histogramList_.at(currentHistogram).getUntrackedParameter<vector<double> >("bins", defaultValue);
173 >      tempHistogram.variableBinsX = histogramList_.at(currentHistogram).getUntrackedParameter<vector<double> >("variableBinsX", defaultValue);
174 >      tempHistogram.variableBinsY = histogramList_.at(currentHistogram).getUntrackedParameter<vector<double> >("variableBinsY", defaultValue);
175        tempHistogram.inputVariables = histogramList_.at(currentHistogram).getParameter<vector<string> >("inputVariables");
176  
177 <      histograms.push_back(tempHistogram);
177 >      bool histExists = false;
178 >      for (uint i=0; i<histograms.size(); i++) {
179 >        if (histograms.at(i).name == tempHistogram.name) { histExists = true; break; }
180 >      }  
181 >      if (histExists) {
182 >        clog << "Warning:  histogram " << tempHistogram.name << " already exists; will not book an additional instance." << endl;  
183 >      } else {
184 >        histograms.push_back(tempHistogram);
185 >      }
186  
187      }
188 <  }
188 >  } //   for(uint currentHistogramSet = 0; currentHistogramSet != histogramSets_.size(); currentHistogramSet++)
189 >
190    //make unique vector of objects we need to plot (so we can book a histogram with the number of each object)
191    sort( objectsToPlot.begin(), objectsToPlot.end() );
192    objectsToPlot.erase( unique( objectsToPlot.begin(), objectsToPlot.end() ), objectsToPlot.end() );
# Line 127 | Line 197 | OSUAnalysis::OSUAnalysis (const edm::Par
197    for(uint currentObjectIndex = 0; currentObjectIndex != objectsToPlot.size(); currentObjectIndex++){
198  
199      string currentObject = objectsToPlot.at(currentObjectIndex);
200 <    if(currentObject != "muons" && currentObject != "secondary muons" && currentObject != "electrons" && currentObject != "taus" && currentObject != "tracks" && currentObject != "photons" && currentObject != "superclusters") continue;
200 >    if(currentObject != "muons" &&
201 >       currentObject != "secondary muons" &&
202 >       currentObject != "secondary electrons" &&
203 >       currentObject != "electrons" &&
204 >       currentObject != "taus" &&
205 >       currentObject != "tracks" &&
206 >       currentObject != "photons" &&
207 >       currentObject != "secondary photons"&&
208 >       currentObject != "superclusters")
209 >      continue;
210  
211      histogram tempIdHisto;
212      histogram tempMomIdHisto;
213      histogram tempGmaIdHisto;
214      histogram tempIdVsMomIdHisto;
215 +    histogram tempIdVsGmaIdHisto;
216  
217      tempIdHisto.inputCollection = currentObject;
218      tempMomIdHisto.inputCollection = currentObject;
219      tempGmaIdHisto.inputCollection = currentObject;
220      tempIdVsMomIdHisto.inputCollection = currentObject;
221 +    tempIdVsGmaIdHisto.inputCollection = currentObject;
222  
223      if(currentObject == "secondary muons") currentObject = "secondaryMuons";
224 +    if(currentObject == "secondary photons") currentObject = "secondaryPhotons";
225 +    if(currentObject == "secondary electrons") currentObject = "secondaryElectrons";
226  
227      currentObject = currentObject.substr(0, currentObject.size()-1);
228      tempIdHisto.name = currentObject+"GenMatchId";
229      tempMomIdHisto.name = currentObject+"GenMatchMotherId";
230      tempGmaIdHisto.name = currentObject+"GenMatchGrandmotherId";
231      tempIdVsMomIdHisto.name = currentObject+"GenMatchIdVsMotherId";
232 +    tempIdVsGmaIdHisto.name = currentObject+"GenMatchIdVsGrandmotherId";
233  
234      currentObject.at(0) = toupper(currentObject.at(0));
235      tempIdHisto.title = currentObject+" Gen-matched Particle";
236      tempMomIdHisto.title = currentObject+" Gen-matched Particle's Mother";
237      tempGmaIdHisto.title = currentObject+" Gen-matched Particle's Grandmother";
238      tempIdVsMomIdHisto.title = currentObject+" Gen-matched Particle's Mother vs. Particle;Particle;Mother";
239 +    tempIdVsGmaIdHisto.title = currentObject+" Gen-matched Particle's Grandmother vs. Particle;Particle;Grandmother";
240  
241 <    int maxNum = 24;
241 >
242 >    int maxNum = 25;
243      vector<double> binVector;
244      binVector.push_back(maxNum);
245      binVector.push_back(0);
# Line 171 | Line 257 | OSUAnalysis::OSUAnalysis (const edm::Par
257      tempIdVsMomIdHisto.bins = binVector;
258      tempIdVsMomIdHisto.inputVariables.push_back("genMatchedId");
259      tempIdVsMomIdHisto.inputVariables.push_back("genMatchedMotherIdReverse");
260 +    tempIdVsGmaIdHisto.bins = binVector;
261 +    tempIdVsGmaIdHisto.inputVariables.push_back("genMatchedId");
262 +    tempIdVsGmaIdHisto.inputVariables.push_back("genMatchedGrandmotherIdReverse");
263  
264      histograms.push_back(tempIdHisto);
265      histograms.push_back(tempMomIdHisto);
266      histograms.push_back(tempGmaIdHisto);
267      histograms.push_back(tempIdVsMomIdHisto);
268 +    histograms.push_back(tempIdVsGmaIdHisto);
269    }
270  
271  
# Line 187 | Line 277 | OSUAnalysis::OSUAnalysis (const edm::Par
277      string channelName  (channels_.at(currentChannel).getParameter<string>("name"));
278      tempChannel.name = channelName;
279      TString channelLabel = channelName;
280 +    if (verbose_) clog << "Processing channel:  " << channelName << endl;  
281  
282      //set triggers for this channel
283      vector<string> triggerNames;
284      triggerNames.clear();
285 +    vector<string> triggerToVetoNames;
286 +    triggerToVetoNames.clear();
287 +
288      tempChannel.triggers.clear();
289 +    tempChannel.triggersToVeto.clear();
290      if(channels_.at(currentChannel).exists("triggers")){
291        triggerNames   = channels_.at(currentChannel).getParameter<vector<string> >("triggers");
292        for(uint trigger = 0; trigger!= triggerNames.size(); trigger++)
293          tempChannel.triggers.push_back(triggerNames.at(trigger));
294        objectsToGet.push_back("triggers");
295      }
296 <
296 >    if(channels_.at(currentChannel).exists("triggersToVeto")){
297 >      triggerToVetoNames = channels_.at(currentChannel).getParameter<vector<string> >("triggersToVeto");
298 >      for(uint trigger = 0; trigger!= triggerToVetoNames.size(); trigger++)
299 >        tempChannel.triggersToVeto.push_back(triggerToVetoNames.at(trigger));
300 >      objectsToGet.push_back("triggers");
301 >    }
302  
303  
304  
305      //create cutFlow for this channel
306      cutFlows_.push_back (new CutFlow (fs_, channelName));
307 <
308 <    //book a directory in the output file with the name of the channel
309 <    TFileDirectory subDir = fs_->mkdir( channelName );
210 <    directories.push_back(subDir);
211 <
212 <    std::map<std::string, TH1D*> oneDhistoMap;
213 <    oneDHists_.push_back(oneDhistoMap);
214 <    std::map<std::string, TH2D*> twoDhistoMap;
215 <    twoDHists_.push_back(twoDhistoMap);
216 <
217 <
218 <
219 <    //book all histograms included in the configuration
220 <    for(uint currentHistogramIndex = 0; currentHistogramIndex != histograms.size(); currentHistogramIndex++){
221 <      histogram currentHistogram = histograms.at(currentHistogramIndex);
222 <      int numBinsElements = currentHistogram.bins.size();
223 <      int numInputVariables = currentHistogram.inputVariables.size();
224 <
225 <      if(numBinsElements != 3 && numBinsElements !=6) {
226 <        std::cout << "Error: Didn't find correct number of bin specifications for histogram named '" << currentHistogram.name << "'\n";
227 <        exit(0);
228 <      }
229 <      else if((numBinsElements == 3 && numInputVariables !=1) || (numBinsElements == 6 && numInputVariables!=2)){
230 <        std::cout << "Error: Didn't find correct number of input variables for histogram named '" << currentHistogram.name << "'\n";
231 <        exit(0);
232 <      }
233 <      else if(numBinsElements == 3){
234 <        oneDHists_.at(currentChannel)[currentHistogram.name] = directories.at(currentChannel).make<TH1D> (TString(currentHistogram.name),channelLabel+" channel: "+currentHistogram.title, currentHistogram.bins.at(0), currentHistogram.bins.at(1), currentHistogram.bins.at(2));
235 <      }
236 <      else if(numBinsElements == 6){
237 <        twoDHists_.at(currentChannel)[currentHistogram.name] = directories.at(currentChannel).make<TH2D> (TString(currentHistogram.name),channelLabel+" channel: "+currentHistogram.title, currentHistogram.bins.at(0), currentHistogram.bins.at(1), currentHistogram.bins.at(2),currentHistogram.bins.at(3),currentHistogram.bins.at(4),currentHistogram.bins.at(5));
238 <
239 <      }
240 <
241 <
242 <      if(currentHistogram.name.find("GenMatch")==std::string::npos) continue;
243 <
244 <      // bin      particle type
245 <      // ---      -------------
246 <      //  0        unmatched
247 <      //  1        u
248 <      //  2        d
249 <      //  3        s
250 <      //  4        c
251 <      //  5        b
252 <      //  6        t
253 <      //  7        e
254 <      //  8        mu
255 <      //  9        tau
256 <      // 10        nu
257 <      // 11        g
258 <      // 12        gamma
259 <      // 13        Z
260 <      // 14        W
261 <      // 15        light meson
262 <      // 16        K meson
263 <      // 17        D meson
264 <      // 18        B meson
265 <      // 19        light baryon
266 <      // 20        strange baryon
267 <      // 21        charm baryon
268 <      // 22        bottom baryon
269 <      // 23        other
270 <
271 <      vector<TString> labelArray;
272 <      labelArray.push_back("unmatched");
273 <      labelArray.push_back("u");
274 <      labelArray.push_back("d");
275 <      labelArray.push_back("s");
276 <      labelArray.push_back("c");
277 <      labelArray.push_back("b");
278 <      labelArray.push_back("t");
279 <      labelArray.push_back("e");
280 <      labelArray.push_back("#mu");
281 <      labelArray.push_back("#tau");
282 <      labelArray.push_back("#nu");
283 <      labelArray.push_back("g");
284 <      labelArray.push_back("#gamma");
285 <      labelArray.push_back("Z");
286 <      labelArray.push_back("W");
287 <      labelArray.push_back("light meson");
288 <      labelArray.push_back("K meson");
289 <      labelArray.push_back("D meson");
290 <      labelArray.push_back("B meson");
291 <      labelArray.push_back("light baryon");
292 <      labelArray.push_back("strange baryon");
293 <      labelArray.push_back("charm baryon");
294 <      labelArray.push_back("bottom baryon");
295 <      labelArray.push_back("other");
296 <
297 <      for(int bin = 0; bin !=currentHistogram.bins.at(0); bin++){
298 <        if(currentHistogram.name.find("GenMatchIdVsMotherId")==std::string::npos) {
299 <          oneDHists_.at(currentChannel)[currentHistogram.name]->GetXaxis()->SetBinLabel(bin+1,labelArray.at(bin));
300 <        }
301 <        else {
302 <          twoDHists_.at(currentChannel)[currentHistogram.name]->GetYaxis()->SetBinLabel(bin+1,labelArray.at(currentHistogram.bins.at(0)-bin-1));
303 <          twoDHists_.at(currentChannel)[currentHistogram.name]->GetXaxis()->SetBinLabel(bin+1,labelArray.at(bin));
304 <        }
305 <      }
306 <      if(currentHistogram.name.find("GenMatchIdVsMotherId")!=std::string::npos) {
307 <        twoDHists_.at(currentChannel)[currentHistogram.name]->GetXaxis()->CenterTitle();
308 <        twoDHists_.at(currentChannel)[currentHistogram.name]->GetYaxis()->CenterTitle();
309 <      }
310 <
311 <    }
312 <
313 <    // Book a histogram for the number of each object type to be plotted.  
314 <    // Name of objectToPlot here must match the name specified in OSUAnalysis::analyze().  
315 <    for (uint currentObjectIndex = 0; currentObjectIndex != objectsToPlot.size(); currentObjectIndex++){
316 <      string currentObject = objectsToPlot.at(currentObjectIndex);
317 <      int maxNum = 10;
318 <      if(currentObject == "mcparticles") maxNum = 50;
319 <      else if(currentObject == "primaryvertexs") maxNum = 50;
320 <
321 <      if(currentObject == "muon-muon pairs")                currentObject = "dimuonPairs";
322 <      else if(currentObject == "electron-electron pairs")   currentObject = "dielectronPairs";
323 <      else if(currentObject == "electron-muon pairs")       currentObject = "electronMuonPairs";
324 <      else if(currentObject == "track-event pairs")         currentObject = "trackEventPairs";
325 <      else if(currentObject == "electron-track pairs")      currentObject = "electronTrackPairs";        
326 <      else if(currentObject == "muon-track pairs")          currentObject = "muonTrackPairs";    
327 <      else if(currentObject == "muon-tau pairs")            currentObject = "muonTauPairs";      
328 <      else if(currentObject == "tau-tau pairs")             currentObject = "ditauPairs";
329 <      else if(currentObject == "tau-track pairs")           currentObject = "tauTrackPairs";
330 <      else if(currentObject == "muon-secondary muon pairs") currentObject = "muonSecondaryMuonPairs";
331 <      else if(currentObject == "secondary muons")           currentObject = "secondaryMuons";
332 <
333 <      currentObject.at(0) = toupper(currentObject.at(0));  
334 <      string histoName = "num" + currentObject;
335 <
336 <      if(histoName == "numPrimaryvertexs"){
337 <        string newHistoName = histoName + "BeforePileupCorrection";
338 <        oneDHists_.at(currentChannel)[newHistoName] = directories.at(currentChannel).make<TH1D> (TString(newHistoName),channelLabel+" channel: Number of Selected "+currentObject+" Before Pileup Correction; # "+currentObject, maxNum, 0, maxNum);
339 <        newHistoName = histoName + "AfterPileupCorrection";
340 <        oneDHists_.at(currentChannel)[newHistoName] = directories.at(currentChannel).make<TH1D> (TString(newHistoName),channelLabel+" channel: Number of Selected "+currentObject+ " After Pileup Correction; # "+currentObject, maxNum, 0, maxNum);
341 <      }
342 <      else
343 <        oneDHists_.at(currentChannel)[histoName] = directories.at(currentChannel).make<TH1D> (TString(histoName),channelLabel+" channel: Number of Selected "+currentObject+"; # "+currentObject, maxNum, 0, maxNum);
344 <    }
345 <
346 <
347 <
348 <
307 >    vector<TFileDirectory> directories; //vector of directories in the output file.
308 >    vector<TFileDirectory> treeDirectories; //vector of directories for trees in the output file.
309 >    vector<string> subSubDirNames;//subdirectories in each channel.
310      //get list of cuts for this channel
311      vector<edm::ParameterSet> cuts_  (channels_.at(currentChannel).getParameter<vector<edm::ParameterSet> >("cuts"));
312  
313 +
314      //loop over and parse all cuts
315      for(uint currentCut = 0; currentCut != cuts_.size(); currentCut++){
316        cut tempCut;
317        //store input collection for cut
318        string tempInputCollection = cuts_.at(currentCut).getParameter<string> ("inputCollection");
319        if(tempInputCollection == "muon-electron pairs") tempInputCollection = "electron-muon pairs";
320 +      if(tempInputCollection == "photon-electron pairs") tempInputCollection = "electron-photon pairs";
321 +      if(tempInputCollection == "photon-muon pairs") tempInputCollection = "muon-photon pairs";
322 +      if(tempInputCollection == "jet-electron pairs") tempInputCollection = "electron-jet pairs";
323 +      if(tempInputCollection == "jet-muon pairs") tempInputCollection = "muon-jet pairs";
324 +      if(tempInputCollection == "event-muon pairs") tempInputCollection = "muon-event pairs";
325 +      if(tempInputCollection == "jet-met pairs")  tempInputCollection = "met-jet pairs";
326 +      if(tempInputCollection == "track-jet pairs")  tempInputCollection = "track-jet pairs";
327 +      if(tempInputCollection == "jet-photon pairs") tempInputCollection = "photon-jet pairs";
328        if(tempInputCollection == "event-track pairs")   tempInputCollection = "track-event pairs";
329        if(tempInputCollection == "secondary muon-muon pairs")   tempInputCollection = "muon-secondary muon pairs";
330 +      if(tempInputCollection == "secondary jet-jet pairs")   tempInputCollection = "jet-secondary jet pairs";
331 +      if(tempInputCollection == "secondary jet-muon pairs")   tempInputCollection = "muon-secondary jet pairs";
332 +      if(tempInputCollection == "secondary photon-muon pairs")   tempInputCollection = "muon-secondary photon pairs";
333 +      if(tempInputCollection == "secondary jet-photon pairs")   tempInputCollection = "photon-secondary jet pairs";
334 +      if(tempInputCollection == "secondary jet-electron pairs")   tempInputCollection = "electron-secondary jet pairs";
335 +      if(tempInputCollection == "secondary electron-electron pairs")   tempInputCollection = "electron-secondary electron pairs";
336 +      if(tempInputCollection == "trigobj-electron pairs")   tempInputCollection = "electron-trigobj pairs";
337 +      if(tempInputCollection == "trigobj-muon pairs")   tempInputCollection = "muon-trigobj pairs";
338        tempCut.inputCollection = tempInputCollection;
339 <      if(tempInputCollection.find("pairs")==std::string::npos){ //just a single object
340 <        if(tempInputCollection.find("secondary")!=std::string::npos){//secondary object
341 <          int spaceIndex = tempInputCollection.find(" ");
342 <          int secondWordLength = tempInputCollection.size() - spaceIndex;
343 <          objectsToGet.push_back(tempInputCollection.substr(spaceIndex+1,secondWordLength));
344 <        }
345 <        else{
346 <          objectsToGet.push_back(tempInputCollection);
347 <        }
348 <        objectsToCut.push_back(tempInputCollection);
339 >      if(tempInputCollection.find("pairs")==string::npos){ //just a single object
340 >        if(tempInputCollection.find("secondary")!=string::npos){//secondary object
341 >          if(tempInputCollection.find("secondary muons")!=string::npos){//treat secondary muons differently; allow for a different input collection
342 >            objectsToGet.push_back("secondary muons");  
343 >          } else {
344 >            int spaceIndex = tempInputCollection.find(" ");
345 >            int secondWordLength = tempInputCollection.size() - spaceIndex;
346 >            objectsToGet.push_back(tempInputCollection.substr(spaceIndex+1,secondWordLength));
347 >          }
348 >        }
349 >        else{
350 >          objectsToGet.push_back(tempInputCollection);
351 >        }
352 >        objectsToCut.push_back(tempInputCollection);
353 >        objectsToFlag.push_back(tempInputCollection);
354        }
355        else{//pair of objects, need to add them both to objectsToGet
356 <        string obj1;
357 <        string obj2;
358 <        getTwoObjs(tempInputCollection, obj1, obj2);
359 <        string obj2ToGet = getObjToGet(obj2);  
356 >        string obj1;
357 >        string obj2;
358 >        getTwoObjs(tempInputCollection, obj1, obj2);
359 >        string obj2ToGet = getObjToGet(obj2);
360          objectsToCut.push_back(tempInputCollection);
361          objectsToCut.push_back(obj1);
362 <        objectsToCut.push_back(obj2);  
362 >        objectsToCut.push_back(obj2);
363 >        objectsToFlag.push_back(tempInputCollection);
364 >        objectsToFlag.push_back(obj1);
365 >        objectsToFlag.push_back(obj2);
366          objectsToGet.push_back(tempInputCollection);
367          objectsToGet.push_back(obj1);
368          objectsToGet.push_back(obj2ToGet);
# Line 387 | Line 373 | OSUAnalysis::OSUAnalysis (const edm::Par
373  
374        //split cut string into parts and store them
375        string cutString = cuts_.at(currentCut).getParameter<string> ("cutString");
376 <      std::vector<string> cutStringVector = splitString(cutString);
376 >      vector<string> cutStringVector = splitString(cutString);
377        if(cutStringVector.size()!=3 && cutStringVector.size() % 4 !=3){
378 <        std::cout << "Error: Didn't find the expected number elements in the following cut string: '" << cutString << "'\n";
378 >        clog << "Error: Didn't find the expected number elements in the following cut string: '" << cutString << "'\n";
379          exit(0);
380        }
381        tempCut.numSubcuts = (cutStringVector.size()+1)/4;
382        for(int subcutIndex = 0; subcutIndex != tempCut.numSubcuts; subcutIndex++){//loop over all the pieces of the cut combined using &,|
383          int indexOffset = 4 * subcutIndex;
384          string currentVariableString = cutStringVector.at(indexOffset);
385 <        if(currentVariableString.find("(")==std::string::npos){
385 >        if(currentVariableString.find("(")==string::npos){
386            tempCut.functions.push_back("");//no function was specified
387            tempCut.variables.push_back(currentVariableString);// variable to cut on
388          }
# Line 407 | Line 393 | OSUAnalysis::OSUAnalysis (const edm::Par
393          }
394          tempCut.comparativeOperators.push_back(cutStringVector.at(indexOffset+1));// comparison to make
395          tempCut.cutValues.push_back(atof(cutStringVector.at(indexOffset+2).c_str()));// threshold value to pass cut
396 +        tempCut.cutStringValues.push_back(cutStringVector.at(indexOffset+2));// string value to pass cut
397          if(subcutIndex != 0) tempCut.logicalOperators.push_back(cutStringVector.at(indexOffset-1)); // logical comparison (and, or)
398        }
399  
400        //get number of objects required to pass cut for event to pass
401        string numberRequiredString = cuts_.at(currentCut).getParameter<string> ("numberRequired");
402 <      std::vector<string> numberRequiredVector = splitString(numberRequiredString);
402 >      vector<string> numberRequiredVector = splitString(numberRequiredString);
403        if(numberRequiredVector.size()!=2){
404 <        std::cout << "Error: Didn't find two elements in the following number requirement string: '" << numberRequiredString << "'\n";
404 >        clog << "Error: Didn't find two elements in the following number requirement string: '" << numberRequiredString << "'\n";
405          exit(0);
406        }
407  
# Line 422 | Line 409 | OSUAnalysis::OSUAnalysis (const edm::Par
409        tempCut.numberRequired = numberRequiredInt;// number of objects required to pass the cut
410        tempCut.eventComparativeOperator = numberRequiredVector.at(0);// comparison to make
411  
412 <
412 >      //Set up vectors to store the directories and subDirectories for each channel.
413 >      string subSubDirName;
414        string tempCutName;
415        if(cuts_.at(currentCut).exists("alias")){
416          tempCutName = cuts_.at(currentCut).getParameter<string> ("alias");
417 +        subSubDirName = "After " + tempCutName + " Cut Applied";
418        }
419        else{
420          //construct string for cutflow table
# Line 433 | Line 422 | OSUAnalysis::OSUAnalysis (const edm::Par
422          string collectionString = plural ? tempInputCollection : tempInputCollection.substr(0, tempInputCollection.size()-1);
423          string cutName =  numberRequiredString + " " + collectionString + " with " + cutString;
424          tempCutName = cutName;
425 +        subSubDirName = "After " + numberRequiredString + " " + collectionString + " with " + cutString + " Cut Applied";
426 +      }
427 +
428 +      tempCut.isVeto = false;
429 +      if(cuts_.at(currentCut).exists("isVeto")){
430 +        bool isVeto = cuts_.at(currentCut).getParameter<bool> ("isVeto");
431 +        if (isVeto == true) tempCut.isVeto = true;
432        }
433 +      subSubDirNames.push_back(subSubDirName);
434        tempCut.name = tempCutName;
435 +      if (verbose_) clog << "Setting up cut, index: " << currentCut << ", input collection: " << tempInputCollection<< ", name: " << tempCut.name << endl;  
436  
437        tempChannel.cuts.push_back(tempCut);
438  
439  
440      }//end loop over cuts
441  
442 +    vector<map<string, TH1D*>> oneDHistsTmp;
443 +    vector<map<string, TH2D*>> twoDHistsTmp;
444 +    //book a directory in the output file with the name of the channel
445 +    TFileDirectory subDir = fs_->mkdir( channelName );
446 +    //loop over the cuts to set up subdirectory for each cut if GetPlotsAfterEachCut_ is true.
447 +    if(GetPlotsAfterEachCut_){
448 +      for( uint currentDir=0; currentDir != subSubDirNames.size(); currentDir++){
449 +        TFileDirectory subSubDir = subDir.mkdir( subSubDirNames[currentDir] );
450 +        directories.push_back(subSubDir);
451 +        map<string, TH1D*> oneDhistoMap;
452 +        oneDHistsTmp.push_back(oneDhistoMap);
453 +        map<string, TH2D*> twoDhistoMap;
454 +        twoDHistsTmp.push_back(twoDhistoMap);
455 +      }
456 +      treeDirectories.push_back(subDir);
457 +      oneDHists_.push_back(oneDHistsTmp);
458 +      twoDHists_.push_back(twoDHistsTmp);
459 +    }
460 +    //only set up directories with names of the channels if GetPlotsAfterEachCut_ is false.
461 +    else{
462 +      map<string, TH1D*> oneDhistoMap;
463 +      oneDHistsTmp.push_back(oneDhistoMap);
464 +      map<string, TH2D*> twoDhistoMap;
465 +      twoDHistsTmp.push_back(twoDhistoMap);
466 +      oneDHists_.push_back(oneDHistsTmp);
467 +      twoDHists_.push_back(twoDHistsTmp);
468 +      directories.push_back(subDir);
469 +      treeDirectories.push_back(subDir);
470 +
471 +    }
472 +
473 +    for(uint currentDir = 0; !useEDMFormat_ && currentDir != treeDirectories.size(); currentDir++){
474 +      TTree* newTree = treeDirectories.at(currentDir).make<TTree> (TString("BNTree_"+channelLabel), TString("BNTree_"+channelLabel));
475 +      BNTrees_.push_back(newTree);
476 +      BNTrees_.back()->Branch("event_runInt",  &BNTreeBranchVals_runInt_,  "event_runInt/I");      
477 +      BNTrees_.back()->Branch("event_lumiInt", &BNTreeBranchVals_lumiInt_, "event_lumiInt/I");      
478 +      BNTrees_.back()->Branch("event_evtLong", &BNTreeBranchVals_evtLong_, "event_evtLong/L");      
479 +      for (uint iBranch = 0; iBranch < treeBranches_.size(); iBranch++){
480 +        BranchSpecs currentVar = treeBranches_.at(iBranch);
481 +        vector<float> newVec;
482 +        BNTreeBranchVals_[currentVar.name] = newVec;
483 +        BNTrees_.back()->Branch(TString(currentVar.name), &BNTreeBranchVals_.at(currentVar.name));
484 +      } // end for (uint iBranch = 0; iBranch < treeBranches_.size(); iBranch++)
485 +    }
486 +
487 +    //book all histograms included in the configuration
488 +    for(uint currentDir = 0; currentDir != directories.size(); currentDir++){//loop over all the directories.
489 +
490 +      for(uint currentHistogramIndex = 0; currentHistogramIndex != histograms.size(); currentHistogramIndex++){
491 +
492 +        histogram currentHistogram = histograms.at(currentHistogramIndex);
493 +        int numBinsElements = currentHistogram.bins.size();
494 +        int numInputVariables = currentHistogram.inputVariables.size();
495 +        int numBinEdgesX = currentHistogram.variableBinsX.size();
496 +        int numBinEdgesY = currentHistogram.variableBinsY.size();
497 +
498 +        if(numBinsElements == 1){
499 +          if(numBinEdgesX > 1){
500 +            if(numBinEdgesY > 1)
501 +              numBinsElements = 6;
502 +            else
503 +              numBinsElements = 3;
504 +          }
505 +        }
506 +        if(numBinsElements != 3 && numBinsElements !=6){
507 +          clog << "Error: Didn't find correct number of bin specifications for histogram named '" << currentHistogram.name << "'\n";
508 +          exit(0);
509 +        }
510 +        else if((numBinsElements == 3 && numInputVariables !=1) || (numBinsElements == 6 && numInputVariables!=2)){
511 +          clog << "Error: Didn't find correct number of input variables for histogram named '" << currentHistogram.name << "'\n";
512 +          exit(0);
513 +        }
514 +        else if(numBinsElements == 3){
515 +          if (currentHistogram.bins.size () == 3)
516 +            oneDHists_.at(currentChannel).at(currentDir)[currentHistogram.name] = directories.at(currentDir).make<TH1D> (TString(currentHistogram.name),channelLabel+" channel: "+currentHistogram.title, currentHistogram.bins.at(0), currentHistogram.bins.at(1), currentHistogram.bins.at(2));
517 +          else
518 +            {
519 +              oneDHists_.at(currentChannel).at(currentDir)[currentHistogram.name] = directories.at(currentDir).make<TH1D> (TString(currentHistogram.name),channelLabel+" channel: "+currentHistogram.title, numBinEdgesX - 1, currentHistogram.variableBinsX.data ());
520 +            }
521 +        }
522 +        else if(numBinsElements == 6){
523 +          if (currentHistogram.bins.size () == 6)
524 +            twoDHists_.at(currentChannel).at(currentDir)[currentHistogram.name] = directories.at(currentDir).make<TH2D> (TString(currentHistogram.name),channelLabel+" channel: "+currentHistogram.title, currentHistogram.bins.at(0), currentHistogram.bins.at(1), currentHistogram.bins.at(2),currentHistogram.bins.at(3),currentHistogram.bins.at(4),currentHistogram.bins.at(5));
525 +          else
526 +            twoDHists_.at(currentChannel).at(currentDir)[currentHistogram.name] = directories.at(currentDir).make<TH2D> (TString(currentHistogram.name),channelLabel+" channel: "+currentHistogram.title, numBinEdgesX - 1, currentHistogram.variableBinsX.data (), numBinEdgesY - 1, currentHistogram.variableBinsY.data ());
527 +        }
528 +
529 +
530 +        if(currentHistogram.name.find("GenMatch")==string::npos) continue;
531 +
532 +        // bin      particle type
533 +        // ---      -------------
534 +        //  0        unmatched
535 +        //  1        u
536 +        //  2        d
537 +        //  3        s
538 +        //  4        c
539 +        //  5        b
540 +        //  6        t
541 +        //  7        e
542 +        //  8        mu
543 +        //  9        tau
544 +        // 10        nu
545 +        // 11        g
546 +        // 12        gamma
547 +        // 13        Z
548 +        // 14        W
549 +        // 15        light meson
550 +        // 16        K meson
551 +        // 17        D meson
552 +        // 18        B meson
553 +        // 19        light baryon
554 +        // 20        strange baryon
555 +        // 21        charm baryon
556 +        // 22        bottom baryon
557 +        // 23        QCD string
558 +        // 24        other
559 +
560 +        vector<TString> labelArray;
561 +        labelArray.push_back("unmatched");
562 +        labelArray.push_back("u");
563 +        labelArray.push_back("d");
564 +        labelArray.push_back("s");
565 +        labelArray.push_back("c");
566 +        labelArray.push_back("b");
567 +        labelArray.push_back("t");
568 +        labelArray.push_back("e");
569 +        labelArray.push_back("#mu");
570 +        labelArray.push_back("#tau");
571 +        labelArray.push_back("#nu");
572 +        labelArray.push_back("g");
573 +        labelArray.push_back("#gamma");
574 +        labelArray.push_back("Z");
575 +        labelArray.push_back("W");
576 +        labelArray.push_back("light meson");
577 +        labelArray.push_back("K meson");
578 +        labelArray.push_back("D meson");
579 +        labelArray.push_back("B meson");
580 +        labelArray.push_back("light baryon");
581 +        labelArray.push_back("strange baryon");
582 +        labelArray.push_back("charm baryon");
583 +        labelArray.push_back("bottom baryon");
584 +        labelArray.push_back("QCD string");
585 +        labelArray.push_back("other");
586 +
587 +        for(int bin = 0; bin !=currentHistogram.bins.at(0); bin++){
588 +          if(currentHistogram.name.find("GenMatchIdVsMotherId")==string::npos && currentHistogram.name.find("GenMatchIdVsGrandmotherId")==string::npos) {
589 +            oneDHists_.at(currentChannel).at(currentDir)[currentHistogram.name]->GetXaxis()->SetBinLabel(bin+1,labelArray.at(bin));
590 +          }
591 +          else {
592 +            twoDHists_.at(currentChannel).at(currentDir)[currentHistogram.name]->GetYaxis()->SetBinLabel(bin+1,labelArray.at(currentHistogram.bins.at(0)-bin-1));
593 +            twoDHists_.at(currentChannel).at(currentDir)[currentHistogram.name]->GetXaxis()->SetBinLabel(bin+1,labelArray.at(bin));
594 +          }
595 +        }
596 +        if(currentHistogram.name.find("GenMatchIdVsMotherId")!=string::npos || currentHistogram.name.find("GenMatchIdVsGrandmotherId")!=string::npos) {
597 +          twoDHists_.at(currentChannel).at(currentDir)[currentHistogram.name]->GetXaxis()->CenterTitle();
598 +          twoDHists_.at(currentChannel).at(currentDir)[currentHistogram.name]->GetYaxis()->CenterTitle();
599 +        }
600 +
601 +      }  // end      for(uint currentHistogramIndex = 0; currentHistogramIndex != histograms.size(); currentHistogramIndex++)
602 +
603 +
604 +      // Book a histogram for the number of each object type to be plotted.
605 +      // Name of objectToPlot here must match the name specified in OSUAnalysis::analyze().
606 +      for (uint currentObjectIndex = 0; currentObjectIndex != objectsToPlot.size(); currentObjectIndex++){
607 +        string currentObject = objectsToPlot.at(currentObjectIndex);
608 +        int maxNum = 10;
609 +        if(currentObject == "mcparticles") maxNum = 50;
610 +        else if(currentObject == "primaryvertexs") maxNum = 50;
611 +
612 +        if(currentObject == "muon-muon pairs")                currentObject = "dimuonPairs";
613 +        else if(currentObject == "electron-electron pairs")   currentObject = "dielectronPairs";
614 +        else if(currentObject == "electron-muon pairs")       currentObject = "electronMuonPairs";
615 +        else if(currentObject == "electron-photon pairs")     currentObject = "electronPhotonPairs";
616 +        else if(currentObject == "muon-photon pairs")         currentObject = "muonPhotonPairs";
617 +        else if(currentObject == "secondary jets")            currentObject = "secondaryJets";
618 +        else if(currentObject == "secondary photons")            currentObject = "secondaryPhotons";
619 +        else if(currentObject == "jet-jet pairs")             currentObject = "dijetPairs";
620 +        else if(currentObject == "jet-secondary jet pairs")   currentObject = "jetSecondaryJetPairs";
621 +        else if(currentObject == "electron-jet pairs")        currentObject = "electronJetPairs";
622 +        else if(currentObject == "muon-jet pairs")            currentObject = "muonJetPairs";
623 +        else if(currentObject == "muon-event pairs")            currentObject = "muonEventPairs";
624 +        else if(currentObject == "photon-jet pairs")            currentObject = "photonJetPairs";
625 +        else if(currentObject == "met-jet pairs")             currentObject = "metJetPairs";
626 +        else if(currentObject == "track-jet pairs")           currentObject = "trackJetPairs";
627 +        else if(currentObject == "muon-secondary jet pairs")  currentObject = "muonSecondaryJetPairs";
628 +        else if(currentObject == "muon-secondary photon pairs")  currentObject = "muonSecondaryPhotonPairs";
629 +        else if(currentObject == "photon-secondary jet pairs")  currentObject = "photonSecondaryJetPairs";
630 +        else if(currentObject == "electron-secondary jet pairs")  currentObject = "electronSecondaryJetPairs";
631 +        else if(currentObject == "track-event pairs")         currentObject = "trackEventPairs";
632 +        else if(currentObject == "electron-track pairs")      currentObject = "electronTrackPairs";
633 +        else if(currentObject == "muon-track pairs")          currentObject = "muonTrackPairs";
634 +        else if(currentObject == "secondary muon-track pairs") currentObject = "secondaryMuonTrackPairs";
635 +        else if(currentObject == "muon-tau pairs")            currentObject = "muonTauPairs";
636 +        else if(currentObject == "tau-tau pairs")             currentObject = "ditauPairs";
637 +        else if(currentObject == "tau-track pairs")           currentObject = "tauTrackPairs";
638 +        else if(currentObject == "muon-secondary muon pairs") currentObject = "muonSecondaryMuonPairs";
639 +        else if(currentObject == "secondary muons")           currentObject = "secondaryMuons";
640 +        else if(currentObject == "electron-secondary electron pairs") currentObject = "electronSecondaryElectronPairs";
641 +        else if(currentObject == "secondary electrons")       currentObject = "secondaryElectrons";
642 +        else if(currentObject == "electron-trigobj pairs")    currentObject = "electronTrigobjPairs";
643 +        else if(currentObject == "muon-trigobj pairs")        currentObject = "muonTrigobjPairs";
644 +        else if(currentObject == "electron-mcparticle pairs")   currentObject = "electronMCparticlePairs";
645 +
646 +
647 +        currentObject.at(0) = toupper(currentObject.at(0));
648 +        string histoName = "num" + currentObject;
649 +
650 +        if(histoName == "numPrimaryvertexs"){
651 +          string newHistoName = histoName + "BeforePileupCorrection";
652 +          oneDHists_.at(currentChannel).at(currentDir)[newHistoName] = directories.at(currentDir).make<TH1D> (TString(newHistoName),channelLabel+" channel: Number of Selected "+currentObject+" Before Pileup Correction; # "+currentObject, maxNum, 0, maxNum);
653 +          newHistoName = histoName + "AfterPileupCorrection";
654 +          oneDHists_.at(currentChannel).at(currentDir)[newHistoName] = directories.at(currentDir).make<TH1D> (TString(newHistoName),channelLabel+" channel: Number of Selected "+currentObject+ " After Pileup Correction; # "+currentObject, maxNum, 0, maxNum);
655 +        }
656 +        else
657 +          oneDHists_.at(currentChannel).at(currentDir)[histoName] = directories.at(currentDir).make<TH1D> (TString(histoName),channelLabel+" channel: Number of Selected "+currentObject+"; # "+currentObject, maxNum, 0, maxNum);
658 +      }
659 +
660 +      if (verbose_) {
661 +        clog << "List of 1D histograms booked for channel " << channelName << " and directory " << currentDir << ":" << endl;
662 +        for(map<string, TH1D*>::iterator
663 +              iter = oneDHists_.at(currentChannel).at(currentDir).begin();
664 +            iter  != oneDHists_.at(currentChannel).at(currentDir).end();
665 +            iter++) {
666 +          clog << " " << iter->first
667 +               << ":  name=" << iter->second->GetName()
668 +               << ", title=" << iter->second->GetTitle()
669 +               << ", bins=(" << iter->second->GetNbinsX()
670 +               << "," << iter->second->GetXaxis()->GetXmin()
671 +               << "," << iter->second->GetXaxis()->GetXmax()
672 +               << ")" << endl;
673 +        }  
674 +        clog << "List of 2D histograms booked for channel " << channelName << " and directory " << currentDir << ":" << endl;
675 +        for(map<string, TH2D*>::iterator
676 +              iter = twoDHists_.at(currentChannel).at(currentDir).begin();
677 +            iter  != twoDHists_.at(currentChannel).at(currentDir).end();
678 +            iter++) {
679 +          clog << " " << iter->first
680 +               << ":  name=" << iter->second->GetName()
681 +               << ", title=" << iter->second->GetTitle()
682 +               << ", binsX=(" << iter->second->GetNbinsX()
683 +               << "," << iter->second->GetXaxis()->GetXmin()
684 +               << "," << iter->second->GetXaxis()->GetXmax()
685 +               << ")"
686 +               << ", binsY=(" << iter->second->GetNbinsY()
687 +               << "," << iter->second->GetYaxis()->GetXmin()
688 +               << "," << iter->second->GetYaxis()->GetXmax()
689 +               << ")"
690 +               << endl;
691 +        }  
692 +      }
693 +
694 +    }//end of loop over directories
695      channels.push_back(tempChannel);
696      tempChannel.cuts.clear();
446
697    }//end loop over channels
698  
699  
700 +  // Create the cutflow histogram and fill with 0 weight, in case no events are found in the input file.  
701 +  for(uint currentChannelIndex = 0; currentChannelIndex != channels.size(); currentChannelIndex++){
702 +    channel currentChannel = channels.at(currentChannelIndex);
703 +    if(currentChannel.triggers.size() != 0 || currentChannel.triggersToVeto.size() != 0){  //triggers specified
704 +      cutFlows_.at(currentChannelIndex)->at("trigger") = true;  
705 +    }
706 +    for(uint currentCutIndex = 0; currentCutIndex != currentChannel.cuts.size(); currentCutIndex++){
707 +      cut currentCut = currentChannel.cuts.at(currentCutIndex);
708 +      cutFlows_.at(currentChannelIndex)->at (currentCut.name) = true;
709 +    }
710 +    cutFlows_.at(currentChannelIndex)->fillCutFlow(0);  // fill cutflow with 0 weight, just to create the cutflow histograms  
711 +  }
712 +
713    //make unique vector of objects we need to get from the event
714    sort( objectsToGet.begin(), objectsToGet.end() );
715    objectsToGet.erase( unique( objectsToGet.begin(), objectsToGet.end() ), objectsToGet.end() );
716    //make unique vector of objects we need to cut on
717    sort( objectsToCut.begin(), objectsToCut.end() );
718    objectsToCut.erase( unique( objectsToCut.begin(), objectsToCut.end() ), objectsToCut.end() );
719 +  //make unique vector of objects we need to set flags for
720 +  sort( objectsToFlag.begin(), objectsToFlag.end() );
721 +  objectsToFlag.erase( unique( objectsToFlag.begin(), objectsToFlag.end() ), objectsToFlag.end() );
722  
723 +  // Move all paired objects to the end of the list, so that the flags for single objects are always set before those of paired objects.  
724 +  for (uint i=0; i<objectsToFlag.size(); i++) {
725 +    if (objectsToFlag.at(i).find("pairs")!=string::npos) { // if it contains "pairs"
726 +      objectsToFlag.push_back(objectsToFlag.at(i));  
727 +      objectsToFlag.erase(objectsToFlag.begin()+i);  
728 +    }
729 +  }
730 +
731 +  if (verbose_) {
732 +    clog << "List of channels:" << endl;
733 +    for (uint i=0; i<channels.size(); i++) {
734 +      clog << " " << channels.at(i).name << endl;
735 +    }
736 +    clog << "List of objects to get:" << endl;
737 +    for (uint i=0; i<objectsToGet.size(); i++) {
738 +      clog << " " << objectsToGet.at(i) << endl;
739 +    }
740 +    clog << "List of objects to plot:" << endl;
741 +    for (uint i=0; i<objectsToPlot.size(); i++) {
742 +      clog << " " << objectsToPlot.at(i) << endl;
743 +    }
744 +    clog << "List of objects to cut:" << endl;
745 +    for (uint i=0; i<objectsToCut.size(); i++) {
746 +      clog << " " << objectsToCut.at(i) << endl;
747 +    }
748 +    clog << "List of objects to flag:" << endl;
749 +    for (uint i=0; i<objectsToFlag.size(); i++) {
750 +      clog << " " << objectsToFlag.at(i) << endl;
751 +    }
752 +  }
753 +
754 +  produces<map<string, bool> > ("channelDecisions");
755 +
756 +  if (printEventInfo_) {
757 +    findEventsLog = new ofstream();  
758 +    findEventsLog->open("findEvents.txt");  
759 +    clog << "Listing run:lumi:event in file findEvents.txt for events that pass full selection (of any channel)." << endl;  
760 +  } else {
761 +    findEventsLog = 0;
762 +  }  
763 +
764 +  isFirstEvent_ = true;  
765 +
766 +  if (verbose_) clog << "Finished OSUAnalysis::OSUAnalysis constructor." << endl;  
767 +
768 +
769 +  } // end constructor OSUAnalysis::OSUAnalysis()
770  
458 }
771  
772   OSUAnalysis::~OSUAnalysis ()
773   {
774 +
775 +  if (verbose_) clog << "Beginning OSUAnalysis::OSUAnalysis destructor." << endl;  
776 +
777    // Destroying the CutFlow objects causes the cut flow numbers and time
778    // information to be printed to standard output.
779    for(uint currentChannel = 0; currentChannel != channels_.size(); currentChannel++){
780      delete cutFlows_.at(currentChannel);
781    }
782 +
783 +  if (printEventInfo_ && findEventsLog) findEventsLog->close();  
784 +
785 +  clog << "=============================================" << endl;  
786 +  clog << "Successfully completed OSUAnalysis." << endl;  
787 +  clog << "=============================================" << endl;  
788 +
789 +  if (verbose_) clog << "Finished OSUAnalysis::OSUAnalysis destructor." << endl;  
790 +
791   }
792  
793   void
794 < OSUAnalysis::analyze (const edm::Event &event, const edm::EventSetup &setup)
794 > OSUAnalysis::produce (edm::Event &event, const edm::EventSetup &setup)
795   {
472
796    // Retrieve necessary collections from the event.
797  
798 <  if (std::find(objectsToGet.begin(), objectsToGet.end(), "triggers") != objectsToGet.end())
798 >  if (verbose_) clog << "Beginning OSUAnalysis::produce." << endl;  
799 >
800 >  if (find(objectsToGet.begin(), objectsToGet.end(), "triggers") != objectsToGet.end()) {
801      event.getByLabel (triggers_, triggers);
802 +    if (!triggers.product()) cout << "ERROR:  could not get triggers input collection" << endl;  
803 +  }
804  
805 <  if (std::find(objectsToGet.begin(), objectsToGet.end(), "jets") != objectsToGet.end())
805 >  if (find(objectsToGet.begin(), objectsToGet.end(), "trigobjs") != objectsToGet.end()) {
806 >    event.getByLabel (trigobjs_, trigobjs);
807 >    if (!trigobjs.product()) cout << "ERROR:  could not get trigobjs input collection" << endl;  
808 >  }
809 >
810 >  if (find(objectsToGet.begin(), objectsToGet.end(), "jets") != objectsToGet.end()) {
811      event.getByLabel (jets_, jets);
812 +    if (!jets.product()) cout << "ERROR:  could not get jets input collection" << endl;  
813 +  }
814  
815 <  if (std::find(objectsToGet.begin(), objectsToGet.end(), "muons") != objectsToGet.end())
815 >  if (find(objectsToGet.begin(), objectsToGet.end(), "muons") != objectsToGet.end()) {
816      event.getByLabel (muons_, muons);
817 +    if (!muons.product()) cout << "ERROR:  could not get muons input collection" << endl;  
818 +  }
819  
820 <  if (std::find(objectsToGet.begin(), objectsToGet.end(), "electrons") != objectsToGet.end())
820 >  if (find(objectsToGet.begin(), objectsToGet.end(), "secondary muons") != objectsToGet.end()) {
821 >    event.getByLabel (secMuons_, secMuons);
822 >    if (!secMuons.product()) cout << "ERROR:  could not get secMuons input collection" << endl;  
823 >  }
824 >
825 >  if (find(objectsToGet.begin(), objectsToGet.end(), "electrons") != objectsToGet.end()) {
826      event.getByLabel (electrons_, electrons);
827 +    if (!electrons.product()) cout << "ERROR:  could not get electrons input collection" << endl;  
828 +  }
829  
830 <  if (std::find(objectsToGet.begin(), objectsToGet.end(), "events") != objectsToGet.end())
830 >  if (find(objectsToGet.begin(), objectsToGet.end(), "events") != objectsToGet.end()) {
831      event.getByLabel (events_, events);
832 +    if (!events.product()) cout << "ERROR:  could not get events input collection" << endl;  
833 +  }
834  
835 <  if (std::find(objectsToGet.begin(), objectsToGet.end(), "taus") != objectsToGet.end())
835 >  if (find(objectsToGet.begin(), objectsToGet.end(), "taus") != objectsToGet.end()) {
836      event.getByLabel (taus_, taus);
837 +    if (!taus.product()) cout << "ERROR:  could not get taus input collection" << endl;  
838 +  }
839  
840 <  if (std::find(objectsToGet.begin(), objectsToGet.end(), "mets") != objectsToGet.end())
840 >  if (find(objectsToGet.begin(), objectsToGet.end(), "mets") != objectsToGet.end()) {
841      event.getByLabel (mets_, mets);
842 +    if (!mets.product()) cout << "ERROR:  could not get mets input collection" << endl;  
843 +  }
844  
845 <  if (std::find(objectsToGet.begin(), objectsToGet.end(), "tracks") != objectsToGet.end())
845 >  if (find(objectsToGet.begin(), objectsToGet.end(), "tracks") != objectsToGet.end()) {
846      event.getByLabel (tracks_, tracks);
847 +    if (!tracks.product()) cout << "ERROR:  could not get tracks input collection" << endl;  
848 +  }
849  
850 <  if (std::find(objectsToGet.begin(), objectsToGet.end(), "genjets") != objectsToGet.end())
850 >  if (find(objectsToGet.begin(), objectsToGet.end(), "genjets") != objectsToGet.end()) {
851      event.getByLabel (genjets_, genjets);
852 +    if (!genjets.product()) cout << "ERROR:  could not get genjets input collection" << endl;  
853 +  }
854  
855 <  if (std::find(objectsToGet.begin(), objectsToGet.end(), "mcparticles") != objectsToGet.end())
855 >  if (find(objectsToGet.begin(), objectsToGet.end(), "mcparticles") != objectsToGet.end()) {
856      event.getByLabel (mcparticles_, mcparticles);
857 +    if (!mcparticles.product()) cout << "ERROR:  could not get mcparticles input collection" << endl;  
858 +  }
859  
860 <  if (std::find(objectsToGet.begin(), objectsToGet.end(), "primaryvertexs") != objectsToGet.end())
860 >  if (find(objectsToGet.begin(), objectsToGet.end(), "primaryvertexs") != objectsToGet.end()) {
861      event.getByLabel (primaryvertexs_, primaryvertexs);
862 +    if (!primaryvertexs.product()) cout << "ERROR:  could not get primaryvertexs input collection" << endl;  
863 +  }
864  
865 <  if (std::find(objectsToGet.begin(), objectsToGet.end(), "bxlumis") != objectsToGet.end())
865 >  if (find(objectsToGet.begin(), objectsToGet.end(), "bxlumis") != objectsToGet.end()) {
866      event.getByLabel (bxlumis_, bxlumis);
867 +    if (!bxlumis.product()) cout << "ERROR:  could not get bxlumis input collection" << endl;  
868 +  }
869  
870 <  if (std::find(objectsToGet.begin(), objectsToGet.end(), "photons") != objectsToGet.end())
870 >  if (find(objectsToGet.begin(), objectsToGet.end(), "photons") != objectsToGet.end()) {
871      event.getByLabel (photons_, photons);
872 +    if (!photons.product()) cout << "ERROR:  could not get photons input collection" << endl;  
873 +  }
874  
875 <  if (std::find(objectsToGet.begin(), objectsToGet.end(), "superclusters") != objectsToGet.end())
875 >  if (find(objectsToGet.begin(), objectsToGet.end(), "superclusters") != objectsToGet.end()) {
876      event.getByLabel (superclusters_, superclusters);
877 +    if (!superclusters.product()) cout << "ERROR:  could not get superclusters input collection" << endl;  
878 +  }
879 +
880 +  if (datasetType_ == "signalMC"){
881 +    if (find(objectsToGet.begin(), objectsToGet.end(), "stops") != objectsToGet.end()) {
882 +      event.getByLabel (stops_, stops);
883 +      if (!stops.product()) cout << "ERROR:  could not get stops input collection" << endl;  
884 +    }
885 +  }
886  
887 <  if (useTrackCaloRhoCorr_) {  
888 <    // Used only for pile-up correction of by-hand calculation of isolation energy.  
889 <    // This rho collection is not available in all BEANs.  
887 >  if (useTrackCaloRhoCorr_) {
888 >    // Used only for pile-up correction of by-hand calculation of isolation energy.
889 >    // This rho collection is not available in all BEANs.
890      // For description of rho values for different jet reconstruction algorithms, see
891 <    // https://twiki.cern.ch/twiki/bin/view/CMS/JetAlgorithms#Algorithms  
892 <    event.getByLabel ("kt6CaloJets","rho", rhokt6CaloJetsHandle_);
891 >    // https://twiki.cern.ch/twiki/bin/view/CMS/JetAlgorithms#Algorithms
892 >    event.getByLabel ("kt6CaloJets","rho", rhokt6CaloJetsHandle_);
893 >    if (!rhokt6CaloJetsHandle_.product()) cout << "ERROR:  could not get kt6CaloJets input collection" << endl;  
894    }
895  
896 +  double masterScaleFactor = 1.0;
897  
898    //get pile-up event weight
899 <  double scaleFactor = 1.00;
900 <  if(doPileupReweighting_ && datasetType_ != "data")
901 <    scaleFactor = puWeight_->at (events->at (0).numTruePV);
902 <
903 <  cTauScaleFactor_ = 1.0;
904 < #ifdef DISPLACED_SUSY
905 <  if (datasetType_ == "signalMC")
906 <    cTauScaleFactor_ = cTauWeight_->at (event);
907 < #endif
908 <  scaleFactor *= cTauScaleFactor_;
899 >  if (doPileupReweighting_ && datasetType_ != "data") {
900 >    //for "data" datasets, the numTruePV is always set to -1
901 >    if (events->at(0).numTruePV < 0 && isFirstEvent_) clog << "WARNING[OSUAnalysis::analyze]: Event has numTruePV<0.  Turning off pile-up reweighting." << endl;
902 >    else masterScaleFactor *= puWeight_->at (events->at (0).numTruePV);
903 >  }
904 >
905 >  stopCTauScaleFactor_ = 1.0;
906 >  if (datasetType_ == "signalMC" && regex_match (dataset_, regex ("stop.*to.*_.*mm.*")))
907 >    stopCTauScaleFactor_ = stopCTauWeight_->at (event);
908 >  masterScaleFactor *= stopCTauScaleFactor_;
909  
910    //loop over all channels
911  
912 +  auto_ptr<map<string, bool> > channelDecisions (new map<string, bool>);
913    for(uint currentChannelIndex = 0; currentChannelIndex != channels.size(); currentChannelIndex++){
914      channel currentChannel = channels.at(currentChannelIndex);
915 +    if (verbose_>1) clog << " Processing channel " << currentChannel.name << endl;
916  
917      flagMap individualFlags;
918      counterMap passingCounter;
919      cumulativeFlags.clear ();
920  
921 +    for (map<string, vector<float>>::iterator iter = BNTreeBranchVals_.begin();
922 +         iter != BNTreeBranchVals_.end(); iter++) {
923 +      iter->second.clear();  // clear array
924 +    }
925 +
926      bool triggerDecision = true;
927 <    if(currentChannel.triggers.size() != 0){  //triggers specified
928 <      triggerDecision = evaluateTriggers(currentChannel.triggers,triggers.product());
927 >    if(currentChannel.triggers.size() != 0 || currentChannel.triggersToVeto.size() != 0){  //triggers specified
928 >      triggerDecision = evaluateTriggers(currentChannel.triggers, currentChannel.triggersToVeto, triggers.product());
929        cutFlows_.at(currentChannelIndex)->at ("trigger") = triggerDecision;
930      }
931  
932      //loop over all cuts
554
555
556
933      for(uint currentCutIndex = 0; currentCutIndex != currentChannel.cuts.size(); currentCutIndex++){
934        cut currentCut = currentChannel.cuts.at(currentCutIndex);
935 +      if (verbose_>2) clog << "  Processing cut, index: " << currentCutIndex << ", input collection: " << currentCut.inputCollection << ", name: " << currentCut.name << endl;  
936  
937 <      for(uint currentObjectIndex = 0; currentObjectIndex != objectsToCut.size(); currentObjectIndex++){
938 <        string currentObject = objectsToCut.at(currentObjectIndex);
937 >      for(uint currentObjectIndex = 0; currentObjectIndex != objectsToFlag.size(); currentObjectIndex++){
938 >        string currentObject = objectsToFlag.at(currentObjectIndex);
939  
940          //initialize maps to get ready to set cuts
941 <        individualFlags[currentObject].push_back (vector<bool> ());
942 <        cumulativeFlags[currentObject].push_back (vector<bool> ());
941 >        individualFlags[currentObject].push_back (vector<pair<bool,bool> > ());
942 >        cumulativeFlags[currentObject].push_back (vector<pair<bool,bool> > ());
943  
944        }
568      for(uint currentObjectIndex = 0; currentObjectIndex != objectsToCut.size(); currentObjectIndex++){
569        string currentObject = objectsToCut.at(currentObjectIndex);
570
571        int flagsForPairCutsIndex = max(int(currentCutIndex-1),0);
945  
946 +      //set flags for all relevant objects
947 +      for(int currentObjectIndex = -1; currentObjectIndex != int(objectsToFlag.size()); currentObjectIndex++){
948 +        string currentObject;  
949 +        if (currentObjectIndex < 0) currentObject = currentCut.inputCollection;  // In the first loop, set the flags for the collection that the cut is acting on.  That way other paired collections can access the correct flag for the current cut.  
950 +        else currentObject = objectsToFlag.at(currentObjectIndex);
951 +        if (currentObjectIndex >= 0 && currentObject == currentCut.inputCollection) continue;  // Flags have already been set for the inputCollection object, so should not be set again.  
952 +
953 +        // single object collections
954 +        if     (currentObject == "jets")                setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,jets.product(),"jets");
955 +        else if(currentObject == "secondary jets")      setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,jets.product(),"secondary jets");
956 +        else if(currentObject == "secondary photons")   setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,photons.product(),"secondary photons");
957 +        else if(currentObject == "muons")               setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,muons.product(),"muons");
958 +        else if(currentObject == "secondary muons")     setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,secMuons.product(),"secondary muons");
959 +        else if(currentObject == "secondary electrons") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,electrons.product(),"secondary electrons");
960 +        else if(currentObject == "electrons")           setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,electrons.product(),"electrons");
961 +        else if(currentObject == "events")              setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,events.product(),"events");
962 +        else if(currentObject == "taus")                setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,taus.product(),"taus");
963 +        else if(currentObject == "mets")                setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,mets.product(),"mets");
964 +        else if(currentObject == "tracks")              setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,tracks.product(),"tracks");
965 +        else if(currentObject == "genjets")             setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,genjets.product(),"genjets");
966 +        else if(currentObject == "mcparticles")         setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,mcparticles.product(),"mcparticles");
967 +        else if(currentObject == "primaryvertexs")      setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,primaryvertexs.product(),"primaryvertexs");
968 +        else if(currentObject == "bxlumis")             setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,bxlumis.product(),"bxlumis");
969 +        else if(currentObject == "photons")             setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,photons.product(),"photons");
970 +        else if(currentObject == "superclusters")       setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,superclusters.product(),"superclusters");
971 +        else if(currentObject == "trigobjs")            setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,trigobjs.product(),"trigobjs");
972 +
973 +
974 +        // paired object collections  
975 +        else if(currentObject == "muon-muon pairs")                   setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,muons.product(),muons.product(), "muon-muon pairs");
976 +        else if(currentObject == "muon-secondary muon pairs")         setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,muons.product(),secMuons.product(), "muon-secondary muon pairs");
977 +
978 +        else if(currentObject == "muon-secondary photon pairs")       setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,muons.product(),photons.product(), "muon-secondary photon pairs");
979 +        else if(currentObject == "muon-secondary jet pairs")          setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,muons.product(),jets.product(), "muon-secondary jet pairs");
980 +        else if(currentObject == "photon-secondary jet pairs")        setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,photons.product(),jets.product(), "photon-secondary jet pairs");
981 +        else if(currentObject == "electron-secondary jet pairs")      setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,electrons.product(),jets.product(), "electron-secondary jet pairs");
982 +        else if(currentObject == "electron-secondary electron pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,electrons.product(),electrons.product(), "electron-secondary electron pairs");
983 +
984 +        else if(currentObject == "electron-electron pairs")           setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,electrons.product(),electrons.product(), "electron-electron pairs");
985 +        else if(currentObject == "electron-muon pairs")     setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,electrons.product(),muons.product(), "electron-muon pairs");
986 +        else if(currentObject == "jet-jet pairs")           setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,jets.product(),jets.product(), "jet-jet pairs");
987 +        else if(currentObject == "jet-secondary jet pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,jets.product(),jets.product(), "jet-secondary jet pairs");
988 +        else if(currentObject == "electron-jet pairs")      setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,electrons.product(),jets.product(), "electron-jet pairs");
989 +        else if(currentObject == "electron-photon pairs")   setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,electrons.product(),photons.product(), "electron-photon pairs");
990 +        else if(currentObject == "photon-jet pairs")        setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,photons.product(),jets.product(), "photon-jet pairs");
991 +        else if(currentObject == "muon-jet pairs")          setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,muons.product(),jets.product(), "muon-jet pairs");
992 +        else if(currentObject == "muon-event pairs")        setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,muons.product(),events.product(), "muon-event pairs");
993 +        else if(currentObject == "met-jet pairs")           setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,mets.product(),jets.product(), "met-jet pairs");
994 +        else if(currentObject == "track-jet pairs")         setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,tracks.product(),jets.product(), "track-jet pairs");
995 +        else if(currentObject == "muon-photon pairs")       setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,muons.product(),photons.product(), "muon-photon pairs");
996 +        else if(currentObject == "track-event pairs")       setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,tracks.product(),events.product(), "track-event pairs");
997 +        else if(currentObject == "electron-track pairs")    setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,electrons.product(),tracks.product(),"electron-track pairs");
998 +        else if(currentObject == "muon-track pairs")        setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,muons.product(),tracks.product(),"muon-track pairs");
999 +        else if(currentObject == "secondary muon-track pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,secMuons.product(),tracks.product(),"secondary muon-track pairs");
1000 +        else if(currentObject == "muon-tau pairs")          setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,muons.product(),taus.product(),"muon-tau pairs");
1001 +        else if(currentObject == "tau-tau pairs")           setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,taus.product(),taus.product(),"tau-tau pairs");
1002 +        else if(currentObject == "tau-track pairs")         setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,taus .product(),tracks.product(),"tau-track pairs");
1003 +        else if(currentObject == "electron-trigobj pairs")  setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,electrons.product(),trigobjs.product(),"electron-trigobj pairs");
1004 +        else if(currentObject == "muon-trigobj pairs")      setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,muons.product(),trigobjs.product(),"muon-trigobj pairs");
1005 +        else if(currentObject == "electron-mcparticle pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,electrons.product(),mcparticles.product(),"electron-mcparticle pairs");
1006  
1007 <        if(currentObject == "jets") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,jets.product(),"jets");
575 <
576 <        else if(currentObject == "muons") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,muons.product(),"muons");
577 <
578 <        else if(currentObject == "secondary muons") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,muons.product(),"secondary muons");
579 <        else if(currentObject == "electrons") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,electrons.product(),"electrons");
580 <        else if(currentObject == "events") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,events.product(),"events");
581 <        else if(currentObject == "taus") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,taus.product(),"taus");
582 <        else if(currentObject == "mets") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,mets.product(),"mets");
583 <        else if(currentObject == "tracks") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,tracks.product(),"tracks");
584 <        else if(currentObject == "genjets") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,genjets.product(),"genjets");
585 <        else if(currentObject == "mcparticles") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,mcparticles.product(),"mcparticles");
586 <        else if(currentObject == "primaryvertexs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,primaryvertexs.product(),"primaryvertexs");
587 <        else if(currentObject == "bxlumis") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,bxlumis.product(),"bxlumis");
588 <        else if(currentObject == "photons") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,photons.product(),"photons");
589 <        else if(currentObject == "superclusters") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,superclusters.product(),"superclusters");
590 <
591 <
592 <        else if(currentObject == "muon-muon pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,muons.product(),muons.product(), \
593 <                                                                   cumulativeFlags.at("muons").at(flagsForPairCutsIndex), \
594 <                                                                   cumulativeFlags.at("muons").at(flagsForPairCutsIndex), \
595 <                                                                   "muon-muon pairs");
596 <
597 <        else if(currentObject == "muon-secondary muon pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,muons.product(),muons.product(), \
598 <                                                                   cumulativeFlags.at("muons").at(flagsForPairCutsIndex), \
599 <                                                                   cumulativeFlags.at("secondary muons").at(flagsForPairCutsIndex), \
600 <                                                                   "muon-secondary muon pairs");
601 <
602 <        else if(currentObject == "electron-electron pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,electrons.product(),electrons.product(), \
603 <                                                                           cumulativeFlags.at("electrons").at(flagsForPairCutsIndex), \
604 <                                                                           cumulativeFlags.at("electrons").at(flagsForPairCutsIndex), \
605 <                                                                           "electron-electron pairs");
606 <        else if(currentObject == "electron-muon pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,electrons.product(),muons.product(), \
607 <                                                                       cumulativeFlags.at("electrons").at(flagsForPairCutsIndex), \
608 <                                                                       cumulativeFlags.at("muons").at(flagsForPairCutsIndex), \
609 <                                                                       "electron-muon pairs");
610 <        else if(currentObject == "track-event pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,tracks.product(),events.product(),
611 <                                                                     cumulativeFlags.at("tracks").at(flagsForPairCutsIndex),
612 <                                                                     cumulativeFlags.at("events").at(flagsForPairCutsIndex),
613 <                                                                     "track-event pairs");
614 <        else if(currentObject == "electron-track pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,electrons.product(),tracks.product(),
615 <                                                                        cumulativeFlags.at("electrons").at(flagsForPairCutsIndex),
616 <                                                                        cumulativeFlags.at("tracks").at(flagsForPairCutsIndex),
617 <                                                                        "electron-track pairs");
618 <        else if(currentObject == "muon-track pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,muons.product(),tracks.product(),
619 <                                                                    cumulativeFlags.at("muons").at(flagsForPairCutsIndex),
620 <                                                                    cumulativeFlags.at("tracks").at(flagsForPairCutsIndex),
621 <                                                                    "muon-track pairs");
622 <        else if(currentObject == "muon-tau pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,muons.product(),taus.product(),
623 <                                                                  cumulativeFlags.at("muons").at(flagsForPairCutsIndex),
624 <                                                                  cumulativeFlags.at("taus").at(flagsForPairCutsIndex),
625 <                                                                  "muon-tau pairs");
626 <        else if(currentObject == "tau-tau pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,taus.product(),taus.product(),
627 <                                                                 cumulativeFlags.at("taus").at(flagsForPairCutsIndex),
628 <                                                                 cumulativeFlags.at("taus").at(flagsForPairCutsIndex),
629 <                                                                 "tau-tau pairs");
630 <        else if(currentObject == "tau-track pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,taus .product(),tracks.product(),
631 <                                                                 cumulativeFlags.at("taus").at(flagsForPairCutsIndex),
632 <                                                                 cumulativeFlags.at("tracks").at(flagsForPairCutsIndex),
633 <                                                                 "tau-track pairs");
634 <        
635 <        
1007 >        if(currentObject == "stops" && datasetType_ == "signalMC") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,stops.product(),"stops");
1008        }
1009  
638
639
1010      }//end loop over all cuts
1011  
1012  
643    //use cumulative flags to apply cuts at event level
1013  
1014 +    //use cumulative flags to apply cuts at event level
1015 +    vector<bool> eventPassedPreviousCuts;    //a vector to store cumulative cut descisions after each cut.
1016      bool eventPassedAllCuts = true;
1017 <
647 <    //apply trigger (true if none were specified)
648 <    eventPassedAllCuts = eventPassedAllCuts && triggerDecision;
649 <
1017 >    eventPassedAllCuts = eventPassedAllCuts && triggerDecision;    //apply trigger (true if none were specified)
1018  
1019      for(uint currentCutIndex = 0; currentCutIndex != currentChannel.cuts.size(); currentCutIndex++){
1020  
1021        //loop over all objects and count how many passed the cumulative selection up to this point
1022        cut currentCut = currentChannel.cuts.at(currentCutIndex);
1023        int numberPassing = 0;
1024 +      int numberPassingPrev = 0;  // number of objects that pass cuts up to the previous one
1025  
1026        for (uint object = 0; object != cumulativeFlags.at(currentCut.inputCollection).at(currentCutIndex).size() ; object++){
1027 <        if(cumulativeFlags.at(currentCut.inputCollection).at(currentCutIndex).at(object)) numberPassing++;
1027 >        if(cumulativeFlags.at(currentCut.inputCollection).at(currentCutIndex).at(object).first) numberPassing++;
1028 >      }
1029 >      bool cutDecision;
1030 >      if (!currentCut.isVeto) {
1031 >        cutDecision = evaluateComparison(numberPassing,currentCut.eventComparativeOperator,currentCut.numberRequired);
1032 >      } else {
1033 >        int prevCutIndex = currentCutIndex - 1;
1034 >        if (prevCutIndex<0) {
1035 >          numberPassingPrev = cumulativeFlags.at(currentCut.inputCollection).at(currentCutIndex).size();  // count all objects in collection if cut is the first
1036 >        } else {
1037 >          for (uint object = 0; object != cumulativeFlags.at(currentCut.inputCollection).at(prevCutIndex).size() ; object++){
1038 >            if (cumulativeFlags.at(currentCut.inputCollection).at(prevCutIndex).at(object).first) {
1039 >              numberPassingPrev++;
1040 >              if (verbose_>1) clog << " object passed previous cut" << endl;  
1041 >            }
1042 >          }  
1043 >        }  
1044 >        int numberFailCut = numberPassingPrev - numberPassing;
1045 >        cutDecision = evaluateComparison(numberFailCut,currentCut.eventComparativeOperator,currentCut.numberRequired);  
1046        }
1047 <      bool cutDecision = evaluateComparison(numberPassing,currentCut.eventComparativeOperator,currentCut.numberRequired);
1047 >
1048        cutFlows_.at(currentChannelIndex)->at (currentCut.name) = cutDecision;
1049        eventPassedAllCuts = eventPassedAllCuts && cutDecision;
1050 +      eventPassedPreviousCuts.push_back(eventPassedAllCuts);
1051 +      if (verbose_>1) clog << " Event passed cuts up to cut index " << currentCutIndex << endl;  
1052  
1053      }
1054 <
1055 <    //     if(datasetType_ != "data") {
1056 <    //       scaleFactor *= muonSFWeight_->at (chosenMuon ()->eta);
1057 <    //       scaleFactor *= electronSFWeight_->at (chosenElectron ()->eta, chosenElectron ()->pt);
1058 <    //     }
1059 <
1054 >    //applying all appropriate scale factors
1055 >    double scaleFactor = masterScaleFactor;
1056 >    muonScaleFactor_ = electronScaleFactor_ = bTagScaleFactor_ = 1.0;
1057 >
1058 >    if(applyLeptonSF_ && datasetType_ != "data"){
1059 >      //only apply SFs if we've cut on this object
1060 >      if(find(objectsToCut.begin(),objectsToCut.end(),"muons") != objectsToCut.end ()){
1061 >        flagPair muonFlags;
1062 >        //get the last valid flags in the flag map
1063 >        for (int i = cumulativeFlags.at("muons").size() - 1; i >= 0; i--){
1064 >          if (cumulativeFlags.at("muons").at(i).size()){
1065 >            muonFlags = cumulativeFlags.at("muons").at(i);
1066 >            break;
1067 >          }
1068 >        }
1069 >        //apply the weight for each of those objects
1070 >        for (uint muonIndex = 0; muonIndex != muonFlags.size(); muonIndex++){
1071 >          if(!muonFlags.at(muonIndex).second) continue;
1072 >          muonScaleFactor_ *= muonSFWeight_->at (muons->at(muonIndex).eta);
1073 >        }
1074 >      }
1075 >      //only apply SFs if we've cut on this object
1076 >      if(find(objectsToCut.begin(),objectsToCut.end(),"electrons") != objectsToCut.end ()){
1077 >        flagPair electronFlags;
1078 >        //get the last valid flags in the flag map
1079 >        for (int i = cumulativeFlags.at("electrons").size() - 1; i >= 0; i--){
1080 >          if (cumulativeFlags.at("electrons").at(i).size()){
1081 >            electronFlags = cumulativeFlags.at("electrons").at(i);
1082 >            break;
1083 >          }
1084 >        }
1085 >        //apply the weight for each of those objects
1086 >        for (uint electronIndex = 0; electronIndex != electronFlags.size(); electronIndex++){
1087 >          if(!electronFlags.at(electronIndex).second) continue;
1088 >          electronScaleFactor_ *= electronSFWeight_->at (electrons->at(electronIndex).eta, electrons->at(electronIndex).pt);
1089 >        }
1090 >      }
1091 >    }
1092 >    if(applyBtagSF_ && datasetType_ != "data"){
1093 >      //only apply SFs if we've cut on this object
1094 >      if(find(objectsToCut.begin(),objectsToCut.end(),"jets") != objectsToCut.end ()){
1095 >        flagPair jetFlags;
1096 >        vector<double> jetSFs;
1097 >        //get the last valid flags in the flag map
1098 >        for (int i = cumulativeFlags.at("jets").size() - 1; i >= 0; i--){
1099 >          if (cumulativeFlags.at("jets").at(i).size()){
1100 >            jetFlags = cumulativeFlags.at("jets").at(i);
1101 >            break;
1102 >          }
1103 >        }
1104 >        //apply the weight for each of those objects
1105 >        for (uint jetIndex = 0; jetIndex != jetFlags.size(); jetIndex++){
1106 >          if(!jetFlags.at(jetIndex).second) continue;
1107 >          double jetSFTmp = bTagSFWeight_->sflookup(jets->at(jetIndex).btagCombinedSecVertex, jets->at(jetIndex).pt, jets->at(jetIndex).flavour, jets->at(jetIndex).eta);
1108 >          jetSFs.push_back(jetSFTmp);
1109 >        }
1110 >        bTagScaleFactor_ *= bTagSFWeight_->weight( jetSFs, minBtag_);
1111 >      }
1112 >    }
1113 >    scaleFactor *= muonScaleFactor_;
1114 >    scaleFactor *= electronScaleFactor_;
1115 >    scaleFactor *= bTagScaleFactor_;
1116      cutFlows_.at(currentChannelIndex)->fillCutFlow(scaleFactor);
1117 +    if (verbose_>1) clog << " Scale factors applied:  "
1118 +                         << " muonScaleFactor_ = " << muonScaleFactor_
1119 +                         << ", electronScaleFactor_ = " << electronScaleFactor_
1120 +                         << ", bTagScaleFactor_ = " << bTagScaleFactor_
1121 +                         << ", total scale factor = " << scaleFactor
1122 +                         << endl;  
1123 +
1124 +
1125 +    if (printEventInfo_ && eventPassedAllCuts) {
1126 +      // Write information about event to screen, for testing purposes.
1127 +      clog << "Event passed all cuts in channel " <<  currentChannel.name
1128 +           << ":  run:lumi:evt=  "  << events->at(0).run
1129 +           << ":" << events->at(0).lumi
1130 +           << ":" << events->at(0).evt
1131 +           << endl;
1132 +      if (findEventsLog) {
1133 +        (*findEventsLog) << events->at(0).run
1134 +                         << ":" << events->at(0).lumi
1135 +                         << ":" << events->at(0).evt << endl;
1136 +      }
1137  
673
674
675    if(!eventPassedAllCuts)continue;
676
677    if (printEventInfo_) {
678      // Write information about event to screen, for testing purposes.  
679      cout << "Event passed all cuts in channel " <<  currentChannel.name
680           << ": run="  << events->at(0).run
681           << "  lumi=" << events->at(0).lumi
682           << "  event=" << events->at(0).evt
683           << endl;  
1138      }
1139  
1140  
1141      //filling histograms
1142 <    for (uint histogramIndex = 0; histogramIndex != histograms.size(); histogramIndex++){
1143 <      histogram currentHistogram = histograms.at(histogramIndex);
1142 >    for(uint currentCut = 0; currentCut != oneDHists_.at(currentChannelIndex).size(); currentCut++){//loop over all the cuts in each channel; if GetPlotsAfterEachCut_ is false, only the last cut will be used.
1143 >
1144 >      if (verbose_>2) clog << "  Filling histograms for currentcut = " << currentCut << endl;  
1145  
1146 <      if(currentHistogram.inputVariables.size() == 1){
1147 <        TH1D* histo;
1148 <        histo = oneDHists_.at(currentChannelIndex).at(currentHistogram.name);
1149 <
695 <        if(currentHistogram.inputCollection == "jets") fill1DHistogram(histo,currentHistogram,jets.product(),cumulativeFlags.at("jets").back(),scaleFactor);
696 <        else if(currentHistogram.inputCollection == "muons") fill1DHistogram(histo,currentHistogram,muons.product(),cumulativeFlags.at("muons").back(),scaleFactor);
697 <        else if(currentHistogram.inputCollection == "secondary muons") fill1DHistogram(histo,currentHistogram,muons.product(),cumulativeFlags.at("secondary muons").back(),scaleFactor);
698 <        else if(currentHistogram.inputCollection == "muon-muon pairs") fill1DHistogram(histo,currentHistogram,muons.product(),muons.product(), \
699 <                                                                                       cumulativeFlags.at("muons").back(),cumulativeFlags.at("muons").back(), \
700 <                                                                                       cumulativeFlags.at("muon-muon pairs").back(),scaleFactor);
701 <        else if(currentHistogram.inputCollection == "muon-secondary muon pairs") fill1DHistogram(histo,currentHistogram,muons.product(),muons.product(), \
702 <                                                                                       cumulativeFlags.at("muons").back(),cumulativeFlags.at("secondary muons").back(), \
703 <                                                                                       cumulativeFlags.at("muon-secondary muon pairs").back(),scaleFactor);
704 <        else if(currentHistogram.inputCollection == "electrons") fill1DHistogram(histo,currentHistogram,electrons.product(),cumulativeFlags.at("electrons").back(),scaleFactor);
705 <        else if(currentHistogram.inputCollection == "electron-electron pairs") fill1DHistogram(histo,currentHistogram,electrons.product(),electrons.product(),\
706 <                                                                                               cumulativeFlags.at("electrons").back(),cumulativeFlags.at("electrons").back(),\
707 <                                                                                               cumulativeFlags.at("electron-electron pairs").back(),scaleFactor);
708 <        else if(currentHistogram.inputCollection == "electron-muon pairs") fill1DHistogram(histo,currentHistogram, electrons.product(),muons.product(), \
709 <                                                                                           cumulativeFlags.at("electrons").back(),cumulativeFlags.at("muons").back(),
710 <                                                                                           cumulativeFlags.at("electron-muon pairs").back(),scaleFactor);
711 <        else if(currentHistogram.inputCollection == "electron-track pairs") fill1DHistogram(histo,currentHistogram, electrons.product(),tracks.product(),        
712 <                                                                                            cumulativeFlags.at("electrons").back(),cumulativeFlags.at("tracks").back(),  
713 <                                                                                            cumulativeFlags.at("electron-track pairs").back(),scaleFactor);      
714 <        else if(currentHistogram.inputCollection == "muon-track pairs") fill1DHistogram(histo,currentHistogram, muons.product(),tracks.product(),        
715 <                                                                                        cumulativeFlags.at("muons").back(),cumulativeFlags.at("tracks").back(),  
716 <                                                                                        cumulativeFlags.at("muon-track pairs").back(),scaleFactor);      
717 <        else if(currentHistogram.inputCollection == "muon-tau pairs") fill1DHistogram(histo,currentHistogram, muons.product(),taus.product(),    
718 <                                                                                      cumulativeFlags.at("muons").back(),cumulativeFlags.at("taus").back(),      
719 <                                                                                      cumulativeFlags.at("muon-tau pairs").back(),scaleFactor);  
720 <        else if(currentHistogram.inputCollection == "tau-tau pairs") fill1DHistogram(histo,currentHistogram, taus.product(),taus.product(),      
721 <                                                                                     cumulativeFlags.at("taus").back(),cumulativeFlags.at("taus").back(),        
722 <                                                                                     cumulativeFlags.at("tau-tau pairs").back(),scaleFactor);    
723 <        else if(currentHistogram.inputCollection == "tau-track pairs") fill1DHistogram(histo,currentHistogram, taus.product(),tracks.product(),
724 <                                                                                     cumulativeFlags.at("taus").back(),cumulativeFlags.at("tracks").back(),
725 <                                                                                     cumulativeFlags.at("tau-track pairs").back(),scaleFactor);
726 <
727 <        else if(currentHistogram.inputCollection == "events") fill1DHistogram(histo,currentHistogram,events.product(),cumulativeFlags.at("events").back(),scaleFactor);
728 <        else if(currentHistogram.inputCollection == "taus") fill1DHistogram(histo,currentHistogram,taus.product(),cumulativeFlags.at("taus").back(),scaleFactor);
729 <        else if(currentHistogram.inputCollection == "mets") fill1DHistogram(histo,currentHistogram,mets.product(),cumulativeFlags.at("mets").back(),scaleFactor);
730 <        else if(currentHistogram.inputCollection == "tracks") fill1DHistogram(histo,currentHistogram,tracks.product(),cumulativeFlags.at("tracks").back(),scaleFactor);
731 <        else if(currentHistogram.inputCollection == "genjets") fill1DHistogram(histo,currentHistogram,genjets.product(),cumulativeFlags.at("genjets").back(),scaleFactor);
732 <        else if(currentHistogram.inputCollection == "mcparticles") fill1DHistogram(histo,currentHistogram,mcparticles.product(),cumulativeFlags.at("mcparticles").back(),scaleFactor);
733 <        else if(currentHistogram.inputCollection == "primaryvertexs") fill1DHistogram(histo,currentHistogram,primaryvertexs.product(),cumulativeFlags.at("primaryvertexs").back(),scaleFactor);
734 <        else if(currentHistogram.inputCollection == "bxlumis") fill1DHistogram(histo,currentHistogram,bxlumis.product(),cumulativeFlags.at("bxlumis").back(),scaleFactor);
735 <        else if(currentHistogram.inputCollection == "photons") fill1DHistogram(histo,currentHistogram,photons.product(),cumulativeFlags.at("photons").back(),scaleFactor);
736 <        else if(currentHistogram.inputCollection == "superclusters") fill1DHistogram(histo,currentHistogram,superclusters.product(),cumulativeFlags.at("superclusters").back(),scaleFactor);
737 <      }
738 <      else if(currentHistogram.inputVariables.size() == 2){
739 <        TH2D* histo;
740 <        histo = twoDHists_.at(currentChannelIndex).at(currentHistogram.name);
741 <
742 <        if(currentHistogram.inputCollection == "jets") fill2DHistogram(histo,currentHistogram,jets.product(),cumulativeFlags.at("jets").back(),scaleFactor);
743 <        else if(currentHistogram.inputCollection == "muons") fill2DHistogram(histo,currentHistogram,muons.product(),cumulativeFlags.at("muons").back(),scaleFactor);
744 <        else if(currentHistogram.inputCollection == "secondary muons") fill2DHistogram(histo,currentHistogram,muons.product(),cumulativeFlags.at("secondary muons").back(),scaleFactor);
745 <        else if(currentHistogram.inputCollection == "muon-muon pairs") fill2DHistogram(histo,currentHistogram,muons.product(),muons.product(), \
746 <                                                                                       cumulativeFlags.at("muons").back(),cumulativeFlags.at("muons").back(), \
747 <                                                                                       cumulativeFlags.at("muon-muon pairs").back(),scaleFactor);
748 <        else if(currentHistogram.inputCollection == "muon-muon pairs") fill2DHistogram(histo,currentHistogram,muons.product(),muons.product(), \
749 <                                                                                       cumulativeFlags.at("muons").back(),cumulativeFlags.at("secondary muons").back(), \
750 <                                                                                       cumulativeFlags.at("muon-secondary muon pairs").back(),scaleFactor);
751 <        else if(currentHistogram.inputCollection == "electrons") fill2DHistogram(histo,currentHistogram,electrons.product(),cumulativeFlags.at("electrons").back(),scaleFactor);
752 <        else if(currentHistogram.inputCollection == "electron-electron pairs") fill2DHistogram(histo,currentHistogram,electrons.product(),electrons.product(), \
753 <                                                                                               cumulativeFlags.at("electrons").back(),cumulativeFlags.at("electrons").back(), \
754 <                                                                                               cumulativeFlags.at("electron-electron pairs").back(),scaleFactor);
755 <        else if(currentHistogram.inputCollection == "electron-muon pairs") fill2DHistogram(histo,currentHistogram,electrons.product(),muons.product(), \
756 <                                                                                           cumulativeFlags.at("electrons").back(),cumulativeFlags.at("muons").back(), \
757 <                                                                                           cumulativeFlags.at("electron-muon pairs").back(),scaleFactor);
758 <        else if(currentHistogram.inputCollection == "electron-track pairs") fill2DHistogram(histo,currentHistogram,electrons.product(),tracks.product(),        
759 <                                                                                            cumulativeFlags.at("electrons").back(),cumulativeFlags.at("tracks").back(),          
760 <                                                                                            cumulativeFlags.at("electron-track pairs").back(),scaleFactor);      
761 <        else if(currentHistogram.inputCollection == "muon-track pairs") fill2DHistogram(histo,currentHistogram,muons.product(),tracks.product(),        
762 <                                                                                        cumulativeFlags.at("muons").back(),cumulativeFlags.at("tracks").back(),          
763 <                                                                                        cumulativeFlags.at("muon-track pairs").back(),scaleFactor);      
764 <        else if(currentHistogram.inputCollection == "muon-tau pairs") fill2DHistogram(histo,currentHistogram,muons.product(),taus.product(),    
765 <                                                                                      cumulativeFlags.at("muons").back(),cumulativeFlags.at("taus").back(),      
766 <                                                                                      cumulativeFlags.at("muon-tau pairs").back(),scaleFactor);  
767 <        else if(currentHistogram.inputCollection == "tau-tau pairs") fill2DHistogram(histo,currentHistogram,taus.product(),taus.product(),      
768 <                                                                                     cumulativeFlags.at("taus").back(),cumulativeFlags.at("taus").back(),        
769 <                                                                                     cumulativeFlags.at("tau-tau pairs").back(),scaleFactor);    
770 <        else if(currentHistogram.inputCollection == "tau-track pairs") fill2DHistogram(histo,currentHistogram,taus.product(),tracks.product(),
771 <                                                                                     cumulativeFlags.at("taus").back(),cumulativeFlags.at("tracks").back(),
772 <                                                                                     cumulativeFlags.at("tau-track pairs").back(),scaleFactor);
773 <        else if(currentHistogram.inputCollection == "events") fill2DHistogram(histo,currentHistogram,events.product(),cumulativeFlags.at("events").back(),scaleFactor);
774 <        else if(currentHistogram.inputCollection == "taus") fill2DHistogram(histo,currentHistogram,taus.product(),cumulativeFlags.at("taus").back(),scaleFactor);
775 <        else if(currentHistogram.inputCollection == "mets") fill2DHistogram(histo,currentHistogram,mets.product(),cumulativeFlags.at("mets").back(),scaleFactor);
776 <        else if(currentHistogram.inputCollection == "tracks") fill2DHistogram(histo,currentHistogram,tracks.product(),cumulativeFlags.at("tracks").back(),scaleFactor);
777 <        else if(currentHistogram.inputCollection == "track-event pairs") fill2DHistogram(histo,currentHistogram,tracks.product(),events.product(),
778 <                                                                                         cumulativeFlags.at("tracks").back(),cumulativeFlags.at("events").back(),
779 <                                                                                         cumulativeFlags.at("track-event pairs").back(),scaleFactor);  
780 <        else if(currentHistogram.inputCollection == "genjets") fill2DHistogram(histo,currentHistogram,genjets.product(),cumulativeFlags.at("genjets").back(),scaleFactor);
781 <        else if(currentHistogram.inputCollection == "mcparticles") fill2DHistogram(histo,currentHistogram,mcparticles.product(),cumulativeFlags.at("mcparticles").back(),scaleFactor);
782 <        else if(currentHistogram.inputCollection == "primaryvertexs") fill2DHistogram(histo,currentHistogram,primaryvertexs.product(),cumulativeFlags.at("primaryvertexs").back(),scaleFactor);
783 <        else if(currentHistogram.inputCollection == "bxlumis") fill2DHistogram(histo,currentHistogram,bxlumis.product(),cumulativeFlags.at("bxlumis").back(),scaleFactor);
784 <        else if(currentHistogram.inputCollection == "photons") fill2DHistogram(histo,currentHistogram,photons.product(),cumulativeFlags.at("photons").back(),scaleFactor);
785 <        else if(currentHistogram.inputCollection == "superclusters") fill2DHistogram(histo,currentHistogram,superclusters.product(),cumulativeFlags.at("superclusters").back(),scaleFactor);
1146 >      uint currentDir;
1147 >      if (!GetPlotsAfterEachCut_) { currentDir =  currentChannel.cuts.size() - oneDHists_.at(currentChannelIndex).size(); } //if GetPlotsAfterEachCut_ is false, set currentDir point to the last cut.
1148 >      else{
1149 >        currentDir = currentCut;
1150        }
787    }
1151  
1152  
1153 +      if(eventPassedPreviousCuts.at(currentDir)){
1154 +
1155 +        for (uint histogramIndex = 0; histogramIndex != histograms.size(); histogramIndex++){
1156 +          histogram currentHistogram = histograms.at(histogramIndex);
1157 +
1158 +          if (cumulativeFlags.count(currentHistogram.inputCollection) == 0) clog << "Error: no flags found for collection:  " << currentHistogram.inputCollection << ", will cause a seg fault" << endl;
1159 +
1160 +          if (verbose_>1) clog << " Filling histogram " << currentHistogram.name << " for collection " << currentHistogram.inputCollection << endl;  
1161 +
1162 +          if(currentHistogram.inputVariables.size() == 1){
1163 +            TH1D* histo;
1164 +            histo = oneDHists_.at(currentChannelIndex).at(currentCut).at(currentHistogram.name);
1165 +            if     (currentHistogram.inputCollection == "jets")            fill1DHistogram(histo,currentHistogram,jets.product(),cumulativeFlags.at("jets").at(currentDir),scaleFactor);
1166 +            else if(currentHistogram.inputCollection == "secondary jets")  fill1DHistogram(histo,currentHistogram,jets.product(),cumulativeFlags.at("secondary jets").at(currentDir),scaleFactor);
1167 +            else if(currentHistogram.inputCollection == "secondary photons")  fill1DHistogram(histo,currentHistogram,photons.product(),cumulativeFlags.at("secondary photons").at(currentDir),scaleFactor);
1168 +            else if(currentHistogram.inputCollection == "muons")           fill1DHistogram(histo,currentHistogram,muons.product(),cumulativeFlags.at("muons").at(currentDir),scaleFactor);
1169 +            else if(currentHistogram.inputCollection == "secondary muons") fill1DHistogram(histo,currentHistogram,secMuons.product(),cumulativeFlags.at("secondary muons").at(currentDir),scaleFactor);
1170 +            else if(currentHistogram.inputCollection == "secondary electrons") fill1DHistogram(histo,currentHistogram,electrons.product(),cumulativeFlags.at("secondary electrons").at(currentDir),scaleFactor);
1171 +            else if(currentHistogram.inputCollection == "muon-muon pairs") fill1DHistogram(histo,currentHistogram,muons.product(),muons.product(),
1172 +                                                                                           cumulativeFlags.at("muon-muon pairs").at(currentDir),scaleFactor);
1173 +            else if(currentHistogram.inputCollection == "muon-secondary muon pairs") fill1DHistogram(histo,currentHistogram,muons.product(),secMuons.product(),
1174 +                                                                                                     cumulativeFlags.at("muon-secondary muon pairs").at(currentDir),scaleFactor);
1175 +             else if(currentHistogram.inputCollection == "muon-secondary photon pairs") fill1DHistogram(histo,currentHistogram,muons.product(),photons.product(),
1176 +                                                                                                     cumulativeFlags.at("muon-secondary photon pairs").at(currentDir),scaleFactor);
1177 +             else if(currentHistogram.inputCollection == "muon-secondary jet pairs") fill1DHistogram(histo,currentHistogram,muons.product(),jets.product(),
1178 +                                                                                                     cumulativeFlags.at("muon-secondary jet pairs").at(currentDir),scaleFactor);
1179 +             else if(currentHistogram.inputCollection == "photon-secondary jet pairs") fill1DHistogram(histo,currentHistogram,photons.product(),jets.product(),
1180 +                                                                                                     cumulativeFlags.at("photon-secondary jet pairs").at(currentDir),scaleFactor);
1181 +             else if(currentHistogram.inputCollection == "electron-secondary jet pairs") fill1DHistogram(histo,currentHistogram,electrons.product(),jets.product(),
1182 +                                                                                                     cumulativeFlags.at("electron-secondary jet pairs").at(currentDir),scaleFactor);
1183 +
1184 +            else if(currentHistogram.inputCollection == "electrons") fill1DHistogram(histo,currentHistogram,electrons.product(),cumulativeFlags.at("electrons").at(currentDir),scaleFactor);
1185 +            else if(currentHistogram.inputCollection == "electron-electron pairs") fill1DHistogram(histo,currentHistogram,electrons.product(),electrons.product(),
1186 +                                                                                                   cumulativeFlags.at("electron-electron pairs").at(currentDir),scaleFactor);
1187 +            else if(currentHistogram.inputCollection == "jet-jet pairs") fill1DHistogram(histo,currentHistogram,jets.product(),jets.product(),
1188 +                                                                                         cumulativeFlags.at("jet-jet pairs").at(currentDir),scaleFactor);
1189 +             else if(currentHistogram.inputCollection == "jet-secondary jet pairs") fill1DHistogram(histo,currentHistogram,jets.product(),jets.product(),
1190 +                                                                                                     cumulativeFlags.at("jet-secondary jet pairs").at(currentDir),scaleFactor);
1191 +
1192 +            else if(currentHistogram.inputCollection == "electron-secondary electron pairs") fill1DHistogram(histo,currentHistogram,electrons.product(),electrons.product(),
1193 +                                                                                                             cumulativeFlags.at("electron-secondary electron pairs").at(currentDir),scaleFactor);
1194 +            else if(currentHistogram.inputCollection == "electron-muon pairs") fill1DHistogram(histo,currentHistogram, electrons.product(),muons.product(),
1195 +                                                                                               cumulativeFlags.at("electron-muon pairs").at(currentDir),scaleFactor);
1196 +            else if(currentHistogram.inputCollection == "electron-jet pairs") fill1DHistogram(histo,currentHistogram, electrons.product(),jets.product(),
1197 +                                                                                              cumulativeFlags.at("electron-jet pairs").at(currentDir),scaleFactor);
1198 +            else if(currentHistogram.inputCollection == "photon-jet pairs") fill1DHistogram(histo,currentHistogram, photons.product(),jets.product(),
1199 +                                                                                              cumulativeFlags.at("photon-jet pairs").at(currentDir),scaleFactor);
1200 +            else if(currentHistogram.inputCollection == "muon-jet pairs") fill1DHistogram(histo,currentHistogram, muons.product(),jets.product(),
1201 +                                                                                          cumulativeFlags.at("muon-jet pairs").at(currentDir),scaleFactor);
1202 +            else if(currentHistogram.inputCollection == "muon-event pairs") fill1DHistogram(histo,currentHistogram, muons.product(),events.product(),
1203 +                                                                                          cumulativeFlags.at("muon-event pairs").at(currentDir),scaleFactor);
1204 +            else if(currentHistogram.inputCollection == "met-jet pairs")  fill1DHistogram(histo,currentHistogram, mets.product(),jets.product(),
1205 +                                                                                          cumulativeFlags.at("met-jet pairs").at(currentDir),scaleFactor);
1206 +            else if(currentHistogram.inputCollection == "track-jet pairs")  fill1DHistogram(histo,currentHistogram,tracks.product(),jets.product(),
1207 +                                                                                          cumulativeFlags.at("track-jet pairs").at(currentDir),scaleFactor);
1208 +            else if(currentHistogram.inputCollection == "muon-photon pairs") fill1DHistogram(histo,currentHistogram, muons.product(),photons.product(),
1209 +                                                                                          cumulativeFlags.at("muon-photon pairs").at(currentDir),scaleFactor);
1210 +            else if(currentHistogram.inputCollection == "electron-photon pairs") fill1DHistogram(histo,currentHistogram, electrons.product(),photons.product(),
1211 +                                                                                          cumulativeFlags.at("electron-photon pairs").at(currentDir),scaleFactor);
1212 +            else if(currentHistogram.inputCollection == "electron-track pairs") fill1DHistogram(histo,currentHistogram, electrons.product(),tracks.product(),
1213 +                                                                                                cumulativeFlags.at("electron-track pairs").at(currentDir),scaleFactor);
1214 +            else if(currentHistogram.inputCollection == "muon-track pairs") fill1DHistogram(histo,currentHistogram, muons.product(),tracks.product(),
1215 +                                                                                            cumulativeFlags.at("muon-track pairs").at(currentDir),scaleFactor);
1216 +            else if(currentHistogram.inputCollection == "secondary muon-track pairs") fill1DHistogram(histo,currentHistogram, secMuons.product(),tracks.product(),
1217 +                                                                                            cumulativeFlags.at("secondary muon-track pairs").at(currentDir),scaleFactor);
1218 +            else if(currentHistogram.inputCollection == "muon-tau pairs") fill1DHistogram(histo,currentHistogram, muons.product(),taus.product(),
1219 +                                                                                          cumulativeFlags.at("muon-tau pairs").at(currentDir),scaleFactor);
1220 +            else if(currentHistogram.inputCollection == "tau-tau pairs") fill1DHistogram(histo,currentHistogram, taus.product(),taus.product(),
1221 +                                                                                         cumulativeFlags.at("tau-tau pairs").at(currentDir),scaleFactor);
1222 +            else if(currentHistogram.inputCollection == "tau-track pairs") fill1DHistogram(histo,currentHistogram, taus.product(),tracks.product(),
1223 +                                                                                           cumulativeFlags.at("tau-track pairs").at(currentDir),scaleFactor);
1224 +            else if(currentHistogram.inputCollection == "electron-trigobj pairs") fill1DHistogram(histo,currentHistogram, electrons.product(),trigobjs.product(),
1225 +                                                                                                  cumulativeFlags.at("electron-trigobj pairs").at(currentDir),scaleFactor);
1226 +            else if(currentHistogram.inputCollection == "muon-trigobj pairs") fill1DHistogram(histo,currentHistogram, muons.product(),trigobjs.product(),
1227 +                                                                                              cumulativeFlags.at("muon-trigobj pairs").at(currentDir),scaleFactor);
1228 +
1229 +            else if(currentHistogram.inputCollection == "events") fill1DHistogram(histo,currentHistogram,events.product(),cumulativeFlags.at("events").at(currentDir),scaleFactor);
1230 +            else if(currentHistogram.inputCollection == "taus") fill1DHistogram(histo,currentHistogram,taus.product(),cumulativeFlags.at("taus").at(currentDir),scaleFactor);
1231 +            else if(currentHistogram.inputCollection == "mets") fill1DHistogram(histo,currentHistogram,mets.product(),cumulativeFlags.at("mets").at(currentDir),scaleFactor);
1232 +            else if(currentHistogram.inputCollection == "tracks") fill1DHistogram(histo,currentHistogram,tracks.product(),cumulativeFlags.at("tracks").at(currentDir),scaleFactor);
1233 +            else if(currentHistogram.inputCollection == "genjets") fill1DHistogram(histo,currentHistogram,genjets.product(),cumulativeFlags.at("genjets").at(currentDir),scaleFactor);
1234 +            else if(currentHistogram.inputCollection == "mcparticles") fill1DHistogram(histo,currentHistogram,mcparticles.product(),cumulativeFlags.at("mcparticles").at(currentDir),scaleFactor);
1235 +            else if(currentHistogram.inputCollection == "primaryvertexs") fill1DHistogram(histo,currentHistogram,primaryvertexs.product(),cumulativeFlags.at("primaryvertexs").at(currentDir),scaleFactor);
1236 +            else if(currentHistogram.inputCollection == "bxlumis") fill1DHistogram(histo,currentHistogram,bxlumis.product(),cumulativeFlags.at("bxlumis").at(currentDir),scaleFactor);
1237 +            else if(currentHistogram.inputCollection == "photons") fill1DHistogram(histo,currentHistogram,photons.product(),cumulativeFlags.at("photons").at(currentDir),scaleFactor);
1238 +            else if(currentHistogram.inputCollection == "superclusters") fill1DHistogram(histo,currentHistogram,superclusters.product(),cumulativeFlags.at("superclusters").at(currentDir),scaleFactor);
1239 +            else if(currentHistogram.inputCollection == "trigobjs") fill1DHistogram(histo,currentHistogram,trigobjs.product(),cumulativeFlags.at("trigobjs").at(currentDir),scaleFactor);
1240 +            else if(currentHistogram.inputCollection == "stops" && datasetType_ == "signalMC") fill1DHistogram(histo,currentHistogram,stops.product(),cumulativeFlags.at("stops").at(currentDir),scaleFactor);
1241 +          }
1242 +          else if(currentHistogram.inputVariables.size() == 2){
1243 +            TH2D* histo;
1244 +            histo = twoDHists_.at(currentChannelIndex).at(currentCut).at(currentHistogram.name);
1245 +            if     (currentHistogram.inputCollection == "jets")            fill2DHistogram(histo,currentHistogram,jets.product(),cumulativeFlags.at("jets").at(currentDir),scaleFactor);
1246 +            else if(currentHistogram.inputCollection == "secondary jets")  fill2DHistogram(histo,currentHistogram,jets.product(),cumulativeFlags.at("secondary jets").at(currentDir),scaleFactor);
1247 +            else if(currentHistogram.inputCollection == "secondary photons")  fill2DHistogram(histo,currentHistogram,photons.product(),cumulativeFlags.at("secondary photons").at(currentDir),scaleFactor);
1248 +            else if(currentHistogram.inputCollection == "muons")           fill2DHistogram(histo,currentHistogram,muons.product(),cumulativeFlags.at("muons").at(currentDir),scaleFactor);
1249 +            else if(currentHistogram.inputCollection == "secondary muons") fill2DHistogram(histo,currentHistogram,secMuons.product(),cumulativeFlags.at("secondary muons").at(currentDir),scaleFactor);
1250 +            else if(currentHistogram.inputCollection == "muon-muon pairs") fill2DHistogram(histo,currentHistogram,muons.product(),muons.product(),
1251 +                                                                                           cumulativeFlags.at("muon-muon pairs").at(currentDir),scaleFactor);
1252 +            else if(currentHistogram.inputCollection == "muon-secondary muon pairs") fill2DHistogram(histo,currentHistogram,muons.product(),secMuons.product(),
1253 +                                                                                                     cumulativeFlags.at("muon-secondary muon pairs").at(currentDir),scaleFactor);
1254 +            else if(currentHistogram.inputCollection == "muon-secondary photon pairs") fill2DHistogram(histo,currentHistogram,muons.product(),photons.product(),
1255 +                                                                                                     cumulativeFlags.at("muon-secondary photon pairs").at(currentDir),scaleFactor);
1256 +            else if(currentHistogram.inputCollection == "muon-secondary jet pairs") fill2DHistogram(histo,currentHistogram,muons.product(),jets.product(),
1257 +                                                                                                     cumulativeFlags.at("muon-secondary jet pairs").at(currentDir),scaleFactor);
1258 +            else if(currentHistogram.inputCollection == "electron-secondary jet pairs") fill2DHistogram(histo,currentHistogram,electrons.product(),jets.product(),
1259 +                                                                                                     cumulativeFlags.at("electron-secondary jet pairs").at(currentDir),scaleFactor);
1260 +            else if(currentHistogram.inputCollection == "photon-secondary jet pairs") fill2DHistogram(histo,currentHistogram,photons.product(),jets.product(),
1261 +                                                                                                     cumulativeFlags.at("photon-secondary jet pairs").at(currentDir),scaleFactor);
1262 +            else if(currentHistogram.inputCollection == "electrons") fill2DHistogram(histo,currentHistogram,electrons.product(),cumulativeFlags.at("electrons").at(currentDir),scaleFactor);
1263 +            else if(currentHistogram.inputCollection == "secondary electrons") fill2DHistogram(histo,currentHistogram,electrons.product(),cumulativeFlags.at("secondary electrons").at(currentDir),scaleFactor);
1264 +            else if(currentHistogram.inputCollection == "electron-electron pairs") fill2DHistogram(histo,currentHistogram,electrons.product(),electrons.product(),
1265 +                                                                                                   cumulativeFlags.at("electron-electron pairs").at(currentDir),scaleFactor);
1266 +            else if(currentHistogram.inputCollection == "jet-jet pairs") fill2DHistogram(histo,currentHistogram,jets.product(),jets.product(),
1267 +                                                                                         cumulativeFlags.at("jet-jet pairs").at(currentDir),scaleFactor);
1268 +            else if(currentHistogram.inputCollection == "electron-secondary electron pairs") fill2DHistogram(histo,currentHistogram,electrons.product(),electrons.product(),
1269 +                                                                                                             cumulativeFlags.at("electron-secondary electron pairs").at(currentDir),scaleFactor);
1270 +            else if(currentHistogram.inputCollection == "electron-muon pairs") fill2DHistogram(histo,currentHistogram,electrons.product(),muons.product(),
1271 +                                                                                               cumulativeFlags.at("electron-muon pairs").at(currentDir),scaleFactor);
1272 +            else if(currentHistogram.inputCollection == "electron-jet pairs") fill2DHistogram(histo,currentHistogram,electrons.product(),jets.product(),
1273 +                                                                                              cumulativeFlags.at("electron-jet pairs").at(currentDir),scaleFactor);
1274 +            else if(currentHistogram.inputCollection == "electron-photon pairs") fill2DHistogram(histo,currentHistogram,electrons.product(),photons.product(),
1275 +                                                                                              cumulativeFlags.at("electron-photon pairs").at(currentDir),scaleFactor);
1276 +            else if(currentHistogram.inputCollection == "muon-jet pairs") fill2DHistogram(histo,currentHistogram,muons.product(),jets.product(),
1277 +                                                                                          cumulativeFlags.at("muon-jet pairs").at(currentDir),scaleFactor);
1278 +            else if(currentHistogram.inputCollection == "muon-event pairs") fill2DHistogram(histo,currentHistogram,muons.product(),events.product(),
1279 +                                                                                          cumulativeFlags.at("muon-event pairs").at(currentDir),scaleFactor);
1280 +            else if(currentHistogram.inputCollection == "met-jet pairs") fill2DHistogram(histo,currentHistogram,mets.product(),jets.product(),
1281 +                                                                                         cumulativeFlags.at("met-jet pairs").at(currentDir),scaleFactor);
1282 +            else if(currentHistogram.inputCollection == "track-jet pairs") fill2DHistogram(histo,currentHistogram,tracks.product(),jets.product(),
1283 +                                                                                         cumulativeFlags.at("track-jet pairs").at(currentDir),scaleFactor);
1284 +            else if(currentHistogram.inputCollection == "photon-jet pairs") fill2DHistogram(histo,currentHistogram,photons.product(),jets.product(),
1285 +                                                                                          cumulativeFlags.at("photon-jet pairs").at(currentDir),scaleFactor);
1286 +            else if(currentHistogram.inputCollection == "muon-photon pairs") fill2DHistogram(histo,currentHistogram,muons.product(),photons.product(),
1287 +                                                                                          cumulativeFlags.at("muon-photon pairs").at(currentDir),scaleFactor);
1288 +            else if(currentHistogram.inputCollection == "electron-track pairs") fill2DHistogram(histo,currentHistogram,electrons.product(),tracks.product(),
1289 +                                                                                                cumulativeFlags.at("electron-track pairs").at(currentDir),scaleFactor);
1290 +            else if(currentHistogram.inputCollection == "muon-track pairs") fill2DHistogram(histo,currentHistogram,muons.product(),tracks.product(),
1291 +                                                                                            cumulativeFlags.at("muon-track pairs").at(currentDir),scaleFactor);
1292 +            else if(currentHistogram.inputCollection == "secondary muon-track pairs") fill2DHistogram(histo,currentHistogram,secMuons.product(),tracks.product(),
1293 +                                                                                            cumulativeFlags.at("muon-track pairs").at(currentDir),scaleFactor);
1294 +            else if(currentHistogram.inputCollection == "muon-tau pairs") fill2DHistogram(histo,currentHistogram,muons.product(),taus.product(),
1295 +                                                                                          cumulativeFlags.at("muon-tau pairs").at(currentDir),scaleFactor);
1296 +            else if(currentHistogram.inputCollection == "tau-tau pairs") fill2DHistogram(histo,currentHistogram,taus.product(),taus.product(),
1297 +                                                                                         cumulativeFlags.at("tau-tau pairs").at(currentDir),scaleFactor);
1298 +            else if(currentHistogram.inputCollection == "tau-track pairs") fill2DHistogram(histo,currentHistogram,taus.product(),tracks.product(),
1299 +                                                                                           cumulativeFlags.at("tau-track pairs").at(currentDir),scaleFactor);
1300 +            else if(currentHistogram.inputCollection == "electron-trigobj pairs") fill2DHistogram(histo,currentHistogram,electrons.product(),trigobjs.product(),
1301 +                                                                                                  cumulativeFlags.at("electron-trigobj pairs").at(currentDir),scaleFactor);
1302 +            else if(currentHistogram.inputCollection == "muon-trigobj pairs") fill2DHistogram(histo,currentHistogram,muons.product(),trigobjs.product(),
1303 +                                                                                              cumulativeFlags.at("muon-trigobj pairs").at(currentDir),scaleFactor);
1304 +            else if(currentHistogram.inputCollection == "events") fill2DHistogram(histo,currentHistogram,events.product(),cumulativeFlags.at("events").at(currentDir),scaleFactor);
1305 +            else if(currentHistogram.inputCollection == "taus") fill2DHistogram(histo,currentHistogram,taus.product(),cumulativeFlags.at("taus").at(currentDir),scaleFactor);
1306 +            else if(currentHistogram.inputCollection == "mets") fill2DHistogram(histo,currentHistogram,mets.product(),cumulativeFlags.at("mets").at(currentDir),scaleFactor);
1307 +            else if(currentHistogram.inputCollection == "tracks") fill2DHistogram(histo,currentHistogram,tracks.product(),cumulativeFlags.at("tracks").at(currentDir),scaleFactor);
1308 +            else if(currentHistogram.inputCollection == "track-event pairs") fill2DHistogram(histo,currentHistogram,tracks.product(),events.product(),
1309 +                                                                                             cumulativeFlags.at("track-event pairs").at(currentDir),scaleFactor);
1310 +            else if(currentHistogram.inputCollection == "genjets") fill2DHistogram(histo,currentHistogram,genjets.product(),cumulativeFlags.at("genjets").at(currentDir),scaleFactor);
1311 +            else if(currentHistogram.inputCollection == "mcparticles") fill2DHistogram(histo,currentHistogram,mcparticles.product(),cumulativeFlags.at("mcparticles").at(currentDir),scaleFactor);
1312 +            else if(currentHistogram.inputCollection == "primaryvertexs") fill2DHistogram(histo,currentHistogram,primaryvertexs.product(),cumulativeFlags.at("primaryvertexs").at(currentDir),scaleFactor);
1313 +            else if(currentHistogram.inputCollection == "bxlumis") fill2DHistogram(histo,currentHistogram,bxlumis.product(),cumulativeFlags.at("bxlumis").at(currentDir),scaleFactor);
1314 +            else if(currentHistogram.inputCollection == "photons") fill2DHistogram(histo,currentHistogram,photons.product(),cumulativeFlags.at("photons").at(currentDir),scaleFactor);
1315 +            else if(currentHistogram.inputCollection == "superclusters") fill2DHistogram(histo,currentHistogram,superclusters.product(),cumulativeFlags.at("superclusters").at(currentDir),scaleFactor);
1316 +            else if(currentHistogram.inputCollection == "trigobjs") fill2DHistogram(histo,currentHistogram,trigobjs.product(),cumulativeFlags.at("trigobjs").at(currentDir),scaleFactor);
1317 +            else if(currentHistogram.inputCollection == "stops" && datasetType_ == "signalMC") fill2DHistogram(histo,currentHistogram,stops.product(),cumulativeFlags.at("stops").at(currentDir),scaleFactor);
1318 +          }
1319  
791    //fills histograms with the sizes of collections
792    for (uint currentObjectIndex = 0; currentObjectIndex != objectsToPlot.size(); currentObjectIndex++){
793
794      string currentObject = objectsToPlot.at(currentObjectIndex);
795
796      string objectToPlot = "";  
797
798      // Name of objectToPlot here must match the name specified in OSUAnalysis::OSUAnalysis().  
799      if(currentObject == "muon-muon pairs") objectToPlot = "dimuonPairs";
800      else if(currentObject == "electron-electron pairs") objectToPlot = "dielectronPairs";
801      else if(currentObject == "electron-muon pairs")     objectToPlot = "electronMuonPairs";
802      else if(currentObject == "electron-track pairs")    objectToPlot = "electronTrackPairs";
803      else if(currentObject == "muon-track pairs")        objectToPlot = "muonTrackPairs";      
804      else if(currentObject == "muon-tau pairs")          objectToPlot = "muonTauPairs";        
805      else if(currentObject == "tau-tau pairs")           objectToPlot = "ditauPairs";
806      else if(currentObject == "tau-track pairs")         objectToPlot = "tauTrackPairs";
807      else if(currentObject == "track-event pairs")       objectToPlot = "trackEventPairs";  
808      else if(currentObject == "muon-secondary muon pairs")       objectToPlot = "muonSecondaryMuonPairs";  
809      else if(currentObject == "secondary muons")         objectToPlot = "secondaryMuons";  
810      else objectToPlot = currentObject;
811
812      string tempCurrentObject = objectToPlot;
813      tempCurrentObject.at(0) = toupper(tempCurrentObject.at(0));  
814      string histoName = "num" + tempCurrentObject;
815
816      //set position of primary vertex in event, in order to calculate quantities relative to it
817      if(std::find(objectsToCut.begin(), objectsToCut.end(), currentObject) != objectsToCut.end()) {
818        vector<bool> lastCutFlags = cumulativeFlags.at(currentObject).back();
819        int numToPlot = 0;
820        for (uint currentFlag = 0; currentFlag != lastCutFlags.size(); currentFlag++){
821          if(lastCutFlags.at(currentFlag)) numToPlot++;
822        }
823        if(objectToPlot == "primaryvertexs"){
824          oneDHists_.at(currentChannelIndex).at(histoName+"BeforePileupCorrection")->Fill(primaryvertexs->size());
825          oneDHists_.at(currentChannelIndex).at(histoName+"AfterPileupCorrection")->Fill(primaryvertexs->size(),scaleFactor);
1320          }
827        else {
828          oneDHists_.at(currentChannelIndex).at(histoName)->Fill(numToPlot,scaleFactor);
829        }
830      }
831      else if(objectToPlot == "jets") oneDHists_.at(currentChannelIndex).at(histoName)->Fill(jets->size(),scaleFactor);
832      else if(objectToPlot == "muons") oneDHists_.at(currentChannelIndex).at(histoName)->Fill(muons->size(),scaleFactor);
833      else if(objectToPlot == "secondaryMuons") oneDHists_.at(currentChannelIndex).at(histoName)->Fill(muons->size(),scaleFactor);
834      else if(objectToPlot == "dimuonPairs") oneDHists_.at(currentChannelIndex).at(histoName)->Fill(muons->size()*(muons->size()-1)/2,scaleFactor);
835      else if(objectToPlot == "muonSecondaryMuonPairs") oneDHists_.at(currentChannelIndex).at(histoName)->Fill(muons->size()*(muons->size()-1)/2,scaleFactor);
836      else if(objectToPlot == "electrons") oneDHists_.at(currentChannelIndex).at(histoName)->Fill(electrons->size(),scaleFactor);
837      else if(objectToPlot == "dielectronPairs") oneDHists_.at(currentChannelIndex).at(histoName)->Fill(electrons->size()*(electrons->size()-1)/2,scaleFactor);
838      else if(objectToPlot == "electronMuonPairs") oneDHists_.at(currentChannelIndex).at(histoName)->Fill(electrons->size()*muons->size(),scaleFactor);
839      else if(objectToPlot == "electronTrackPairs") oneDHists_.at(currentChannelIndex).at(histoName)->Fill(electrons->size()*tracks->size(),scaleFactor);
840      else if(objectToPlot == "events") oneDHists_.at(currentChannelIndex).at(histoName)->Fill(events->size(),scaleFactor);
841      else if(objectToPlot == "taus") oneDHists_.at(currentChannelIndex).at(histoName)->Fill(taus->size(),scaleFactor);
842      else if(objectToPlot == "mets") oneDHists_.at(currentChannelIndex).at(histoName)->Fill(mets->size(),scaleFactor);
843      else if(objectToPlot == "tracks") oneDHists_.at(currentChannelIndex).at(histoName)->Fill(tracks->size(),scaleFactor);
844      else if(objectToPlot == "genjets") oneDHists_.at(currentChannelIndex).at(histoName)->Fill(genjets->size(),scaleFactor);
845      else if(objectToPlot == "mcparticles") oneDHists_.at(currentChannelIndex).at(histoName)->Fill(mcparticles->size(),scaleFactor);
846      else if(objectToPlot == "bxlumis") oneDHists_.at(currentChannelIndex).at(histoName)->Fill(bxlumis->size(),scaleFactor);
847      else if(objectToPlot == "photons") oneDHists_.at(currentChannelIndex).at(histoName)->Fill(photons->size(),scaleFactor);
848      else if(objectToPlot == "superclusters") oneDHists_.at(currentChannelIndex).at(histoName)->Fill(superclusters->size(),scaleFactor);
849      else if(objectToPlot == "primaryvertexs"){
850        oneDHists_.at(currentChannelIndex).at(histoName+"BeforePileupCorrection")->Fill(primaryvertexs->size());
851        oneDHists_.at(currentChannelIndex).at(histoName+"AfterPileupCorrection")->Fill(primaryvertexs->size(),scaleFactor);
852      }
1321  
854    } // end for (uint currentObjectIndex = 0; currentObjectIndex != objectsToPlot.size(); currentObjectIndex++){
1322  
1323 <  } //end loop over channel
1323 >        //fills histograms with the sizes of collections
1324 >        for (uint currentObjectIndex = 0; currentObjectIndex != objectsToPlot.size(); currentObjectIndex++){
1325 >
1326 >          string currentObject = objectsToPlot.at(currentObjectIndex);
1327 >          string objectToPlot = "";
1328 >
1329 >          if (verbose_) clog << "Filling histogram of number of selected objects in collection: " << currentObject << endl;  
1330 >
1331 >          // Name of objectToPlot here must match the name specified in OSUAnalysis::OSUAnalysis().
1332 >          if(currentObject == "muon-muon pairs")                         objectToPlot = "dimuonPairs";
1333 >          else if(currentObject == "electron-electron pairs")            objectToPlot = "dielectronPairs";
1334 >          else if(currentObject == "electron-muon pairs")                objectToPlot = "electronMuonPairs";
1335 >          else if(currentObject == "electron-photon pairs")              objectToPlot = "electronPhotonPairs";
1336 >          else if(currentObject == "electron-jet pairs")                 objectToPlot = "electronJetPairs";
1337 >          else if(currentObject == "muon-jet pairs")                     objectToPlot = "muonJetPairs";
1338 >          else if(currentObject == "muon-event pairs")                   objectToPlot = "muonEventPairs";
1339 >          else if(currentObject == "muon-photon pairs")                  objectToPlot = "muonPhotonPairs";
1340 >          else if(currentObject == "photon-jet pairs")                   objectToPlot = "photonJetPairs";
1341 >          else if(currentObject == "met-jet pairs")                      objectToPlot = "metJetPairs";
1342 >          else if(currentObject == "track-jet pairs")                    objectToPlot = "trackJetPairs";
1343 >          else if(currentObject == "jet-jet pairs")                      objectToPlot = "dijetPairs";
1344 >          else if(currentObject == "jet-secondary jet pairs")            objectToPlot = "jetSecondaryJetPairs";
1345 >          else if(currentObject == "secondary jets")                     objectToPlot = "secondaryJets";
1346 >          else if(currentObject == "secondary photons")                  objectToPlot = "secondaryPhotons";
1347 >          else if(currentObject == "electron-track pairs")               objectToPlot = "electronTrackPairs";
1348 >          else if(currentObject == "muon-track pairs")                   objectToPlot = "muonTrackPairs";
1349 >          else if(currentObject == "secondary muon-track pairs")         objectToPlot = "secondaryMuonTrackPairs";
1350 >          else if(currentObject == "muon-tau pairs")                     objectToPlot = "muonTauPairs";
1351 >          else if(currentObject == "tau-tau pairs")                      objectToPlot = "ditauPairs";
1352 >          else if(currentObject == "tau-track pairs")                    objectToPlot = "tauTrackPairs";
1353 >          else if(currentObject == "track-event pairs")                  objectToPlot = "trackEventPairs";
1354 >          else if(currentObject == "muon-secondary muon pairs")          objectToPlot = "muonSecondaryMuonPairs";
1355 >          else if(currentObject == "secondary muons")                    objectToPlot = "secondaryMuons";
1356 >          else if(currentObject == "muon-secondary jet pairs")           objectToPlot = "muonSecondaryJetPairs";
1357 >          else if(currentObject == "muon-secondary photon pairs")        objectToPlot = "muonSecondaryJetPairs";
1358 >          else if(currentObject == "electron-secondary jet pairs")       objectToPlot = "electronSecondaryJetPairs";
1359 >          else if(currentObject == "photon-secondary jet pairs")         objectToPlot = "photonSecondaryJetPairs";
1360 >          else if(currentObject == "electron-secondary electron pairs")  objectToPlot = "electronSecondaryElectronPairs";
1361 >          else if(currentObject == "secondary electrons")                objectToPlot = "secondaryElectrons";
1362 >          else if(currentObject == "electron-trigobj pairs")             objectToPlot = "electronTrigobjPairs";
1363 >          else if(currentObject == "muon-trigobj pairs")                 objectToPlot = "muonTrigobjPairs";
1364 >          else if(currentObject == "electron-mcparticle pairs")          objectToPlot = "electronMCparticlePairs";
1365 >          else objectToPlot = currentObject;
1366 >
1367 >          string tempCurrentObject = objectToPlot;
1368 >          tempCurrentObject.at(0) = toupper(tempCurrentObject.at(0));
1369 >          string histoName = "num" + tempCurrentObject;
1370 >
1371 >
1372 >          if(find(objectsToPlot.begin(), objectsToPlot.end(), currentObject) != objectsToPlot.end()) {
1373 >            flagPair lastCutFlags = cumulativeFlags.at(currentObject).at(currentDir);
1374 >            int numToPlot = 0;
1375 >            for (uint iObj = 0; iObj != lastCutFlags.size(); iObj++){  // loop over all the objects  
1376 >              if(lastCutFlags.at(iObj).second) {
1377 >                numToPlot++;  
1378 >                if (verbose_>3) clog << "   Found object " << iObj << " in collection " << currentObject << " to plot." << endl;
1379 >              }
1380 >            }
1381 >
1382 >            if(objectToPlot == "primaryvertexs"){
1383 >              oneDHists_.at(currentChannelIndex).at(currentCut).at(histoName+"BeforePileupCorrection")->Fill(primaryvertexs->size());
1384 >              oneDHists_.at(currentChannelIndex).at(currentCut).at(histoName+"AfterPileupCorrection")->Fill(primaryvertexs->size(),scaleFactor);
1385 >            }
1386 >            else {
1387 >              if (printEventInfo_) clog << "Number of selected " << objectToPlot << " to plot:  " << numToPlot << endl;  
1388 >              oneDHists_.at(currentChannelIndex).at(currentCut).at(histoName)->Fill(numToPlot,scaleFactor);
1389 >            }
1390 >          }
1391 >
1392 >        } // end for (uint currentObjectIndex = 0; currentObjectIndex != objectsToPlot.size(); currentObjectIndex++)
1393 >
1394  
1395 <  masterCutFlow_->fillCutFlow(scaleFactor);
1395 >      } // end if(eventPassedPreviousCuts.at(currentDir))
1396 >    } // end loop over cuts
1397  
1398 < } // end void OSUAnalysis::analyze (const edm::Event &event, const edm::EventSetup &setup)
1398 >    if (!useEDMFormat_ && eventPassedAllCuts){
1399 >      // Assign BNTree variables
1400 >      for (uint iBranch = 0; iBranch != treeBranches_.size(); iBranch++) {
1401 >        BranchSpecs brSpecs = treeBranches_.at(iBranch);
1402 >        string coll = brSpecs.inputCollection;
1403 >        if (cumulativeFlags.count(coll) == 0) clog << "Error: no flags found for collection:  " << coll << ", will cause a seg fault" << endl;
1404 >
1405 >        if     (coll == "jets")                assignTreeBranch(brSpecs,jets.product(),          cumulativeFlags.at(coll).back());
1406 >        else if(coll == "secondary jets")      assignTreeBranch(brSpecs,jets.product(),          cumulativeFlags.at(coll).back());
1407 >        else if(coll == "secondary photons")   assignTreeBranch(brSpecs,photons.product(),       cumulativeFlags.at(coll).back());
1408 >        else if(coll == "muons")               assignTreeBranch(brSpecs,muons.product(),         cumulativeFlags.at(coll).back());
1409 >        else if(coll == "secondary muons")     assignTreeBranch(brSpecs,secMuons.product(),      cumulativeFlags.at(coll).back());
1410 >        else if(coll == "electrons")           assignTreeBranch(brSpecs,electrons.product(),     cumulativeFlags.at(coll).back());
1411 >        else if(coll == "secondary electrons") assignTreeBranch(brSpecs,electrons.product(),     cumulativeFlags.at(coll).back());
1412 >        else if(coll == "events")              assignTreeBranch(brSpecs,events.product(),        cumulativeFlags.at(coll).back());
1413 >        else if(coll == "taus")                assignTreeBranch(brSpecs,taus.product(),          cumulativeFlags.at(coll).back());
1414 >        else if(coll == "mets")                assignTreeBranch(brSpecs,mets.product(),          cumulativeFlags.at(coll).back());
1415 >        else if(coll == "tracks")              assignTreeBranch(brSpecs,tracks.product(),        cumulativeFlags.at(coll).back());
1416 >        else if(coll == "genjets")             assignTreeBranch(brSpecs,genjets.product(),       cumulativeFlags.at(coll).back());
1417 >        else if(coll == "mcparticles")         assignTreeBranch(brSpecs,mcparticles.product(),   cumulativeFlags.at(coll).back());
1418 >        else if(coll == "primaryvertexs")      assignTreeBranch(brSpecs,primaryvertexs.product(),cumulativeFlags.at(coll).back());
1419 >        else if(coll == "bxlumis")             assignTreeBranch(brSpecs,bxlumis.product(),       cumulativeFlags.at(coll).back());
1420 >        else if(coll == "photons")             assignTreeBranch(brSpecs,photons.product(),       cumulativeFlags.at(coll).back());
1421 >        else if(coll == "superclusters")       assignTreeBranch(brSpecs,superclusters.product(), cumulativeFlags.at(coll).back());
1422 >        else if(coll == "trigobjs")            assignTreeBranch(brSpecs,trigobjs.product(),      cumulativeFlags.at(coll).back());
1423 >        else if(coll == "stops"
1424 >                && datasetType_ == "signalMC") assignTreeBranch(brSpecs,stops.product(),         cumulativeFlags.at(coll).back());
1425 >      } // end loop over branches
1426 >      // set the evtLong, runInt, and lumiInt variables separately, since they are not type float  
1427 >      BNTreeBranchVals_evtLong_ = events->at(0).evt;
1428 >      BNTreeBranchVals_runInt_  = events->at(0).run;
1429 >      BNTreeBranchVals_lumiInt_ = events->at(0).lumi;
1430 >
1431 >      if (!BNTrees_.at(currentChannelIndex)) { clog << "ERROR:  Undefined BNTree.  Will likely seg fault." << endl; }
1432 >      BNTrees_.at(currentChannelIndex)->Fill();  // only fill if event has passed cuts
1433 >    }
1434 >
1435 >    (*channelDecisions)[currentChannel.name] = eventPassedAllCuts;
1436 >
1437 >  } // end loop over channel
1438 >
1439 >  masterCutFlow_->fillCutFlow(masterScaleFactor);
1440 >
1441 >  event.put (channelDecisions, "channelDecisions");
1442 >
1443 >  isFirstEvent_ = false;  
1444 >
1445 >  if (verbose_) clog << "Finished OSUAnalysis::produce." << endl;  
1446 >
1447 > } // end void OSUAnalysis::produce (const edm::Event &event, const edm::EventSetup &setup)
1448  
1449  
1450  
# Line 872 | Line 1459 | OSUAnalysis::evaluateComparison (double
1459    else if(comparison == "==") return testValue == cutValue;
1460    else if(comparison == "=") return testValue == cutValue;
1461    else if(comparison == "!=") return testValue != cutValue;
1462 <  else {std::cout << "WARNING: invalid comparison operator '" << comparison << "'\n"; return false;}
1462 >  else {clog << "WARNING: invalid comparison operator '" << comparison << "'\n"; return false;}
1463 >
1464 > }
1465 >
1466 > bool
1467 > OSUAnalysis::evaluateComparison (string testValue, string comparison, string cutValue){
1468 >
1469 >
1470 >  if(comparison == ">")       return testValue >  cutValue;
1471 >  else if(comparison == ">=") return testValue >= cutValue;
1472 >  else if(comparison == "<")  return testValue <  cutValue;
1473 >  else if(comparison == "<=") return testValue <= cutValue;
1474 >  else if(comparison == "==") return testValue == cutValue;
1475 >  else if(comparison == "=")  return testValue == cutValue;
1476 >  else if(comparison == "!=") return testValue != cutValue;
1477 >  else {clog << "WARNING: invalid comparison operator '" << comparison << "'\n"; return false;}
1478  
1479   }
1480  
1481   bool
1482 < OSUAnalysis::evaluateTriggers (vector<string> triggersToTest, const BNtriggerCollection* triggerCollection){
1482 > OSUAnalysis::evaluateTriggers (vector<string> triggersToTest, vector<string> triggersToVeto, const BNtriggerCollection* triggerCollection){
1483  
1484 +  //initialize to false until a chosen trigger is passed
1485    bool triggerDecision = false;
1486  
1487 <  for (BNtriggerCollection::const_iterator trigger = triggerCollection->begin (); trigger != triggerCollection->end (); trigger++)
1488 <    {
1489 <      if(trigger->pass != 1) continue;
1490 <      for(uint triggerName = 0; triggerName != triggersToTest.size(); triggerName++)
1491 <        {
1492 <          if(trigger->name.find(triggersToTest.at(triggerName))!=std::string::npos){
1493 <            triggerDecision = true;
1494 <          }
1495 <        }
1487 >  if (printAllTriggers_) clog << "Printing list of all available triggers (which this event may or may not pass):" << endl;
1488 >  //loop over all triggers defined in the event
1489 >  for (BNtriggerCollection::const_iterator trigger = triggerCollection->begin (); trigger != triggerCollection->end (); trigger++){
1490 >
1491 >    if (printAllTriggers_) clog << "   " << trigger->name << endl;
1492 >
1493 >    //we're only interested in triggers that actually passed
1494 >    if(trigger->pass != 1) continue;
1495 >
1496 >    //if the event passes one of the veto triggers, exit and return false
1497 >    for(uint triggerName = 0; triggerName != triggersToVeto.size(); triggerName++){
1498 >      if(trigger->name.find(triggersToVeto.at(triggerName))!=string::npos) return false;
1499      }
1500 <  return triggerDecision;
1500 >    //if the event passes one of the chosen triggers, set triggerDecision to true
1501 >    for(uint triggerName = 0; triggerName != triggersToTest.size(); triggerName++){
1502 >      if(trigger->name.find(triggersToTest.at(triggerName))!=string::npos) triggerDecision = true;
1503 >    }
1504 >  }
1505  
1506 +  printAllTriggers_ = false;  // only print triggers once, not every event
1507 +
1508 +  //if none of the veto triggers fired:
1509 +  //return the OR of all the chosen triggers
1510 +  if (triggersToTest.size() != 0) return triggerDecision;
1511 +  //or if no triggers were defined return true
1512 +  else return true;
1513   }
1514  
1515 < std::vector<std::string>
1515 >
1516 > vector<string>
1517   OSUAnalysis::splitString (string inputString){
1518  
1519 <  std::stringstream stringStream(inputString);
1520 <  std::istream_iterator<std::string> begin(stringStream);
1521 <  std::istream_iterator<std::string> end;
1522 <  std::vector<std::string> stringVector(begin, end);
1519 >  stringstream stringStream(inputString);
1520 >  istream_iterator<string> begin(stringStream);
1521 >  istream_iterator<string> end;
1522 >  vector<string> stringVector(begin, end);
1523    return stringVector;
1524  
1525   }
1526  
1527  
1528   void OSUAnalysis::getTwoObjs(string tempInputCollection, string& obj1, string& obj2) {
1529 <  // Set two object strings from the tempInputCollection string,
1530 <  // For example, if tempInputCollection is "electron-muon pairs",
1531 <  // then obj1 = "electrons" and obj2 = "muons".  
1532 <  // Note that the objects have an "s" appended.  
1529 >  // Set two object strings from the tempInputCollection string,
1530 >  // For example, if tempInputCollection is "electron-muon pairs",
1531 >  // then obj1 = "electrons" and obj2 = "muons".
1532 >  // Note that the objects have an "s" appended.
1533  
1534    int dashIndex = tempInputCollection.find("-");
1535    int spaceIndex = tempInputCollection.find_last_of(" ");
1536    int secondWordLength = spaceIndex - dashIndex;
1537 <  obj1 = tempInputCollection.substr(0,dashIndex) + "s";  
1537 >  obj1 = tempInputCollection.substr(0,dashIndex) + "s";
1538    obj2 = tempInputCollection.substr(dashIndex+1,secondWordLength-1)+"s";
1539 <  
1540 < }
1539 >
1540 > }
1541  
1542  
1543   string OSUAnalysis::getObjToGet(string obj) {
1544    // Return the string corresponding to the object to get for the given obj string.
1545 <  // Right now this only handles the case in which obj contains "secondary",
1546 <  // e.g, "secondary muons".  
1547 <  // Note that "s" is NOT appended.  
930 <  
931 <  if (obj.find("secondary")==std::string::npos) return obj;  // "secondary" is not found  
932 <  int firstSpaceIndex = obj.find_first_of(" ");  
933 <  return obj.substr(firstSpaceIndex+1,obj.length()-1);
1545 >  // Right now this only handles the case in which obj contains "secondary",
1546 >  // e.g, "secondary muons".
1547 >  // Note that "s" is NOT appended.
1548  
1549 < }  
1549 >  if (obj.find("secondary")==string::npos) return obj;  // "secondary" is not found
1550 >  int firstSpaceIndex = obj.find_first_of(" ");
1551 >  return obj.substr(firstSpaceIndex+1,obj.length()-1);
1552  
1553 + }
1554  
1555  
1556 + //!jet valueLookup
1557   double
1558 < OSUAnalysis::valueLookup (const BNjet* object, string variable, string function){
1558 > OSUAnalysis::valueLookup (const BNjet* object, string variable, string function, string &stringValue){
1559  
1560    double value = 0.0;
1561    if(variable == "energy") value = object->energy;
# Line 1056 | Line 1674 | OSUAnalysis::valueLookup (const BNjet* o
1674    else if(variable == "puJetId_loose_simple") value = object->puJetId_loose_simple;
1675    else if(variable == "puJetId_loose_cutbased") value = object->puJetId_loose_cutbased;
1676  
1677 +  //user defined variable
1678 +  else if(variable == "disappTrkLeadingJetID") {
1679 +    value = object->pt > 110
1680 +      && fabs(object->eta) < 2.4
1681 +      && object->chargedHadronEnergyFraction > 0.2
1682 +      && object->neutralHadronEnergyFraction < 0.7
1683 +      && object->chargedEmEnergyFraction < 0.5
1684 +      && object->neutralEmEnergyFraction < 0.7;
1685 +  }
1686  
1687 <  else{std::cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
1687 >  else if(variable == "disappTrkSubLeadingJetID") {
1688 >    value = object->pt > 30
1689 >      && fabs(object->eta) < 4.5
1690 >      && object->neutralHadronEnergyFraction < 0.7
1691 >      && object->chargedEmEnergyFraction < 0.5;
1692 >  }
1693 >
1694 >  else if(variable == "dPhiMet") {
1695 >    if (const BNmet *met = chosenMET ()) {
1696 >      value = deltaPhi (object->phi, met->phi);
1697 >    } else value = -999;
1698 >  }
1699 >
1700 >
1701 >  else{clog << "WARNING: invalid jet variable '" << variable << "'\n"; value = -999;}
1702  
1703    value = applyFunction(function, value);
1704  
1705    return value;
1706 < }
1066 <
1706 > } // end jet valueLookup
1707  
1708  
1709 + //!muon valueLookup
1710   double
1711 < OSUAnalysis::valueLookup (const BNmuon* object, string variable, string function){
1711 > OSUAnalysis::valueLookup (const BNmuon* object, string variable, string function, string &stringValue){
1712  
1713    double value = 0.0;
1714    if(variable == "energy") value = object->energy;
# Line 1159 | Line 1800 | OSUAnalysis::valueLookup (const BNmuon*
1800    else if(variable == "neutralHadronIsoDR04") value = object->neutralHadronIsoDR04;
1801    else if(variable == "photonIsoDR04") value = object->photonIsoDR04;
1802    else if(variable == "puChargedHadronIsoDR04") value = object->puChargedHadronIsoDR04;
1803 +  else if(variable == "chargedHadronIsoDR04") value = object->chargedHadronIsoDR04;
1804 +  else if(variable == "neutralHadronIsoDR04") value = object->neutralHadronIsoDR04;
1805 +  else if(variable == "photonIsoDR04") value = object->photonIsoDR04;
1806 +  else if(variable == "puChargedHadronIsoDR04") value = object->puChargedHadronIsoDR04;
1807    else if(variable == "rhoPrime") value = object->rhoPrime;
1808    else if(variable == "AEffDr03") value = object->AEffDr03;
1809    else if(variable == "AEffDr04") value = object->AEffDr04;
# Line 1166 | Line 1811 | OSUAnalysis::valueLookup (const BNmuon*
1811    else if(variable == "pfIsoR03SumNeutralHadronEt") value = object->pfIsoR03SumNeutralHadronEt;
1812    else if(variable == "pfIsoR03SumPhotonEt") value = object->pfIsoR03SumPhotonEt;
1813    else if(variable == "pfIsoR03SumPUPt") value = object->pfIsoR03SumPUPt;
1814 +  else if(variable == "relpfIsoR04SumExceptChargedHad") value = (object->pfIsoR04SumNeutralHadronEt + object->pfIsoR04SumPhotonEt - 0.5*object->pfIsoR04SumPUPt)/ object->pt;
1815 +  else if(variable == "relpfIsoR04SumChargedHadronPt") value = object->pfIsoR04SumChargedHadronPt/object->pt;
1816 +  else if(variable == "relpfIsoR04SumNeutralHadronEt") value = object->pfIsoR04SumNeutralHadronEt/object->pt;
1817 +  else if(variable == "relpfIsoR04SumPhotonEt") value = object->pfIsoR04SumPhotonEt/object->pt;
1818 +  else if(variable == "relpfIsoR04SumPUPt") value = object->pfIsoR04SumPUPt/object->pt;
1819    else if(variable == "pfIsoR04SumChargedHadronPt") value = object->pfIsoR04SumChargedHadronPt;
1820    else if(variable == "pfIsoR04SumNeutralHadronEt") value = object->pfIsoR04SumNeutralHadronEt;
1821    else if(variable == "pfIsoR04SumPhotonEt") value = object->pfIsoR04SumPhotonEt;
# Line 1222 | Line 1872 | OSUAnalysis::valueLookup (const BNmuon*
1872    else if(variable == "time_ndof") value = object->time_ndof;
1873  
1874    //user-defined variables
1875 +  else if(variable == "looseID") {
1876 +    value = object->pt > 10 &&
1877 +      (object->isGlobalMuon  > 0 ||
1878 +       object->isTrackerMuon > 0);
1879 +  }
1880 +
1881 +  else if(variable == "looseIDGlobalMuon") {
1882 +    value = object->pt > 10 &&
1883 +      object->isGlobalMuon  > 0;
1884 +  }
1885    else if(variable == "correctedD0VertexErr") value =  hypot (object->tkD0err, hypot (chosenVertex ()->xError, chosenVertex ()->yError));
1886    else if(variable == "correctedD0VertexSig") value =  object->correctedD0Vertex / hypot (object->tkD0err, hypot (chosenVertex ()->xError, chosenVertex ()->yError));
1887    else if(variable == "detIso") value = (object->trackIsoDR03) / object->pt;
1888    else if(variable == "relPFdBetaIso") value = (object->pfIsoR04SumChargedHadronPt + max(0.0, object->pfIsoR04SumNeutralHadronEt + object->pfIsoR04SumPhotonEt - 0.5*object->pfIsoR04SumPUPt)) / object->pt;
1889 +  else if(variable == "relPFdBetaIsoPseudo") value = (object->pfIsoR04SumChargedHadronPt + object->pfIsoR04SumNeutralHadronEt + object->pfIsoR04SumPhotonEt - 0.5*object->pfIsoR04SumPUPt) / object->pt;
1890    else if(variable == "relPFrhoIso") value = ( object->chargedHadronIso + max(0.0, object->neutralHadronIso + object->photonIso - object->AEffDr03*object->rhoPrime) ) / object->pt;
1891    else if(variable == "metMT") {
1892 <    const BNmet *met = chosenMET ();
1232 <    if (met)
1892 >    if (const BNmet *met = chosenMET ())
1893        {
1894 <        TLorentzVector p1 (object->px, object->py, object->pz, object->energy),
1895 <          p2 (met->px, met->py, 0.0, met->pt);
1896 <
1897 <        value = (p1 + p2).Mt ();
1894 >        double dPhi = deltaPhi (object->phi, met->phi);
1895 >        value = sqrt (2 * object->pt * met->pt * (1 - cos (dPhi)));
1896 >      }
1897 >    else
1898 >      value = -999;
1899 >  }
1900 >  else if(variable == "ptPlusMet") {
1901 >    // Calculate the magnitude of the vector sum of the muon pT and the Met.  
1902 >    if (const BNmet *met = chosenMET ())
1903 >      {
1904 >        TVector2 p2Met;
1905 >        TVector2 p2Muon;
1906 >        p2Met. SetMagPhi(   met->pt,    met->phi);
1907 >        p2Muon.SetMagPhi(object->pt, object->phi);  
1908 >        TVector2 p2MetElec = p2Met + p2Muon;
1909 >        value = p2MetElec.Mod();  
1910        }
1911      else
1912        value = -999;
1913    }
1242
1243
1914  
1915    else if(variable == "correctedD0VertexInEBPlus"){
1916      if(fabs(object->eta) < 0.8 && object->eta > 0) value = object->correctedD0Vertex;
# Line 1352 | Line 2022 | OSUAnalysis::valueLookup (const BNmuon*
2022      value = object->isGlobalMuon > 0                \
2023        && object->isPFMuon > 0                        \
2024        && object->normalizedChi2 < 10                \
2025 <                                  && object->numberOfValidMuonHits > 0        \
2025 >      && object->numberOfValidMuonHits > 0        \
2026        && object->numberOfMatchedStations > 1        \
2027        && fabs(object->correctedD0Vertex) < 0.2        \
2028        && fabs(object->correctedDZ) < 0.5        \
# Line 1361 | Line 2031 | OSUAnalysis::valueLookup (const BNmuon*
2031    }
2032    else if(variable == "tightIDdisplaced"){
2033      value = object->isGlobalMuon > 0                \
2034 +      && object->isPFMuon > 0                        \
2035        && object->normalizedChi2 < 10                \
2036 <                                  && object->numberOfValidMuonHits > 0        \
2036 >      && object->numberOfValidMuonHits > 0        \
2037        && object->numberOfMatchedStations > 1        \
2038        && object->numberOfValidPixelHits > 0        \
2039        && object->numberOfLayersWithMeasurement > 5;
2040    }
2041  
2042 <  else if(variable == "genDeltaRLowest") value = getGenDeltaRLowest(object);
2042 >  else if(variable == "genDeltaRLowest") value = getGenDeltaRLowest(object);
2043  
2044    else if(variable == "genMatchedPdgId"){
2045      int index = getGenMatchedParticleIndex(object);
# Line 1388 | Line 2059 | OSUAnalysis::valueLookup (const BNmuon*
2059    }
2060    else if(variable == "genMatchedMotherIdReverse"){
2061      int index = getGenMatchedParticleIndex(object);
2062 <    if(index == -1) value = 23;
2063 <    else value = 23 -getPdgIdBinValue(mcparticles->at(index).motherId);
2062 >    if(index == -1) value = 24;
2063 >    else value = 24 - getPdgIdBinValue(mcparticles->at(index).motherId);
2064    }
2065    else if(variable == "genMatchedGrandmotherId"){
2066      int index = getGenMatchedParticleIndex(object);
# Line 1401 | Line 2072 | OSUAnalysis::valueLookup (const BNmuon*
2072      }
2073      else value = getPdgIdBinValue(mcparticles->at(index).grandMotherId);
2074    }
2075 +  else if(variable == "genMatchedGrandmotherIdReverse"){
2076 +    int index = getGenMatchedParticleIndex(object);
2077 +    if(index == -1) value = 24;
2078 +    else if(fabs(mcparticles->at(index).motherId) == 15){
2079 +      int motherIndex = findTauMotherIndex(&mcparticles->at(index));
2080 +      if(motherIndex == -1) value = 24;
2081 +      else value = 24 - getPdgIdBinValue(mcparticles->at(motherIndex).motherId);
2082 +    }
2083 +    else value = 24 - getPdgIdBinValue(mcparticles->at(index).grandMotherId);
2084 +  }
2085 +  else if(variable == "pfMuonsFromVertex"){
2086 +    double d0Error, dzError;
2087  
2088 +    d0Error = hypot (object->tkD0err, hypot (chosenVertex ()->xError, chosenVertex ()->yError));
2089 +    dzError = hypot (object->tkDZerr, chosenVertex ()->zError);
2090 +    value = fabs (object->correctedD0Vertex) > 0.2 || fabs (object->correctedDZ) > 0.5
2091 +      || fabs (object->correctedD0Vertex / d0Error) > 99.0
2092 +      || fabs (object->correctedDZ / dzError) > 99.0;
2093 +    value = (object->isStandAloneMuon && !object->isTrackerMuon && !object->isGlobalMuon) || !value;
2094 +  }
2095  
2096  
2097 <  else{std::cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
2097 >
2098 >  else{clog << "WARNING: invalid muon variable '" << variable << "'\n"; value = -999;}
2099  
2100    value = applyFunction(function, value);
2101  
2102    return value;
2103 < }
2103 > } // end muon valueLookup
2104  
2105  
2106 + //!electron valueLookup
2107   double
2108 < OSUAnalysis::valueLookup (const BNelectron* object, string variable, string function){
2108 > OSUAnalysis::valueLookup (const BNelectron* object, string variable, string function, string &stringValue){
2109  
2110    double value = 0.0;
2111    if(variable == "energy") value = object->energy;
# Line 1578 | Line 2270 | OSUAnalysis::valueLookup (const BNelectr
2270    else if(variable == "correctedD0VertexSig") value =  object->correctedD0Vertex / hypot (object->tkD0err, hypot (chosenVertex ()->xError, chosenVertex ()->yError));
2271    else if(variable == "detIso") value = (object->trackIso) / object->pt;
2272    else if(variable == "relPFrhoIso") value = ( object->chargedHadronIsoDR03 + max(0.0, object->neutralHadronIsoDR03 + object->photonIsoDR03 - object->AEffDr03*object->rhoPrime) ) / object->pt;
2273 +  else if(variable == "relPFrhoIsoEB") value = object->isEB ? ( object->chargedHadronIsoDR03 + max(0.0, object->neutralHadronIsoDR03 + object->photonIsoDR03 - object->AEffDr03*object->rhoPrime) ) / object->pt : -999;
2274 +  else if(variable == "relPFrhoIsoEE") value = object->isEE ? ( object->chargedHadronIsoDR03 + max(0.0, object->neutralHadronIsoDR03 + object->photonIsoDR03 - object->AEffDr03*object->rhoPrime) ) / object->pt : -999;
2275    else if(variable == "metMT") {
2276 <    const BNmet *met = chosenMET ();
1583 <    if (met)
2276 >    if (const BNmet *met = chosenMET ())
2277        {
2278 <        TLorentzVector p1 (object->px, object->py, object->pz, object->energy),
2279 <          p2 (met->px, met->py, 0.0, met->pt);
2278 >        double dPhi = deltaPhi (object->phi, met->phi);
2279 >        value = sqrt (2 * object->pt * met->pt * (1 - cos (dPhi)));
2280 >      }
2281 >    else
2282 >      value = -999;
2283 >  }
2284  
2285 <        value = (p1 + p2).Mt ();
2285 >  else if(variable == "ptPlusMet") {
2286 >    // Calculate the magnitude of the vector sum of the electron pT and the Met.  
2287 >    if (const BNmet *met = chosenMET ())
2288 >      {
2289 >        TVector2 p2Met;
2290 >        TVector2 p2Elec;
2291 >        p2Met. SetMagPhi(   met->pt,    met->phi);
2292 >        p2Elec.SetMagPhi(object->pt, object->phi);  
2293 >        TVector2 p2MetElec = p2Met + p2Elec;
2294 >        value = p2MetElec.Mod();  
2295        }
2296      else
2297        value = -999;
# Line 1652 | Line 2358 | OSUAnalysis::valueLookup (const BNelectr
2358      else value = -999;
2359    }
2360  
2361 +  else if(variable == "looseID"){
2362 +    if (object->isEB)
2363 +      {
2364 +        value = fabs(object->delEtaIn) < 0.007 \
2365 +          && fabs (object->delPhiIn) < 0.15 \
2366 +          && object->scSigmaIEtaIEta < 0.01 \
2367 +          && object->hadOverEm < 0.12 \
2368 +          && fabs (object->correctedD0Vertex) < 0.02 \
2369 +          && fabs (object->correctedDZ) < 0.2 \
2370 +          && object->absInvEMinusInvPin < 0.05 \
2371 +          && object->passConvVeto;
2372 +      }
2373 +    else
2374 +      {
2375 +        value = fabs(object->delEtaIn) < 0.009 \
2376 +          && fabs (object->delPhiIn) < 0.10 \
2377 +          && object->scSigmaIEtaIEta < 0.03 \
2378 +          && object->hadOverEm < 0.10 \
2379 +          && fabs (object->correctedD0Vertex) < 0.02 \
2380 +          && fabs (object->correctedDZ) < 0.2 \
2381 +          && object->absInvEMinusInvPin < 0.05 \
2382 +          && object->passConvVeto;
2383 +      }
2384 +  }
2385 +
2386    else if(variable == "tightID"){
2387      if (object->isEB)
2388        {
# Line 1677 | Line 2408 | OSUAnalysis::valueLookup (const BNelectr
2408        }
2409    }
2410  
2411 +  else if(variable == "looseID_MVA"){
2412 +    value = object->pt > 10
2413 +      && object->mvaNonTrigV0 > 0;
2414 +      }
2415    else if(variable == "correctedD0VertexInEBPositiveCharge"){
2416      if(fabs(object->eta) < 0.8 && object->charge > 0) value = object->correctedD0Vertex;
2417      else value = -999;
# Line 1750 | Line 2485 | OSUAnalysis::valueLookup (const BNelectr
2485    }
2486  
2487  
2488 <  else if(variable == "genDeltaRLowest") value = getGenDeltaRLowest(object);
2488 >  else if(variable == "genDeltaRLowest") value = getGenDeltaRLowest(object);
2489  
2490    else if(variable == "genMatchedPdgId"){
2491      int index = getGenMatchedParticleIndex(object);
# Line 1771 | Line 2506 | OSUAnalysis::valueLookup (const BNelectr
2506    }
2507    else if(variable == "genMatchedMotherIdReverse"){
2508      int index = getGenMatchedParticleIndex(object);
2509 <    if(index == -1) value = 23;
2510 <    else value = 23 -getPdgIdBinValue(mcparticles->at(index).motherId);
2509 >    if(index == -1) value = 24;
2510 >    else value = 24 -getPdgIdBinValue(mcparticles->at(index).motherId);
2511    }
2512    else if(variable == "genMatchedGrandmotherId"){
2513      int index = getGenMatchedParticleIndex(object);
# Line 1784 | Line 2519 | OSUAnalysis::valueLookup (const BNelectr
2519      }
2520      else value = getPdgIdBinValue(mcparticles->at(index).grandMotherId);
2521    }
2522 +  else if(variable == "genMatchedGrandmotherIdReverse"){
2523 +    int index = getGenMatchedParticleIndex(object);
2524 +    if(index == -1) value = 24;
2525 +    else if(fabs(mcparticles->at(index).motherId) == 15){
2526 +      int motherIndex = findTauMotherIndex(&mcparticles->at(index));
2527 +      if(motherIndex == -1) value = 24;
2528 +      else value = 24 - getPdgIdBinValue(mcparticles->at(motherIndex).motherId);
2529 +    }
2530 +    else value = 24 - getPdgIdBinValue(mcparticles->at(index).grandMotherId);
2531 +  }
2532 +  else if(variable == "pfElectronsFromVertex"){
2533 +    double d0Error, dzError;
2534  
2535 +    d0Error = hypot (object->tkD0err, hypot (chosenVertex ()->xError, chosenVertex ()->yError));
2536 +    dzError = hypot (object->tkDZerr, chosenVertex ()->zError);
2537 +    value = fabs (object->correctedD0Vertex) > 0.2 || fabs (object->correctedDZ) > 0.5
2538 +      || fabs (object->correctedD0Vertex / d0Error) > 99.0
2539 +      || fabs (object->correctedDZ / dzError) > 99.0;
2540 +    value = !value;
2541 +  }
2542  
2543  
2544 <  else{std::cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
2544 >
2545 >  else{clog << "WARNING: invalid electron variable '" << variable << "'\n"; value = -999;}
2546  
2547    value = applyFunction(function, value);
2548  
2549    return value;
2550 < }
2550 > } // end electron valueLookup
2551  
2552  
2553 + //!event valueLookup
2554   double
2555 < OSUAnalysis::valueLookup (const BNevent* object, string variable, string function){
2555 > OSUAnalysis::valueLookup (const BNevent* object, string variable, string function, string &stringValue){
2556  
2557    double value = 0.0;
2558  
# Line 1865 | Line 2621 | OSUAnalysis::valueLookup (const BNevent*
2621    else if(variable == "id2") value = object->id2;
2622    else if(variable == "evt") value = object->evt;
2623    else if(variable == "puScaleFactor"){
2624 <    if(datasetType_ != "data")
2624 >    if(doPileupReweighting_ && datasetType_ != "data")
2625        value = puWeight_->at (events->at (0).numTruePV);
2626      else
2627        value = 1.0;
2628    }
2629 <  else if(variable == "muonScaleFactor"){
2630 <    if(datasetType_ != "data")
2631 <      //      value = muonSFWeight_->at (chosenMuon ()->eta);
2632 <      value = 1.0;
2633 <    else
2634 <      value = 1.0;
2635 <  }
2636 <  else if(variable == "electronScaleFactor"){
2637 <    if(datasetType_ != "data")
2638 <      //      value = electronSFWeight_->at (chosenElectron ()->eta, chosenElectron ()->pt);
2639 <      value = 1.0;
2640 <    else
2641 <      value = 1.0;
2629 >  else if(variable == "muonScaleFactor") value = muonScaleFactor_;
2630 >  else if(variable == "electronScaleFactor") value = electronScaleFactor_;
2631 >  else if(variable == "stopCTauScaleFactor") value = stopCTauScaleFactor_;
2632 >  else if(variable == "bTagScaleFactor") value = bTagScaleFactor_;
2633 >
2634 >  else if(variable == "unfilteredHt") value = getHt(jets.product());
2635 >  else if(variable == "ht") value = chosenHT ();
2636 >
2637 >  else if(variable == "leadMuPairInvMass"){
2638 >    pair<const BNmuon *, const BNmuon *> muPair = leadMuonPair ();
2639 >    TLorentzVector p0 (muPair.first->px, muPair.first->py, muPair.first->pz, muPair.first->energy),
2640 >                   p1 (muPair.second->px, muPair.second->py, muPair.second->pz, muPair.second->energy);
2641 >    value = (p0 + p1).M ();
2642 >  }
2643 >  else if(variable == "leadMuPairPt"){
2644 >    pair<const BNmuon *, const BNmuon *> muPair = leadMuonPair ();
2645 >    TVector2 pt0 (muPair.first->px, muPair.first->py),
2646 >             pt1 (muPair.second->px, muPair.second->py);
2647 >    pt0 += pt1;
2648 >    value = pt0.Mod ();
2649 >  }
2650 >  else if(variable == "leadElPairInvMass"){
2651 >    pair<const BNelectron *, const BNelectron *> muPair = leadElectronPair ();
2652 >    TLorentzVector p0 (muPair.first->px, muPair.first->py, muPair.first->pz, muPair.first->energy),
2653 >                   p1 (muPair.second->px, muPair.second->py, muPair.second->pz, muPair.second->energy);
2654 >    value = (p0 + p1).M ();
2655 >  }
2656 >  else if(variable == "leadElPairPt"){
2657 >    pair<const BNelectron *, const BNelectron *> muPair = leadElectronPair ();
2658 >    TVector2 pt0 (muPair.first->px, muPair.first->py),
2659 >             pt1 (muPair.second->px, muPair.second->py);
2660 >    pt0 += pt1;
2661 >    value = pt0.Mod ();
2662    }
2663 <  else if(variable == "cTauScaleFactor")
1888 <    value = cTauScaleFactor_;
1889 <
1890 <  else{std::cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
2663 >  else{clog << "WARNING: invalid event variable '" << variable << "'\n"; value = -999;}
2664  
2665    value = applyFunction(function, value);
2666  
2667    return value;
2668 < }
2668 > } // end event valueLookup
2669 >
2670  
2671 + //!tau valueLookup
2672   double
2673 < OSUAnalysis::valueLookup (const BNtau* object, string variable, string function){
2673 > OSUAnalysis::valueLookup (const BNtau* object, string variable, string function, string &stringValue){
2674  
2675    double value = 0.0;
2676  
# Line 1939 | Line 2714 | OSUAnalysis::valueLookup (const BNtau* o
2714    else if(variable == "HPSdecayModeFinding") value = object->HPSdecayModeFinding;
2715    else if(variable == "leadingTrackValid") value = object->leadingTrackValid;
2716  
2717 +  else if (variable == "looseHadronicID") {
2718 +    //criteria taken from http://cms.cern.ch/iCMS/jsp/db_notes/showNoteDetails.jsp?noteID=CMS%20AN-2011/019
2719 +    value = object->pt > 30
2720 +      && fabs(object->eta) < 2.3
2721 +      && object->HPSbyLooseCombinedIsolationDeltaBetaCorr > 0
2722 +      && object->HPSdecayModeFinding > 0
2723 +      && object->HPSagainstElectronLoose > 0
2724 +      && object->HPSagainstMuonTight > 0;
2725 +  }
2726  
2727 <
1944 <  else if(variable == "genDeltaRLowest") value = getGenDeltaRLowest(object);
2727 >  else if(variable == "genDeltaRLowest") value = getGenDeltaRLowest(object);
2728  
2729    else if(variable == "genMatchedPdgId"){
2730      int index = getGenMatchedParticleIndex(object);
# Line 1961 | Line 2744 | OSUAnalysis::valueLookup (const BNtau* o
2744    }
2745    else if(variable == "genMatchedMotherIdReverse"){
2746      int index = getGenMatchedParticleIndex(object);
2747 <    if(index == -1) value = 23;
2748 <    else value = 23 -getPdgIdBinValue(mcparticles->at(index).motherId);
2747 >    if(index == -1) value = 24;
2748 >    else value = 24 -getPdgIdBinValue(mcparticles->at(index).motherId);
2749    }
2750    else if(variable == "genMatchedGrandmotherId"){
2751      int index = getGenMatchedParticleIndex(object);
# Line 1974 | Line 2757 | OSUAnalysis::valueLookup (const BNtau* o
2757      }
2758      else value = getPdgIdBinValue(mcparticles->at(index).grandMotherId);
2759    }
2760 +  else if(variable == "genMatchedGrandmotherIdReverse"){
2761 +    int index = getGenMatchedParticleIndex(object);
2762 +    if(index == -1) value = 24;
2763 +    else if(fabs(mcparticles->at(index).motherId) == 15){
2764 +      int motherIndex = findTauMotherIndex(&mcparticles->at(index));
2765 +      if(motherIndex == -1) value = 24;
2766 +      else value = 24 - getPdgIdBinValue(mcparticles->at(motherIndex).motherId);
2767 +    }
2768 +    else value = 24 - getPdgIdBinValue(mcparticles->at(index).grandMotherId);
2769 +  }
2770  
2771  
2772 <  else{std::cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
2772 >  else{clog << "WARNING: invalid tau variable '" << variable << "'\n"; value = -999;}
2773  
2774    value = applyFunction(function, value);
2775  
2776    return value;
2777 < }
2777 > } // end tau valueLookup
2778 >
2779  
2780 + //!met valueLookup
2781   double
2782 < OSUAnalysis::valueLookup (const BNmet* object, string variable, string function){
2782 > OSUAnalysis::valueLookup (const BNmet* object, string variable, string function, string &stringValue){
2783  
2784    double value = 0.0;
2785  
# Line 2048 | Line 2843 | OSUAnalysis::valueLookup (const BNmet* o
2843    else if(variable == "pfT1jet10pt") value = object->pfT1jet10pt;
2844    else if(variable == "pfT1jet10phi") value = object->pfT1jet10phi;
2845  
2846 <  else{std::cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
2846 >  else{clog << "WARNING: invalid met variable '" << variable << "'\n"; value = -999;}
2847  
2848    value = applyFunction(function, value);
2849  
2850    return value;
2851 < }
2851 > } // end met valueLookup
2852 >
2853  
2854 + //!track valueLookup
2855   double
2856 < OSUAnalysis::valueLookup (const BNtrack* object, string variable, string function){
2856 > OSUAnalysis::valueLookup (const BNtrack* object, string variable, string function, string &stringValue){
2857  
2858    double value = 0.0;
2859    double pMag = sqrt(object->pt * object->pt +
2860 <                     object->pz * object->pz);
2861 <  
2860 >                     object->pz * object->pz);
2861 >
2862    if(variable == "pt") value = object->pt;
2863    else if(variable == "px") value = object->px;
2864    else if(variable == "py") value = object->py;
# Line 2080 | Line 2877 | OSUAnalysis::valueLookup (const BNtrack*
2877    else if(variable == "numValidHits") value = object->numValidHits;
2878    else if(variable == "isHighPurity") value = object->isHighPurity;
2879  
2083
2880    //additional BNs info for disappTrks
2881 <  else if(variable == "isGoodPtResolution") value = object->isGoodPtResolution;
2882 <  else if(variable == "caloEMDeltaRp3") value = object->caloEMDeltaRp3;
2883 <  else if(variable == "caloHadDeltaRp3") value = object->caloHadDeltaRp3;
2884 <  else if(variable == "caloEMDeltaRp4") value = object->caloEMDeltaRp4;
2885 <  else if(variable == "caloHadDeltaRp4") value = object->caloHadDeltaRp4;
2886 <  else if(variable == "caloEMDeltaRp5") value = object->caloEMDeltaRp5;
2887 <  else if(variable == "caloHadDeltaRp5") value = object->caloHadDeltaRp5;
2888 <  else if(variable == "nHitsMissingOuter") value = object->nHitsMissingOuter;
2093 <  else if(variable == "nHitsMissingInner") value = object->nHitsMissingInner;
2881 >  else if(variable == "caloEMDeltaRp3")     value = object->caloEMDeltaRp3;
2882 >  else if(variable == "caloHadDeltaRp3")    value = object->caloHadDeltaRp3;
2883 >  else if(variable == "caloEMDeltaRp4")     value = object->caloEMDeltaRp4;
2884 >  else if(variable == "caloHadDeltaRp4")    value = object->caloHadDeltaRp4;
2885 >  else if(variable == "caloEMDeltaRp5")     value = object->caloEMDeltaRp5;
2886 >  else if(variable == "caloHadDeltaRp5")    value = object->caloHadDeltaRp5;
2887 >  else if(variable == "nHitsMissingOuter")  value = object->nHitsMissingOuter;
2888 >  else if(variable == "nHitsMissingInner")  value = object->nHitsMissingInner;
2889    else if(variable == "nHitsMissingMiddle") value = object->nHitsMissingMiddle;
2890 <  
2890 >  else if(variable == "depTrkRp3")          value = object->depTrkRp3;
2891 >  else if(variable == "trkRelIsoRp3")     { value = (object->depTrkRp3 - object->pt) / object->pt; if (value<0) value = 0; }
2892 >  else if(variable == "trkRelIsoRp5")     { value = (object->depTrkRp5 - object->pt) / object->pt; if (value<0) value = 0; }
2893 >  else if(variable == "depEcalRp3")         value = object->depEcalRp3;
2894 >  else if(variable == "depHcalRp3")         value = object->depHcalRp3;
2895 >  else if(variable == "depHoRp3")           value = object->depHoRp3;
2896 >  else if(variable == "nTracksRp3")         value = object->nTracksRp3;
2897 >  else if(variable == "trackerVetoPtRp3")   value = object->trackerVetoPtRp3;
2898 >  else if(variable == "emVetoEtRp3")        value = object->emVetoEtRp3;
2899 >  else if(variable == "hadVetoEtRp3")       value = object->hadVetoEtRp3;
2900 >  else if(variable == "hoVetoEtRp3")        value = object->hoVetoEtRp3;
2901 >  else if(variable == "depTrkRp5")          value = object->depTrkRp5;
2902 >  else if(variable == "depEcalRp5")         value = object->depEcalRp5;
2903 >  else if(variable == "depHcalRp5")         value = object->depHcalRp5;
2904 >  else if(variable == "depHoRp5")           value = object->depHoRp5;
2905 >  else if(variable == "nTracksRp5")         value = object->nTracksRp5;
2906 >  else if(variable == "trackerVetoPtRp5")   value = object->trackerVetoPtRp5;
2907 >  else if(variable == "emVetoEtRp5")        value = object->emVetoEtRp5;
2908 >  else if(variable == "hadVetoEtRp5")       value = object->hadVetoEtRp5;
2909 >  else if(variable == "hoVetoEtRp5")        value = object->hoVetoEtRp5;
2910  
2911    //user defined variables
2912    else if(variable == "d0wrtBS") value = (object->vx-events->at(0).BSx)*object->py/object->pt - (object->vy-events->at(0).BSy)*object->px/object->pt;
2913    else if(variable == "dZwrtBS") value = object->dZ - events->at(0).BSz;
2914 +  else if(variable == "depTrkRp5MinusPt"){
2915 +    if ( (object->depTrkRp5 - object->pt) < 0 ) {
2916 + //       clog << "Warning:  found track with depTrkRp5 < pt:  depTrkRp5=" << object->depTrkRp5
2917 + //         << "; pt=" << object->pt
2918 + //         << "; object->depTrkRp5 - object->pt = " << object->depTrkRp5 - object->pt
2919 + //         << endl;  
2920 +           value = 0;
2921 +         }
2922 +         else value =  (object->depTrkRp5 - object->pt);
2923 +  }
2924 +  else if(variable == "depTrkRp3MinusPt"){
2925 +    if ( (object->depTrkRp3 - object->pt) < 0 ) {
2926 +      value = 0;
2927 +    }
2928 +    else value =  (object->depTrkRp3 - object->pt);
2929 +  }
2930 +
2931 +  else if(variable == "dPhiMet") {
2932 +    if (const BNmet *met = chosenMET ()) {
2933 +      value = deltaPhi (object->phi, met->phi);
2934 +    } else value = -999;
2935 +  }
2936 +  
2937 +  
2938    else if(variable == "caloTotDeltaRp5")            value =  (object->caloHadDeltaRp5 + object->caloEMDeltaRp5);
2939    else if(variable == "caloTotDeltaRp5ByP")         value = ((object->caloHadDeltaRp5 + object->caloEMDeltaRp5)/pMag);
2940 <  else if(variable == "caloTotDeltaRp5RhoCorr")     value = getTrkCaloTotRhoCorr(object);  
2941 <  else if(variable == "caloTotDeltaRp5ByPRhoCorr")  value = getTrkCaloTotRhoCorr(object) / pMag;  
2940 >  else if(variable == "caloTotDeltaRp5RhoCorr")     value = getTrkCaloTotRhoCorr(object);
2941 >  else if(variable == "caloTotDeltaRp5ByPRhoCorr")  value = getTrkCaloTotRhoCorr(object) / pMag;
2942 >  else if(variable == "depTrkRp5RhoCorr")           value = getTrkDepTrkRp5RhoCorr(object);
2943 >  else if(variable == "depTrkRp3RhoCorr")           value = getTrkDepTrkRp3RhoCorr(object);
2944 >
2945 >  else if(variable == "depTrkRp5MinusPtRhoCorr")    {
2946 >    if ( (getTrkDepTrkRp5RhoCorr(object) - object->pt) < 0 ) value = 0;
2947 >    else {value = (getTrkDepTrkRp5RhoCorr(object) - object->pt );}
2948 >  }
2949 >  
2950 >  else if(variable == "depTrkRp3MinusPtRhoCorr")    
2951 >    {
2952 >      if ( (getTrkDepTrkRp3RhoCorr(object) - object->pt) < 0 ) value = 0;
2953 >      else {value = (getTrkDepTrkRp3RhoCorr(object) - object->pt );}
2954 >    }
2955 >
2956    else if(variable == "isIso")                      value = getTrkIsIso(object, tracks.product());
2957    else if(variable == "isMatchedDeadEcal")          value = getTrkIsMatchedDeadEcal(object);
2958    else if(variable == "ptErrorByPt")                value = (object->ptError/object->pt);
2959    else if(variable == "ptError")                    value = object->ptError;
2960    else if(variable == "ptRes")                      value = getTrkPtRes(object);
2961 <  else if (variable == "d0wrtPV"){      
2962 <    double vx = object->vx - chosenVertex ()->x,        
2963 <      vy = object->vy - chosenVertex ()->y,      
2964 <      px = object->px,  
2965 <      py = object->py,  
2966 <      pt = object->pt;  
2967 <    value = (-vx * py + vy * px) / pt;  
2968 <  }      
2969 <  else if (variable == "dZwrtPV"){      
2970 <    double vx = object->vx - chosenVertex ()->x,        
2971 <      vy = object->vy - chosenVertex ()->y,      
2972 <      vz = object->vz - chosenVertex ()->z,      
2973 <      px = object->px,  
2974 <      py = object->py,  
2975 <      pz = object->pz,  
2976 <      pt = object->pt;  
2977 <    value = vz - (vx * px + vy * py)/pt * (pz/pt);      
2978 <  }    
2979 <  else if(variable == "genDeltaRLowest") value = getGenDeltaRLowest(object);
2961 >  else if (variable == "d0wrtPV"){
2962 >    double vx = object->vx - chosenVertex ()->x,
2963 >      vy = object->vy - chosenVertex ()->y,
2964 >      px = object->px,
2965 >      py = object->py,
2966 >      pt = object->pt;
2967 >    value = (-vx * py + vy * px) / pt;
2968 >  }
2969 >  else if (variable == "dZwrtPV"){
2970 >    double vx = object->vx - chosenVertex ()->x,
2971 >      vy = object->vy - chosenVertex ()->y,
2972 >      vz = object->vz - chosenVertex ()->z,
2973 >      px = object->px,
2974 >      py = object->py,
2975 >      pz = object->pz,
2976 >      pt = object->pt;
2977 >    value = vz - (vx * px + vy * py)/pt * (pz/pt);
2978 >  }
2979 >
2980 >  else if(variable == "deltaRMinSubLeadJet") {
2981 >    // calculate minimum deltaR between track and any other subleading jet  
2982 >    double trkJetDeltaRMin = 99.;  
2983 >    for (uint ijet = 0; ijet<jets->size(); ijet++) {
2984 >      string empty = "";  
2985 >      double isSubLeadingJet = valueLookup(&jets->at(ijet), "disappTrkSubLeadingJetID", "", empty);  
2986 >      if (!isSubLeadingJet) continue;  // only consider jets that pass the subleading jet ID criteria  
2987 >      double jetEta = valueLookup(&jets->at(ijet), "eta", "", empty);
2988 >      double jetPhi = valueLookup(&jets->at(ijet), "phi", "", empty);
2989 >      double trkJetDeltaR = deltaR(object->eta, object->phi, jetEta, jetPhi);  
2990 >      if (trkJetDeltaR < trkJetDeltaRMin) trkJetDeltaRMin = trkJetDeltaR;
2991 >    }
2992 >    value = trkJetDeltaRMin;  
2993 >  }  
2994 >  
2995 >  else if(variable == "deltaRMinElecLooseMvaId") {
2996 >    // calculate minimum deltaR between track and any other electron passing loose mva ID, i.e., mvaNonTrigV0 > 0
2997 >    double trkElecDeltaRMin = 99.;  
2998 >    for (uint ielec = 0; ielec<electrons->size(); ielec++) {
2999 >      string empty = "";  
3000 >      double mvaNonTrigV0 = valueLookup(&electrons->at(ielec), "mvaNonTrigV0", "", empty);  
3001 >      if (mvaNonTrigV0 < 0) continue;  // only consider electrons with mvaNonTrigV0 > 0  
3002 >      double elecEta = valueLookup(&electrons->at(ielec), "eta", "", empty);
3003 >      double elecPhi = valueLookup(&electrons->at(ielec), "phi", "", empty);
3004 >      double trkElecDeltaR = deltaR(object->eta, object->phi, elecEta, elecPhi);  
3005 >      if (trkElecDeltaR < trkElecDeltaRMin) trkElecDeltaRMin = trkElecDeltaR;
3006 >    }
3007 >    value = trkElecDeltaRMin;  
3008 >  }  
3009 >
3010 >  else if(variable == "deltaRMinMuonLooseId") {
3011 >    // calculate minimum deltaR between track and any other loose-Id muon
3012 >    double trkMuonDeltaRMin = 99.;  
3013 >    //    if (!muons) cout << "ERROR:  could not find muon collection for calculation of deltaRMinMuonLooseId" << endl;  
3014 >    for (uint imuon = 0; imuon<muons->size(); imuon++) {
3015 >      string empty = "";  
3016 >      double isLooseIdMuon = valueLookup(&muons->at(imuon), "looseID", "", empty);  
3017 >      if (!isLooseIdMuon) continue;  // only consider muons that pass the looseID criteria  
3018 >      double muonEta = valueLookup(&muons->at(imuon), "eta", "", empty);
3019 >      double muonPhi = valueLookup(&muons->at(imuon), "phi", "", empty);
3020 >      double trkMuonDeltaR = deltaR(object->eta, object->phi, muonEta, muonPhi);  
3021 >      if (trkMuonDeltaR < trkMuonDeltaRMin) trkMuonDeltaRMin = trkMuonDeltaR;
3022 >    }
3023 >    value = trkMuonDeltaRMin;  
3024 >  }  
3025 >
3026 >  else if(variable == "isPassMuonLooseIDVeto") {
3027 >
3028 >    // calculate minimum deltaR between track and any other loose-Id
3029 >    double trkMuonDeltaRMin = 99.;
3030 >    //    if (!muons) cout << "ERROR:  could not find muon collection for calculation of deltaRMinMuonLooseId" <<                                                                          
3031 >    for (uint imuon = 0; imuon<muons->size(); imuon++) {
3032 >      string empty = "";
3033 >      double isLooseIdMuon = valueLookup(&muons->at(imuon), "looseID", "", empty);
3034 >      if (!isLooseIdMuon) continue;  // only consider muons that pass the looseID                                
3035 >        double muonEta = valueLookup(&muons->at(imuon), "eta", "", empty);
3036 >        double muonPhi = valueLookup(&muons->at(imuon), "phi", "", empty);
3037 >        double trkMuonDeltaR = deltaR(object->eta, object->phi, muonEta, muonPhi);
3038 >        if (trkMuonDeltaR < trkMuonDeltaRMin) trkMuonDeltaRMin = trkMuonDeltaR;
3039 >    }
3040 >    if (trkMuonDeltaRMin  < 0.15) value = 1;
3041 >    if (trkMuonDeltaRMin  > 0.15) value = 0;
3042 >  }
3043 >
3044 >
3045 >  
3046 >  else if(variable == "deltaRMinSecMuonLooseIdGlobal") {
3047 >    // calculate minimum deltaR between track and any other loose-Id muon
3048 >    double trkMuonDeltaRMin = 99.;  
3049 >    //    if (!secMuons) cout << "ERROR:  could not find secondary muon collection for calculation of deltaRMinSecMuonLooseIdGlobal" << endl;  
3050 >    for (uint imuon = 0; imuon<secMuons->size(); imuon++) {  
3051 >      string empty = "";  
3052 >      double isLooseIdMuon = valueLookup(&secMuons->at(imuon), "looseIDGlobalMuon", "", empty);  
3053 >      if (!isLooseIdMuon) continue;  // only consider muons that pass the looseIDGlobal criteria  
3054 >      double muonEta = valueLookup(&secMuons->at(imuon), "eta", "", empty);
3055 >      double muonPhi = valueLookup(&secMuons->at(imuon), "phi", "", empty);
3056 >      double trkMuonDeltaR = deltaR(object->eta, object->phi, muonEta, muonPhi);  
3057 >      if (trkMuonDeltaR < trkMuonDeltaRMin) trkMuonDeltaRMin = trkMuonDeltaR;
3058 >    }
3059 >    value = trkMuonDeltaRMin;  
3060 >  }  
3061 >  
3062 >  else if(variable == "deltaRMinTauLooseHadronicId") {
3063 >    // calculate minimum deltaR between track and any other tau passing loose hadronic ID  
3064 >    double trkTauDeltaRMin = 99.;  
3065 >    //    if (!taus) cout << "ERROR:  could not find tau collection for calculation of deltaRMinTauLooseHadronicId" << endl;  
3066 >    for (uint itau = 0; itau<taus->size(); itau++) {
3067 >      string empty = "";  
3068 >      double isIdTau = valueLookup(&taus->at(itau), "looseHadronicID", "", empty);  
3069 >      if (!isIdTau) continue;  // only consider taus that pass the loose hadronic ID criteria  
3070 >      double tauEta = valueLookup(&taus->at(itau), "eta", "", empty);
3071 >      double tauPhi = valueLookup(&taus->at(itau), "phi", "", empty);
3072 >      double trkTauDeltaR = deltaR(object->eta, object->phi, tauEta, tauPhi);  
3073 >      if (trkTauDeltaR < trkTauDeltaRMin) trkTauDeltaRMin = trkTauDeltaR;
3074 >    }
3075 >    value = trkTauDeltaRMin;  
3076 >  }  
3077 >
3078 >  else if(variable == "genDeltaRLowest") value = getGenDeltaRLowest(object);
3079  
3080    else if(variable == "genMatchedPdgId"){
3081      int index = getGenMatchedParticleIndex(object);
# Line 2145 | Line 3096 | OSUAnalysis::valueLookup (const BNtrack*
3096    }
3097    else if(variable == "genMatchedMotherIdReverse"){
3098      int index = getGenMatchedParticleIndex(object);
3099 <    if(index == -1) value = 23;
3100 <    else value = 23 -getPdgIdBinValue(mcparticles->at(index).motherId);
3099 >    if(index == -1) value = 24;
3100 >    else value = 24 -getPdgIdBinValue(mcparticles->at(index).motherId);
3101    }
3102    else if(variable == "genMatchedGrandmotherId"){
3103      int index = getGenMatchedParticleIndex(object);
# Line 2158 | Line 3109 | OSUAnalysis::valueLookup (const BNtrack*
3109      }
3110      else value = getPdgIdBinValue(mcparticles->at(index).grandMotherId);
3111    }
3112 +  else if(variable == "genMatchedGrandmotherIdReverse"){
3113 +    int index = getGenMatchedParticleIndex(object);
3114 +    if(index == -1) value = 24;
3115 +    else if(fabs(mcparticles->at(index).motherId) == 15){
3116 +      int motherIndex = findTauMotherIndex(&mcparticles->at(index));
3117 +      if(motherIndex == -1) value = 24;
3118 +      else value = 24 - getPdgIdBinValue(mcparticles->at(motherIndex).motherId);
3119 +    }
3120 +    else value = 24 - getPdgIdBinValue(mcparticles->at(index).grandMotherId);
3121 +  }
3122  
3123  
3124  
3125 <  else{std::cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
3125 >  else{clog << "WARNING: invalid track variable '" << variable << "'\n"; value = -999;}
3126  
3127    value = applyFunction(function, value);
3128  
3129    return value;
3130 < }
3130 > } // end track valueLookup
3131  
3132 +
3133 + //!genjet valueLookup
3134   double
3135 < OSUAnalysis::valueLookup (const BNgenjet* object, string variable, string function){
3135 > OSUAnalysis::valueLookup (const BNgenjet* object, string variable, string function, string &stringValue){
3136  
3137    double value = 0.0;
3138  
# Line 2189 | Line 3152 | OSUAnalysis::valueLookup (const BNgenjet
3152    else if(variable == "charge") value = object->charge;
3153  
3154  
3155 <  else{std::cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
3155 >  else{clog << "WARNING: invalid genjet variable '" << variable << "'\n"; value = -999;}
3156  
3157    value = applyFunction(function, value);
3158  
3159    return value;
3160   }
3161  
3162 + //!mcparticle valueLookup
3163   double
3164 < OSUAnalysis::valueLookup (const BNmcparticle* object, string variable, string function){
3164 > OSUAnalysis::valueLookup (const BNmcparticle* object, string variable, string function, string &stringValue){
3165  
3166    double value = 0.0;
3167  
# Line 2322 | Line 3286 | OSUAnalysis::valueLookup (const BNmcpart
3286    }
3287  
3288  
3289 <  else{std::cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
3289 >  else{clog << "WARNING: invalid mcparticle variable '" << variable << "'\n"; value = -999;}
3290  
3291    value = applyFunction(function, value);
3292  
3293    return value;
3294 < }
3294 > } // end mcparticle valueLookup
3295  
3296 +
3297 + //!primaryvertex valueLookup
3298   double
3299 < OSUAnalysis::valueLookup (const BNprimaryvertex* object, string variable, string function){
3299 > OSUAnalysis::valueLookup (const BNprimaryvertex* object, string variable, string function, string &stringValue){
3300  
3301    double value = 0.0;
3302  
# Line 2349 | Line 3315 | OSUAnalysis::valueLookup (const BNprimar
3315    else if(variable == "isGood") value = object->isGood;
3316  
3317  
3318 <  else{std::cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
3318 >  else{clog << "WARNING: invalid primaryvertex variable '" << variable << "'\n"; value = -999;}
3319  
3320    value = applyFunction(function, value);
3321  
3322    return value;
3323   }
3324  
3325 + //!bxlumi valueLookup
3326   double
3327 < OSUAnalysis::valueLookup (const BNbxlumi* object, string variable, string function){
3327 > OSUAnalysis::valueLookup (const BNbxlumi* object, string variable, string function, string &stringValue){
3328  
3329    double value = 0.0;
3330  
# Line 2366 | Line 3333 | OSUAnalysis::valueLookup (const BNbxlumi
3333    else if(variable == "bx_LUMI_now") value = object->bx_LUMI_now;
3334  
3335  
3336 <  else{std::cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
3336 >  else{clog << "WARNING: invalid bxlumi variable '" << variable << "'\n"; value = -999;}
3337  
3338    value = applyFunction(function, value);
3339  
3340    return value;
3341   }
3342  
3343 + //!photon valueLookup
3344   double
3345 < OSUAnalysis::valueLookup (const BNphoton* object, string variable, string function){
3345 > OSUAnalysis::valueLookup (const BNphoton* object, string variable, string function, string &stringValue){
3346  
3347    double value = 0.0;
3348  
# Line 2449 | Line 3417 | OSUAnalysis::valueLookup (const BNphoton
3417    else if(variable == "seedRecoFlag") value = object->seedRecoFlag;
3418  
3419  
2452
3420  
3421 <  else if(variable == "genDeltaRLowest") value = getGenDeltaRLowest(object);
3421 >
3422 >  else if(variable == "genDeltaRLowest") value = getGenDeltaRLowest(object);
3423  
3424    else if(variable == "genMatchedPdgId"){
3425      int index = getGenMatchedParticleIndex(object);
# Line 2473 | Line 3441 | OSUAnalysis::valueLookup (const BNphoton
3441    }
3442    else if(variable == "genMatchedMotherIdReverse"){
3443      int index = getGenMatchedParticleIndex(object);
3444 <    if(index == -1) value = 23;
3445 <    else value = 23 -getPdgIdBinValue(mcparticles->at(index).motherId);
3444 >    if(index == -1) value = 24;
3445 >    else value = 24 -getPdgIdBinValue(mcparticles->at(index).motherId);
3446    }
3447    else if(variable == "genMatchedGrandmotherId"){
3448      int index = getGenMatchedParticleIndex(object);
# Line 2486 | Line 3454 | OSUAnalysis::valueLookup (const BNphoton
3454      }
3455      else value = getPdgIdBinValue(mcparticles->at(index).grandMotherId);
3456    }
3457 +  else if(variable == "genMatchedGrandmotherIdReverse"){
3458 +    int index = getGenMatchedParticleIndex(object);
3459 +    if(index == -1) value = 24;
3460 +    else if(fabs(mcparticles->at(index).motherId) == 15){
3461 +      int motherIndex = findTauMotherIndex(&mcparticles->at(index));
3462 +      if(motherIndex == -1) value = 24;
3463 +      else value = 24 - getPdgIdBinValue(mcparticles->at(motherIndex).motherId);
3464 +    }
3465 +    else value = 24 - getPdgIdBinValue(mcparticles->at(index).grandMotherId);
3466 +  }
3467  
3468  
3469 <  else{std::cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
3469 >  else{clog << "WARNING: invalid photon variable '" << variable << "'\n"; value = -999;}
3470  
3471    value = applyFunction(function, value);
3472  
3473    return value;
3474 < }
3474 > } // end photon valueLookup
3475 >
3476  
3477 + //!supercluster valueLookup
3478   double
3479 < OSUAnalysis::valueLookup (const BNsupercluster* object, string variable, string function){
3479 > OSUAnalysis::valueLookup (const BNsupercluster* object, string variable, string function, string &stringValue){
3480  
3481    double value = 0.0;
3482  
# Line 2510 | Line 3490 | OSUAnalysis::valueLookup (const BNsuperc
3490    else if(variable == "theta") value = object->theta;
3491  
3492  
3493 <  else{std::cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
3493 >  else{clog << "WARNING: invalid supercluster variable '" << variable << "'\n"; value = -999;}
3494  
3495    value = applyFunction(function, value);
3496  
3497    return value;
3498   }
3499  
3500 + //!trigobj valueLookup
3501 + double
3502 + OSUAnalysis::valueLookup (const BNtrigobj* object, string variable, string function, string &stringValue){
3503 +
3504 +  double value = 0.0;
3505 +
3506 +  if(variable == "pt") value = object->pt;
3507 +  else if(variable == "eta") value = object->eta;
3508 +  else if(variable == "phi") value = object->phi;
3509 +  else if(variable == "px") value = object->px;
3510 +  else if(variable == "py") value = object->py;
3511 +  else if(variable == "pz") value = object->pz;
3512 +  else if(variable == "et") value = object->et;
3513 +  else if(variable == "energy") value = object->energy;
3514 +  else if(variable == "etTotal") value = object->etTotal;
3515 +  else if(variable == "id") value = object->id;
3516 +  else if(variable == "charge") value = object->charge;
3517 +  else if(variable == "isIsolated") value = object->isIsolated;
3518 +  else if(variable == "isMip") value = object->isMip;
3519 +  else if(variable == "isForward") value = object->isForward;
3520 +  else if(variable == "isRPC") value = object->isRPC;
3521 +  else if(variable == "bx") value = object->bx;
3522 +  else if(variable == "filter") {
3523 +    if ((stringValue = object->filter) == "")
3524 +      stringValue = "none";  // stringValue should only be empty if value is filled
3525 +  }
3526 +
3527 +  else{clog << "WARNING: invalid trigobj variable '" << variable << "'\n"; value = -999;}
3528 +
3529 +  value = applyFunction(function, value);
3530 +
3531 +  return value;
3532 + }
3533  
3534 + //!muon-muon pair valueLookup
3535   double
3536 < OSUAnalysis::valueLookup (const BNmuon* object1, const BNmuon* object2, string variable, string function){
3536 > OSUAnalysis::valueLookup (const BNmuon* object1, const BNmuon* object2, string variable, string function, string &stringValue){
3537  
3538    double value = 0.0;
3539  
# Line 2581 | Line 3595 | OSUAnalysis::valueLookup (const BNmuon*
3595        value = object2->correctedD0;
3596      }
3597  
3598 <  else{std::cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
3598 >  else{clog << "WARNING: invalid muon-muon pair variable '" << variable << "'\n"; value = -999;}
3599  
3600    value = applyFunction(function, value);
3601  
3602    return value;
3603 < }
3603 > } // end muon-muon pair valueLookup
3604 >
3605 >
3606 > //!muon-photon pair valueLookup
3607 > double
3608 > OSUAnalysis::valueLookup (const BNmuon* object1, const BNphoton* object2, string variable, string function, string &stringValue){
3609 >
3610 >  double value = 0.0;
3611 >
3612 >  if(variable == "deltaPhi") value = fabs(deltaPhi(object1->phi,object2->phi));
3613 >  else if(variable == "deltaEta") value = fabs(object1->eta - object2->eta);
3614 >  else if(variable == "photonEta") value = object2->eta;
3615 >  else if(variable == "photonPt") value = object2->pt;
3616 >  else if(variable == "muonEta") value = object1->eta;
3617 >  else if(variable == "photonPhi") value = object2->phi;
3618 >  else if(variable == "muonPhi") value = object1->phi;
3619 >  else if(variable == "deltaR") value = deltaR(object1->eta,object1->phi,object2->eta,object2->phi);
3620 >  else if(variable == "photonGenMotherId") value = object2->genMotherId;
3621 >  else if(variable == "muonRelPFdBetaIso") value = (object1->pfIsoR04SumChargedHadronPt + max(0.0, object1->pfIsoR04SumNeutralHadronEt + object1->pfIsoR04SumPhotonEt - 0.5*object1->pfIsoR04SumPUPt)) / object1->pt;
3622 >  else if(variable == "invMass"){
3623 >    TLorentzVector fourVector1(object1->px, object1->py, object1->pz, object1->energy);
3624 >    TLorentzVector fourVector2(object2->px, object2->py, object2->pz, object2->energy);
3625 >    value = (fourVector1 + fourVector2).M();
3626 >  }
3627 >  else if(variable == "pt"){
3628 >    TLorentzVector fourVector1(object1->px, object1->py, object1->pz, object1->energy);
3629 >    TLorentzVector fourVector2(object2->px, object2->py, object2->pz, object2->energy);
3630 >    value = (fourVector1 + fourVector2).Pt();
3631 >  }
3632 >  else if(variable == "threeDAngle")
3633 >    {
3634 >      TVector3 threeVector1(object1->px, object1->py, object1->pz);
3635 >      TVector3 threeVector2(object2->px, object2->py, object2->pz);
3636 >      value = (threeVector1.Angle(threeVector2));
3637 >    }
3638 >  else if(variable == "alpha")
3639 >    {
3640 >      static const double pi = 3.1415926535897932384626433832795028841971693993751058;
3641 >      TVector3 threeVector1(object1->px, object1->py, object1->pz);
3642 >      TVector3 threeVector2(object2->px, object2->py, object2->pz);
3643 >      value = (pi-threeVector1.Angle(threeVector2));
3644 >    }
3645 >  else{clog << "WARNING: invalid muon-photon pair variable '" << variable << "'\n"; value = -999;}
3646 >
3647 >  value = applyFunction(function, value);
3648  
3649 +  return value;
3650 + } // end muon-photon pair valueLookup
3651 +
3652 +
3653 + //!electron-photon pair valueLookup
3654   double
3655 < OSUAnalysis::valueLookup (const BNelectron* object1, const BNelectron* object2, string variable, string function){
3655 > OSUAnalysis::valueLookup (const BNelectron* object1, const BNphoton* object2, string variable, string function, string &stringValue){
3656 >
3657 >  double value = 0.0;
3658 >
3659 >  if(variable == "deltaPhi") value = fabs(deltaPhi(object1->phi,object2->phi));
3660 >  else if(variable == "deltaEta") value = fabs(object1->eta - object2->eta);
3661 >  else if(variable == "photonEta") value = object2->eta;
3662 >  else if(variable == "photonPt") value = object2->pt;
3663 >  else if(variable == "electronEta") value = object1->eta;
3664 >  else if(variable == "photonPhi") value = object2->phi;
3665 >  else if(variable == "electronPhi") value = object1->phi;
3666 >  else if(variable == "deltaR") value = deltaR(object1->eta,object1->phi,object2->eta,object2->phi);
3667 >  else if(variable == "photonGenMotherId") value = object2->genMotherId;
3668 >  else if(variable == "electronRelPFrhoIso") value = ( object1->chargedHadronIsoDR03 + max(0.0, object1->neutralHadronIsoDR03 + object1->photonIsoDR03 - object1->AEffDr03*object1->rhoPrime) ) / object1->pt;
3669 >  else if(variable == "invMass"){
3670 >    TLorentzVector fourVector1(object1->px, object1->py, object1->pz, object1->energy);
3671 >    TLorentzVector fourVector2(object2->px, object2->py, object2->pz, object2->energy);
3672 >    value = (fourVector1 + fourVector2).M();
3673 >  }
3674 >  else if(variable == "pt"){
3675 >    TLorentzVector fourVector1(object1->px, object1->py, object1->pz, object1->energy);
3676 >    TLorentzVector fourVector2(object2->px, object2->py, object2->pz, object2->energy);
3677 >    value = (fourVector1 + fourVector2).Pt();
3678 >  }
3679 >  else if(variable == "threeDAngle")
3680 >    {
3681 >      TVector3 threeVector1(object1->px, object1->py, object1->pz);
3682 >      TVector3 threeVector2(object2->px, object2->py, object2->pz);
3683 >      value = (threeVector1.Angle(threeVector2));
3684 >    }
3685 >  else if(variable == "alpha")
3686 >    {
3687 >      static const double pi = 3.1415926535897932384626433832795028841971693993751058;
3688 >      TVector3 threeVector1(object1->px, object1->py, object1->pz);
3689 >      TVector3 threeVector2(object2->px, object2->py, object2->pz);
3690 >      value = (pi-threeVector1.Angle(threeVector2));
3691 >    }
3692 >  else{clog << "WARNING: invalid electron-photon pair variable '" << variable << "'\n"; value = -999;}
3693 >
3694 >  value = applyFunction(function, value);
3695 >
3696 >  return value;
3697 > } // end electron-photon pair valueLookup
3698 >
3699 >
3700 > //!electron-electron pair valueLookup
3701 > double
3702 > OSUAnalysis::valueLookup (const BNelectron* object1, const BNelectron* object2, string variable, string function, string &stringValue){
3703  
3704    double value = 0.0;
3705  
# Line 2636 | Line 3746 | OSUAnalysis::valueLookup (const BNelectr
3746      value = object2->correctedD0;
3747    }
3748  
3749 <  else{std::cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
3749 >  else{clog << "WARNING: invalid electron-electron pair variable '" << variable << "'\n"; value = -999;}
3750  
3751    value = applyFunction(function, value);
3752  
3753    return value;
3754 < }
3754 > } // end electron-electron pair valueLookup
3755  
3756 +
3757 + //!electron-muon pair valueLookup
3758   double
3759 < OSUAnalysis::valueLookup (const BNelectron* object1, const BNmuon* object2, string variable, string function){
3759 > OSUAnalysis::valueLookup (const BNelectron* object1, const BNmuon* object2, string variable, string function, string &stringValue){
3760  
3761    double value = 0.0;
3762  
# Line 2702 | Line 3814 | OSUAnalysis::valueLookup (const BNelectr
3814    else if(variable == "muonRelPFdBetaIso"){
3815      value = (object2->pfIsoR04SumChargedHadronPt + max(0.0, object2->pfIsoR04SumNeutralHadronEt + object2->pfIsoR04SumPhotonEt - 0.5*object2->pfIsoR04SumPUPt)) / object2->pt;
3816    }
3817 +  else{clog << "WARNING: invalid electron-muon pair variable '" << variable << "'\n"; value = -999;}
3818 +  value = applyFunction(function, value);
3819 +
3820 +  return value;
3821 + } // end electron-muon pair valueLookup
3822  
3823 <  else{std::cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
3823 >
3824 > //!electron-jet pair valueLookup
3825 > double
3826 > OSUAnalysis::valueLookup (const BNelectron* object1, const BNjet* object2, string variable, string function, string &stringValue){
3827  
3828 +  double value = 0.0;
3829 +
3830 +  if(variable == "deltaPhi") value = fabs(deltaPhi(object1->phi,object2->phi));
3831 +  else if(variable == "deltaEta") value = fabs(object1->eta - object2->eta);
3832 +  else if(variable == "jetEta") value = object2->eta;
3833 +  else if(variable == "jetPhi") value = object2->phi;
3834 +  else if(variable == "electronEta") value = object1->eta;
3835 +  else if(variable == "electronPhi") value = object1->phi;
3836 +  else if(variable == "deltaR") value = deltaR(object1->eta,object1->phi,object2->eta,object2->phi);
3837 +  else if(variable == "invMass"){
3838 +    TLorentzVector fourVector1(object1->px, object1->py, object1->pz, object1->energy);
3839 +    TLorentzVector fourVector2(object2->px, object2->py, object2->pz, object2->energy);
3840 +    value = (fourVector1 + fourVector2).M();
3841 +  }
3842 +  else if(variable == "pt"){
3843 +    TLorentzVector fourVector1(object1->px, object1->py, object1->pz, object1->energy);
3844 +    TLorentzVector fourVector2(object2->px, object2->py, object2->pz, object2->energy);
3845 +    value = (fourVector1 + fourVector2).Pt();
3846 +  }
3847 +  else if(variable == "threeDAngle")
3848 +    {
3849 +      TVector3 threeVector1(object1->px, object1->py, object1->pz);
3850 +      TVector3 threeVector2(object2->px, object2->py, object2->pz);
3851 +      value = (threeVector1.Angle(threeVector2));
3852 +    }
3853 +  else if(variable == "chargeProduct"){
3854 +    value = object1->charge*object2->charge;
3855 +  }
3856 +
3857 +  else{clog << "WARNING: invalid electron-jet pair variable '" << variable << "'\n"; value = -999;}
3858 +  value = applyFunction(function, value);
3859 +
3860 +  return value;
3861 + }
3862 +
3863 + //!electron-mcparticle pair valueLookup
3864 + double
3865 + OSUAnalysis::valueLookup (const BNelectron* object1, const BNmcparticle* object2, string variable, string function, string &stringValue){
3866 +
3867 +  double value = 0.0;
3868 +
3869 +  if(variable == "deltaPhi") value = fabs(deltaPhi(object1->phi,object2->phi));
3870 +  else if(variable == "deltaEta") value = fabs(object1->eta - object2->eta);
3871 +  else if(variable == "deltaR") value = deltaR(object1->eta,object1->phi,object2->eta,object2->phi);
3872 +  else if(variable == "threeDAngle")
3873 +    {
3874 +      TVector3 threeVector1(object1->px, object1->py, object1->pz);
3875 +      TVector3 threeVector2(object2->px, object2->py, object2->pz);
3876 +      value = (threeVector1.Angle(threeVector2));
3877 +    }
3878 +  else if(variable == "chargeProduct"){
3879 +    value = object1->charge*object2->charge;
3880 +  }
3881 +
3882 +  else{clog << "WARNING: invalid electron-mcparticle variable '" << variable << "'\n"; value = -999;}
3883    value = applyFunction(function, value);
3884  
3885    return value;
3886   }
3887  
3888  
3889 < double  
3890 < OSUAnalysis::valueLookup (const BNelectron* object1, const BNtrack* object2, string variable, string function){  
3891 <  double electronMass = 0.000511;        
3892 <  double value = 0.0;    
3893 <  TLorentzVector fourVector1(0, 0, 0, 0);        
3894 <  TLorentzVector fourVector2(0, 0, 0, 0);        
3895 <  if(variable == "deltaPhi") value = fabs(deltaPhi(object1->phi,object2->phi));  
3889 > //!photon-jet pair valueLookup
3890 > double
3891 > OSUAnalysis::valueLookup (const BNphoton* object1, const BNjet* object2, string variable, string function, string &stringValue){
3892 >
3893 >  double value = 0.0;
3894 >
3895 >  if(variable == "deltaPhi") value = fabs(deltaPhi(object1->phi,object2->phi));
3896    else if(variable == "deltaEta") value = fabs(object1->eta - object2->eta);
3897 <  else if(variable == "deltaR") value = deltaR(object1->eta,object1->phi,object2->eta,object2->phi);    
3898 <  else if(variable == "invMass"){        
3899 <    fourVector1.SetPtEtaPhiM(object1->pt, object1->eta, object1->phi, electronMass);    
3900 <    fourVector2.SetPtEtaPhiM(object2->pt, object2->eta, object2->phi, electronMass );    
3901 <        
3902 <    value = (fourVector1 + fourVector2).M();    
3897 >  else if(variable == "jetEta") value = object2->eta;
3898 >  else if(variable == "jetPhi") value = object2->phi;
3899 >  else if(variable == "photonEta") value = object1->eta;
3900 >  else if(variable == "photonPhi") value = object1->phi;
3901 >  else if(variable == "photonGenMotherId") value = object1->genMotherId;
3902 >  else if(variable == "deltaR") value = deltaR(object1->eta,object1->phi,object2->eta,object2->phi);
3903 >  else if(variable == "invMass"){
3904 >    TLorentzVector fourVector1(object1->px, object1->py, object1->pz, object1->energy);
3905 >    TLorentzVector fourVector2(object2->px, object2->py, object2->pz, object2->energy);
3906 >    value = (fourVector1 + fourVector2).M();
3907 >  }
3908 >  else if(variable == "pt"){
3909 >    TLorentzVector fourVector1(object1->px, object1->py, object1->pz, object1->energy);
3910 >    TLorentzVector fourVector2(object2->px, object2->py, object2->pz, object2->energy);
3911 >    value = (fourVector1 + fourVector2).Pt();
3912 >  }
3913 >  else if(variable == "threeDAngle")
3914 >    {
3915 >      TVector3 threeVector1(object1->px, object1->py, object1->pz);
3916 >      TVector3 threeVector2(object2->px, object2->py, object2->pz);
3917 >      value = (threeVector1.Angle(threeVector2));
3918 >    }
3919 >  else{clog << "WARNING: invalid photon-jet pair variable '" << variable << "'\n"; value = -999;}
3920 >  value = applyFunction(function, value);
3921 >
3922 >  return value;
3923 > }
3924 >
3925 > // track-jet pair valueLookup
3926 > double
3927 > OSUAnalysis::valueLookup (const BNtrack* object1, const BNjet* object2, string variable, string function, string &stringValue){
3928 >
3929 >  double value = 0.0;
3930 >
3931 >  if(variable == "deltaPhi") value = fabs(deltaPhi(object1->phi,object2->phi));
3932 >  else if(variable == "deltaR") value = deltaR(object1->eta,object1->phi,object2->eta,object2->phi);
3933 >
3934 >  else{clog << "WARNING: invalid track-jet pair variable '" << variable << "'\n"; value = -999;}
3935 >  value = applyFunction(function, value);
3936 >
3937 >  return value;
3938 >
3939 > }
3940 >
3941 >
3942 >
3943 > // met-jet pair valueLookup
3944 > double
3945 > OSUAnalysis::valueLookup (const BNmet* object1, const BNjet* object2, string variable, string function, string &stringValue){
3946 >
3947 >  double value = 0.0;
3948 >
3949 >  if(variable == "deltaPhi") value = fabs(deltaPhi(object1->phi,object2->phi));
3950 >
3951 >  else{clog << "WARNING: invalid met-jet pair variable '" << variable << "'\n"; value = -999;}
3952 >  value = applyFunction(function, value);
3953 >
3954 >  return value;
3955 >
3956 > }  
3957 >
3958 >
3959 >
3960 > //!muon-jet pair valueLookup
3961 > double
3962 > OSUAnalysis::valueLookup (const BNmuon* object1, const BNjet* object2, string variable, string function, string &stringValue){
3963 >
3964 >  double value = 0.0;
3965 >
3966 >  if(variable == "deltaPhi") value = fabs(deltaPhi(object1->phi,object2->phi));
3967 >  else if(variable == "jetEta") value = object2->eta;
3968 >  else if(variable == "relPFdBetaIso") value = (object1->pfIsoR04SumChargedHadronPt + max(0.0, object1->pfIsoR04SumNeutralHadronEt + object1->pfIsoR04SumPhotonEt - 0.5*object1->pfIsoR04SumPUPt)) / object1->pt;
3969 >  else if(variable == "jetPt") value = object2->pt;
3970 >  else if(variable == "jetPhi") value = object2->phi;
3971 >  else if(variable == "deltaPt") value = object1->pt - object2->pt;
3972 >  else if(variable == "muonEta") value = object1->eta;
3973 >  else if(variable == "muonPt") value = object1->pt;
3974 >  else if(variable == "muonPhi") value = object1->phi;
3975 >  else if(variable == "deltaEta") value = fabs(object1->eta - object2->eta);          
3976 >  else if(variable == "deltaR") value = deltaR(object1->eta,object1->phi,object2->eta,object2->phi);
3977 >  else if(variable == "invMass"){
3978 >    TLorentzVector fourVector1(object1->px, object1->py, object1->pz, object1->energy);
3979 >    TLorentzVector fourVector2(object2->px, object2->py, object2->pz, object2->energy);
3980 >    value = (fourVector1 + fourVector2).M();
3981 >  }
3982 >  else if(variable == "pt"){
3983 >    TLorentzVector fourVector1(object1->px, object1->py, object1->pz, object1->energy);
3984 >    TLorentzVector fourVector2(object2->px, object2->py, object2->pz, object2->energy);
3985 >    value = (fourVector1 + fourVector2).Pt();
3986    }
3987 <  else{std::cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}  
3988 <  value = applyFunction(function, value);        
3989 <  return value;  
3987 >  else if(variable == "threeDAngle")
3988 >    {
3989 >      TVector3 threeVector1(object1->px, object1->py, object1->pz);
3990 >      TVector3 threeVector2(object2->px, object2->py, object2->pz);
3991 >      value = (threeVector1.Angle(threeVector2));
3992 >    }
3993 >  else if(variable == "chargeProduct"){
3994 >    value = object1->charge*object2->charge;
3995 >  }
3996 >
3997 >  else{clog << "WARNING: invalid muon-jet pair variable '" << variable << "'\n"; value = -999;}
3998 >  value = applyFunction(function, value);
3999 >
4000 >  return value;
4001 > } // end muon-jet pair valueLookup
4002 >
4003 >
4004 > //!muon-event valueLookup
4005 > double
4006 > OSUAnalysis::valueLookup (const BNmuon* object1, const BNevent* object2, string variable, string function, string &stringValue){
4007 >
4008 >  double value = 0.0;
4009 >
4010 >  if(variable == "muonEta") value = object1->eta;
4011 >  else if(variable == "muonPt") value = object1->pt;
4012 >  else if(variable == "muonPhi") value = object1->phi;
4013 >  else if(variable == "Ht") value = getHt(jets.product());
4014 >  else if(variable == "pthat")   value = object2->pthat;
4015 >  else if(variable == "relPFdBetaIso") value = (object1->pfIsoR04SumChargedHadronPt + max(0.0, object1->pfIsoR04SumNeutralHadronEt + object1->pfIsoR04SumPhotonEt - 0.5*object1->pfIsoR04SumPUPt)) / object1->pt;
4016 >  else{clog << "WARNING: invalid muon-event pair variable '" << variable << "'\n"; value = -999;}
4017 >  value = applyFunction(function, value);
4018 >
4019 >  return value;
4020   }
4021 + //!jet-jet pair valueLookup
4022 + double
4023 + OSUAnalysis::valueLookup (const BNjet* object1, const BNjet* object2, string variable, string function, string &stringValue){
4024 +
4025 +  double value = 0.0;
4026 +
4027 +  if(variable == "deltaPhi") value = fabs(deltaPhi(object1->phi,object2->phi));
4028 +  else if(variable == "deltaEta") value = fabs(object1->eta - object2->eta);
4029 +  else if(variable == "deltaPt") value = object1->pt - object2->pt;
4030 +  else if(variable == "deltaR") value = deltaR(object1->eta,object1->phi,object2->eta,object2->phi);
4031 +  else if(variable == "invMass"){
4032 +    TLorentzVector fourVector1(object1->px, object1->py, object1->pz, object1->energy);
4033 +    TLorentzVector fourVector2(object2->px, object2->py, object2->pz, object2->energy);
4034 +    value = (fourVector1 + fourVector2).M();
4035 +  }
4036 +  else if(variable == "pt"){
4037 +    TLorentzVector fourVector1(object1->px, object1->py, object1->pz, object1->energy);
4038 +    TLorentzVector fourVector2(object2->px, object2->py, object2->pz, object2->energy);
4039 +    value = (fourVector1 + fourVector2).Pt();
4040 +  }
4041 +  else if(variable == "threeDAngle")
4042 +    {
4043 +      TVector3 threeVector1(object1->px, object1->py, object1->pz);
4044 +      TVector3 threeVector2(object2->px, object2->py, object2->pz);
4045 +      value = (threeVector1.Angle(threeVector2));
4046 +    }
4047 +  else if(variable == "chargeProduct"){
4048 +    value = object1->charge*object2->charge;
4049 +  }
4050  
4051 +  else{clog << "WARNING: invalid jet-jet pair variable '" << variable << "'\n"; value = -999;}
4052 +  value = applyFunction(function, value);
4053  
4054 +  return value;
4055 + }
4056  
4057 + //!electron-track pair valueLookup
4058   double
4059 < OSUAnalysis::valueLookup (const BNmuon* object1, const BNtrack* object2, string variable, string function){
4060 <  double pionMass = 0.140;
2739 <  double muonMass = 0.106;
4059 > OSUAnalysis::valueLookup (const BNelectron* object1, const BNtrack* object2, string variable, string function, string &stringValue){
4060 >  double electronMass = 0.000511;
4061    double value = 0.0;
4062    TLorentzVector fourVector1(0, 0, 0, 0);
4063    TLorentzVector fourVector2(0, 0, 0, 0);
4064    if(variable == "deltaPhi") value = fabs(deltaPhi(object1->phi,object2->phi));
4065    else if(variable == "deltaEta") value = fabs(object1->eta - object2->eta);
4066    else if(variable == "deltaR") value = deltaR(object1->eta,object1->phi,object2->eta,object2->phi);
4067 +  else if(variable == "deltaRLooseMvaId") {
4068 +    // only consider electrons that pass "loose MVA id", i.e., mvaNonTrigV0 > 0;
4069 +    // otherwise return very large value (99)  
4070 +    if (object1->mvaNonTrigV0>0) value = deltaR(object1->eta,object1->phi,object2->eta,object2->phi);
4071 +    else                         value = 99.;  
4072 +  }
4073 +  else if(variable == "invMass"){
4074 +    fourVector1.SetPtEtaPhiM(object1->pt, object1->eta, object1->phi, electronMass);
4075 +    fourVector2.SetPtEtaPhiM(object2->pt, object2->eta, object2->phi, electronMass );
4076 +
4077 +    value = (fourVector1 + fourVector2).M();
4078 +  }
4079 +  else if(variable == "chargeProduct"){
4080 +    value = object1->charge*object2->charge;
4081 +  }
4082 +  else{clog << "WARNING: invalid electron-track pair variable '" << variable << "'\n"; value = -999;}
4083 +  value = applyFunction(function, value);
4084 +  return value;
4085 +
4086 + }
4087 +
4088 +
4089 + //!muon-track pair valueLookup
4090 + double
4091 + OSUAnalysis::valueLookup (const BNmuon* object1, const BNtrack* object2, string variable, string function, string &stringValue){
4092 +  double value = 0.0;
4093 +  if(variable == "deltaPhi") value = fabs(deltaPhi(object1->phi,object2->phi));
4094 +  else if(variable == "deltaEta") value = fabs(object1->eta - object2->eta);
4095 +  else if(variable == "deltaR") value = deltaR(object1->eta,object1->phi,object2->eta,object2->phi);
4096 +  else if(variable == "deltaRLooseID") {
4097 +    // only consider muons that pass looseId criteria; otherwise return very large value (99.)  
4098 +    string empty = "";  
4099 +    double isLooseId = valueLookup(object1, "looseID", "", empty);    
4100 +    if (isLooseId) value = deltaR(object1->eta,object1->phi,object2->eta,object2->phi);
4101 +    else           value = 99.;  
4102 +  }
4103 +  else if(variable == "deltaRGlobalMuon") {
4104 +    // only consider muons that pass looseId criteria; otherwise return very large value (99.)  
4105 +    if (object1->isGlobalMuon) value = deltaR(object1->eta,object1->phi,object2->eta,object2->phi);
4106 +    else                       value = 99.;  
4107 +  }
4108    else if(variable == "invMass"){
4109 +    double pionMass = 0.140;
4110 +    double muonMass = 0.106;
4111 +    TLorentzVector fourVector1(0, 0, 0, 0);
4112 +    TLorentzVector fourVector2(0, 0, 0, 0);
4113      fourVector1.SetPtEtaPhiM(object1->pt, object1->eta, object1->phi, muonMass);
4114      fourVector2.SetPtEtaPhiM(object2->pt, object2->eta, object2->phi, pionMass );
2749
4115      value = (fourVector1 + fourVector2).M();
4116    }
4117 +  else if(variable == "chargeProduct"){
4118 +    value = object1->charge*object2->charge;
4119 +  }
4120  
4121 <  else{std::cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
4121 >  else{clog << "WARNING: invalid muon-track pair variable '" << variable << "'\n"; value = -999;}
4122    value = applyFunction(function, value);
4123    return value;
4124   }
4125  
4126 <
4126 > //!tau-tau pair valueLookup
4127   double
4128 < OSUAnalysis::valueLookup (const BNtau* object1, const BNtau* object2, string variable, string function){
4128 > OSUAnalysis::valueLookup (const BNtau* object1, const BNtau* object2, string variable, string function, string &stringValue){
4129    double value = 0.0;
4130    if(variable == "deltaPhi") value = fabs(deltaPhi(object1->phi,object2->phi));
4131    else if(variable == "deltaEta") value = fabs(object1->eta - object2->eta);
# Line 2768 | Line 4136 | OSUAnalysis::valueLookup (const BNtau* o
4136      value = (fourVector1 + fourVector2).M();
4137    }
4138  
4139 <  else{std::cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
4139 >  else if(variable == "chargeProduct"){
4140 >    value = object1->charge*object2->charge;
4141 >  }
4142 >
4143 >  else{clog << "WARNING: invalid tau-tau pair variable '" << variable << "'\n"; value = -999;}
4144    value = applyFunction(function, value);
4145    return value;
4146   }
4147  
4148 <
4148 > //!muon-tau pair valueLookup
4149   double
4150 < OSUAnalysis::valueLookup (const BNmuon* object1, const BNtau* object2, string variable, string function){
4150 > OSUAnalysis::valueLookup (const BNmuon* object1, const BNtau* object2, string variable, string function, string &stringValue){
4151    double value = 0.0;
4152    if(variable == "deltaPhi") value = fabs(deltaPhi(object1->phi,object2->phi));
4153    else if(variable == "deltaEta") value = fabs(object1->eta - object2->eta);
# Line 2786 | Line 4158 | OSUAnalysis::valueLookup (const BNmuon*
4158      value = (fourVector1 + fourVector2).M();
4159    }
4160  
4161 <  else{std::cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
4161 >  else if(variable == "chargeProduct"){
4162 >    value = object1->charge*object2->charge;
4163 >  }
4164 >
4165 >  else{clog << "WARNING: invalid muon-tau pair variable '" << variable << "'\n"; value = -999;}
4166    value = applyFunction(function, value);
4167    return value;
4168   }
4169  
4170 + //!tau-track pair valueLookup
4171   double
4172 < OSUAnalysis::valueLookup (const BNtau* object1, const BNtrack* object2, string variable, string function){
4172 > OSUAnalysis::valueLookup (const BNtau* object1, const BNtrack* object2, string variable, string function, string &stringValue){
4173    double value = 0.0;
4174    if(variable == "deltaPhi") value = fabs(deltaPhi(object1->phi,object2->phi));
4175    else if(variable == "deltaR") value = deltaR(object1->eta,object1->phi,object2->eta,object2->phi);
4176 +  else if(variable == "deltaRLooseHadronicID") {
4177 +    // only consider tau's that pass the loose hadronic ID criteria; otherwise return very large value (99)  
4178 +    string empty = "";  
4179 +    double isLooseHadronicID = valueLookup(object1, "looseHadronicID", "", empty);    
4180 +  
4181 +    if (isLooseHadronicID) value = deltaR(object1->eta,object1->phi,object2->eta,object2->phi);
4182 +    else                   value = 99.;  
4183 +  }
4184 +  else if(variable == "deltaEta") value = fabs(object1->eta - object2->eta);
4185 +  else if(variable == "invMass"){
4186 +    double tauMass = 1.777;  // PDG 2010
4187 +    double pionMass = 0.140; // PDG 2010  
4188 +    TLorentzVector fourVector1(0, 0, 0, 0);
4189 +    TLorentzVector fourVector2(0, 0, 0, 0);
4190 +    fourVector1.SetPtEtaPhiM(object1->pt, object1->eta, object1->phi, tauMass);
4191 +    fourVector2.SetPtEtaPhiM(object2->pt, object2->eta, object2->phi, pionMass );
4192 +    value = (fourVector1 + fourVector2).M();
4193 +  }
4194 +  else if(variable == "chargeProduct"){
4195 +    value = object1->charge*object2->charge;
4196 +  }
4197  
4198 <  else{std::cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
4198 >  else{clog << "WARNING: invalid tau-track pair variable '" << variable << "'\n"; value = -999;}
4199    value = applyFunction(function, value);
4200    return value;
4201   }
4202  
4203  
4204 <
4204 > //!track-event pair valueLookup
4205   double
4206 < OSUAnalysis::valueLookup (const BNtrack* object1, const BNevent* object2, string variable, string function){
4206 > OSUAnalysis::valueLookup (const BNtrack* object1, const BNevent* object2, string variable, string function, string &stringValue){
4207  
4208    double value = 0.0;
4209    double pMag = sqrt(object1->pt * object1->pt +
4210 <                     object1->pz * object1->pz);  
4210 >                     object1->pz * object1->pz);
4211  
4212    if      (variable == "numPV")                      value = object2->numPV;
4213    else if (variable == "caloTotDeltaRp5")            value =  (object1->caloHadDeltaRp5 + object1->caloEMDeltaRp5);
4214    else if (variable == "caloTotDeltaRp5ByP")         value = ((object1->caloHadDeltaRp5 + object1->caloEMDeltaRp5)/pMag);
4215 <  else if (variable == "caloTotDeltaRp5_RhoCorr")    value = getTrkCaloTotRhoCorr(object1);  
4216 <  else if (variable == "caloTotDeltaRp5ByP_RhoCorr") value = getTrkCaloTotRhoCorr(object1) / pMag;  
4215 >  else if (variable == "caloTotDeltaRp5_RhoCorr")    value = getTrkCaloTotRhoCorr(object1);
4216 >  else if (variable == "caloTotDeltaRp5ByP_RhoCorr") value = getTrkCaloTotRhoCorr(object1) / pMag;
4217  
4218 <  else { std::cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999; }
4218 >  else { clog << "WARNING: invalid track-event pair variable '" << variable << "'\n"; value = -999; }
4219  
4220    value = applyFunction(function, value);
4221  
4222    return value;
4223  
4224 < }  
4224 > }
4225 >
4226 > //!electron-trigobj pair valueLookup
4227 > double
4228 > OSUAnalysis::valueLookup (const BNelectron* object1, const BNtrigobj* object2, string variable, string function, string &stringValue){
4229 >
4230 >  double value = 0.0;
4231 >
4232 >  if (variable == "deltaR") value = deltaR(object1->eta,object1->phi,object2->eta,object2->phi);
4233 >  else if (variable == "match"){
4234 >    if (deltaR(object1->eta,object1->phi,object2->eta,object2->phi) < 0.2 && abs(object2->id) == 11)
4235 >      stringValue = object2->filter;
4236 >    else
4237 >      stringValue = "none";
4238 >  }
4239 >
4240 >  else { clog << "WARNING: invalid electron-trigobj variable '" << variable << "'\n"; value = -999; }
4241 >
4242 >  value = applyFunction(function, value);
4243 >
4244 >  return value;
4245 >
4246 > }
4247 >
4248 > //!muon-trigobj pair valueLookup
4249 > double
4250 > OSUAnalysis::valueLookup (const BNmuon* object1, const BNtrigobj* object2, string variable, string function, string &stringValue){
4251 >
4252 >  double value = 0.0;
4253 >
4254 >  if (variable == "deltaR") value = deltaR(object1->eta,object1->phi,object2->eta,object2->phi);
4255 >
4256 >  else { clog << "WARNING: invalid muon-trigobj variable '" << variable << "'\n"; value = -999; }
4257 >
4258 >  value = applyFunction(function, value);
4259 >
4260 >  return value;
4261 >
4262 > }
4263 >
4264 > //!stop valueLookup
4265 > double
4266 > OSUAnalysis::valueLookup (const BNstop* object, string variable, string function, string &stringValue){
4267 >
4268 >
4269 >  double value = 0.0;
4270 >
4271 >  if(variable == "ctau") value = object->ctau;
4272 >
4273 >  else if (variable == "d0"){
4274 >    double vx = object->vx - chosenVertex ()->x,
4275 >      vy = object->vy - chosenVertex ()->y,
4276 >      px = object->px,
4277 >      py = object->py,
4278 >      pt = object->pt;
4279 >    value = (-vx * py + vy * px) / pt;
4280 >  }
4281 >
4282 >  else if (variable == "dz"){
4283 >    double vx = object->vx - chosenVertex ()->x,
4284 >      vy = object->vy - chosenVertex ()->y,
4285 >      vz = object->vz - chosenVertex ()->z,
4286 >      px = object->px,
4287 >      py = object->py,
4288 >      pz = object->pz,
4289 >      pt = object->pt;
4290 >    value = vz - (vx * px + vy * py)/pt * (pz/pt);
4291 >  }
4292 >
4293 >  else if (variable == "minD0"){
4294 >    double minD0=999;
4295 >    for(BNprimaryvertexCollection::const_iterator vertex = primaryvertexs->begin (); vertex != primaryvertexs->end (); vertex++){
4296 >      double vx = object->vx - vertex->x,
4297 >        vy = object->vy - vertex->y,
4298 >        px = object->px,
4299 >        py = object->py,
4300 >        pt = object->pt;
4301 >      value = (-vx * py + vy * px) / pt;
4302 >      if(abs(value) < abs(minD0)) minD0 = value;
4303 >    }
4304 >    value = minD0;
4305 >  }
4306 >  else if (variable == "minDz"){
4307 >    double minDz=999;
4308 >    for(BNprimaryvertexCollection::const_iterator vertex = primaryvertexs->begin (); vertex != primaryvertexs->end (); vertex++){
4309 >      double vx = object->vx - vertex->x,
4310 >        vy = object->vy - vertex->y,
4311 >        vz = object->vz - vertex->z,
4312 >        px = object->px,
4313 >        py = object->py,
4314 >        pz = object->pz,
4315 >        pt = object->pt;
4316 >      value = vz - (vx * px + vy * py)/pt * (pz/pt);
4317 >      if(abs(value) < abs(minDz)) minDz = value;
4318 >    }
4319 >    value = minDz;
4320 >  }
4321 >  else if(variable == "distToVertex"){
4322 >    value = sqrt((object->vx-chosenVertex()->x)*(object->vx-chosenVertex()->x) + \
4323 >                 (object->vy-chosenVertex()->y)*(object->vy-chosenVertex()->y) + \
4324 >                 (object->vz-chosenVertex()->z)*(object->vz-chosenVertex()->z));
4325 >  }
4326 >  else if (variable == "minDistToVertex"){
4327 >    double minDistToVertex=999;
4328 >    for(BNprimaryvertexCollection::const_iterator vertex = primaryvertexs->begin (); vertex != primaryvertexs->end (); vertex++){
4329 >      value = sqrt((object->vx-vertex->x)*(object->vx-vertex->x) + \
4330 >                   (object->vy-vertex->y)*(object->vy-vertex->y) + \
4331 >                   (object->vz-vertex->z)*(object->vz-vertex->z));
4332 >
4333 >      if(abs(value) < abs(minDistToVertex)) minDistToVertex = value;
4334 >    }
4335 >    value = minDistToVertex;
4336 >  }
4337 >  else if (variable == "distToVertexDifference"){
4338 >    double minDistToVertex=999;
4339 >    for(BNprimaryvertexCollection::const_iterator vertex = primaryvertexs->begin (); vertex != primaryvertexs->end (); vertex++){
4340 >      value = sqrt((object->vx-vertex->x)*(object->vx-vertex->x) + \
4341 >                   (object->vy-vertex->y)*(object->vy-vertex->y) + \
4342 >                   (object->vz-vertex->z)*(object->vz-vertex->z));
4343 >
4344 >      if(abs(value) < abs(minDistToVertex)) minDistToVertex = value;
4345 >    }
4346 >    double distToChosenVertex = sqrt((object->vx-chosenVertex()->x)*(object->vx-chosenVertex()->x) + \
4347 >                                     (object->vy-chosenVertex()->y)*(object->vy-chosenVertex()->y) + \
4348 >                                     (object->vz-chosenVertex()->z)*(object->vz-chosenVertex()->z));
4349 >
4350 >    value = distToChosenVertex - minDistToVertex;
4351 >  }
4352 >
4353 >  else if (variable == "closestVertexRank"){
4354 >    double minDistToVertex=999;
4355 >    int vertex_rank = 0;
4356 >    for(BNprimaryvertexCollection::const_iterator vertex = primaryvertexs->begin (); vertex != primaryvertexs->end (); vertex++){
4357 >      vertex_rank++;
4358 >      int dist = sqrt((object->vx-vertex->x)*(object->vx-vertex->x) + \
4359 >                      (object->vy-vertex->y)*(object->vy-vertex->y) + \
4360 >                      (object->vz-vertex->z)*(object->vz-vertex->z));
4361 >
4362 >      if(abs(dist) < abs(minDistToVertex)){
4363 >        value = vertex_rank;
4364 >        minDistToVertex = dist;
4365 >      }
4366 >    }
4367 >  }
4368 >
4369 >  else if (variable == "decaysToTau"){
4370 >    value = abs (object->daughter0Id) == 15 || abs (object->daughter1Id) == 15;
4371 >  }
4372 >
4373 >
4374 >
4375 >
4376 >  else { clog << "WARNING: invalid stop variable '" << variable << "'\n"; value = -999; }
4377 >
4378 >  value = applyFunction(function, value);
4379 >
4380 >  return value;
4381 >
4382 > } // end stop valueLookup
4383 >
4384 >
4385 >
4386 >
4387  
4388   // Calculate the number of tracks in cone of DeltaR<0.5 around track1.
4389   // Return true iff no other tracks are found in this cone.
# Line 2838 | Line 4398 | OSUAnalysis::getTrkIsIso (const BNtrack*
4398  
4399   }
4400  
4401 + //calculate the scalar sum of Jet Pt in the event.
4402 + double
4403 + OSUAnalysis::getHt (const BNjetCollection* jetColl){
4404 +  double Ht = 0;
4405 +  for(BNjetCollection::const_iterator jet = jetColl->begin(); jet !=jetColl->end(); jet++){
4406 +    Ht += abs(jet->pt);
4407 +  }
4408 +  return Ht;
4409 + }
4410  
4411   double
4412   OSUAnalysis::getTrkPtRes (const BNtrack* track1){
# Line 2872 | Line 4441 | OSUAnalysis::getTrkPtTrue (const BNtrack
4441  
4442   double
4443   OSUAnalysis::getTrkCaloTotRhoCorr(const BNtrack* track) {
4444 <  // Return the pile-up (rho) corrected isolation energy, i.e., the total calorimeter energy around the candidate track.  
4445 <  if (!useTrackCaloRhoCorr_) return -99;  
4446 <  // if (!rhokt6CaloJetsHandle_) {
4447 <  //   cout << "ERROR [getTrkCaloTotRhoCorr]:  The collection rhokt6CaloJetsHandle is not available!" << endl;  
4448 <  //   return -99;  
4444 >  // Return the pile-up (rho) corrected isolation energy, i.e., the total calorimeter energy around the candidate track.
4445 >  if (!useTrackCaloRhoCorr_) return -99;
4446 >  // if (!rhokt6CaloJetsHandle_) {
4447 >  //   clog << "ERROR [getTrkCaloTotRhoCorr]:  The collection rhokt6CaloJetsHandle is not available!" << endl;
4448 >  //   return -99;
4449    // }
4450 <  double radDeltaRCone = 0.5;  
4451 <  double rhoCorr_kt6CaloJets = *rhokt6CaloJetsHandle_ * TMath::Pi() * pow(radDeltaRCone, 2);  // Define effective area as pi*r^2, where r is radius of DeltaR cone.  
4452 <  double rawCaloTot = track->caloHadDeltaRp5 + track->caloEMDeltaRp5;  
4453 <  double caloTotRhoCorrCalo = TMath::Max(0., rawCaloTot - rhoCorr_kt6CaloJets);  
4454 <  return caloTotRhoCorrCalo;  
4455 <
4450 >  double radDeltaRCone = 0.5;
4451 >  double rhoCorr_kt6CaloJets = *rhokt6CaloJetsHandle_ * TMath::Pi() * pow(radDeltaRCone, 2);  // Define effective area as pi*r^2, where r is radius of DeltaR cone.
4452 >  double rawCaloTot = track->caloHadDeltaRp5 + track->caloEMDeltaRp5;
4453 >  double caloTotRhoCorrCalo = TMath::Max(0., rawCaloTot - rhoCorr_kt6CaloJets);
4454 >  return caloTotRhoCorrCalo;
4455 >
4456 > }
4457 >
4458 > double
4459 > OSUAnalysis::getTrkDepTrkRp5RhoCorr(const BNtrack* track) {
4460 >  // Return the pile-up (rho) corrected isolation energy, i.e., the total calorimeter energy around the candidate track.              
4461 >  if (!useTrackCaloRhoCorr_) return -99;
4462 >  // if (!rhokt6CaloJetsHandle_) {                                                                                                    
4463 >  //   clog << "ERROR [getTrkCaloTotRhoCorr]:  The collection rhokt6CaloJetsHandle is not available!" << endl;                        
4464 >  //   return -99;                                                                                                                    
4465 >  // }                                                                                                                                
4466 >  double radDeltaRCone = 0.5;
4467 >  double rhoCorr_kt6CaloJets = *rhokt6CaloJetsHandle_ * TMath::Pi() * pow(radDeltaRCone, 2);  // Define effective area as pi*r^2, where r is radius of DeltaR cone.                                                                                                          
4468 >  double rawDepTrkRp5 = track->depTrkRp5;
4469 > double depTrkRp5RhoCorr = TMath::Max(0., rawDepTrkRp5 - rhoCorr_kt6CaloJets);
4470 > return depTrkRp5RhoCorr;
4471 >
4472 > }
4473 >
4474 > double
4475 > OSUAnalysis::getTrkDepTrkRp3RhoCorr(const BNtrack* track) {
4476 >  // Return the pile-up (rho) corrected isolation energy, i.e., the total calorimeter energy around the candidate track.                                                
4477 >  if (!useTrackCaloRhoCorr_) return -99;
4478 >  // if (!rhokt6CaloJetsHandle_) {                                                                                                                                      
4479 >  //   clog << "ERROR [getTrkCaloTotRhoCorr]:  The collection rhokt6CaloJetsHandle is not available!" << endl;                                                          
4480 >  //   return -99;                                                                                                                                                      
4481 >  // }                                                                                                                                                                  
4482 >  double radDeltaRCone = 0.3;
4483 > // Define effective area as pi*r^2, where r is radius of DeltaR cone
4484 >  double rhoCorr_kt6CaloJets = *rhokt6CaloJetsHandle_ * TMath::Pi() * pow(radDeltaRCone, 2);  
4485 >  double rawDepTrkRp3 = track->depTrkRp3;
4486 >  double depTrkRp3RhoCorr = TMath::Max(0., rawDepTrkRp3 - rhoCorr_kt6CaloJets);
4487 >  return depTrkRp3RhoCorr;
4488 >  
4489   }
4490  
4491  
# Line 2897 | Line 4499 | OSUAnalysis::WriteDeadEcal (){
4499    double etaEcal, phiEcal;
4500    ifstream DeadEcalFile(deadEcalFile_);
4501    if(!DeadEcalFile) {
4502 <    cout << "Error: DeadEcalFile has not been found." << endl;
4502 >    clog << "Error: DeadEcalFile has not been found." << endl;
4503      return;
4504    }
4505    if(DeadEcalVec.size()!= 0){
4506 <    cout << "Error: DeadEcalVec has a nonzero size" << endl;
4506 >    clog << "Error: DeadEcalVec has a nonzero size" << endl;
4507      return;
4508    }
4509    while(!DeadEcalFile.eof())
# Line 2912 | Line 4514 | OSUAnalysis::WriteDeadEcal (){
4514        newChan.phiEcal = phiEcal;
4515        DeadEcalVec.push_back(newChan);
4516      }
4517 <  if(DeadEcalVec.size() == 0) cout << "Warning: No dead Ecal channels have been found." << endl;
4517 >  if(DeadEcalVec.size() == 0) clog << "Warning: No dead Ecal channels have been found." << endl;
4518   }
4519  
4520   //if a track is found within dR<0.05 of a dead Ecal channel value = 1, otherwise value = 0
# Line 2921 | Line 4523 | OSUAnalysis::getTrkIsMatchedDeadEcal (co
4523    double deltaRLowest = 999;
4524    int value = 0;
4525    if (DeadEcalVec.size() == 0) WriteDeadEcal();
4526 <  for(std::vector<DeadEcal>::const_iterator ecal = DeadEcalVec.begin(); ecal != DeadEcalVec.end(); ++ecal){
4526 >  for(vector<DeadEcal>::const_iterator ecal = DeadEcalVec.begin(); ecal != DeadEcalVec.end(); ++ecal){
4527      double eta = ecal->etaEcal;
4528      double phi = ecal->phiEcal;
4529 <    double deltaRtemp = deltaR(eta, track1->eta, phi, track1->phi);
4529 >    double deltaRtemp = deltaR(eta, phi, track1->eta, track1->phi);
4530      if(deltaRtemp < deltaRLowest) deltaRLowest = deltaRtemp;
4531    }
4532    if (deltaRLowest<0.05) {value = 1;}
# Line 2932 | Line 4534 | OSUAnalysis::getTrkIsMatchedDeadEcal (co
4534    return value;
4535   }
4536  
4537 < // Returns the smallest DeltaR between the object and any generated true particle in the event.  
4537 > // Returns the smallest DeltaR between the object and any generated true particle in the event.
4538   template <class InputObject>
4539   double OSUAnalysis::getGenDeltaRLowest(InputObject object){
4540    double genDeltaRLowest = 999.;
# Line 2952 | Line 4554 | OSUAnalysis::applyFunction(string functi
4554    else if(function == "log") value = log10(value);
4555  
4556    else if(function == "") value = value;
4557 <  else{std::cout << "WARNING: invalid function '" << function << "'\n";}
4557 >  else{clog << "WARNING: invalid function '" << function << "'\n";}
4558  
4559    return value;
4560  
# Line 2961 | Line 4563 | OSUAnalysis::applyFunction(string functi
4563  
4564   template <class InputCollection>
4565   void OSUAnalysis::setObjectFlags(cut &currentCut, uint currentCutIndex, flagMap &individualFlags, flagMap &cumulativeFlags, InputCollection inputCollection, string inputType){
4566 <
4567 <  if (currentCut.inputCollection.find("pair")!=std::string::npos)  {
4568 <    string obj1, obj2;
4566 >
4567 >  if (verbose_>2) clog << "  Beginning setObjectFlags for cut " << currentCutIndex << ": " << currentCut.name
4568 >                       << ", inputType=" << inputType
4569 >                       << endl;  
4570 >  if (currentCut.inputCollection.find("pair")!=string::npos)  {
4571 >    string obj1, obj2;
4572      getTwoObjs(currentCut.inputCollection, obj1, obj2);
4573 +    if (verbose_>2) clog << "  Two object types:  " << obj1 << ", " << obj2 << endl;
4574      if (inputType==obj1 ||
4575 <        inputType==obj2) {
4575 >        inputType==obj2) {
4576        // Do not add a cut to individualFlags or cumulativeFlags, if the cut is on a paired collection,
4577 <      // and the inputType is a member of the pair.  
4578 <      // The cut will instead be applied when the setObjectFlags() is called for the paired collection.  
4579 <      // For example, if currentCut.inputCollection==electron-muon pairs,
4580 <      // then the flags should not be set here when inputType==muons or inputType==electrons.  
4581 <      return;
4582 <    }  
4583 <  }    
4577 >      // and the inputType is a member of the pair.
4578 >      // The cut will instead be applied when the setObjectFlags() is called for the paired collection.
4579 >      // For example, if currentCut.inputCollection==electron-muon pairs,
4580 >      // then the flags should not be set here when inputType==muons or inputType==electrons.
4581 >      return;
4582 >    }
4583 >  }
4584 >
4585 >  if (!inputCollection) cout << "ERROR:  invalid input collection for inputType=" << inputType << endl;  
4586 >
4587 >  if (verbose_>3) clog << "   Collection size:  " << inputCollection->size() << endl;
4588  
4589    for (uint object = 0; object != inputCollection->size(); object++){
4590  
4591 <    bool decision = true;//object passes if this cut doesn't cut on that type of object
4591 >    if (verbose_>4) clog << "    Setting flags for object " << object << endl;
4592 >
4593 >    bool cutDecision = true;//object passes if this cut doesn't cut on that type of object
4594 >    bool plotDecision = true;
4595  
4596      if(currentCut.inputCollection == inputType){
4597  
4598        vector<bool> subcutDecisions;
4599        for( int subcutIndex = 0; subcutIndex != currentCut.numSubcuts; subcutIndex++){
4600 <        double value = valueLookup(&inputCollection->at(object), currentCut.variables.at(subcutIndex), currentCut.functions.at(subcutIndex));
4601 <        subcutDecisions.push_back(evaluateComparison(value,currentCut.comparativeOperators.at(subcutIndex),currentCut.cutValues.at(subcutIndex)));
4600 >        string stringValue = "";
4601 >        double value = valueLookup(&inputCollection->at(object), currentCut.variables.at(subcutIndex), currentCut.functions.at(subcutIndex), stringValue);
4602 >        if (stringValue == "") subcutDecisions.push_back(evaluateComparison(value,currentCut.comparativeOperators.at(subcutIndex),currentCut.cutValues.at(subcutIndex)));
4603 >        else subcutDecisions.push_back(evaluateComparison(stringValue,currentCut.comparativeOperators.at(subcutIndex),currentCut.cutStringValues.at(subcutIndex)));
4604  
4605        }
4606 <      if(currentCut.numSubcuts == 1) decision = subcutDecisions.at(0);
4606 >      if(currentCut.numSubcuts == 1) cutDecision = subcutDecisions.at(0);
4607        else{
4608          bool tempDecision = true;
4609          for( int subcutIndex = 0;subcutIndex != currentCut.numSubcuts-1; subcutIndex++){
# Line 2997 | Line 4612 | void OSUAnalysis::setObjectFlags(cut &cu
4612            else if(currentCut.logicalOperators.at(subcutIndex) == "|"|| currentCut.logicalOperators.at(subcutIndex) == "||")
4613              tempDecision = subcutDecisions.at(subcutIndex) || subcutDecisions.at(subcutIndex+1);
4614          }
4615 <        decision = tempDecision;
4615 >        cutDecision = tempDecision;
4616        }
4617 +      //invert the cut if this cut is a veto
4618 +      if(currentCut.isVeto) cutDecision = !cutDecision;
4619 +      plotDecision = cutDecision;
4620      }
4621  
4622 <    individualFlags.at(inputType).at(currentCutIndex).push_back(decision);
4622 >    individualFlags.at(inputType).at(currentCutIndex).push_back(make_pair(cutDecision,plotDecision));
4623  
4624 <    //set flags for objects that pass each cut AND all the previous cuts
4625 <    bool previousCumulativeFlag = true;
4624 >    //set flags for objects that pass this cut AND all the previous cuts
4625 >    bool previousCumulativeCutFlag = true;
4626      for(uint previousCutIndex = 0; previousCutIndex != currentCutIndex; previousCutIndex++){
4627 <      if(previousCumulativeFlag && individualFlags.at(inputType).at(previousCutIndex).at(object)) previousCumulativeFlag = true;
4628 <      else{ previousCumulativeFlag = false; break;}
4627 >      if(previousCumulativeCutFlag && individualFlags.at(inputType).at(previousCutIndex).at(object).first) previousCumulativeCutFlag = true;
4628 >      else{ previousCumulativeCutFlag = false; break;}
4629      }
4630 <    cumulativeFlags.at(inputType).at(currentCutIndex).push_back(previousCumulativeFlag && decision);
4630 >    previousCumulativeCutFlag = previousCumulativeCutFlag && cutDecision;
4631 >    bool previousCumulativePlotFlag = true;
4632 >    for(uint previousCutIndex = 0; previousCutIndex != currentCutIndex; previousCutIndex++){
4633 >      if(previousCumulativePlotFlag && individualFlags.at(inputType).at(previousCutIndex).at(object).second) previousCumulativePlotFlag = true;
4634 >      else{ previousCumulativePlotFlag = false; break;}
4635 >    }
4636 >    previousCumulativePlotFlag = previousCumulativePlotFlag && plotDecision;
4637  
4638 <  }
4638 >    cumulativeFlags.at(inputType).at(currentCutIndex).push_back(make_pair(previousCumulativeCutFlag,previousCumulativePlotFlag));
4639  
4640 < }
4640 >  }  //   for (uint object = 0; object != inputCollection->size(); object++){
4641  
4642 + } // end void OSUAnalysis::setObjectFlags
4643  
3019 template <class InputCollection1, class InputCollection2>
3020 void OSUAnalysis::setObjectFlags(cut &currentCut, uint currentCutIndex, flagMap &individualFlags, flagMap &cumulativeFlags, \
3021                                 InputCollection1 inputCollection1, InputCollection2 inputCollection2, vector<bool> flags1, vector<bool> flags2, string inputType){
4644  
4645 + template <class InputCollection1, class InputCollection2>
4646 + void OSUAnalysis::setObjectFlags(cut &currentCut, uint currentCutIndex, flagMap &individualFlags, flagMap &cumulativeFlags,
4647 +                                 InputCollection1 inputCollection1, InputCollection2 inputCollection2, string inputType){
4648 +  // This function sets the flags for the paired object collection.  
4649 +  // If the cut is applying on the given paired object collection, then the flags for the single object collections are also set.
4650 +  // If not, then the flags for the paired object collection are taken as the AND of the flags for each single object collection.  
4651 +
4652 +  if (verbose_>2) clog << "  Beginning setObjectFlags for cut=" << currentCut.name
4653 +                       << ", inputType=" << inputType
4654 +                       << endl;  
4655  
4656    bool sameObjects = false;
4657 <  if(typeid(InputCollection1).name() == typeid(InputCollection2).name()) sameObjects = true;
4657 >  if(typeid(InputCollection1).name() == typeid(InputCollection2).name()) sameObjects = true;  // FIXME:  is sameObjects just the not of isTwoTypesOfObject?  If so, it's redundant.  
4658  
4659 <  // Get the strings for the two objects that make up the pair.  
4660 <  string obj1Type, obj2Type;
4659 >  // Get the strings for the two objects that make up the pair.
4660 >  string obj1Type, obj2Type;
4661    getTwoObjs(inputType, obj1Type, obj2Type);
4662    bool isTwoTypesOfObject = true;
4663 <  if (obj1Type==obj2Type) isTwoTypesOfObject = false;  
4663 >  if (obj1Type==obj2Type) isTwoTypesOfObject = false;
4664  
4665 <  // Initialize the flags for individual objects to all be false, if the cut is on the pair.  
4666 <  // Set them to true later, if any paired object passes (in which case both of its constituents should pass).  
4667 <  if (currentCut.inputCollection == inputType) {    
4665 >  // Initialize the flags for individual objects to all be false, if the cut is on the pair.
4666 >  // Set them to true later, if any paired object passes (in which case both of its constituents should pass).
4667 >  if (currentCut.inputCollection == inputType) {
4668      for (uint object1 = 0; object1 != inputCollection1->size(); object1++) {
4669 <      individualFlags.at(obj1Type).at(currentCutIndex).push_back(false);
4670 <      cumulativeFlags.at(obj1Type).at(currentCutIndex).push_back(false);
4669 >      individualFlags.at(obj1Type).at(currentCutIndex).push_back(make_pair(false,false));
4670 >      cumulativeFlags.at(obj1Type).at(currentCutIndex).push_back(make_pair(false,false));
4671      }
4672 <    if (isTwoTypesOfObject) { // Only initialize the second object if it is different from the first.  
4672 >    if (isTwoTypesOfObject) { // Only initialize the second object if it is different from the first.
4673        for (uint object2 = 0; object2 != inputCollection2->size(); object2++)  {
4674 <        individualFlags.at(obj2Type).at(currentCutIndex).push_back(false);
4675 <        cumulativeFlags.at(obj2Type).at(currentCutIndex).push_back(false);
4674 >        individualFlags.at(obj2Type).at(currentCutIndex).push_back(make_pair(false,false));
4675 >        cumulativeFlags.at(obj2Type).at(currentCutIndex).push_back(make_pair(false,false));
4676        }
4677      }
4678    }
4679 <  
4679 >
4680    int counter = 0;
4681  
4682    for (uint object1 = 0; object1 != inputCollection1->size(); object1++){
# Line 3053 | Line 4685 | void OSUAnalysis::setObjectFlags(cut &cu
4685        if(sameObjects && object1 >= object2) continue;//account for duplicate pairs if both collections are the same
4686  
4687  
4688 <      bool decision = true;//object passes if this cut doesn't cut on that type of object
4688 >      bool cutDecision  = true;//object passes if this cut doesn't cut on that type of object
4689 >      bool plotDecision = true;
4690  
4691 +      // Determine whether each pair passes the cut, only if inputCollection is the same as the inputType.  
4692        if(currentCut.inputCollection == inputType){
4693  
4694          vector<bool> subcutDecisions;
4695          for( int subcutIndex = 0; subcutIndex != currentCut.numSubcuts; subcutIndex++){
4696 <          double value = valueLookup(&inputCollection1->at(object1), &inputCollection2->at(object2), currentCut.variables.at(subcutIndex), currentCut.functions.at(subcutIndex));
4697 <          subcutDecisions.push_back(evaluateComparison(value,currentCut.comparativeOperators.at(subcutIndex),currentCut.cutValues.at(subcutIndex)));
4696 >          string stringValue = "";
4697 >          double value = valueLookup(&inputCollection1->at(object1), &inputCollection2->at(object2), currentCut.variables.at(subcutIndex), currentCut.functions.at(subcutIndex), stringValue);
4698 >          if (verbose_>1) clog << currentCut.variables.at(subcutIndex) << " = " << value
4699 >                               << endl;  
4700 >          if (stringValue == "") subcutDecisions.push_back(evaluateComparison(value,currentCut.comparativeOperators.at(subcutIndex),currentCut.cutValues.at(subcutIndex)));
4701 >          else subcutDecisions.push_back(evaluateComparison(stringValue,currentCut.comparativeOperators.at(subcutIndex),currentCut.cutStringValues.at(subcutIndex)));
4702          }
4703  
4704 <        if(currentCut.numSubcuts == 1) decision = subcutDecisions.at(0);
4704 >        if(currentCut.numSubcuts == 1) cutDecision = subcutDecisions.at(0);
4705          else{
4706            bool tempDecision = subcutDecisions.at(0);
4707            for( int subcutIndex = 1; subcutIndex < currentCut.numSubcuts; subcutIndex++){
# Line 3072 | Line 4710 | void OSUAnalysis::setObjectFlags(cut &cu
4710              else if(currentCut.logicalOperators.at(subcutIndex-1) == "|"|| currentCut.logicalOperators.at(subcutIndex-1) == "||")
4711                tempDecision = tempDecision || subcutDecisions.at(subcutIndex);
4712            }
4713 <          decision = tempDecision;
4713 >          cutDecision = tempDecision;
4714          }
4715 +        //invert the cut if this cut is a veto
4716 +        if (currentCut.isVeto) cutDecision = !cutDecision;
4717 +        plotDecision = cutDecision;
4718 +
4719 +        if (verbose_>1) clog << " cutDecision = " << cutDecision
4720 +                             << "; for currentCut.inputCollection = " << currentCut.inputCollection
4721 +                             << "; object1 (" << obj1Type << ") = " << object1
4722 +                             << "; object2 (" << obj2Type << ") = " << object2
4723 +                             << endl;  
4724 +        
4725 +        if (cutDecision) {  // only set the flags for the individual objects if the pair object is being cut on
4726 +          individualFlags.at(obj1Type).at(currentCutIndex).at(object1).first = true;
4727 +          individualFlags.at(obj2Type).at(currentCutIndex).at(object2).first = true;
4728 +        }
4729 +        if (plotDecision) {  // only set the flags for the individual objects if the pair object is being cut on
4730 +          individualFlags.at(obj1Type).at(currentCutIndex).at(object1).second = true;
4731 +          individualFlags.at(obj2Type).at(currentCutIndex).at(object2).second = true;
4732 +        }
4733 +        
4734 +
4735 +      } // if(currentCut.inputCollection == inputType){
4736 +
4737 +      // The individualFlags will be true if the inputCollection is not the same as the inputType.
4738 +      // They are also independent of the previous flags on the single objects.  
4739 +      individualFlags.at(inputType).at(currentCutIndex).push_back(make_pair(cutDecision,plotDecision));  
4740 +
4741 +
4742 +
4743 +      // ************************************
4744 +      // Determine cumulative flags
4745 +      // ************************************
4746 +      // determine whether this paired object passes this cut AND all previous cuts
4747 +      bool previousCumulativeCutFlag = true;
4748 +      for(uint previousCutIndex = 0; previousCutIndex != currentCutIndex; previousCutIndex++){
4749 +        if(previousCumulativeCutFlag && individualFlags.at(inputType).at(previousCutIndex).at(counter).first) previousCumulativeCutFlag = true;
4750 +        else{ previousCumulativeCutFlag = false; break;}
4751        }
4752 <      // if (decision) isPassObj1.at(object1) = true;
3079 <      // if (decision) isPassObj2.at(object2) = true;
3080 <      individualFlags.at(inputType).at(currentCutIndex).push_back(decision);  
3081 <      if (decision && currentCut.inputCollection == inputType) {  // only set the flags for the individual objects if the pair object is being cut on  
3082 <        individualFlags.at(obj1Type).at(currentCutIndex).at(object1) = true;  
3083 <        individualFlags.at(obj2Type).at(currentCutIndex).at(object2) = true;  
3084 <      }  
4752 >      previousCumulativeCutFlag = previousCumulativeCutFlag && cutDecision;
4753  
4754 <      //set flags for objects that pass each cut AND all the previous cuts
3087 <      bool previousCumulativeFlag = true;
4754 >      bool previousCumulativePlotFlag = true;
4755        for(uint previousCutIndex = 0; previousCutIndex != currentCutIndex; previousCutIndex++){
4756 <        if(previousCumulativeFlag && individualFlags.at(inputType).at(previousCutIndex).at(counter)) previousCumulativeFlag = true;
4757 <        else{ previousCumulativeFlag = false; break;}
4756 >        if(previousCumulativePlotFlag && individualFlags.at(inputType).at(previousCutIndex).at(counter).second) previousCumulativePlotFlag = true;
4757 >        else{ previousCumulativePlotFlag = false; break;}
4758        }
4759 <      //apply flags for the components of the composite object as well
4760 <      bool currentCumulativeFlag = true;
4761 <      if(flags1.size() == 0 && flags2.size() == 0) currentCumulativeFlag = previousCumulativeFlag && decision;
4762 <      else if(flags1.size() == 0) currentCumulativeFlag = previousCumulativeFlag && decision && flags2.at(object2);
4763 <      else if(flags2.size() == 0) currentCumulativeFlag = previousCumulativeFlag && decision && flags1.at(object1);
4764 <      else currentCumulativeFlag = previousCumulativeFlag && decision && flags1.at(object1) && flags2.at(object2);
4765 <      cumulativeFlags.at(inputType).at(currentCutIndex).push_back(currentCumulativeFlag);
4766 <      if (currentCumulativeFlag && currentCut.inputCollection == inputType) {  // only set the flags for the individual objects if the pair object is being cut on  
4767 <        cumulativeFlags.at(obj1Type).at(currentCutIndex).at(object1) = true && getPreviousCumulativeFlags(currentCutIndex, individualFlags, obj1Type, object1);  
4768 <        cumulativeFlags.at(obj2Type).at(currentCutIndex).at(object2) = true && getPreviousCumulativeFlags(currentCutIndex, individualFlags, obj2Type, object2);  
4759 >      previousCumulativePlotFlag = previousCumulativePlotFlag && plotDecision;
4760 >      
4761 >      // Get the index for the flags of each of the single objects in the pair.  Usually this is the index of the previous cut, i.e., currentCutIndex-1.    
4762 >      int cutIdxFlagsObj1 = max(int(currentCutIndex-1),0);
4763 >      int cutIdxFlagsObj2 = max(int(currentCutIndex-1),0);
4764 >      // If the inputCollection of the cut is not equal to the inputType but the inputCollection includes objects that are contained in inputType, then use the currentCutIndex for those collections.
4765 >      // For example, if the inputType is jet-jet pairs, and the inputCollection is track-jet pairs, then use currentCutIndex for cutIdxFlagsObj{1,2}, i.e., for both jets.  
4766 >      // For example, if the inputType is jets, and the inputCollection is track-jet pairs, then use currentCutIndex for cutIdxFlagsObj2 (jets) and currentCutIndex-1 for cutIdxFlagsObj1 (tracks).  
4767 >      if (currentCut.inputCollection != inputType) {  
4768 >        if (currentCut.inputCollection.find(obj1Type)!=string::npos) cutIdxFlagsObj1 = currentCutIndex;
4769 >        if (currentCut.inputCollection.find(obj2Type)!=string::npos) cutIdxFlagsObj2 = currentCutIndex;
4770 >      }  
4771 >      flagPair flags1 = cumulativeFlags.at(obj1Type).at(cutIdxFlagsObj1);  // flag for input collection 1
4772 >      flagPair flags2 = cumulativeFlags.at(obj2Type).at(cutIdxFlagsObj2);  // flag for input collection 2
4773 >      
4774 >      // The cumulative flag is only true if the paired object cumulative flag is true, and if the single object cumulative flags are true.  
4775 >      bool currentCumulativeCutFlag = true;
4776 >      bool currentCumulativePlotFlag = true;
4777 >      if(flags1.size() == 0 && flags2.size() == 0) currentCumulativeCutFlag = previousCumulativeCutFlag;
4778 >      else if(flags1.size() == 0) currentCumulativeCutFlag = previousCumulativeCutFlag && flags2.at(object2).first;
4779 >      else if(flags2.size() == 0) currentCumulativeCutFlag = previousCumulativeCutFlag && flags1.at(object1).first;
4780 >      else currentCumulativeCutFlag = previousCumulativeCutFlag && flags1.at(object1).first && flags2.at(object2).first;
4781 >
4782 >      if(flags1.size() == 0 && flags2.size() == 0) currentCumulativePlotFlag = previousCumulativePlotFlag;
4783 >      else if(flags1.size() == 0) currentCumulativePlotFlag = previousCumulativePlotFlag && flags2.at(object2).second;
4784 >      else if(flags2.size() == 0) currentCumulativePlotFlag = previousCumulativePlotFlag && flags1.at(object1).second;
4785 >      else currentCumulativePlotFlag = previousCumulativePlotFlag && flags1.at(object1).first && flags2.at(object2).second;
4786 >
4787 >      cumulativeFlags.at(inputType).at(currentCutIndex).push_back(make_pair(currentCumulativeCutFlag,currentCumulativePlotFlag));  // Set the flag for the paired object
4788 >
4789 >
4790 >      if (currentCumulativeCutFlag && currentCut.inputCollection == inputType) {  // Set the flags for the individual objects if the paired object is being cut on.  
4791 >        cumulativeFlags.at(obj1Type).at(currentCutIndex).at(object1).first  = true && getPreviousCumulativeFlags(currentCutIndex, individualFlags, obj1Type, object1, "cut");
4792 >        cumulativeFlags.at(obj2Type).at(currentCutIndex).at(object2).first  = true && getPreviousCumulativeFlags(currentCutIndex, individualFlags, obj2Type, object2, "cut");
4793 >        cumulativeFlags.at(obj1Type).at(currentCutIndex).at(object1).second = true && getPreviousCumulativeFlags(currentCutIndex, individualFlags, obj1Type, object1, "plot");
4794 >        cumulativeFlags.at(obj2Type).at(currentCutIndex).at(object2).second = true && getPreviousCumulativeFlags(currentCutIndex, individualFlags, obj2Type, object2, "plot");
4795 >
4796 >        if (verbose_>1) clog << " previousCumulativeCutFlag for object1 = " << getPreviousCumulativeFlags(currentCutIndex, individualFlags, obj2Type, object1, "cut") << endl;  
4797 >        if (verbose_>1) clog << " previousCumulativeCutFlag for object2 = " << getPreviousCumulativeFlags(currentCutIndex, individualFlags, obj2Type, object2, "cut") << endl;  
4798 >
4799        }
4800 +
4801        counter++;
4802  
4803 <    } // end   for (uint object2 = 0; object2 != inputCollection2->size(); object2++){
4804 <  }  // end   for (uint object1 = 0; object1 != inputCollection1->size(); object1++){
4803 >    } // end   for (uint object2 = 0; object2 != inputCollection2->size(); object2++)
4804 >  }  // end   for (uint object1 = 0; object1 != inputCollection1->size(); object1++)
4805  
4806 < }
4806 > } // end void OSUAnalysis::setObjectFlags
4807  
4808  
4809 < bool OSUAnalysis::getPreviousCumulativeFlags(uint currentCutIndex, flagMap &individualFlags, string obj1Type, uint object1) {
4810 <  // Return true iff for the collection obj1Type, the element with index object1 has individal flags set to true for
4811 <  // all cuts up to currentCutIndex  
4812 <  bool previousCumulativeFlag = true;  
4813 <  for (uint previousCutIndex = 0; previousCutIndex < currentCutIndex; previousCutIndex++) {  
4814 <    if (previousCumulativeFlag && individualFlags.at(obj1Type).at(previousCutIndex).at(object1)) previousCumulativeFlag = true;
4815 <    else {  
4816 <      previousCumulativeFlag = false; break;  
4809 > bool OSUAnalysis::getPreviousCumulativeFlags(uint currentCutIndex, flagMap &individualFlags, string obj1Type, uint object1, string flagType) {
4810 >  // Return true iff for the collection obj1Type, the element with index object1 has individal flags set to true for
4811 >  // all cuts up to currentCutIndex
4812 >  bool previousCumulativeFlag = true;
4813 >  for (uint previousCutIndex = 0; previousCutIndex < currentCutIndex; previousCutIndex++) {
4814 >    bool tempFlag = false;
4815 >    if(flagType == "cut") tempFlag = individualFlags.at(obj1Type).at(previousCutIndex).at(object1).first;
4816 >    else if(flagType == "plot") tempFlag = individualFlags.at(obj1Type).at(previousCutIndex).at(object1).second;
4817 >
4818 >    if (previousCumulativeFlag && tempFlag) previousCumulativeFlag = true;
4819 >    else {
4820 >      previousCumulativeFlag = false; break;
4821      }
4822    }
4823 <  return previousCumulativeFlag;  
4824 < }  
4823 >  return previousCumulativeFlag;
4824 > }
4825 >
4826 >
4827  
4828  
4829   template <class InputCollection>
4830 < void OSUAnalysis::fill1DHistogram(TH1* histo, histogram parameters, InputCollection inputCollection,vector<bool> flags, double scaleFactor){
4830 > void OSUAnalysis::assignTreeBranch(BranchSpecs parameters, InputCollection inputCollection, flagPair flags){
4831 >  // This function is similar to fill1DHistogram(), but instead of filling a histogram it assigns a value to a variable for the BNTree
4832 >
4833 >  if (BNTreeBranchVals_.count(parameters.name)==0) clog << "Error[assignTreeBranch]:  trying to assign value to " << parameters.name << " that does not have a branch set up.  Will likely seg fault." << endl;
4834 >  for (uint object = 0; object != inputCollection->size(); object++) {
4835 >
4836 >    if (!plotAllObjectsInPassingEvents_ && !flags.at(object).second) continue;
4837 >
4838 >    string inputVariable = parameters.inputVariable;
4839 >    string function = "";
4840 >    string stringValue = "";
4841 >    double value = valueLookup(&inputCollection->at(object), inputVariable, function, stringValue);
4842 >    BNTreeBranchVals_.at(parameters.name).push_back(value);
4843 >
4844 >  }
4845 > }
4846 >
4847 >
4848 > template <class InputCollection>
4849 > void OSUAnalysis::fill1DHistogram(TH1* histo, histogram parameters, InputCollection inputCollection, flagPair flags, double scaleFactor){
4850 >
4851 >  if (verbose_>2) clog << "  Filling histogram for " << parameters.name << endl;  
4852  
4853    for (uint object = 0; object != inputCollection->size(); object++){
4854  
4855 <    if(!plotAllObjectsInPassingEvents_ && !flags.at(object)) continue;
4855 >    if(!plotAllObjectsInPassingEvents_ && !flags.at(object).second) continue;
4856  
4857      string currentString = parameters.inputVariables.at(0);
4858      string inputVariable = "";
4859      string function = "";
4860 <    if(currentString.find("(")==std::string::npos){
4860 >    if(currentString.find("(")==string::npos){
4861        inputVariable = currentString;// variable to cut on
4862      }
4863      else{
# Line 3141 | Line 4866 | void OSUAnalysis::fill1DHistogram(TH1* h
4866        inputVariable = inputVariable.substr(0,inputVariable.size()-1);//remove trailing ")"
4867      }
4868  
4869 <    double value = valueLookup(&inputCollection->at(object), inputVariable, function);
4869 >    string stringValue = "";
4870 >    double value = valueLookup(&inputCollection->at(object), inputVariable, function, stringValue);
4871      histo->Fill(value,scaleFactor);
4872  
4873      if (printEventInfo_) {
4874 <      // Write information about event to screen, for testing purposes.  
4875 <      cout << "  Info for event:  value for histogram " << histo->GetName() << ":  " << value << endl;  
4874 >      // Write information about event to screen, for testing purposes.
4875 >      clog << "  Info for event:  value for histogram " << histo->GetName() << ":  " << value << " (object number " << object << ")" << endl;
4876      }
4877 <    
4877 >
4878    }
4879   }
4880  
4881   template <class InputCollection1, class InputCollection2>
4882 < void OSUAnalysis::fill1DHistogram(TH1* histo, histogram parameters, InputCollection1 inputCollection1, InputCollection2 inputCollection2, vector<bool> flags1, vector<bool> flags2, vector<bool> pairFlags, double scaleFactor){
4882 > void OSUAnalysis::fill1DHistogram(TH1* histo, histogram parameters, InputCollection1 inputCollection1, InputCollection2 inputCollection2,
4883 >                                  flagPair pairFlags, double scaleFactor){
4884  
4885    bool sameObjects = false;
4886    if(typeid(InputCollection1).name() == typeid(InputCollection2).name()) sameObjects = true;
# Line 3165 | Line 4892 | void OSUAnalysis::fill1DHistogram(TH1* h
4892        if(sameObjects && object1 >= object2) continue;//account for duplicate pairs if both collections are the same
4893  
4894        pairCounter++;
4895 <      //only take objects which have passed all cuts and pairs which have passed all cuts
3169 <      if(!plotAllObjectsInPassingEvents_ && !flags1.at(object1)) continue;
3170 <      if(!plotAllObjectsInPassingEvents_ && !flags2.at(object2)) continue;
3171 <      if(!plotAllObjectsInPassingEvents_ && !pairFlags.at(pairCounter)) continue;
4895 >      if(!plotAllObjectsInPassingEvents_ && !pairFlags.at(pairCounter).second) continue;
4896  
4897        string currentString = parameters.inputVariables.at(0);
4898        string inputVariable = "";
4899        string function = "";
4900 <      if(currentString.find("(")==std::string::npos){
4900 >      if(currentString.find("(")==string::npos){
4901          inputVariable = currentString;// variable to cut on
4902        }
4903        else{
# Line 3182 | Line 4906 | void OSUAnalysis::fill1DHistogram(TH1* h
4906          inputVariable = inputVariable.substr(0,inputVariable.size()-1);//remove trailing ")"
4907        }
4908  
4909 <      double value = valueLookup(&inputCollection1->at(object1), &inputCollection2->at(object2), inputVariable, function);
4909 >      string stringValue = "";
4910 >      double value = valueLookup(&inputCollection1->at(object1), &inputCollection2->at(object2), inputVariable, function, stringValue);
4911        histo->Fill(value,scaleFactor);
4912  
4913 +      if (printEventInfo_) {
4914 +        // Write information about event to screen, for testing purposes.
4915 +        clog << "  Info for event:  value for histogram " << histo->GetName() << ":  " << value
4916 +             << " (object1 number " << object1 << "), "
4917 +             << " (object2 number " << object2 << ")"
4918 +             << endl;
4919 +      }
4920 +      
4921      }
4922    }
4923  
# Line 3192 | Line 4925 | void OSUAnalysis::fill1DHistogram(TH1* h
4925  
4926  
4927   template <class InputCollection>
4928 < void OSUAnalysis::fill2DHistogram(TH2* histo, histogram parameters, InputCollection inputCollection,vector<bool> flags, double scaleFactor){
4928 > void OSUAnalysis::fill2DHistogram(TH2* histo, histogram parameters, InputCollection inputCollection, flagPair flags, double scaleFactor){
4929  
4930    for (uint object = 0; object != inputCollection->size(); object++){
4931  
4932 <    if(!plotAllObjectsInPassingEvents_ && !flags.at(object)) continue;
4932 >    if(!plotAllObjectsInPassingEvents_ && !flags.at(object).second) continue;
4933  
4934 +    string stringValue = "";
4935      string currentString = parameters.inputVariables.at(0);
4936      string inputVariable = "";
4937      string function = "";
4938 <    if(currentString.find("(")==std::string::npos){
4938 >    if(currentString.find("(")==string::npos){
4939        inputVariable = currentString;// variable to cut on
4940      }
4941      else{
# Line 3209 | Line 4943 | void OSUAnalysis::fill2DHistogram(TH2* h
4943        inputVariable = currentString.substr(currentString.find("(")+1);//get rest of string
4944        inputVariable = inputVariable.substr(0,inputVariable.size()-1);//remove trailing ")"
4945      }
4946 <    double valueX = valueLookup(&inputCollection->at(object), inputVariable, function);
4946 >    double valueX = valueLookup(&inputCollection->at(object), inputVariable, function, stringValue);
4947  
4948      currentString = parameters.inputVariables.at(1);
4949      inputVariable = "";
4950      function = "";
4951 <    if(currentString.find("(")==std::string::npos){
4951 >    if(currentString.find("(")==string::npos){
4952        inputVariable = currentString;// variable to cut on
4953      }
4954      else{
# Line 3223 | Line 4957 | void OSUAnalysis::fill2DHistogram(TH2* h
4957        inputVariable = inputVariable.substr(0,inputVariable.size()-1);//remove trailing ")"
4958      }
4959  
4960 <    double valueY = valueLookup(&inputCollection->at(object), inputVariable, function);
4960 >    double valueY = valueLookup(&inputCollection->at(object), inputVariable, function, stringValue);
4961  
4962      histo->Fill(valueX,valueY,scaleFactor);
4963  
# Line 3232 | Line 4966 | void OSUAnalysis::fill2DHistogram(TH2* h
4966   }
4967  
4968   template <class InputCollection1, class InputCollection2>
4969 < void OSUAnalysis::fill2DHistogram(TH2* histo, histogram parameters, InputCollection1 inputCollection1, InputCollection2 inputCollection2, vector<bool> flags1, vector<bool> flags2, vector<bool> pairFlags, double scaleFactor){
4969 > void OSUAnalysis::fill2DHistogram(TH2* histo, histogram parameters, InputCollection1 inputCollection1, InputCollection2 inputCollection2,
4970 >                                  flagPair pairFlags, double scaleFactor){
4971  
4972    bool sameObjects = false;
4973    if(typeid(InputCollection1).name() == typeid(InputCollection2).name()) sameObjects = true;
# Line 3245 | Line 4980 | void OSUAnalysis::fill2DHistogram(TH2* h
4980  
4981        pairCounter++;
4982  
4983 <      //only take objects which have passed all cuts and pairs which have passed all cuts
3249 <      if(!plotAllObjectsInPassingEvents_ && !flags1.at(object1)) continue;
3250 <      if(!plotAllObjectsInPassingEvents_ && !flags2.at(object2)) continue;
3251 <      if(!plotAllObjectsInPassingEvents_ && !pairFlags.at(pairCounter)) continue;
4983 >      if(!plotAllObjectsInPassingEvents_ && !pairFlags.at(pairCounter).second) continue;
4984  
4985 +      string stringValue = "";
4986        string currentString = parameters.inputVariables.at(0);
4987        string inputVariable = "";
4988        string function = "";
4989 <      if(currentString.find("(")==std::string::npos){
4989 >      if(currentString.find("(")==string::npos){
4990          inputVariable = currentString;// variable to cut on
4991        }
4992        else{
# Line 3261 | Line 4994 | void OSUAnalysis::fill2DHistogram(TH2* h
4994          inputVariable = currentString.substr(currentString.find("(")+1);//get rest of string
4995          inputVariable = inputVariable.substr(0,inputVariable.size()-1);//remove trailing ")"
4996        }
4997 <      double valueX = valueLookup(&inputCollection1->at(object1), &inputCollection2->at(object2), inputVariable, function);
4997 >      double valueX = valueLookup(&inputCollection1->at(object1), &inputCollection2->at(object2), inputVariable, function, stringValue);
4998  
4999        currentString = parameters.inputVariables.at(1);
5000        inputVariable = "";
5001        function = "";
5002 <      if(currentString.find("(")==std::string::npos){
5002 >      if(currentString.find("(")==string::npos){
5003          inputVariable = currentString;// variable to cut on
5004        }
5005        else{
# Line 3274 | Line 5007 | void OSUAnalysis::fill2DHistogram(TH2* h
5007          inputVariable = currentString.substr(currentString.find("(")+1);//get rest of string
5008          inputVariable = inputVariable.substr(0,inputVariable.size()-1);//remove trailing ")"
5009        }
5010 <      double valueY = valueLookup(&inputCollection1->at(object1), &inputCollection2->at(object2), inputVariable, function);
5010 >      double valueY = valueLookup(&inputCollection1->at(object1), &inputCollection2->at(object2), inputVariable, function, stringValue);
5011  
5012  
5013        histo->Fill(valueX,valueY,scaleFactor);
# Line 3295 | Line 5028 | int OSUAnalysis::getGenMatchedParticleIn
5028  
5029      double currentDeltaR = deltaR(object->eta,object->phi,mcparticle->eta,mcparticle->phi);
5030      if(currentDeltaR > 0.05) continue;
5031 <    //     cout << std::setprecision(3) << std::setw(20)
5031 >    //     clog << setprecision(3) << setw(20)
5032      //          << "\tcurrentParticle:  eta = " << mcparticles->at(mcparticle - mcparticles->begin()).eta
5033 <    //          << std::setw(20)
5033 >    //          << setw(20)
5034      //          << "\tphi = " << mcparticles->at(mcparticle - mcparticles->begin()).phi
5035 <    //          << std::setw(20)
5035 >    //          << setw(20)
5036      //          << "\tdeltaR = " << currentDeltaR
5037 <    //          << std::setprecision(1)
5038 <    //          << std::setw(20)
5037 >    //          << setprecision(1)
5038 >    //          << setw(20)
5039      //          << "\tid = " << mcparticles->at(mcparticle - mcparticles->begin()).id
5040 <    //          << std::setw(20)
5040 >    //          << setw(20)
5041      //          << "\tmotherId = " << mcparticles->at(mcparticle - mcparticles->begin()).motherId
5042 <    //          << std::setw(20)
5042 >    //          << setw(20)
5043      //          << "\tstatus = " << mcparticles->at(mcparticle - mcparticles->begin()).status<< endl;
5044      if(currentDeltaR < bestMatchDeltaR && mcparticles->at(mcparticle - mcparticles->begin()).id != mcparticles->at(mcparticle - mcparticles->begin()).motherId){
5045        bestMatchIndex = mcparticle - mcparticles->begin();
# Line 3314 | Line 5047 | int OSUAnalysis::getGenMatchedParticleIn
5047      }
5048  
5049    }
5050 <  //   if(bestMatchDeltaR != 999)  cout << "bestMatch:  deltaR = " << bestMatchDeltaR << "   id = " << mcparticles->at(bestMatchIndex).id << "   motherId = " << mcparticles->at(bestMatchIndex).motherId << endl;
5051 <  //   else cout << "no match found..." << endl;
5050 >  //   if(bestMatchDeltaR != 999)  clog << "bestMatch:  deltaR = " << bestMatchDeltaR << "   id = " << mcparticles->at(bestMatchIndex).id << "   motherId = " << mcparticles->at(bestMatchIndex).motherId << endl;
5051 >  //   else clog << "no match found..." << endl;
5052    return bestMatchIndex;
5053  
5054   }
# Line 3369 | Line 5102 | int OSUAnalysis::findTauMotherIndex(cons
5102   // 20        strange baryon
5103   // 21        charm baryon
5104   // 22        bottom baryon
5105 < // 23        other
5105 > // 23        QCD string
5106 > // 24        other
5107  
5108   int OSUAnalysis::getPdgIdBinValue(int pdgId){
5109  
# Line 3393 | Line 5127 | int OSUAnalysis::getPdgIdBinValue(int pd
5127    else if(absPdgId > 3000 && absPdgId < 4000  ) binValue = 20;
5128    else if(absPdgId > 4000 && absPdgId < 5000  ) binValue = 21;
5129    else if(absPdgId > 5000 && absPdgId < 6000  ) binValue = 22;
5130 +  else if(absPdgId == 92  ) binValue = 23;
5131  
5132 <  else binValue = 23;
5132 >  else binValue = 24;
5133  
5134    return binValue;
5135  
# Line 3404 | Line 5139 | const BNprimaryvertex *
5139   OSUAnalysis::chosenVertex ()
5140   {
5141    const BNprimaryvertex *chosenVertex = 0;
5142 <  if(std::find(objectsToCut.begin(), objectsToCut.end(), "primaryvertexs") != objectsToCut.end()) {
5143 <    vector<bool> vertexFlags = cumulativeFlags.at("primaryvertexs").back().size() ? cumulativeFlags.at("primaryvertexs").back() :
5144 <      cumulativeFlags.at("primaryvertexs").at(cumulativeFlags.at("primaryvertexs").size() - 2);
5142 >  if(cumulativeFlags.find ("primaryvertexs") != cumulativeFlags.end ()){
5143 >    flagPair vertexFlags;
5144 >    for (int i = cumulativeFlags.at("primaryvertexs").size() - 1; i >= 0; i--){
5145 >      if (cumulativeFlags.at("primaryvertexs").at(i).size()){
5146 >        vertexFlags = cumulativeFlags.at("primaryvertexs").at(i);
5147 >        break;
5148 >      }
5149 >    }
5150      for (uint vertexIndex = 0; vertexIndex != vertexFlags.size(); vertexIndex++){
5151 <      if(!vertexFlags.at(vertexIndex)) continue;
5151 >      if(!vertexFlags.at(vertexIndex).first) continue;
5152        chosenVertex = & primaryvertexs->at(vertexIndex);
5153        break;
5154      }
5155    }
5156 <  else {
5157 <    chosenVertex = &primaryvertexs->at(0);
3418 <  }
5156 >  else if (find (objectsToGet.begin (), objectsToGet.end (), "primaryvertexs") != objectsToGet.end ())
5157 >    chosenVertex = & primaryvertexs->at (0);
5158  
5159    return chosenVertex;
5160   }
# Line 3424 | Line 5163 | const BNmet *
5163   OSUAnalysis::chosenMET ()
5164   {
5165    const BNmet *chosenMET = 0;
5166 <  if(std::find(objectsToCut.begin(), objectsToCut.end(), "mets") != objectsToCut.end()) {
5167 <    vector<bool> metFlags = cumulativeFlags.at("mets").back().size() ? cumulativeFlags.at("mets").back() :
5168 <      cumulativeFlags.at("mets").at(cumulativeFlags.at("mets").size() - 2);
5166 >  if(cumulativeFlags.find ("mets") != cumulativeFlags.end ()){
5167 >    flagPair metFlags;
5168 >    for (int i = cumulativeFlags.at("mets").size() - 1; i >= 0; i--){
5169 >      if (cumulativeFlags.at("mets").at(i).size()){
5170 >        metFlags = cumulativeFlags.at("mets").at(i);
5171 >        break;
5172 >      }
5173 >    }
5174      for (uint metIndex = 0; metIndex != metFlags.size(); metIndex++){
5175 <      if(!metFlags.at(metIndex)) continue;
5175 >      if(!metFlags.at(metIndex).first) continue;
5176        chosenMET = & mets->at(metIndex);
5177        break;
5178      }
5179    }
5180 <  else {
5181 <    chosenMET = &mets->at(0);
3438 <  }
5180 >  else if (find (objectsToGet.begin (), objectsToGet.end (), "mets") != objectsToGet.end ())
5181 >    chosenMET = & mets->at (0);
5182  
5183    return chosenMET;
5184   }
# Line 3444 | Line 5187 | const BNelectron *
5187   OSUAnalysis::chosenElectron ()
5188   {
5189    const BNelectron *chosenElectron = 0;
5190 <  if(std::find(objectsToCut.begin(), objectsToCut.end(), "electrons") != objectsToCut.end()) {
5191 <    vector<bool> electronFlags = cumulativeFlags.at("electrons").back().size() ? cumulativeFlags.at("electrons").back() :
5192 <      cumulativeFlags.at("electrons").at(cumulativeFlags.at("electrons").size() - 2);
5190 >  if(cumulativeFlags.find ("electrons") != cumulativeFlags.end ()){
5191 >    flagPair electronFlags;
5192 >    for (int i = cumulativeFlags.at("electrons").size() - 1; i >= 0; i--){
5193 >      if (cumulativeFlags.at("electrons").at(i).size()){
5194 >        electronFlags = cumulativeFlags.at("electrons").at(i);
5195 >        break;
5196 >      }
5197 >    }
5198      for (uint electronIndex = 0; electronIndex != electronFlags.size(); electronIndex++){
5199 <      if(!electronFlags.at(electronIndex)) continue;
5199 >      if(!electronFlags.at(electronIndex).first) continue;
5200        chosenElectron = & electrons->at(electronIndex);
5201        break;
5202      }
5203    }
5204 <  else {
5205 <    chosenElectron = &electrons->at(0);
3458 <  }
5204 >  else if (find (objectsToGet.begin (), objectsToGet.end (), "electrons") != objectsToGet.end ())
5205 >    chosenElectron = & electrons->at (0);
5206  
5207    return chosenElectron;
5208   }
5209  
5210 +
5211   const BNmuon *
5212   OSUAnalysis::chosenMuon ()
5213   {
5214    const BNmuon *chosenMuon = 0;
5215 <  if(std::find(objectsToCut.begin(), objectsToCut.end(), "muons") != objectsToCut.end()) {
5216 <    vector<bool> muonFlags = cumulativeFlags.at("muons").back().size() ? cumulativeFlags.at("muons").back() :
5217 <      cumulativeFlags.at("muons").at(cumulativeFlags.at("muons").size() - 2);
5215 >  if(cumulativeFlags.find ("muons") != cumulativeFlags.end ()){
5216 >    flagPair muonFlags;
5217 >    for (int i = cumulativeFlags.at("muons").size() - 1; i >= 0; i--){
5218 >      if (cumulativeFlags.at("muons").at(i).size()){
5219 >        muonFlags = cumulativeFlags.at("muons").at(i);
5220 >        break;
5221 >      }
5222 >    }
5223      for (uint muonIndex = 0; muonIndex != muonFlags.size(); muonIndex++){
5224 <      if(!muonFlags.at(muonIndex)) continue;
5224 >      if(!muonFlags.at(muonIndex).first) continue;
5225        chosenMuon = & muons->at(muonIndex);
5226        break;
5227      }
5228    }
5229 <  else {
5230 <    chosenMuon = &muons->at(0);
3478 <  }
5229 >  else if (find (objectsToGet.begin (), objectsToGet.end (), "muons") != objectsToGet.end ())
5230 >    chosenMuon = & muons->at (0);
5231  
5232    return chosenMuon;
5233   }
5234  
5235 + double
5236 + OSUAnalysis::chosenHT ()
5237 + {
5238 +  double chosenHT = 0.0;
5239 +  if(cumulativeFlags.find ("jets") != cumulativeFlags.end ()){
5240 +    flagPair jetFlags;
5241 +    for (int i = cumulativeFlags.at("jets").size() - 1; i >= 0; i--){
5242 +      if (cumulativeFlags.at("jets").at(i).size()){
5243 +        jetFlags = cumulativeFlags.at("jets").at(i);
5244 +        break;
5245 +      }
5246 +    }
5247 +    for (uint jetIndex = 0; jetIndex != jetFlags.size(); jetIndex++){
5248 +      if(!jetFlags.at(jetIndex).first) continue;
5249 +      chosenHT += jets->at(jetIndex).pt;
5250 +    }
5251 +  }
5252 +
5253 +  return chosenHT;
5254 + }
5255 +
5256 + pair<const BNmuon *, const BNmuon *>
5257 + OSUAnalysis::leadMuonPair ()
5258 + {
5259 +  pair<const BNmuon *, const BNmuon *> leadMuonPair;
5260 +  leadMuonPair.first = leadMuonPair.second = 0;
5261 +
5262 +  if(cumulativeFlags.find ("muons") != cumulativeFlags.end ()){
5263 +    flagPair muonFlags;
5264 +    for (int i = cumulativeFlags.at("muons").size() - 1; i >= 0; i--){
5265 +      if (cumulativeFlags.at("muons").at(i).size()){
5266 +        muonFlags = cumulativeFlags.at("muons").at(i);
5267 +        break;
5268 +      }
5269 +    }
5270 +    for (uint muonIndex0 = 0; muonIndex0 != muonFlags.size(); muonIndex0++){
5271 +      if(!muonFlags.at(muonIndex0).first) continue;
5272 +      for (uint muonIndex1 = muonIndex0 + 1; muonIndex1 < muonFlags.size(); muonIndex1++){
5273 +        if(!muonFlags.at(muonIndex1).first) continue;
5274 +        const BNmuon *mu0 = & muons->at(muonIndex0);
5275 +        const BNmuon *mu1 = & muons->at(muonIndex1);
5276 +        if(leadMuonPair.first == 0 || leadMuonPair.second == 0){
5277 +          leadMuonPair.first = mu0;
5278 +          leadMuonPair.second = mu1;
5279 +        }
5280 +        else{
5281 +          TVector2 newPt0 (mu0->px, mu0->py),
5282 +                   newPt1 (mu1->px, mu1->py),
5283 +                   oldPt0 (leadMuonPair.first->px, leadMuonPair.first->py),
5284 +                   oldPt1 (leadMuonPair.second->px, leadMuonPair.second->py);
5285 +          if(newPt0.Mod () + newPt1.Mod () > oldPt0.Mod() + oldPt1.Mod ())
5286 +            {
5287 +              leadMuonPair.first = mu0;
5288 +              leadMuonPair.second = mu1;
5289 +            }
5290 +        }
5291 +      }
5292 +    }
5293 +  }
5294 +
5295 +  return leadMuonPair;
5296 + }
5297 +
5298 + pair<const BNelectron *, const BNelectron *>
5299 + OSUAnalysis::leadElectronPair ()
5300 + {
5301 +  pair<const BNelectron *, const BNelectron *> leadElectronPair;
5302 +  leadElectronPair.first = leadElectronPair.second = 0;
5303 +  if(cumulativeFlags.find ("electrons") != cumulativeFlags.end ()){
5304 +    flagPair electronFlags;
5305 +    for (int i = cumulativeFlags.at("electrons").size() - 1; i >= 0; i--){
5306 +      if (cumulativeFlags.at("electrons").at(i).size()){
5307 +        electronFlags = cumulativeFlags.at("electrons").at(i);
5308 +        break;
5309 +      }
5310 +    }
5311 +    for (uint electronIndex0 = 0; electronIndex0 != electronFlags.size(); electronIndex0++){
5312 +      if(!electronFlags.at(electronIndex0).first) continue;
5313 +      for (uint electronIndex1 = electronIndex0 + 1; electronIndex1 < electronFlags.size(); electronIndex1++){
5314 +        if(!electronFlags.at(electronIndex1).first) continue;
5315 +        const BNelectron *el0 = & electrons->at(electronIndex0);
5316 +        const BNelectron *el1 = & electrons->at(electronIndex1);
5317 +        if(leadElectronPair.first == 0 || leadElectronPair.second == 0){
5318 +          leadElectronPair.first = el0;
5319 +          leadElectronPair.second = el1;
5320 +        }
5321 +        else{
5322 +          TVector2 newPt0 (el0->px, el0->py),
5323 +                   newPt1 (el1->px, el1->py),
5324 +                   oldPt0 (leadElectronPair.first->px, leadElectronPair.first->py),
5325 +                   oldPt1 (leadElectronPair.second->px, leadElectronPair.second->py);
5326 +          if(newPt0.Mod () + newPt1.Mod () > oldPt0.Mod() + oldPt1.Mod ())
5327 +            {
5328 +              leadElectronPair.first = el0;
5329 +              leadElectronPair.second = el1;
5330 +            }
5331 +        }
5332 +      }
5333 +    }
5334 +  }
5335 +
5336 +  return leadElectronPair;
5337 + }
5338  
5339   DEFINE_FWK_MODULE(OSUAnalysis);

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