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Comparing UserCode/OSUT3Analysis/AnaTools/plugins/OSUAnalysis.cc (file contents):
Revision 1.49 by wulsin, Wed Apr 17 15:39:43 2013 UTC vs.
Revision 1.83 by biliu, Wed Jun 5 03:18:56 2013 UTC

# Line 17 | Line 17 | OSUAnalysis::OSUAnalysis (const edm::Par
17    photons_ (cfg.getParameter<edm::InputTag> ("photons")),
18    superclusters_ (cfg.getParameter<edm::InputTag> ("superclusters")),
19    triggers_ (cfg.getParameter<edm::InputTag> ("triggers")),
20 <  puFile_ (cfg.getParameter<std::string> ("puFile")),
21 <  deadEcalFile_ (cfg.getParameter<std::string> ("deadEcalFile")),
22 <  muonSFFile_ (cfg.getParameter<std::string> ("muonSFFile")),
23 <  dataPU_ (cfg.getParameter<std::string> ("dataPU")),
24 <  electronSFID_ (cfg.getParameter<std::string> ("electronSFID")),
25 <  muonSF_ (cfg.getParameter<std::string> ("muonSF")),
26 <  dataset_ (cfg.getParameter<std::string> ("dataset")),
27 <  datasetType_ (cfg.getParameter<std::string> ("datasetType")),
20 >  trigobjs_ (cfg.getParameter<edm::InputTag> ("trigobjs")),
21 >  puFile_ (cfg.getParameter<string> ("puFile")),
22 >  deadEcalFile_ (cfg.getParameter<string> ("deadEcalFile")),
23 >  muonSFFile_ (cfg.getParameter<string> ("muonSFFile")),
24 >  dataPU_ (cfg.getParameter<string> ("dataPU")),
25 >  electronSFID_ (cfg.getParameter<string> ("electronSFID")),
26 >  muonSF_ (cfg.getParameter<string> ("muonSF")),
27 >  dataset_ (cfg.getParameter<string> ("dataset")),
28 >  datasetType_ (cfg.getParameter<string> ("datasetType")),
29    channels_  (cfg.getParameter<vector<edm::ParameterSet> >("channels")),
30    histogramSets_ (cfg.getParameter<vector<edm::ParameterSet> >("histogramSets")),
31 +  treeBranchSets_   (cfg.getParameter<vector<edm::ParameterSet> >("treeBranchSets")),
32    plotAllObjectsInPassingEvents_ (cfg.getParameter<bool> ("plotAllObjectsInPassingEvents")),
33    doPileupReweighting_ (cfg.getParameter<bool> ("doPileupReweighting")),
34 <  printEventInfo_ (cfg.getParameter<bool> ("printEventInfo")),
34 >  applyLeptonSF_ (cfg.getParameter<bool> ("applyLeptonSF")),
35 >  applyBtagSF_ (cfg.getParameter<bool> ("applyBtagSF")),
36 >  minBtag_ (cfg.getParameter<int> ("minBtag")),
37 >  maxBtag_ (cfg.getParameter<int> ("maxBtag")),
38 >  printEventInfo_      (cfg.getParameter<bool> ("printEventInfo")),
39 >  printAllTriggers_    (cfg.getParameter<bool> ("printAllTriggers")),
40    useTrackCaloRhoCorr_ (cfg.getParameter<bool> ("useTrackCaloRhoCorr")),
41 <  stopCTau_ (cfg.getParameter<vector<double> > ("stopCTau"))
42 <
43 < {
41 >  stopCTau_ (cfg.getParameter<vector<double> > ("stopCTau")),
42 >  GetPlotsAfterEachCut_ (cfg.getParameter<bool> ("GetPlotsAfterEachCut"))
43 > {
44  
45    TH1::SetDefaultSumw2 ();
46  
47    //create pile-up reweighting object, if necessary
48    if(datasetType_ != "data") {
49      if(doPileupReweighting_) puWeight_ = new PUWeight (puFile_, dataPU_, dataset_);
50 <    //    muonSFWeight_ = new MuonSFWeight (muonSFFile_, muonSF_);
51 <    //    electronSFWeight_ = new ElectronSFWeight ("53X", electronSFID_);
50 >    if (applyLeptonSF_){
51 >      muonSFWeight_ = new MuonSFWeight (muonSFFile_, muonSF_);
52 >      electronSFWeight_ = new ElectronSFWeight ("53X", electronSFID_);
53 >    }
54 >    if (applyBtagSF_){
55 >      bTagSFWeight_ = new BtagSFWeight;
56 >    }
57    }
58 < #ifdef DISPLACED_SUSY
59 <  if (datasetType_ == "signalMC")
48 <    cTauWeight_ = new CTauWeight (stopCTau_.at (0), stopCTau_.at (1), stops_);
49 < #endif
58 >  if (datasetType_ == "signalMC" && regex_match (dataset_, regex ("stop.*to.*_.*mm.*")))
59 >    stopCTauWeight_ = new StopCTauWeight (stopCTau_.at (0), stopCTau_.at (1), stops_);
60  
61  
62    // Construct Cutflow Objects. These store the results of cut decisions and
63    // handle filling cut flow histograms.
64    masterCutFlow_ = new CutFlow (fs_);
55 –  std::vector<TFileDirectory> directories;
65  
66    //always get vertex collection so we can assign the primary vertex in the event
67    objectsToGet.push_back("primaryvertexs");
59 –
60 –  //always make the plot of number of primary vertices (to check pile-up reweighting)
68    objectsToPlot.push_back("primaryvertexs");
69 +  objectsToCut.push_back("primaryvertexs");
70 +
71  
72    //always get the MC particles to do GEN-matching
73    objectsToGet.push_back("mcparticles");
# Line 66 | Line 75 | OSUAnalysis::OSUAnalysis (const edm::Par
75    //always get the event collection to do pile-up reweighting
76    objectsToGet.push_back("events");
77  
78 +
79 +  // Parse the tree variable definitions.    
80 +  for (uint iBranchSet = 0; iBranchSet<treeBranchSets_.size(); iBranchSet++) {
81 +    string tempInputCollection = treeBranchSets_.at(iBranchSet).getParameter<string> ("inputCollection");
82 +    if(tempInputCollection.find("pairs")!=string::npos) { cout << "Warning:  tree filling is not configured for pairs of objects, so will not work for collection: " << tempInputCollection << endl; }  
83 +    objectsToGet.push_back(tempInputCollection);
84 +    objectsToCut.push_back(tempInputCollection);
85 +
86 +    vector<string> branchList(treeBranchSets_.at(iBranchSet).getParameter<vector<string> >("branches"));
87 +
88 +    for (uint iBranch = 0; iBranch<branchList.size(); iBranch++) {
89 +      BranchSpecs br;
90 +      br.inputCollection = tempInputCollection;
91 +      br.inputVariable = branchList.at(iBranch);  
92 +      TString newName = TString(br.inputCollection) + "_" + TString(br.inputVariable);  
93 +      br.name = string(newName.Data());  
94 +      treeBranches_.push_back(br);
95 +    }  
96 +
97 +  } // end   for (uint iBranchSet = 0; iBranchSet<treeBranchSets_.size(); iBranchSet++) {
98 +
99 +
100    //parse the histogram definitions
101    for(uint currentHistogramSet = 0; currentHistogramSet != histogramSets_.size(); currentHistogramSet++){
102  
103      string tempInputCollection = histogramSets_.at(currentHistogramSet).getParameter<string> ("inputCollection");
104      if(tempInputCollection == "muon-electron pairs") tempInputCollection = "electron-muon pairs";
105 +    if(tempInputCollection == "jet-electron pairs") tempInputCollection = "electron-jet pairs";
106 +    if(tempInputCollection == "jet-muon pairs") tempInputCollection = "muon-jet pairs";
107      if(tempInputCollection == "event-track pairs")   tempInputCollection = "track-event pairs";
108      if(tempInputCollection == "secondary muon-muon pairs")   tempInputCollection = "muon-secondary muon pairs";
109 <    if(tempInputCollection.find("pairs")==std::string::npos){ //just a single object
110 <      if(tempInputCollection.find("secondary")!=std::string::npos){//secondary object
111 <        int spaceIndex = tempInputCollection.find(" ");
112 <        int secondWordLength = tempInputCollection.size() - spaceIndex;
113 <        objectsToGet.push_back(tempInputCollection.substr(spaceIndex+1,secondWordLength));
109 >    if(tempInputCollection == "secondary electron-electron pairs")   tempInputCollection = "electron-secondary electron pairs";
110 >    if(tempInputCollection == "trigobj-electron pairs")   tempInputCollection = "electron-trigobj pairs";
111 >    if(tempInputCollection == "trigobj-muon pairs")   tempInputCollection = "muon-trigobj pairs";
112 >    if(tempInputCollection.find("pairs")==string::npos){ //just a single object
113 >      if(tempInputCollection.find("secondary")!=string::npos){//secondary object
114 >        int spaceIndex = tempInputCollection.find(" ");
115 >        int secondWordLength = tempInputCollection.size() - spaceIndex;
116 >        objectsToGet.push_back(tempInputCollection.substr(spaceIndex+1,secondWordLength));
117        }
118        else{
119 <        objectsToGet.push_back(tempInputCollection);
119 >        objectsToGet.push_back(tempInputCollection);
120        }
121        objectsToPlot.push_back(tempInputCollection);
122        objectsToCut.push_back(tempInputCollection);
123 <    }
124 <    else{//pair of objects, need to add the pair and the individual objects to the lists of things to Get/Plot/Cut
89 <      string obj1;
123 >    } else { //pair of objects, need to add the pair and the individual objects to the lists of things to Get/Plot/Cut
124 >      string obj1;
125        string obj2;
126        getTwoObjs(tempInputCollection, obj1, obj2);
127 <      string obj2ToGet = getObjToGet(obj2);  
127 >      string obj2ToGet = getObjToGet(obj2);
128        objectsToCut.push_back(tempInputCollection);
129        objectsToCut.push_back(obj1);
130 <      objectsToCut.push_back(obj2);  
130 >      objectsToCut.push_back(obj2);
131        objectsToPlot.push_back(tempInputCollection);
132        objectsToPlot.push_back(obj1);
133 <      objectsToPlot.push_back(obj2);  
133 >      objectsToPlot.push_back(obj2);
134        objectsToGet.push_back(tempInputCollection);
135        objectsToGet.push_back(obj1);
136        objectsToGet.push_back(obj2ToGet);
137 +    } // end else
138 +
139  
103 –    }
140  
141      vector<edm::ParameterSet> histogramList_  (histogramSets_.at(currentHistogramSet).getParameter<vector<edm::ParameterSet> >("histograms"));
142  
143      for(uint currentHistogram = 0; currentHistogram != histogramList_.size(); currentHistogram++){
144  
145 +      vector<double> defaultValue;
146 +      defaultValue.push_back (-1.0);
147 +
148        histogram tempHistogram;
149        tempHistogram.inputCollection = tempInputCollection;
150        tempHistogram.name = histogramList_.at(currentHistogram).getParameter<string>("name");
151        tempHistogram.title = histogramList_.at(currentHistogram).getParameter<string>("title");
152 <      tempHistogram.bins = histogramList_.at(currentHistogram).getParameter<vector<double> >("bins");
152 >      tempHistogram.bins = histogramList_.at(currentHistogram).getUntrackedParameter<vector<double> >("bins", defaultValue);
153 >      tempHistogram.variableBinsX = histogramList_.at(currentHistogram).getUntrackedParameter<vector<double> >("variableBinsX", defaultValue);
154 >      tempHistogram.variableBinsY = histogramList_.at(currentHistogram).getUntrackedParameter<vector<double> >("variableBinsY", defaultValue);
155        tempHistogram.inputVariables = histogramList_.at(currentHistogram).getParameter<vector<string> >("inputVariables");
156  
157        histograms.push_back(tempHistogram);
158  
159      }
160 <  }
160 >  } //   for(uint currentHistogramSet = 0; currentHistogramSet != histogramSets_.size(); currentHistogramSet++){
161 >
162    //make unique vector of objects we need to plot (so we can book a histogram with the number of each object)
163    sort( objectsToPlot.begin(), objectsToPlot.end() );
164    objectsToPlot.erase( unique( objectsToPlot.begin(), objectsToPlot.end() ), objectsToPlot.end() );
# Line 127 | Line 169 | OSUAnalysis::OSUAnalysis (const edm::Par
169    for(uint currentObjectIndex = 0; currentObjectIndex != objectsToPlot.size(); currentObjectIndex++){
170  
171      string currentObject = objectsToPlot.at(currentObjectIndex);
172 <    if(currentObject != "muons" && currentObject != "secondary muons" && currentObject != "electrons" && currentObject != "taus" && currentObject != "tracks" && currentObject != "photons" && currentObject != "superclusters") continue;
172 >    if(currentObject != "muons" && currentObject != "secondary muons" && currentObject != "secondary electrons" && currentObject != "electrons" && currentObject != "taus" && currentObject != "tracks" && currentObject != "photons" && currentObject != "superclusters") continue;
173  
174      histogram tempIdHisto;
175      histogram tempMomIdHisto;
176      histogram tempGmaIdHisto;
177      histogram tempIdVsMomIdHisto;
178 +    histogram tempIdVsGmaIdHisto;
179  
180      tempIdHisto.inputCollection = currentObject;
181      tempMomIdHisto.inputCollection = currentObject;
182      tempGmaIdHisto.inputCollection = currentObject;
183      tempIdVsMomIdHisto.inputCollection = currentObject;
184 +    tempIdVsGmaIdHisto.inputCollection = currentObject;
185  
186      if(currentObject == "secondary muons") currentObject = "secondaryMuons";
187 +    if(currentObject == "secondary electrons") currentObject = "secondaryElectrons";
188  
189      currentObject = currentObject.substr(0, currentObject.size()-1);
190      tempIdHisto.name = currentObject+"GenMatchId";
191      tempMomIdHisto.name = currentObject+"GenMatchMotherId";
192      tempGmaIdHisto.name = currentObject+"GenMatchGrandmotherId";
193      tempIdVsMomIdHisto.name = currentObject+"GenMatchIdVsMotherId";
194 +    tempIdVsGmaIdHisto.name = currentObject+"GenMatchIdVsGrandmotherId";
195  
196      currentObject.at(0) = toupper(currentObject.at(0));
197      tempIdHisto.title = currentObject+" Gen-matched Particle";
198      tempMomIdHisto.title = currentObject+" Gen-matched Particle's Mother";
199      tempGmaIdHisto.title = currentObject+" Gen-matched Particle's Grandmother";
200      tempIdVsMomIdHisto.title = currentObject+" Gen-matched Particle's Mother vs. Particle;Particle;Mother";
201 +    tempIdVsGmaIdHisto.title = currentObject+" Gen-matched Particle's Grandmother vs. Particle;Particle;Grandmother";
202 +
203  
204 <    int maxNum = 24;
204 >    int maxNum = 25;
205      vector<double> binVector;
206      binVector.push_back(maxNum);
207      binVector.push_back(0);
# Line 171 | Line 219 | OSUAnalysis::OSUAnalysis (const edm::Par
219      tempIdVsMomIdHisto.bins = binVector;
220      tempIdVsMomIdHisto.inputVariables.push_back("genMatchedId");
221      tempIdVsMomIdHisto.inputVariables.push_back("genMatchedMotherIdReverse");
222 +    tempIdVsGmaIdHisto.bins = binVector;
223 +    tempIdVsGmaIdHisto.inputVariables.push_back("genMatchedId");
224 +    tempIdVsGmaIdHisto.inputVariables.push_back("genMatchedGrandmotherIdReverse");
225  
226      histograms.push_back(tempIdHisto);
227      histograms.push_back(tempMomIdHisto);
228      histograms.push_back(tempGmaIdHisto);
229      histograms.push_back(tempIdVsMomIdHisto);
230 +    histograms.push_back(tempIdVsGmaIdHisto);
231    }
232  
233  
# Line 191 | Line 243 | OSUAnalysis::OSUAnalysis (const edm::Par
243      //set triggers for this channel
244      vector<string> triggerNames;
245      triggerNames.clear();
246 +    vector<string> triggerToVetoNames;
247 +    triggerToVetoNames.clear();
248 +
249      tempChannel.triggers.clear();
250 +    tempChannel.triggersToVeto.clear();
251      if(channels_.at(currentChannel).exists("triggers")){
252        triggerNames   = channels_.at(currentChannel).getParameter<vector<string> >("triggers");
253        for(uint trigger = 0; trigger!= triggerNames.size(); trigger++)
254          tempChannel.triggers.push_back(triggerNames.at(trigger));
255        objectsToGet.push_back("triggers");
256      }
257 <
257 >    if(channels_.at(currentChannel).exists("triggersToVeto")){
258 >      triggerToVetoNames = channels_.at(currentChannel).getParameter<vector<string> >("triggersToVeto");
259 >      for(uint trigger = 0; trigger!= triggerToVetoNames.size(); trigger++)
260 >        tempChannel.triggersToVeto.push_back(triggerToVetoNames.at(trigger));
261 >      objectsToGet.push_back("triggers");
262 >    }
263  
264  
265  
266      //create cutFlow for this channel
267      cutFlows_.push_back (new CutFlow (fs_, channelName));
268 <
269 <    //book a directory in the output file with the name of the channel
209 <    TFileDirectory subDir = fs_->mkdir( channelName );
210 <    directories.push_back(subDir);
211 <
212 <    std::map<std::string, TH1D*> oneDhistoMap;
213 <    oneDHists_.push_back(oneDhistoMap);
214 <    std::map<std::string, TH2D*> twoDhistoMap;
215 <    twoDHists_.push_back(twoDhistoMap);
216 <
217 <
218 <
219 <    //book all histograms included in the configuration
220 <    for(uint currentHistogramIndex = 0; currentHistogramIndex != histograms.size(); currentHistogramIndex++){
221 <      histogram currentHistogram = histograms.at(currentHistogramIndex);
222 <      int numBinsElements = currentHistogram.bins.size();
223 <      int numInputVariables = currentHistogram.inputVariables.size();
224 <
225 <      if(numBinsElements != 3 && numBinsElements !=6) {
226 <        std::cout << "Error: Didn't find correct number of bin specifications for histogram named '" << currentHistogram.name << "'\n";
227 <        exit(0);
228 <      }
229 <      else if((numBinsElements == 3 && numInputVariables !=1) || (numBinsElements == 6 && numInputVariables!=2)){
230 <        std::cout << "Error: Didn't find correct number of input variables for histogram named '" << currentHistogram.name << "'\n";
231 <        exit(0);
232 <      }
233 <      else if(numBinsElements == 3){
234 <        oneDHists_.at(currentChannel)[currentHistogram.name] = directories.at(currentChannel).make<TH1D> (TString(currentHistogram.name),channelLabel+" channel: "+currentHistogram.title, currentHistogram.bins.at(0), currentHistogram.bins.at(1), currentHistogram.bins.at(2));
235 <      }
236 <      else if(numBinsElements == 6){
237 <        twoDHists_.at(currentChannel)[currentHistogram.name] = directories.at(currentChannel).make<TH2D> (TString(currentHistogram.name),channelLabel+" channel: "+currentHistogram.title, currentHistogram.bins.at(0), currentHistogram.bins.at(1), currentHistogram.bins.at(2),currentHistogram.bins.at(3),currentHistogram.bins.at(4),currentHistogram.bins.at(5));
238 <
239 <      }
240 <
241 <
242 <      if(currentHistogram.name.find("GenMatch")==std::string::npos) continue;
243 <
244 <      // bin      particle type
245 <      // ---      -------------
246 <      //  0        unmatched
247 <      //  1        u
248 <      //  2        d
249 <      //  3        s
250 <      //  4        c
251 <      //  5        b
252 <      //  6        t
253 <      //  7        e
254 <      //  8        mu
255 <      //  9        tau
256 <      // 10        nu
257 <      // 11        g
258 <      // 12        gamma
259 <      // 13        Z
260 <      // 14        W
261 <      // 15        light meson
262 <      // 16        K meson
263 <      // 17        D meson
264 <      // 18        B meson
265 <      // 19        light baryon
266 <      // 20        strange baryon
267 <      // 21        charm baryon
268 <      // 22        bottom baryon
269 <      // 23        other
270 <
271 <      vector<TString> labelArray;
272 <      labelArray.push_back("unmatched");
273 <      labelArray.push_back("u");
274 <      labelArray.push_back("d");
275 <      labelArray.push_back("s");
276 <      labelArray.push_back("c");
277 <      labelArray.push_back("b");
278 <      labelArray.push_back("t");
279 <      labelArray.push_back("e");
280 <      labelArray.push_back("#mu");
281 <      labelArray.push_back("#tau");
282 <      labelArray.push_back("#nu");
283 <      labelArray.push_back("g");
284 <      labelArray.push_back("#gamma");
285 <      labelArray.push_back("Z");
286 <      labelArray.push_back("W");
287 <      labelArray.push_back("light meson");
288 <      labelArray.push_back("K meson");
289 <      labelArray.push_back("D meson");
290 <      labelArray.push_back("B meson");
291 <      labelArray.push_back("light baryon");
292 <      labelArray.push_back("strange baryon");
293 <      labelArray.push_back("charm baryon");
294 <      labelArray.push_back("bottom baryon");
295 <      labelArray.push_back("other");
296 <
297 <      for(int bin = 0; bin !=currentHistogram.bins.at(0); bin++){
298 <        if(currentHistogram.name.find("GenMatchIdVsMotherId")==std::string::npos) {
299 <          oneDHists_.at(currentChannel)[currentHistogram.name]->GetXaxis()->SetBinLabel(bin+1,labelArray.at(bin));
300 <        }
301 <        else {
302 <          twoDHists_.at(currentChannel)[currentHistogram.name]->GetYaxis()->SetBinLabel(bin+1,labelArray.at(currentHistogram.bins.at(0)-bin-1));
303 <          twoDHists_.at(currentChannel)[currentHistogram.name]->GetXaxis()->SetBinLabel(bin+1,labelArray.at(bin));
304 <        }
305 <      }
306 <      if(currentHistogram.name.find("GenMatchIdVsMotherId")!=std::string::npos) {
307 <        twoDHists_.at(currentChannel)[currentHistogram.name]->GetXaxis()->CenterTitle();
308 <        twoDHists_.at(currentChannel)[currentHistogram.name]->GetYaxis()->CenterTitle();
309 <      }
310 <
311 <    }
312 <
313 <    // Book a histogram for the number of each object type to be plotted.  
314 <    // Name of objectToPlot here must match the name specified in OSUAnalysis::analyze().  
315 <    for (uint currentObjectIndex = 0; currentObjectIndex != objectsToPlot.size(); currentObjectIndex++){
316 <      string currentObject = objectsToPlot.at(currentObjectIndex);
317 <      int maxNum = 10;
318 <      if(currentObject == "mcparticles") maxNum = 50;
319 <      else if(currentObject == "primaryvertexs") maxNum = 50;
320 <
321 <      if(currentObject == "muon-muon pairs")                currentObject = "dimuonPairs";
322 <      else if(currentObject == "electron-electron pairs")   currentObject = "dielectronPairs";
323 <      else if(currentObject == "electron-muon pairs")       currentObject = "electronMuonPairs";
324 <      else if(currentObject == "track-event pairs")         currentObject = "trackEventPairs";
325 <      else if(currentObject == "electron-track pairs")      currentObject = "electronTrackPairs";        
326 <      else if(currentObject == "muon-track pairs")          currentObject = "muonTrackPairs";    
327 <      else if(currentObject == "muon-tau pairs")            currentObject = "muonTauPairs";      
328 <      else if(currentObject == "tau-tau pairs")             currentObject = "ditauPairs";
329 <      else if(currentObject == "tau-track pairs")           currentObject = "tauTrackPairs";
330 <      else if(currentObject == "muon-secondary muon pairs") currentObject = "muonSecondaryMuonPairs";
331 <      else if(currentObject == "secondary muons")           currentObject = "secondaryMuons";
332 <
333 <      currentObject.at(0) = toupper(currentObject.at(0));  
334 <      string histoName = "num" + currentObject;
335 <
336 <      if(histoName == "numPrimaryvertexs"){
337 <        string newHistoName = histoName + "BeforePileupCorrection";
338 <        oneDHists_.at(currentChannel)[newHistoName] = directories.at(currentChannel).make<TH1D> (TString(newHistoName),channelLabel+" channel: Number of Selected "+currentObject+" Before Pileup Correction; # "+currentObject, maxNum, 0, maxNum);
339 <        newHistoName = histoName + "AfterPileupCorrection";
340 <        oneDHists_.at(currentChannel)[newHistoName] = directories.at(currentChannel).make<TH1D> (TString(newHistoName),channelLabel+" channel: Number of Selected "+currentObject+ " After Pileup Correction; # "+currentObject, maxNum, 0, maxNum);
341 <      }
342 <      else
343 <        oneDHists_.at(currentChannel)[histoName] = directories.at(currentChannel).make<TH1D> (TString(histoName),channelLabel+" channel: Number of Selected "+currentObject+"; # "+currentObject, maxNum, 0, maxNum);
344 <    }
345 <
346 <
347 <
348 <
268 >    vector<TFileDirectory> directories; //vector of directories in the output file.
269 >    vector<string> subSubDirNames;//subdirectories in each channel.
270      //get list of cuts for this channel
271      vector<edm::ParameterSet> cuts_  (channels_.at(currentChannel).getParameter<vector<edm::ParameterSet> >("cuts"));
272  
273 +
274      //loop over and parse all cuts
275      for(uint currentCut = 0; currentCut != cuts_.size(); currentCut++){
276        cut tempCut;
277        //store input collection for cut
278        string tempInputCollection = cuts_.at(currentCut).getParameter<string> ("inputCollection");
279        if(tempInputCollection == "muon-electron pairs") tempInputCollection = "electron-muon pairs";
280 +      if(tempInputCollection == "jet-electron pairs") tempInputCollection = "electron-jet pairs";
281 +      if(tempInputCollection == "jet-muon pairs") tempInputCollection = "muon-jet pairs";
282        if(tempInputCollection == "event-track pairs")   tempInputCollection = "track-event pairs";
283        if(tempInputCollection == "secondary muon-muon pairs")   tempInputCollection = "muon-secondary muon pairs";
284 +      if(tempInputCollection == "secondary electron-electron pairs")   tempInputCollection = "electron-secondary electron pairs";
285 +      if(tempInputCollection == "trigobj-electron pairs")   tempInputCollection = "electron-trigobj pairs";
286 +      if(tempInputCollection == "trigobj-muon pairs")   tempInputCollection = "muon-trigobj pairs";
287        tempCut.inputCollection = tempInputCollection;
288 <      if(tempInputCollection.find("pairs")==std::string::npos){ //just a single object
289 <        if(tempInputCollection.find("secondary")!=std::string::npos){//secondary object
290 <          int spaceIndex = tempInputCollection.find(" ");
291 <          int secondWordLength = tempInputCollection.size() - spaceIndex;
292 <          objectsToGet.push_back(tempInputCollection.substr(spaceIndex+1,secondWordLength));
293 <        }
294 <        else{
295 <          objectsToGet.push_back(tempInputCollection);
296 <        }
297 <        objectsToCut.push_back(tempInputCollection);
288 >      if(tempInputCollection.find("pairs")==string::npos){ //just a single object
289 >        if(tempInputCollection.find("secondary")!=string::npos){//secondary object
290 >          int spaceIndex = tempInputCollection.find(" ");
291 >          int secondWordLength = tempInputCollection.size() - spaceIndex;
292 >          objectsToGet.push_back(tempInputCollection.substr(spaceIndex+1,secondWordLength));
293 >        }
294 >        else{
295 >          objectsToGet.push_back(tempInputCollection);
296 >        }
297 >        objectsToCut.push_back(tempInputCollection);
298        }
299        else{//pair of objects, need to add them both to objectsToGet
300 <        string obj1;
301 <        string obj2;
302 <        getTwoObjs(tempInputCollection, obj1, obj2);
303 <        string obj2ToGet = getObjToGet(obj2);  
300 >        string obj1;
301 >        string obj2;
302 >        getTwoObjs(tempInputCollection, obj1, obj2);
303 >        string obj2ToGet = getObjToGet(obj2);
304          objectsToCut.push_back(tempInputCollection);
305          objectsToCut.push_back(obj1);
306 <        objectsToCut.push_back(obj2);  
306 >        objectsToCut.push_back(obj2);
307          objectsToGet.push_back(tempInputCollection);
308          objectsToGet.push_back(obj1);
309          objectsToGet.push_back(obj2ToGet);
# Line 387 | Line 314 | OSUAnalysis::OSUAnalysis (const edm::Par
314  
315        //split cut string into parts and store them
316        string cutString = cuts_.at(currentCut).getParameter<string> ("cutString");
317 <      std::vector<string> cutStringVector = splitString(cutString);
317 >      vector<string> cutStringVector = splitString(cutString);
318        if(cutStringVector.size()!=3 && cutStringVector.size() % 4 !=3){
319 <        std::cout << "Error: Didn't find the expected number elements in the following cut string: '" << cutString << "'\n";
319 >        cout << "Error: Didn't find the expected number elements in the following cut string: '" << cutString << "'\n";
320          exit(0);
321        }
322        tempCut.numSubcuts = (cutStringVector.size()+1)/4;
323        for(int subcutIndex = 0; subcutIndex != tempCut.numSubcuts; subcutIndex++){//loop over all the pieces of the cut combined using &,|
324          int indexOffset = 4 * subcutIndex;
325          string currentVariableString = cutStringVector.at(indexOffset);
326 <        if(currentVariableString.find("(")==std::string::npos){
326 >        if(currentVariableString.find("(")==string::npos){
327            tempCut.functions.push_back("");//no function was specified
328            tempCut.variables.push_back(currentVariableString);// variable to cut on
329          }
# Line 407 | Line 334 | OSUAnalysis::OSUAnalysis (const edm::Par
334          }
335          tempCut.comparativeOperators.push_back(cutStringVector.at(indexOffset+1));// comparison to make
336          tempCut.cutValues.push_back(atof(cutStringVector.at(indexOffset+2).c_str()));// threshold value to pass cut
337 +        tempCut.cutStringValues.push_back(cutStringVector.at(indexOffset+2));// string value to pass cut
338          if(subcutIndex != 0) tempCut.logicalOperators.push_back(cutStringVector.at(indexOffset-1)); // logical comparison (and, or)
339        }
340  
341        //get number of objects required to pass cut for event to pass
342        string numberRequiredString = cuts_.at(currentCut).getParameter<string> ("numberRequired");
343 <      std::vector<string> numberRequiredVector = splitString(numberRequiredString);
343 >      vector<string> numberRequiredVector = splitString(numberRequiredString);
344        if(numberRequiredVector.size()!=2){
345 <        std::cout << "Error: Didn't find two elements in the following number requirement string: '" << numberRequiredString << "'\n";
345 >        cout << "Error: Didn't find two elements in the following number requirement string: '" << numberRequiredString << "'\n";
346          exit(0);
347        }
348  
# Line 422 | Line 350 | OSUAnalysis::OSUAnalysis (const edm::Par
350        tempCut.numberRequired = numberRequiredInt;// number of objects required to pass the cut
351        tempCut.eventComparativeOperator = numberRequiredVector.at(0);// comparison to make
352  
353 <
353 >      //Set up vectors to store the directories and subDIrectories for each channel.
354 >      string subSubDirName;
355        string tempCutName;
356        if(cuts_.at(currentCut).exists("alias")){
357          tempCutName = cuts_.at(currentCut).getParameter<string> ("alias");
358 +        subSubDirName = "After " + cuts_.at(currentCut).getParameter<string> ("alias") + " Cut Applied";
359        }
360        else{
361          //construct string for cutflow table
# Line 433 | Line 363 | OSUAnalysis::OSUAnalysis (const edm::Par
363          string collectionString = plural ? tempInputCollection : tempInputCollection.substr(0, tempInputCollection.size()-1);
364          string cutName =  numberRequiredString + " " + collectionString + " with " + cutString;
365          tempCutName = cutName;
366 +        subSubDirName = "After " + numberRequiredString + " " + collectionString + " with " + cutString + " Cut Applied";
367        }
368 +
369 +      subSubDirNames.push_back(subSubDirName);
370        tempCut.name = tempCutName;
371  
372        tempChannel.cuts.push_back(tempCut);
# Line 441 | Line 374 | OSUAnalysis::OSUAnalysis (const edm::Par
374  
375      }//end loop over cuts
376  
377 +    vector<map<string, TH1D*>> oneDHistsTmp;
378 +    vector<map<string, TH2D*>> twoDHistsTmp;
379 +    //book a directory in the output file with the name of the channel
380 +    TFileDirectory subDir = fs_->mkdir( channelName );
381 +    //loop over the cuts to set up subdirectory for each cut if GetPlotsAfterEachCut_ is true.
382 +    if(GetPlotsAfterEachCut_){
383 +      for( uint currentDir=0; currentDir != subSubDirNames.size(); currentDir++){
384 +        TFileDirectory subSubDir = subDir.mkdir( subSubDirNames[currentDir] );
385 +        directories.push_back(subSubDir);
386 +        map<string, TH1D*> oneDhistoMap;
387 +        oneDHistsTmp.push_back(oneDhistoMap);
388 +        map<string, TH2D*> twoDhistoMap;
389 +        twoDHistsTmp.push_back(twoDhistoMap);
390 +      }
391 +      oneDHists_.push_back(oneDHistsTmp);
392 +      twoDHists_.push_back(twoDHistsTmp);
393 +    }
394 +    //only set up directories with names of the channels if GetPlotsAfterEachCut_ is false.
395 +    else{
396 +      map<string, TH1D*> oneDhistoMap;
397 +      oneDHistsTmp.push_back(oneDhistoMap);
398 +      map<string, TH2D*> twoDhistoMap;
399 +      twoDHistsTmp.push_back(twoDhistoMap);
400 +      oneDHists_.push_back(oneDHistsTmp);
401 +      twoDHists_.push_back(twoDHistsTmp);
402 +      directories.push_back(subDir);
403 +
404 +    }
405 +
406 +
407 +    //book all histograms included in the configuration
408 +    for(uint currentDir = 0; currentDir != directories.size(); currentDir++){//loop over all the directories.
409 +      
410 +      TTree* newTree = directories.at(currentDir).make<TTree> (TString("BNTree_"+channelLabel), TString("BNTree_"+channelLabel));  
411 +      BNTrees_.push_back(newTree);      
412 +      for (uint iBranch = 0; iBranch < treeBranches_.size(); iBranch++){
413 +        BranchSpecs currentVar = treeBranches_.at(iBranch);
414 +        vector<float> newVec;  
415 +        BNTreeBranchVals_[currentVar.name] = newVec;  
416 +        BNTrees_.back()->Branch(TString(currentVar.name), &BNTreeBranchVals_.at(currentVar.name));
417 +      } // end for (uint iBranch = 0; iBranch < treeBranches_.size(); iBranch++){
418 +
419 +      for(uint currentHistogramIndex = 0; currentHistogramIndex != histograms.size(); currentHistogramIndex++){
420 +
421 +        histogram currentHistogram = histograms.at(currentHistogramIndex);
422 +        int numBinsElements = currentHistogram.bins.size();
423 +        int numInputVariables = currentHistogram.inputVariables.size();
424 +        int numBinEdgesX = currentHistogram.variableBinsX.size();
425 +        int numBinEdgesY = currentHistogram.variableBinsY.size();
426 +        
427 +        if(numBinsElements == 1){
428 +          if(numBinEdgesX > 1){
429 +            if(numBinEdgesY > 1)
430 +              numBinsElements = 6;
431 +            else
432 +              numBinsElements = 3;
433 +          }
434 +        }
435 +        if(numBinsElements != 3 && numBinsElements !=6){
436 +          cout << "Error: Didn't find correct number of bin specifications for histogram named '" << currentHistogram.name << "'\n";
437 +          exit(0);
438 +        }
439 +        else if((numBinsElements == 3 && numInputVariables !=1) || (numBinsElements == 6 && numInputVariables!=2)){
440 +          cout << "Error: Didn't find correct number of input variables for histogram named '" << currentHistogram.name << "'\n";
441 +          exit(0);
442 +        }
443 +        else if(numBinsElements == 3){
444 +          if (currentHistogram.bins.size () == 3)
445 +            oneDHists_.at(currentChannel).at(currentDir)[currentHistogram.name] = directories.at(currentDir).make<TH1D> (TString(currentHistogram.name),channelLabel+" channel: "+currentHistogram.title, currentHistogram.bins.at(0), currentHistogram.bins.at(1), currentHistogram.bins.at(2));
446 +          else
447 +            {
448 +              oneDHists_.at(currentChannel).at(currentDir)[currentHistogram.name] = directories.at(currentDir).make<TH1D> (TString(currentHistogram.name),channelLabel+" channel: "+currentHistogram.title, numBinEdgesX - 1, currentHistogram.variableBinsX.data ());
449 +            }
450 +        }
451 +        else if(numBinsElements == 6){
452 +          if (currentHistogram.bins.size () == 6)
453 +            twoDHists_.at(currentChannel).at(currentDir)[currentHistogram.name] = directories.at(currentDir).make<TH2D> (TString(currentHistogram.name),channelLabel+" channel: "+currentHistogram.title, currentHistogram.bins.at(0), currentHistogram.bins.at(1), currentHistogram.bins.at(2),currentHistogram.bins.at(3),currentHistogram.bins.at(4),currentHistogram.bins.at(5));
454 +          else
455 +            twoDHists_.at(currentChannel).at(currentDir)[currentHistogram.name] = directories.at(currentDir).make<TH2D> (TString(currentHistogram.name),channelLabel+" channel: "+currentHistogram.title, numBinEdgesX - 1, currentHistogram.variableBinsX.data (), numBinEdgesY - 1, currentHistogram.variableBinsY.data ());
456 +        }
457 +
458 +
459 +        if(currentHistogram.name.find("GenMatch")==string::npos) continue;
460 +
461 +        // bin      particle type
462 +        // ---      -------------
463 +        //  0        unmatched
464 +        //  1        u
465 +        //  2        d
466 +        //  3        s
467 +        //  4        c
468 +        //  5        b
469 +        //  6        t
470 +        //  7        e
471 +        //  8        mu
472 +        //  9        tau
473 +        // 10        nu
474 +        // 11        g
475 +        // 12        gamma
476 +        // 13        Z
477 +        // 14        W
478 +        // 15        light meson
479 +        // 16        K meson
480 +        // 17        D meson
481 +        // 18        B meson
482 +        // 19        light baryon
483 +        // 20        strange baryon
484 +        // 21        charm baryon
485 +        // 22        bottom baryon
486 +        // 23        QCD string
487 +        // 24        other
488 +
489 +        vector<TString> labelArray;
490 +        labelArray.push_back("unmatched");
491 +        labelArray.push_back("u");
492 +        labelArray.push_back("d");
493 +        labelArray.push_back("s");
494 +        labelArray.push_back("c");
495 +        labelArray.push_back("b");
496 +        labelArray.push_back("t");
497 +        labelArray.push_back("e");
498 +        labelArray.push_back("#mu");
499 +        labelArray.push_back("#tau");
500 +        labelArray.push_back("#nu");
501 +        labelArray.push_back("g");
502 +        labelArray.push_back("#gamma");
503 +        labelArray.push_back("Z");
504 +        labelArray.push_back("W");
505 +        labelArray.push_back("light meson");
506 +        labelArray.push_back("K meson");
507 +        labelArray.push_back("D meson");
508 +        labelArray.push_back("B meson");
509 +        labelArray.push_back("light baryon");
510 +        labelArray.push_back("strange baryon");
511 +        labelArray.push_back("charm baryon");
512 +        labelArray.push_back("bottom baryon");
513 +        labelArray.push_back("QCD string");
514 +        labelArray.push_back("other");
515 +
516 +        for(int bin = 0; bin !=currentHistogram.bins.at(0); bin++){
517 +          if(currentHistogram.name.find("GenMatchIdVsMotherId")==string::npos && currentHistogram.name.find("GenMatchIdVsGrandmotherId")==string::npos) {
518 +            oneDHists_.at(currentChannel).at(currentDir)[currentHistogram.name]->GetXaxis()->SetBinLabel(bin+1,labelArray.at(bin));
519 +          }
520 +          else {
521 +            twoDHists_.at(currentChannel).at(currentDir)[currentHistogram.name]->GetYaxis()->SetBinLabel(bin+1,labelArray.at(currentHistogram.bins.at(0)-bin-1));
522 +            twoDHists_.at(currentChannel).at(currentDir)[currentHistogram.name]->GetXaxis()->SetBinLabel(bin+1,labelArray.at(bin));
523 +          }
524 +        }
525 +        if(currentHistogram.name.find("GenMatchIdVsMotherId")!=string::npos || currentHistogram.name.find("GenMatchIdVsGrandmotherId")!=string::npos) {
526 +          twoDHists_.at(currentChannel).at(currentDir)[currentHistogram.name]->GetXaxis()->CenterTitle();
527 +          twoDHists_.at(currentChannel).at(currentDir)[currentHistogram.name]->GetYaxis()->CenterTitle();
528 +        }
529 +
530 +      }  // end      for(uint currentHistogramIndex = 0; currentHistogramIndex != histograms.size(); currentHistogramIndex++){
531 +
532 +
533 +      // Book a histogram for the number of each object type to be plotted.
534 +      // Name of objectToPlot here must match the name specified in OSUAnalysis::analyze().
535 +      for (uint currentObjectIndex = 0; currentObjectIndex != objectsToPlot.size(); currentObjectIndex++){
536 +        string currentObject = objectsToPlot.at(currentObjectIndex);
537 +        int maxNum = 10;
538 +        if(currentObject == "mcparticles") maxNum = 50;
539 +        else if(currentObject == "primaryvertexs") maxNum = 50;
540 +
541 +        if(currentObject == "muon-muon pairs")                currentObject = "dimuonPairs";
542 +        else if(currentObject == "electron-electron pairs")   currentObject = "dielectronPairs";
543 +        else if(currentObject == "electron-muon pairs")       currentObject = "electronMuonPairs";
544 +        else if(currentObject == "secondary jets")            currentObject = "secondaryJets";
545 +        else if(currentObject == "jet-jet pairs")             currentObject = "dijetPairs";
546 +        else if(currentObject == "electron-jet pairs")        currentObject = "electronJetPairs";
547 +        else if(currentObject == "muon-jet pairs")            currentObject = "muonJetPairs";
548 +        else if(currentObject == "track-event pairs")         currentObject = "trackEventPairs";
549 +        else if(currentObject == "electron-track pairs")      currentObject = "electronTrackPairs";
550 +        else if(currentObject == "muon-track pairs")          currentObject = "muonTrackPairs";
551 +        else if(currentObject == "muon-tau pairs")            currentObject = "muonTauPairs";
552 +        else if(currentObject == "tau-tau pairs")             currentObject = "ditauPairs";
553 +        else if(currentObject == "tau-track pairs")           currentObject = "tauTrackPairs";
554 +        else if(currentObject == "muon-secondary muon pairs") currentObject = "muonSecondaryMuonPairs";
555 +        else if(currentObject == "secondary muons")           currentObject = "secondaryMuons";
556 +        else if(currentObject == "electron-secondary electron pairs") currentObject = "electronSecondaryElectronPairs";
557 +        else if(currentObject == "secondary electrons")       currentObject = "secondaryElectrons";
558 +        else if(currentObject == "electron-trigobj pairs")    currentObject = "electronTrigobjPairs";
559 +        else if(currentObject == "muon-trigobj pairs")        currentObject = "muonTrigobjPairs";
560 +
561 +        currentObject.at(0) = toupper(currentObject.at(0));
562 +        string histoName = "num" + currentObject;
563 +
564 +        if(histoName == "numPrimaryvertexs"){
565 +          string newHistoName = histoName + "BeforePileupCorrection";
566 +          oneDHists_.at(currentChannel).at(currentDir)[newHistoName] = directories.at(currentDir).make<TH1D> (TString(newHistoName),channelLabel+" channel: Number of Selected "+currentObject+" Before Pileup Correction; # "+currentObject, maxNum, 0, maxNum);
567 +          newHistoName = histoName + "AfterPileupCorrection";
568 +          oneDHists_.at(currentChannel).at(currentDir)[newHistoName] = directories.at(currentDir).make<TH1D> (TString(newHistoName),channelLabel+" channel: Number of Selected "+currentObject+ " After Pileup Correction; # "+currentObject, maxNum, 0, maxNum);
569 +        }
570 +        else
571 +          oneDHists_.at(currentChannel).at(currentDir)[histoName] = directories.at(currentDir).make<TH1D> (TString(histoName),channelLabel+" channel: Number of Selected "+currentObject+"; # "+currentObject, maxNum, 0, maxNum);
572 +      }
573 +    }//end of loop over directories
574      channels.push_back(tempChannel);
575      tempChannel.cuts.clear();
446 –
576    }//end loop over channels
577  
578  
# Line 455 | Line 584 | OSUAnalysis::OSUAnalysis (const edm::Par
584    objectsToCut.erase( unique( objectsToCut.begin(), objectsToCut.end() ), objectsToCut.end() );
585  
586  
587 < }
587 > } // end constructor OSUAnalysis::OSUAnalysis()
588 >
589  
590   OSUAnalysis::~OSUAnalysis ()
591   {
592 +
593    // Destroying the CutFlow objects causes the cut flow numbers and time
594    // information to be printed to standard output.
595    for(uint currentChannel = 0; currentChannel != channels_.size(); currentChannel++){
# Line 472 | Line 603 | OSUAnalysis::analyze (const edm::Event &
603  
604    // Retrieve necessary collections from the event.
605  
606 <  if (std::find(objectsToGet.begin(), objectsToGet.end(), "triggers") != objectsToGet.end())
606 >  if (find(objectsToGet.begin(), objectsToGet.end(), "triggers") != objectsToGet.end())
607      event.getByLabel (triggers_, triggers);
608  
609 <  if (std::find(objectsToGet.begin(), objectsToGet.end(), "jets") != objectsToGet.end())
609 >  if (find(objectsToGet.begin(), objectsToGet.end(), "trigobjs") != objectsToGet.end())
610 >    event.getByLabel (trigobjs_, trigobjs);
611 >
612 >  if (find(objectsToGet.begin(), objectsToGet.end(), "jets") != objectsToGet.end())
613      event.getByLabel (jets_, jets);
614  
615 <  if (std::find(objectsToGet.begin(), objectsToGet.end(), "muons") != objectsToGet.end())
615 >  if (find(objectsToGet.begin(), objectsToGet.end(), "muons") != objectsToGet.end())
616      event.getByLabel (muons_, muons);
617  
618 <  if (std::find(objectsToGet.begin(), objectsToGet.end(), "electrons") != objectsToGet.end())
618 >  if (find(objectsToGet.begin(), objectsToGet.end(), "electrons") != objectsToGet.end())
619      event.getByLabel (electrons_, electrons);
620  
621 <  if (std::find(objectsToGet.begin(), objectsToGet.end(), "events") != objectsToGet.end())
621 >  if (find(objectsToGet.begin(), objectsToGet.end(), "events") != objectsToGet.end())
622      event.getByLabel (events_, events);
623  
624 <  if (std::find(objectsToGet.begin(), objectsToGet.end(), "taus") != objectsToGet.end())
624 >  if (find(objectsToGet.begin(), objectsToGet.end(), "taus") != objectsToGet.end())
625      event.getByLabel (taus_, taus);
626  
627 <  if (std::find(objectsToGet.begin(), objectsToGet.end(), "mets") != objectsToGet.end())
627 >  if (find(objectsToGet.begin(), objectsToGet.end(), "mets") != objectsToGet.end())
628      event.getByLabel (mets_, mets);
629  
630 <  if (std::find(objectsToGet.begin(), objectsToGet.end(), "tracks") != objectsToGet.end())
630 >  if (find(objectsToGet.begin(), objectsToGet.end(), "tracks") != objectsToGet.end())
631      event.getByLabel (tracks_, tracks);
632  
633 <  if (std::find(objectsToGet.begin(), objectsToGet.end(), "genjets") != objectsToGet.end())
633 >  if (find(objectsToGet.begin(), objectsToGet.end(), "genjets") != objectsToGet.end())
634      event.getByLabel (genjets_, genjets);
635  
636 <  if (std::find(objectsToGet.begin(), objectsToGet.end(), "mcparticles") != objectsToGet.end())
636 >  if (find(objectsToGet.begin(), objectsToGet.end(), "mcparticles") != objectsToGet.end())
637      event.getByLabel (mcparticles_, mcparticles);
638  
639 <  if (std::find(objectsToGet.begin(), objectsToGet.end(), "primaryvertexs") != objectsToGet.end())
639 >  if (find(objectsToGet.begin(), objectsToGet.end(), "primaryvertexs") != objectsToGet.end())
640      event.getByLabel (primaryvertexs_, primaryvertexs);
641  
642 <  if (std::find(objectsToGet.begin(), objectsToGet.end(), "bxlumis") != objectsToGet.end())
642 >  if (find(objectsToGet.begin(), objectsToGet.end(), "bxlumis") != objectsToGet.end())
643      event.getByLabel (bxlumis_, bxlumis);
644  
645 <  if (std::find(objectsToGet.begin(), objectsToGet.end(), "photons") != objectsToGet.end())
645 >  if (find(objectsToGet.begin(), objectsToGet.end(), "photons") != objectsToGet.end())
646      event.getByLabel (photons_, photons);
647  
648 <  if (std::find(objectsToGet.begin(), objectsToGet.end(), "superclusters") != objectsToGet.end())
648 >  if (find(objectsToGet.begin(), objectsToGet.end(), "superclusters") != objectsToGet.end())
649      event.getByLabel (superclusters_, superclusters);
650  
651 <  if (useTrackCaloRhoCorr_) {  
652 <    // Used only for pile-up correction of by-hand calculation of isolation energy.  
653 <    // This rho collection is not available in all BEANs.  
651 >  if (datasetType_ == "signalMC"){
652 >    if (find(objectsToGet.begin(), objectsToGet.end(), "stops") != objectsToGet.end())
653 >      event.getByLabel (stops_, stops);
654 >  }
655 >
656 >  if (useTrackCaloRhoCorr_) {
657 >    // Used only for pile-up correction of by-hand calculation of isolation energy.
658 >    // This rho collection is not available in all BEANs.
659      // For description of rho values for different jet reconstruction algorithms, see
660 <    // https://twiki.cern.ch/twiki/bin/view/CMS/JetAlgorithms#Algorithms  
661 <    event.getByLabel ("kt6CaloJets","rho", rhokt6CaloJetsHandle_);
660 >    // https://twiki.cern.ch/twiki/bin/view/CMS/JetAlgorithms#Algorithms
661 >    event.getByLabel ("kt6CaloJets","rho", rhokt6CaloJetsHandle_);
662    }
663  
664 +  double masterScaleFactor = 1.0;
665  
666    //get pile-up event weight
667 <  double scaleFactor = 1.00;
668 <  if(doPileupReweighting_ && datasetType_ != "data")
669 <    scaleFactor = puWeight_->at (events->at (0).numTruePV);
670 <
671 <  cTauScaleFactor_ = 1.0;
672 < #ifdef DISPLACED_SUSY
673 <  if (datasetType_ == "signalMC")
674 <    cTauScaleFactor_ = cTauWeight_->at (event);
675 < #endif
676 <  scaleFactor *= cTauScaleFactor_;
667 >  if (doPileupReweighting_ && datasetType_ != "data") {
668 >    //for "data" datasets, the numTruePV is always set to -1
669 >    if (events->at(0).numTruePV < 0) cout << "WARNING[OSUAnalysis::analyze]: Event has numTruePV<0.  Turning off pile-up reweighting." << endl;  
670 >    else masterScaleFactor *= puWeight_->at (events->at (0).numTruePV);  
671 >  }
672 >
673 >  stopCTauScaleFactor_ = 1.0;
674 >  if (datasetType_ == "signalMC" && regex_match (dataset_, regex ("stop.*to.*_.*mm.*")))
675 >    stopCTauScaleFactor_ = stopCTauWeight_->at (event);
676 >  masterScaleFactor *= stopCTauScaleFactor_;
677  
678    //loop over all channels
679  
# Line 544 | Line 684 | OSUAnalysis::analyze (const edm::Event &
684      counterMap passingCounter;
685      cumulativeFlags.clear ();
686  
687 +    for (map<string, vector<float>>::iterator iter = BNTreeBranchVals_.begin();
688 +         iter != BNTreeBranchVals_.end(); iter++) {
689 +      iter->second.clear();  // clear array
690 +    }
691 +
692      bool triggerDecision = true;
693 <    if(currentChannel.triggers.size() != 0){  //triggers specified
694 <      triggerDecision = evaluateTriggers(currentChannel.triggers,triggers.product());
693 >    if(currentChannel.triggers.size() != 0 || currentChannel.triggersToVeto.size() != 0){  //triggers specified
694 >      triggerDecision = evaluateTriggers(currentChannel.triggers, currentChannel.triggersToVeto, triggers.product());
695        cutFlows_.at(currentChannelIndex)->at ("trigger") = triggerDecision;
696      }
697  
698      //loop over all cuts
554 –
555 –
556 –
699      for(uint currentCutIndex = 0; currentCutIndex != currentChannel.cuts.size(); currentCutIndex++){
700        cut currentCut = currentChannel.cuts.at(currentCutIndex);
559 –
701        for(uint currentObjectIndex = 0; currentObjectIndex != objectsToCut.size(); currentObjectIndex++){
702          string currentObject = objectsToCut.at(currentObjectIndex);
703  
# Line 571 | Line 712 | OSUAnalysis::analyze (const edm::Event &
712          int flagsForPairCutsIndex = max(int(currentCutIndex-1),0);
713  
714  
715 <        if(currentObject == "jets") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,jets.product(),"jets");
716 <
717 <        else if(currentObject == "muons") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,muons.product(),"muons");
577 <
715 >        if     (currentObject == "jets")            setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,jets.product(),"jets");
716 >        else if(currentObject == "secondary jets")  setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,jets.product(),"secondary jets");
717 >        else if(currentObject == "muons")           setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,muons.product(),"muons");
718          else if(currentObject == "secondary muons") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,muons.product(),"secondary muons");
719 +        else if(currentObject == "secondary electrons") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,electrons.product(),"secondary electrons");
720          else if(currentObject == "electrons") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,electrons.product(),"electrons");
721          else if(currentObject == "events") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,events.product(),"events");
722          else if(currentObject == "taus") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,taus.product(),"taus");
# Line 587 | Line 728 | OSUAnalysis::analyze (const edm::Event &
728          else if(currentObject == "bxlumis") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,bxlumis.product(),"bxlumis");
729          else if(currentObject == "photons") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,photons.product(),"photons");
730          else if(currentObject == "superclusters") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,superclusters.product(),"superclusters");
731 +        else if(currentObject == "trigobjs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,trigobjs.product(),"trigobjs");
732 +
733  
734  
735          else if(currentObject == "muon-muon pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,muons.product(),muons.product(), \
# Line 595 | Line 738 | OSUAnalysis::analyze (const edm::Event &
738                                                                     "muon-muon pairs");
739  
740          else if(currentObject == "muon-secondary muon pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,muons.product(),muons.product(), \
741 <                                                                   cumulativeFlags.at("muons").at(flagsForPairCutsIndex), \
742 <                                                                   cumulativeFlags.at("secondary muons").at(flagsForPairCutsIndex), \
743 <                                                                   "muon-secondary muon pairs");
741 >                                                                             cumulativeFlags.at("muons").at(flagsForPairCutsIndex), \
742 >                                                                             cumulativeFlags.at("secondary muons").at(flagsForPairCutsIndex), \
743 >                                                                             "muon-secondary muon pairs");
744 >
745 >        else if(currentObject == "electron-secondary electron pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,electrons.product(),electrons.product(), \
746 >                                                                                     cumulativeFlags.at("electrons").at(flagsForPairCutsIndex), \
747 >                                                                                     cumulativeFlags.at("secondary electrons").at(flagsForPairCutsIndex), \
748 >                                                                                     "electron-secondary electron pairs");
749  
750          else if(currentObject == "electron-electron pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,electrons.product(),electrons.product(), \
751                                                                             cumulativeFlags.at("electrons").at(flagsForPairCutsIndex), \
# Line 607 | Line 755 | OSUAnalysis::analyze (const edm::Event &
755                                                                         cumulativeFlags.at("electrons").at(flagsForPairCutsIndex), \
756                                                                         cumulativeFlags.at("muons").at(flagsForPairCutsIndex), \
757                                                                         "electron-muon pairs");
758 <        else if(currentObject == "track-event pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,tracks.product(),events.product(),
759 <                                                                     cumulativeFlags.at("tracks").at(flagsForPairCutsIndex),
760 <                                                                     cumulativeFlags.at("events").at(flagsForPairCutsIndex),
761 <                                                                     "track-event pairs");
762 <        else if(currentObject == "electron-track pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,electrons.product(),tracks.product(),
763 <                                                                        cumulativeFlags.at("electrons").at(flagsForPairCutsIndex),
764 <                                                                        cumulativeFlags.at("tracks").at(flagsForPairCutsIndex),
765 <                                                                        "electron-track pairs");
766 <        else if(currentObject == "muon-track pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,muons.product(),tracks.product(),
767 <                                                                    cumulativeFlags.at("muons").at(flagsForPairCutsIndex),
768 <                                                                    cumulativeFlags.at("tracks").at(flagsForPairCutsIndex),
769 <                                                                    "muon-track pairs");
770 <        else if(currentObject == "muon-tau pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,muons.product(),taus.product(),
771 <                                                                  cumulativeFlags.at("muons").at(flagsForPairCutsIndex),
772 <                                                                  cumulativeFlags.at("taus").at(flagsForPairCutsIndex),
773 <                                                                  "muon-tau pairs");
774 <        else if(currentObject == "tau-tau pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,taus.product(),taus.product(),
775 <                                                                 cumulativeFlags.at("taus").at(flagsForPairCutsIndex),
776 <                                                                 cumulativeFlags.at("taus").at(flagsForPairCutsIndex),
777 <                                                                 "tau-tau pairs");
778 <        else if(currentObject == "tau-track pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,taus .product(),tracks.product(),
758 >        else if(currentObject == "jet-jet pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,jets.product(),jets.product(), \
759 >                                                                 cumulativeFlags.at("jets").at(flagsForPairCutsIndex), \
760 >                                                                 cumulativeFlags.at("jets").at(flagsForPairCutsIndex), \
761 >                                                                 "jet-jet pairs");
762 >        else if(currentObject == "electron-jet pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,electrons.product(),jets.product(), \
763 >                                                                      cumulativeFlags.at("electrons").at(flagsForPairCutsIndex), \
764 >                                                                      cumulativeFlags.at("jets").at(flagsForPairCutsIndex), \
765 >                                                                      "electron-jet pairs");
766 >        else if(currentObject == "muon-jet pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,muons.product(),jets.product(), \
767 >                                                                  cumulativeFlags.at("muons").at(flagsForPairCutsIndex), \
768 >                                                                  cumulativeFlags.at("jets").at(flagsForPairCutsIndex), \
769 >                                                                  "muon-jet pairs");
770 >        else if(currentObject == "track-event pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,tracks.product(),events.product(),
771 >                                                                     cumulativeFlags.at("tracks").at(flagsForPairCutsIndex),
772 >                                                                     cumulativeFlags.at("events").at(flagsForPairCutsIndex),
773 >                                                                     "track-event pairs");
774 >        else if(currentObject == "electron-track pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,electrons.product(),tracks.product(),
775 >                                                                        cumulativeFlags.at("electrons").at(flagsForPairCutsIndex),
776 >                                                                        cumulativeFlags.at("tracks").at(flagsForPairCutsIndex),
777 >                                                                        "electron-track pairs");
778 >        else if(currentObject == "muon-track pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,muons.product(),tracks.product(),
779 >                                                                    cumulativeFlags.at("muons").at(flagsForPairCutsIndex),
780 >                                                                    cumulativeFlags.at("tracks").at(flagsForPairCutsIndex),
781 >                                                                    "muon-track pairs");
782 >        else if(currentObject == "muon-tau pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,muons.product(),taus.product(),
783 >                                                                  cumulativeFlags.at("muons").at(flagsForPairCutsIndex),
784 >                                                                  cumulativeFlags.at("taus").at(flagsForPairCutsIndex),
785 >                                                                  "muon-tau pairs");
786 >        else if(currentObject == "tau-tau pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,taus.product(),taus.product(),
787                                                                   cumulativeFlags.at("taus").at(flagsForPairCutsIndex),
788 <                                                                 cumulativeFlags.at("tracks").at(flagsForPairCutsIndex),
789 <                                                                 "tau-track pairs");
790 <        
791 <        
788 >                                                                 cumulativeFlags.at("taus").at(flagsForPairCutsIndex),
789 >                                                                 "tau-tau pairs");
790 >        else if(currentObject == "tau-track pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,taus .product(),tracks.product(),
791 >                                                                   cumulativeFlags.at("taus").at(flagsForPairCutsIndex),
792 >                                                                   cumulativeFlags.at("tracks").at(flagsForPairCutsIndex),
793 >                                                                   "tau-track pairs");
794 >        else if(currentObject == "electron-trigobj pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,electrons.product(),trigobjs.product(),
795 >                                                                          cumulativeFlags.at("electrons").at(flagsForPairCutsIndex),
796 >                                                                          cumulativeFlags.at("trigobjs").at(flagsForPairCutsIndex),
797 >                                                                          "electron-trigobj pairs");
798 >        else if(currentObject == "muon-trigobj pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,muons.product(),trigobjs.product(),
799 >                                                                      cumulativeFlags.at("muons").at(flagsForPairCutsIndex),
800 >                                                                      cumulativeFlags.at("trigobjs").at(flagsForPairCutsIndex),
801 >                                                                      "muon-trigobj pairs");
802 >
803 >        if(currentObject == "stops" && datasetType_ == "signalMC") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,stops.product(),"stops");
804        }
805  
806  
807  
808      }//end loop over all cuts
641 –
642 –
809      //use cumulative flags to apply cuts at event level
810  
811      bool eventPassedAllCuts = true;
812 <
812 >    //a vector to store cumulative cut descisions after each cut.
813 >    vector<bool> eventPassedPreviousCuts;
814      //apply trigger (true if none were specified)
815      eventPassedAllCuts = eventPassedAllCuts && triggerDecision;
816  
650 –
817      for(uint currentCutIndex = 0; currentCutIndex != currentChannel.cuts.size(); currentCutIndex++){
818  
819        //loop over all objects and count how many passed the cumulative selection up to this point
# Line 655 | Line 821 | OSUAnalysis::analyze (const edm::Event &
821        int numberPassing = 0;
822  
823        for (uint object = 0; object != cumulativeFlags.at(currentCut.inputCollection).at(currentCutIndex).size() ; object++){
824 <        if(cumulativeFlags.at(currentCut.inputCollection).at(currentCutIndex).at(object)) numberPassing++;
824 >        if(cumulativeFlags.at(currentCut.inputCollection).at(currentCutIndex).at(object)) numberPassing++;
825        }
826        bool cutDecision = evaluateComparison(numberPassing,currentCut.eventComparativeOperator,currentCut.numberRequired);
827        cutFlows_.at(currentChannelIndex)->at (currentCut.name) = cutDecision;
828        eventPassedAllCuts = eventPassedAllCuts && cutDecision;
829 <
829 >      eventPassedPreviousCuts.push_back(eventPassedAllCuts);
830      }
831 +    double scaleFactor = masterScaleFactor;
832  
833 <    //     if(datasetType_ != "data") {
834 <    //       scaleFactor *= muonSFWeight_->at (chosenMuon ()->eta);
835 <    //       scaleFactor *= electronSFWeight_->at (chosenElectron ()->eta, chosenElectron ()->pt);
836 <    //     }
837 <
833 >    muonScaleFactor_ = electronScaleFactor_ = bTagScaleFactor_ = 1.0;
834 >    if(applyLeptonSF_ && datasetType_ != "data"){
835 >      if(cumulativeFlags.find ("muons") != cumulativeFlags.end ()){
836 >        vector<bool> muonFlags;
837 >        for (int i = cumulativeFlags.at("muons").size() - 1; i >= 0; i--){
838 >          if (cumulativeFlags.at("muons").at(i).size()){
839 >            muonFlags = cumulativeFlags.at("muons").at(i);
840 >            break;
841 >          }
842 >        }
843 >        for (uint muonIndex = 0; muonIndex != muonFlags.size(); muonIndex++){
844 >          if(!muonFlags.at(muonIndex)) continue;
845 >          muonScaleFactor_ *= muonSFWeight_->at (muons->at(muonIndex).eta);
846 >        }
847 >      }
848 >      if(cumulativeFlags.find ("electrons") != cumulativeFlags.end ()){
849 >        vector<bool> electronFlags;
850 >        for (int i = cumulativeFlags.at("electrons").size() - 1; i >= 0; i--){
851 >          if (cumulativeFlags.at("electrons").at(i).size()){
852 >            electronFlags = cumulativeFlags.at("electrons").at(i);
853 >            break;
854 >          }
855 >        }
856 >        for (uint electronIndex = 0; electronIndex != electronFlags.size(); electronIndex++){
857 >          if(!electronFlags.at(electronIndex)) continue;
858 >          electronScaleFactor_ *= electronSFWeight_->at (electrons->at(electronIndex).eta, electrons->at(electronIndex).pt);
859 >        }
860 >      }
861 >    }
862 >    if(applyBtagSF_ && datasetType_ != "data"){
863 >     if(cumulativeFlags.find ("jets") != cumulativeFlags.end ()){
864 >        vector<bool> jetFlags;        
865 >        vector<double> jetSFs;
866 >        for (int i = cumulativeFlags.at("jets").size() - 1; i >= 0; i--){
867 >          if (cumulativeFlags.at("jets").at(i).size()){            
868 >            jetFlags = cumulativeFlags.at("jets").at(i);
869 >            break;          
870 >          }
871 >        }        
872 >        for (uint jetIndex = 0; jetIndex != jetFlags.size(); jetIndex++){
873 >          if(!jetFlags.at(jetIndex)) continue;          
874 >          double jetSFTmp = bTagSFWeight_->sflookup(jets->at(jetIndex).btagCombinedSecVertex, jets->at(jetIndex).pt);
875 >          jetSFs.push_back(jetSFTmp);
876 >        }
877 >        bTagScaleFactor_ *= bTagSFWeight_->weight( jetSFs, minBtag_, maxBtag_ );    
878 >      }
879 >    }
880 >    scaleFactor *= muonScaleFactor_;
881 >    scaleFactor *= electronScaleFactor_;
882 >    scaleFactor *= bTagScaleFactor_;
883      cutFlows_.at(currentChannelIndex)->fillCutFlow(scaleFactor);
884  
673 –
674 –
675 –    if(!eventPassedAllCuts)continue;
676 –
885      if (printEventInfo_) {
886 <      // Write information about event to screen, for testing purposes.  
887 <      cout << "Event passed all cuts in channel " <<  currentChannel.name
888 <           << ": run="  << events->at(0).run
889 <           << "  lumi=" << events->at(0).lumi
890 <           << "  event=" << events->at(0).evt
891 <           << endl;  
886 >      // Write information about event to screen, for testing purposes.
887 >      cout << "Event passed all cuts in channel " <<  currentChannel.name
888 >           << ": run="  << events->at(0).run
889 >           << "  lumi=" << events->at(0).lumi
890 >           << "  event=" << events->at(0).evt
891 >           << endl;
892      }
893  
894  
895      //filling histograms
896 <    for (uint histogramIndex = 0; histogramIndex != histograms.size(); histogramIndex++){
897 <      histogram currentHistogram = histograms.at(histogramIndex);
898 <
899 <      if(currentHistogram.inputVariables.size() == 1){
900 <        TH1D* histo;
693 <        histo = oneDHists_.at(currentChannelIndex).at(currentHistogram.name);
694 <
695 <        if(currentHistogram.inputCollection == "jets") fill1DHistogram(histo,currentHistogram,jets.product(),cumulativeFlags.at("jets").back(),scaleFactor);
696 <        else if(currentHistogram.inputCollection == "muons") fill1DHistogram(histo,currentHistogram,muons.product(),cumulativeFlags.at("muons").back(),scaleFactor);
697 <        else if(currentHistogram.inputCollection == "secondary muons") fill1DHistogram(histo,currentHistogram,muons.product(),cumulativeFlags.at("secondary muons").back(),scaleFactor);
698 <        else if(currentHistogram.inputCollection == "muon-muon pairs") fill1DHistogram(histo,currentHistogram,muons.product(),muons.product(), \
699 <                                                                                       cumulativeFlags.at("muons").back(),cumulativeFlags.at("muons").back(), \
700 <                                                                                       cumulativeFlags.at("muon-muon pairs").back(),scaleFactor);
701 <        else if(currentHistogram.inputCollection == "muon-secondary muon pairs") fill1DHistogram(histo,currentHistogram,muons.product(),muons.product(), \
702 <                                                                                       cumulativeFlags.at("muons").back(),cumulativeFlags.at("secondary muons").back(), \
703 <                                                                                       cumulativeFlags.at("muon-secondary muon pairs").back(),scaleFactor);
704 <        else if(currentHistogram.inputCollection == "electrons") fill1DHistogram(histo,currentHistogram,electrons.product(),cumulativeFlags.at("electrons").back(),scaleFactor);
705 <        else if(currentHistogram.inputCollection == "electron-electron pairs") fill1DHistogram(histo,currentHistogram,electrons.product(),electrons.product(),\
706 <                                                                                               cumulativeFlags.at("electrons").back(),cumulativeFlags.at("electrons").back(),\
707 <                                                                                               cumulativeFlags.at("electron-electron pairs").back(),scaleFactor);
708 <        else if(currentHistogram.inputCollection == "electron-muon pairs") fill1DHistogram(histo,currentHistogram, electrons.product(),muons.product(), \
709 <                                                                                           cumulativeFlags.at("electrons").back(),cumulativeFlags.at("muons").back(),
710 <                                                                                           cumulativeFlags.at("electron-muon pairs").back(),scaleFactor);
711 <        else if(currentHistogram.inputCollection == "electron-track pairs") fill1DHistogram(histo,currentHistogram, electrons.product(),tracks.product(),        
712 <                                                                                            cumulativeFlags.at("electrons").back(),cumulativeFlags.at("tracks").back(),  
713 <                                                                                            cumulativeFlags.at("electron-track pairs").back(),scaleFactor);      
714 <        else if(currentHistogram.inputCollection == "muon-track pairs") fill1DHistogram(histo,currentHistogram, muons.product(),tracks.product(),        
715 <                                                                                        cumulativeFlags.at("muons").back(),cumulativeFlags.at("tracks").back(),  
716 <                                                                                        cumulativeFlags.at("muon-track pairs").back(),scaleFactor);      
717 <        else if(currentHistogram.inputCollection == "muon-tau pairs") fill1DHistogram(histo,currentHistogram, muons.product(),taus.product(),    
718 <                                                                                      cumulativeFlags.at("muons").back(),cumulativeFlags.at("taus").back(),      
719 <                                                                                      cumulativeFlags.at("muon-tau pairs").back(),scaleFactor);  
720 <        else if(currentHistogram.inputCollection == "tau-tau pairs") fill1DHistogram(histo,currentHistogram, taus.product(),taus.product(),      
721 <                                                                                     cumulativeFlags.at("taus").back(),cumulativeFlags.at("taus").back(),        
722 <                                                                                     cumulativeFlags.at("tau-tau pairs").back(),scaleFactor);    
723 <        else if(currentHistogram.inputCollection == "tau-track pairs") fill1DHistogram(histo,currentHistogram, taus.product(),tracks.product(),
724 <                                                                                     cumulativeFlags.at("taus").back(),cumulativeFlags.at("tracks").back(),
725 <                                                                                     cumulativeFlags.at("tau-track pairs").back(),scaleFactor);
726 <
727 <        else if(currentHistogram.inputCollection == "events") fill1DHistogram(histo,currentHistogram,events.product(),cumulativeFlags.at("events").back(),scaleFactor);
728 <        else if(currentHistogram.inputCollection == "taus") fill1DHistogram(histo,currentHistogram,taus.product(),cumulativeFlags.at("taus").back(),scaleFactor);
729 <        else if(currentHistogram.inputCollection == "mets") fill1DHistogram(histo,currentHistogram,mets.product(),cumulativeFlags.at("mets").back(),scaleFactor);
730 <        else if(currentHistogram.inputCollection == "tracks") fill1DHistogram(histo,currentHistogram,tracks.product(),cumulativeFlags.at("tracks").back(),scaleFactor);
731 <        else if(currentHistogram.inputCollection == "genjets") fill1DHistogram(histo,currentHistogram,genjets.product(),cumulativeFlags.at("genjets").back(),scaleFactor);
732 <        else if(currentHistogram.inputCollection == "mcparticles") fill1DHistogram(histo,currentHistogram,mcparticles.product(),cumulativeFlags.at("mcparticles").back(),scaleFactor);
733 <        else if(currentHistogram.inputCollection == "primaryvertexs") fill1DHistogram(histo,currentHistogram,primaryvertexs.product(),cumulativeFlags.at("primaryvertexs").back(),scaleFactor);
734 <        else if(currentHistogram.inputCollection == "bxlumis") fill1DHistogram(histo,currentHistogram,bxlumis.product(),cumulativeFlags.at("bxlumis").back(),scaleFactor);
735 <        else if(currentHistogram.inputCollection == "photons") fill1DHistogram(histo,currentHistogram,photons.product(),cumulativeFlags.at("photons").back(),scaleFactor);
736 <        else if(currentHistogram.inputCollection == "superclusters") fill1DHistogram(histo,currentHistogram,superclusters.product(),cumulativeFlags.at("superclusters").back(),scaleFactor);
737 <      }
738 <      else if(currentHistogram.inputVariables.size() == 2){
739 <        TH2D* histo;
740 <        histo = twoDHists_.at(currentChannelIndex).at(currentHistogram.name);
741 <
742 <        if(currentHistogram.inputCollection == "jets") fill2DHistogram(histo,currentHistogram,jets.product(),cumulativeFlags.at("jets").back(),scaleFactor);
743 <        else if(currentHistogram.inputCollection == "muons") fill2DHistogram(histo,currentHistogram,muons.product(),cumulativeFlags.at("muons").back(),scaleFactor);
744 <        else if(currentHistogram.inputCollection == "secondary muons") fill2DHistogram(histo,currentHistogram,muons.product(),cumulativeFlags.at("secondary muons").back(),scaleFactor);
745 <        else if(currentHistogram.inputCollection == "muon-muon pairs") fill2DHistogram(histo,currentHistogram,muons.product(),muons.product(), \
746 <                                                                                       cumulativeFlags.at("muons").back(),cumulativeFlags.at("muons").back(), \
747 <                                                                                       cumulativeFlags.at("muon-muon pairs").back(),scaleFactor);
748 <        else if(currentHistogram.inputCollection == "muon-muon pairs") fill2DHistogram(histo,currentHistogram,muons.product(),muons.product(), \
749 <                                                                                       cumulativeFlags.at("muons").back(),cumulativeFlags.at("secondary muons").back(), \
750 <                                                                                       cumulativeFlags.at("muon-secondary muon pairs").back(),scaleFactor);
751 <        else if(currentHistogram.inputCollection == "electrons") fill2DHistogram(histo,currentHistogram,electrons.product(),cumulativeFlags.at("electrons").back(),scaleFactor);
752 <        else if(currentHistogram.inputCollection == "electron-electron pairs") fill2DHistogram(histo,currentHistogram,electrons.product(),electrons.product(), \
753 <                                                                                               cumulativeFlags.at("electrons").back(),cumulativeFlags.at("electrons").back(), \
754 <                                                                                               cumulativeFlags.at("electron-electron pairs").back(),scaleFactor);
755 <        else if(currentHistogram.inputCollection == "electron-muon pairs") fill2DHistogram(histo,currentHistogram,electrons.product(),muons.product(), \
756 <                                                                                           cumulativeFlags.at("electrons").back(),cumulativeFlags.at("muons").back(), \
757 <                                                                                           cumulativeFlags.at("electron-muon pairs").back(),scaleFactor);
758 <        else if(currentHistogram.inputCollection == "electron-track pairs") fill2DHistogram(histo,currentHistogram,electrons.product(),tracks.product(),        
759 <                                                                                            cumulativeFlags.at("electrons").back(),cumulativeFlags.at("tracks").back(),          
760 <                                                                                            cumulativeFlags.at("electron-track pairs").back(),scaleFactor);      
761 <        else if(currentHistogram.inputCollection == "muon-track pairs") fill2DHistogram(histo,currentHistogram,muons.product(),tracks.product(),        
762 <                                                                                        cumulativeFlags.at("muons").back(),cumulativeFlags.at("tracks").back(),          
763 <                                                                                        cumulativeFlags.at("muon-track pairs").back(),scaleFactor);      
764 <        else if(currentHistogram.inputCollection == "muon-tau pairs") fill2DHistogram(histo,currentHistogram,muons.product(),taus.product(),    
765 <                                                                                      cumulativeFlags.at("muons").back(),cumulativeFlags.at("taus").back(),      
766 <                                                                                      cumulativeFlags.at("muon-tau pairs").back(),scaleFactor);  
767 <        else if(currentHistogram.inputCollection == "tau-tau pairs") fill2DHistogram(histo,currentHistogram,taus.product(),taus.product(),      
768 <                                                                                     cumulativeFlags.at("taus").back(),cumulativeFlags.at("taus").back(),        
769 <                                                                                     cumulativeFlags.at("tau-tau pairs").back(),scaleFactor);    
770 <        else if(currentHistogram.inputCollection == "tau-track pairs") fill2DHistogram(histo,currentHistogram,taus.product(),tracks.product(),
771 <                                                                                     cumulativeFlags.at("taus").back(),cumulativeFlags.at("tracks").back(),
772 <                                                                                     cumulativeFlags.at("tau-track pairs").back(),scaleFactor);
773 <        else if(currentHistogram.inputCollection == "events") fill2DHistogram(histo,currentHistogram,events.product(),cumulativeFlags.at("events").back(),scaleFactor);
774 <        else if(currentHistogram.inputCollection == "taus") fill2DHistogram(histo,currentHistogram,taus.product(),cumulativeFlags.at("taus").back(),scaleFactor);
775 <        else if(currentHistogram.inputCollection == "mets") fill2DHistogram(histo,currentHistogram,mets.product(),cumulativeFlags.at("mets").back(),scaleFactor);
776 <        else if(currentHistogram.inputCollection == "tracks") fill2DHistogram(histo,currentHistogram,tracks.product(),cumulativeFlags.at("tracks").back(),scaleFactor);
777 <        else if(currentHistogram.inputCollection == "track-event pairs") fill2DHistogram(histo,currentHistogram,tracks.product(),events.product(),
778 <                                                                                         cumulativeFlags.at("tracks").back(),cumulativeFlags.at("events").back(),
779 <                                                                                         cumulativeFlags.at("track-event pairs").back(),scaleFactor);  
780 <        else if(currentHistogram.inputCollection == "genjets") fill2DHistogram(histo,currentHistogram,genjets.product(),cumulativeFlags.at("genjets").back(),scaleFactor);
781 <        else if(currentHistogram.inputCollection == "mcparticles") fill2DHistogram(histo,currentHistogram,mcparticles.product(),cumulativeFlags.at("mcparticles").back(),scaleFactor);
782 <        else if(currentHistogram.inputCollection == "primaryvertexs") fill2DHistogram(histo,currentHistogram,primaryvertexs.product(),cumulativeFlags.at("primaryvertexs").back(),scaleFactor);
783 <        else if(currentHistogram.inputCollection == "bxlumis") fill2DHistogram(histo,currentHistogram,bxlumis.product(),cumulativeFlags.at("bxlumis").back(),scaleFactor);
784 <        else if(currentHistogram.inputCollection == "photons") fill2DHistogram(histo,currentHistogram,photons.product(),cumulativeFlags.at("photons").back(),scaleFactor);
785 <        else if(currentHistogram.inputCollection == "superclusters") fill2DHistogram(histo,currentHistogram,superclusters.product(),cumulativeFlags.at("superclusters").back(),scaleFactor);
896 >    for(uint currentCut = 0; currentCut != oneDHists_.at(currentChannelIndex).size(); currentCut++){//loop over all the directories in each channel.
897 >      uint currentDir;
898 >      if (!GetPlotsAfterEachCut_) { currentDir =  currentChannel.cuts.size() - oneDHists_.at(currentChannelIndex).size(); } //if GetPlotsAfterEachCut_ is false, set currentDir point to the last cut.
899 >      else{
900 >        currentDir = currentCut;
901        }
902 <    }
902 >      if(eventPassedPreviousCuts.at(currentDir)){
903  
904 +        // Assign BNTree variables
905 +        for (uint iBranch = 0; iBranch != treeBranches_.size(); iBranch++) {
906 +          BranchSpecs brSpecs = treeBranches_.at(iBranch);  
907 +          string coll = brSpecs.inputCollection;  
908 +          if (cumulativeFlags.count(coll) == 0) cout << "Error: no flags found for collection:  " << coll << ", will cause a seg fault" << endl;
909 +
910 +          if     (coll == "jets")                assignTreeBranch(brSpecs,jets.product(),          cumulativeFlags.at(coll).at(currentDir));            
911 +          else if(coll == "secondary jets")      assignTreeBranch(brSpecs,jets.product(),          cumulativeFlags.at(coll).at(currentDir));
912 +          else if(coll == "muons")               assignTreeBranch(brSpecs,muons.product(),         cumulativeFlags.at(coll).at(currentDir));        
913 +          else if(coll == "secondary muons")     assignTreeBranch(brSpecs,muons.product(),         cumulativeFlags.at(coll).at(currentDir));
914 +          else if(coll == "electrons")           assignTreeBranch(brSpecs,electrons.product(),     cumulativeFlags.at(coll).at(currentDir));
915 +          else if(coll == "secondary electrons") assignTreeBranch(brSpecs,electrons.product(),     cumulativeFlags.at(coll).at(currentDir));
916 +          else if(coll == "events")              assignTreeBranch(brSpecs,events.product(),        cumulativeFlags.at(coll).at(currentDir));
917 +          else if(coll == "taus")                assignTreeBranch(brSpecs,taus.product(),          cumulativeFlags.at(coll).at(currentDir));
918 +          else if(coll == "mets")                assignTreeBranch(brSpecs,mets.product(),          cumulativeFlags.at(coll).at(currentDir));
919 +          else if(coll == "tracks")              assignTreeBranch(brSpecs,tracks.product(),        cumulativeFlags.at(coll).at(currentDir));
920 +          else if(coll == "genjets")             assignTreeBranch(brSpecs,genjets.product(),       cumulativeFlags.at(coll).at(currentDir));
921 +          else if(coll == "mcparticles")         assignTreeBranch(brSpecs,mcparticles.product(),   cumulativeFlags.at(coll).at(currentDir));
922 +          else if(coll == "primaryvertexs")      assignTreeBranch(brSpecs,primaryvertexs.product(),cumulativeFlags.at(coll).at(currentDir));
923 +          else if(coll == "bxlumis")             assignTreeBranch(brSpecs,bxlumis.product(),       cumulativeFlags.at(coll).at(currentDir));
924 +          else if(coll == "photons")             assignTreeBranch(brSpecs,photons.product(),       cumulativeFlags.at(coll).at(currentDir));
925 +          else if(coll == "superclusters")       assignTreeBranch(brSpecs,superclusters.product(), cumulativeFlags.at(coll).at(currentDir));
926 +          else if(coll == "trigobjs")            assignTreeBranch(brSpecs,trigobjs.product(),      cumulativeFlags.at(coll).at(currentDir));
927 +          else if(coll == "stops"
928 +                  && datasetType_ == "signalMC") assignTreeBranch(brSpecs,stops.product(),         cumulativeFlags.at(coll).at(currentDir));
929 +        } // end loop over branches  
930 +                                                                                          
931 +        for (uint histogramIndex = 0; histogramIndex != histograms.size(); histogramIndex++){
932 +          histogram currentHistogram = histograms.at(histogramIndex);
933 +
934 +          if (cumulativeFlags.count(currentHistogram.inputCollection) == 0) cout << "Error: no flags found for collection:  " << currentHistogram.inputCollection << ", will cause a seg fault" << endl;
935 +
936 +          if(currentHistogram.inputVariables.size() == 1){
937 +            TH1D* histo;  
938 +            histo = oneDHists_.at(currentChannelIndex).at(currentCut).at(currentHistogram.name);
939 +            if     (currentHistogram.inputCollection == "jets")            fill1DHistogram(histo,currentHistogram,jets.product(),cumulativeFlags.at("jets").at(currentDir),scaleFactor);
940 +            else if(currentHistogram.inputCollection == "secondary jets")  fill1DHistogram(histo,currentHistogram,jets.product(),cumulativeFlags.at("secondary jets").at(currentDir),scaleFactor);
941 +            else if(currentHistogram.inputCollection == "muons")           fill1DHistogram(histo,currentHistogram,muons.product(),cumulativeFlags.at("muons").at(currentDir),scaleFactor);
942 +            else if(currentHistogram.inputCollection == "secondary muons") fill1DHistogram(histo,currentHistogram,muons.product(),cumulativeFlags.at("secondary muons").at(currentDir),scaleFactor);
943 +            else if(currentHistogram.inputCollection == "secondary electrons") fill1DHistogram(histo,currentHistogram,electrons.product(),cumulativeFlags.at("secondary electrons").at(currentDir),scaleFactor);
944 +            else if(currentHistogram.inputCollection == "muon-muon pairs") fill1DHistogram(histo,currentHistogram,muons.product(),muons.product(), \
945 +                                                                                           cumulativeFlags.at("muons").at(currentDir),cumulativeFlags.at("muons").at(currentDir), \
946 +                                                                                           cumulativeFlags.at("muon-muon pairs").at(currentDir),scaleFactor);
947 +            else if(currentHistogram.inputCollection == "muon-secondary muon pairs") fill1DHistogram(histo,currentHistogram,muons.product(),muons.product(), \
948 +                                                                                                     cumulativeFlags.at("muons").at(currentDir),cumulativeFlags.at("secondary muons").at(currentDir), \
949 +                                                                                                     cumulativeFlags.at("muon-secondary muon pairs").at(currentDir),scaleFactor);
950 +            else if(currentHistogram.inputCollection == "electrons") fill1DHistogram(histo,currentHistogram,electrons.product(),cumulativeFlags.at("electrons").at(currentDir),scaleFactor);
951 +            else if(currentHistogram.inputCollection == "electron-electron pairs") fill1DHistogram(histo,currentHistogram,electrons.product(),electrons.product(),\
952 +                                                                                                   cumulativeFlags.at("electrons").at(currentDir),cumulativeFlags.at("electrons").at(currentDir),\
953 +                                                                                                   cumulativeFlags.at("electron-electron pairs").at(currentDir),scaleFactor);
954 +            else if(currentHistogram.inputCollection == "jet-jet pairs") fill1DHistogram(histo,currentHistogram,jets.product(),jets.product(),\
955 +                                                                                         cumulativeFlags.at("jets").at(currentDir),cumulativeFlags.at("jets").at(currentDir),\
956 +                                                                                         cumulativeFlags.at("jet-jet pairs").at(currentDir),scaleFactor);
957 +            else if(currentHistogram.inputCollection == "electron-secondary electron pairs") fill1DHistogram(histo,currentHistogram,electrons.product(),electrons.product(), \
958 +                                                                                                             cumulativeFlags.at("electrons").at(currentDir),cumulativeFlags.at("secondary electrons").at(currentDir), \
959 +                                                                                                             cumulativeFlags.at("electron-secondary electron pairs").at(currentDir),scaleFactor);
960 +            else if(currentHistogram.inputCollection == "electron-muon pairs") fill1DHistogram(histo,currentHistogram, electrons.product(),muons.product(), \
961 +                                                                                               cumulativeFlags.at("electrons").at(currentDir),cumulativeFlags.at("muons").at(currentDir),
962 +                                                                                               cumulativeFlags.at("electron-muon pairs").at(currentDir),scaleFactor);
963 +            else if(currentHistogram.inputCollection == "electron-jet pairs") fill1DHistogram(histo,currentHistogram, electrons.product(),jets.product(), \
964 +                                                                                              cumulativeFlags.at("electrons").at(currentDir),cumulativeFlags.at("jets").at(currentDir),
965 +                                                                                              cumulativeFlags.at("electron-jet pairs").at(currentDir),scaleFactor);
966 +            else if(currentHistogram.inputCollection == "muon-jet pairs") fill1DHistogram(histo,currentHistogram, muons.product(),jets.product(), \
967 +                                                                                          cumulativeFlags.at("muons").at(currentDir),cumulativeFlags.at("jets").at(currentDir),
968 +                                                                                          cumulativeFlags.at("muon-jet pairs").at(currentDir),scaleFactor);
969 +            else if(currentHistogram.inputCollection == "electron-track pairs") fill1DHistogram(histo,currentHistogram, electrons.product(),tracks.product(),
970 +                                                                                                cumulativeFlags.at("electrons").at(currentDir),cumulativeFlags.at("tracks").at(currentDir),
971 +                                                                                                cumulativeFlags.at("electron-track pairs").at(currentDir),scaleFactor);
972 +            else if(currentHistogram.inputCollection == "muon-track pairs") fill1DHistogram(histo,currentHistogram, muons.product(),tracks.product(),
973 +                                                                                            cumulativeFlags.at("muons").at(currentDir),cumulativeFlags.at("tracks").at(currentDir),
974 +                                                                                            cumulativeFlags.at("muon-track pairs").at(currentDir),scaleFactor);
975 +            else if(currentHistogram.inputCollection == "muon-tau pairs") fill1DHistogram(histo,currentHistogram, muons.product(),taus.product(),
976 +                                                                                          cumulativeFlags.at("muons").at(currentDir),cumulativeFlags.at("taus").at(currentDir),
977 +                                                                                          cumulativeFlags.at("muon-tau pairs").at(currentDir),scaleFactor);
978 +            else if(currentHistogram.inputCollection == "tau-tau pairs") fill1DHistogram(histo,currentHistogram, taus.product(),taus.product(),
979 +                                                                                         cumulativeFlags.at("taus").at(currentDir),cumulativeFlags.at("taus").at(currentDir),
980 +                                                                                         cumulativeFlags.at("tau-tau pairs").at(currentDir),scaleFactor);
981 +            else if(currentHistogram.inputCollection == "tau-track pairs") fill1DHistogram(histo,currentHistogram, taus.product(),tracks.product(),
982 +                                                                                           cumulativeFlags.at("taus").at(currentDir),cumulativeFlags.at("tracks").at(currentDir),
983 +                                                                                           cumulativeFlags.at("tau-track pairs").at(currentDir),scaleFactor);
984 +            else if(currentHistogram.inputCollection == "electron-trigobj pairs") fill1DHistogram(histo,currentHistogram, electrons.product(),trigobjs.product(),
985 +                                                                                                  cumulativeFlags.at("electrons").at(currentDir),cumulativeFlags.at("trigobjs").at(currentDir),
986 +                                                                                                  cumulativeFlags.at("electron-trigobj pairs").at(currentDir),scaleFactor);
987 +            else if(currentHistogram.inputCollection == "muon-trigobj pairs") fill1DHistogram(histo,currentHistogram, muons.product(),trigobjs.product(),
988 +                                                                                              cumulativeFlags.at("muons").at(currentDir),cumulativeFlags.at("trigobjs").at(currentDir),
989 +                                                                                              cumulativeFlags.at("muon-trigobj pairs").at(currentDir),scaleFactor);
990 +
991 +            else if(currentHistogram.inputCollection == "events") fill1DHistogram(histo,currentHistogram,events.product(),cumulativeFlags.at("events").at(currentDir),scaleFactor);
992 +            else if(currentHistogram.inputCollection == "taus") fill1DHistogram(histo,currentHistogram,taus.product(),cumulativeFlags.at("taus").at(currentDir),scaleFactor);
993 +            else if(currentHistogram.inputCollection == "mets") fill1DHistogram(histo,currentHistogram,mets.product(),cumulativeFlags.at("mets").at(currentDir),scaleFactor);
994 +            else if(currentHistogram.inputCollection == "tracks") fill1DHistogram(histo,currentHistogram,tracks.product(),cumulativeFlags.at("tracks").at(currentDir),scaleFactor);
995 +            else if(currentHistogram.inputCollection == "genjets") fill1DHistogram(histo,currentHistogram,genjets.product(),cumulativeFlags.at("genjets").at(currentDir),scaleFactor);
996 +            else if(currentHistogram.inputCollection == "mcparticles") fill1DHistogram(histo,currentHistogram,mcparticles.product(),cumulativeFlags.at("mcparticles").at(currentDir),scaleFactor);
997 +            else if(currentHistogram.inputCollection == "primaryvertexs") fill1DHistogram(histo,currentHistogram,primaryvertexs.product(),cumulativeFlags.at("primaryvertexs").at(currentDir),scaleFactor);
998 +            else if(currentHistogram.inputCollection == "bxlumis") fill1DHistogram(histo,currentHistogram,bxlumis.product(),cumulativeFlags.at("bxlumis").at(currentDir),scaleFactor);
999 +            else if(currentHistogram.inputCollection == "photons") fill1DHistogram(histo,currentHistogram,photons.product(),cumulativeFlags.at("photons").at(currentDir),scaleFactor);
1000 +            else if(currentHistogram.inputCollection == "superclusters") fill1DHistogram(histo,currentHistogram,superclusters.product(),cumulativeFlags.at("superclusters").at(currentDir),scaleFactor);
1001 +            else if(currentHistogram.inputCollection == "trigobjs") fill1DHistogram(histo,currentHistogram,trigobjs.product(),cumulativeFlags.at("trigobjs").at(currentDir),scaleFactor);
1002 +            else if(currentHistogram.inputCollection == "stops" && datasetType_ == "signalMC") fill1DHistogram(histo,currentHistogram,stops.product(),cumulativeFlags.at("stops").at(currentDir),scaleFactor);
1003 +          }
1004 +          else if(currentHistogram.inputVariables.size() == 2){
1005 +            TH2D* histo;
1006 +            histo = twoDHists_.at(currentChannelIndex).at(currentCut).at(currentHistogram.name);
1007 +            if     (currentHistogram.inputCollection == "jets")            fill2DHistogram(histo,currentHistogram,jets.product(),cumulativeFlags.at("jets").at(currentDir),scaleFactor);
1008 +            else if(currentHistogram.inputCollection == "secondary jets")  fill2DHistogram(histo,currentHistogram,jets.product(),cumulativeFlags.at("secondary jets").at(currentDir),scaleFactor);
1009 +            else if(currentHistogram.inputCollection == "muons")           fill2DHistogram(histo,currentHistogram,muons.product(),cumulativeFlags.at("muons").at(currentDir),scaleFactor);
1010 +            else if(currentHistogram.inputCollection == "secondary muons") fill2DHistogram(histo,currentHistogram,muons.product(),cumulativeFlags.at("secondary muons").at(currentDir),scaleFactor);
1011 +            else if(currentHistogram.inputCollection == "muon-muon pairs") fill2DHistogram(histo,currentHistogram,muons.product(),muons.product(), \
1012 +                                                                                           cumulativeFlags.at("muons").at(currentDir),cumulativeFlags.at("muons").at(currentDir), \
1013 +                                                                                           cumulativeFlags.at("muon-muon pairs").at(currentDir),scaleFactor);
1014 +            else if(currentHistogram.inputCollection == "muon-secondary muon pairs") fill2DHistogram(histo,currentHistogram,muons.product(),muons.product(), \
1015 +                                                                                                     cumulativeFlags.at("muons").at(currentDir),cumulativeFlags.at("secondary muons").at(currentDir), \
1016 +                                                                                                     cumulativeFlags.at("muon-secondary muon pairs").at(currentDir),scaleFactor);
1017 +            else if(currentHistogram.inputCollection == "electrons") fill2DHistogram(histo,currentHistogram,electrons.product(),cumulativeFlags.at("electrons").at(currentDir),scaleFactor);
1018 +            else if(currentHistogram.inputCollection == "secondary electrons") fill2DHistogram(histo,currentHistogram,electrons.product(),cumulativeFlags.at("secondary electrons").at(currentDir),scaleFactor);
1019 +            else if(currentHistogram.inputCollection == "electron-electron pairs") fill2DHistogram(histo,currentHistogram,electrons.product(),electrons.product(), \
1020 +                                                                                                   cumulativeFlags.at("electrons").at(currentDir),cumulativeFlags.at("electrons").at(currentDir), \
1021 +                                                                                                   cumulativeFlags.at("electron-electron pairs").at(currentDir),scaleFactor);
1022 +            else if(currentHistogram.inputCollection == "jet-jet pairs") fill2DHistogram(histo,currentHistogram,jets.product(),jets.product(), \
1023 +                                                                                         cumulativeFlags.at("jets").at(currentDir),cumulativeFlags.at("jets").at(currentDir), \
1024 +                                                                                         cumulativeFlags.at("jet-jet pairs").at(currentDir),scaleFactor);
1025 +            else if(currentHistogram.inputCollection == "electron-secondary electron pairs") fill2DHistogram(histo,currentHistogram,electrons.product(),electrons.product(), \
1026 +                                                                                                             cumulativeFlags.at("electrons").at(currentDir),cumulativeFlags.at("secondary electrons").at(currentDir), \
1027 +                                                                                                             cumulativeFlags.at("electron-secondary electron pairs").at(currentDir),scaleFactor);
1028 +            else if(currentHistogram.inputCollection == "electron-muon pairs") fill2DHistogram(histo,currentHistogram,electrons.product(),muons.product(), \
1029 +                                                                                               cumulativeFlags.at("electrons").at(currentDir),cumulativeFlags.at("muons").at(currentDir), \
1030 +                                                                                               cumulativeFlags.at("electron-muon pairs").at(currentDir),scaleFactor);
1031 +            else if(currentHistogram.inputCollection == "electron-jet pairs") fill2DHistogram(histo,currentHistogram,electrons.product(),jets.product(), \
1032 +                                                                                              cumulativeFlags.at("electrons").at(currentDir),cumulativeFlags.at("jets").at(currentDir), \
1033 +                                                                                              cumulativeFlags.at("electron-jet pairs").at(currentDir),scaleFactor);
1034 +            else if(currentHistogram.inputCollection == "muon-jet pairs") fill2DHistogram(histo,currentHistogram,muons.product(),jets.product(), \
1035 +                                                                                          cumulativeFlags.at("muons").at(currentDir),cumulativeFlags.at("jets").at(currentDir), \
1036 +                                                                                          cumulativeFlags.at("muon-jet pairs").at(currentDir),scaleFactor);
1037 +            else if(currentHistogram.inputCollection == "electron-track pairs") fill2DHistogram(histo,currentHistogram,electrons.product(),tracks.product(),
1038 +                                                                                                cumulativeFlags.at("electrons").at(currentDir),cumulativeFlags.at("tracks").at(currentDir),
1039 +                                                                                                cumulativeFlags.at("electron-track pairs").at(currentDir),scaleFactor);
1040 +            else if(currentHistogram.inputCollection == "muon-track pairs") fill2DHistogram(histo,currentHistogram,muons.product(),tracks.product(),
1041 +                                                                                            cumulativeFlags.at("muons").at(currentDir),cumulativeFlags.at("tracks").at(currentDir),
1042 +                                                                                            cumulativeFlags.at("muon-track pairs").at(currentDir),scaleFactor);
1043 +            else if(currentHistogram.inputCollection == "muon-tau pairs") fill2DHistogram(histo,currentHistogram,muons.product(),taus.product(),
1044 +                                                                                          cumulativeFlags.at("muons").at(currentDir),cumulativeFlags.at("taus").at(currentDir),
1045 +                                                                                          cumulativeFlags.at("muon-tau pairs").at(currentDir),scaleFactor);
1046 +            else if(currentHistogram.inputCollection == "tau-tau pairs") fill2DHistogram(histo,currentHistogram,taus.product(),taus.product(),
1047 +                                                                                         cumulativeFlags.at("taus").at(currentDir),cumulativeFlags.at("taus").at(currentDir),
1048 +                                                                                         cumulativeFlags.at("tau-tau pairs").at(currentDir),scaleFactor);
1049 +            else if(currentHistogram.inputCollection == "tau-track pairs") fill2DHistogram(histo,currentHistogram,taus.product(),tracks.product(),
1050 +                                                                                           cumulativeFlags.at("taus").at(currentDir),cumulativeFlags.at("tracks").at(currentDir),
1051 +                                                                                           cumulativeFlags.at("tau-track pairs").at(currentDir),scaleFactor);
1052 +            else if(currentHistogram.inputCollection == "electron-trigobj pairs") fill2DHistogram(histo,currentHistogram,electrons.product(),trigobjs.product(),
1053 +                                                                                                  cumulativeFlags.at("electrons").at(currentDir),cumulativeFlags.at("trigobjs").at(currentDir),
1054 +                                                                                                  cumulativeFlags.at("electron-trigobj pairs").at(currentDir),scaleFactor);
1055 +            else if(currentHistogram.inputCollection == "muon-trigobj pairs") fill2DHistogram(histo,currentHistogram,muons.product(),trigobjs.product(),
1056 +                                                                                              cumulativeFlags.at("muons").at(currentDir),cumulativeFlags.at("trigobjs").at(currentDir),
1057 +                                                                                              cumulativeFlags.at("muon-trigobj pairs").at(currentDir),scaleFactor);
1058 +            else if(currentHistogram.inputCollection == "events") fill2DHistogram(histo,currentHistogram,events.product(),cumulativeFlags.at("events").at(currentDir),scaleFactor);
1059 +            else if(currentHistogram.inputCollection == "taus") fill2DHistogram(histo,currentHistogram,taus.product(),cumulativeFlags.at("taus").at(currentDir),scaleFactor);
1060 +            else if(currentHistogram.inputCollection == "mets") fill2DHistogram(histo,currentHistogram,mets.product(),cumulativeFlags.at("mets").at(currentDir),scaleFactor);
1061 +            else if(currentHistogram.inputCollection == "tracks") fill2DHistogram(histo,currentHistogram,tracks.product(),cumulativeFlags.at("tracks").at(currentDir),scaleFactor);
1062 +            else if(currentHistogram.inputCollection == "track-event pairs") fill2DHistogram(histo,currentHistogram,tracks.product(),events.product(),
1063 +                                                                                             cumulativeFlags.at("tracks").at(currentDir),cumulativeFlags.at("events").at(currentDir),
1064 +                                                                                             cumulativeFlags.at("track-event pairs").at(currentDir),scaleFactor);
1065 +            else if(currentHistogram.inputCollection == "genjets") fill2DHistogram(histo,currentHistogram,genjets.product(),cumulativeFlags.at("genjets").at(currentDir),scaleFactor);
1066 +            else if(currentHistogram.inputCollection == "mcparticles") fill2DHistogram(histo,currentHistogram,mcparticles.product(),cumulativeFlags.at("mcparticles").at(currentDir),scaleFactor);
1067 +            else if(currentHistogram.inputCollection == "primaryvertexs") fill2DHistogram(histo,currentHistogram,primaryvertexs.product(),cumulativeFlags.at("primaryvertexs").at(currentDir),scaleFactor);
1068 +            else if(currentHistogram.inputCollection == "bxlumis") fill2DHistogram(histo,currentHistogram,bxlumis.product(),cumulativeFlags.at("bxlumis").at(currentDir),scaleFactor);
1069 +            else if(currentHistogram.inputCollection == "photons") fill2DHistogram(histo,currentHistogram,photons.product(),cumulativeFlags.at("photons").at(currentDir),scaleFactor);
1070 +            else if(currentHistogram.inputCollection == "superclusters") fill2DHistogram(histo,currentHistogram,superclusters.product(),cumulativeFlags.at("superclusters").at(currentDir),scaleFactor);
1071 +            else if(currentHistogram.inputCollection == "trigobjs") fill2DHistogram(histo,currentHistogram,trigobjs.product(),cumulativeFlags.at("trigobjs").at(currentDir),scaleFactor);
1072 +            else if(currentHistogram.inputCollection == "stops" && datasetType_ == "signalMC") fill2DHistogram(histo,currentHistogram,stops.product(),cumulativeFlags.at("stops").at(currentDir),scaleFactor);
1073 +          }
1074 +          
1075 +        }
1076  
1077  
1078 <    //fills histograms with the sizes of collections
1079 <    for (uint currentObjectIndex = 0; currentObjectIndex != objectsToPlot.size(); currentObjectIndex++){
1080 <
1081 <      string currentObject = objectsToPlot.at(currentObjectIndex);
1082 <
1083 <      string objectToPlot = "";  
1084 <
1085 <      // Name of objectToPlot here must match the name specified in OSUAnalysis::OSUAnalysis().  
1086 <      if(currentObject == "muon-muon pairs") objectToPlot = "dimuonPairs";
1087 <      else if(currentObject == "electron-electron pairs") objectToPlot = "dielectronPairs";
1088 <      else if(currentObject == "electron-muon pairs")     objectToPlot = "electronMuonPairs";
1089 <      else if(currentObject == "electron-track pairs")    objectToPlot = "electronTrackPairs";
1090 <      else if(currentObject == "muon-track pairs")        objectToPlot = "muonTrackPairs";      
1091 <      else if(currentObject == "muon-tau pairs")          objectToPlot = "muonTauPairs";        
1092 <      else if(currentObject == "tau-tau pairs")           objectToPlot = "ditauPairs";
1093 <      else if(currentObject == "tau-track pairs")         objectToPlot = "tauTrackPairs";
1094 <      else if(currentObject == "track-event pairs")       objectToPlot = "trackEventPairs";  
1095 <      else if(currentObject == "muon-secondary muon pairs")       objectToPlot = "muonSecondaryMuonPairs";  
1096 <      else if(currentObject == "secondary muons")         objectToPlot = "secondaryMuons";  
1097 <      else objectToPlot = currentObject;
1098 <
1099 <      string tempCurrentObject = objectToPlot;
1100 <      tempCurrentObject.at(0) = toupper(tempCurrentObject.at(0));  
1101 <      string histoName = "num" + tempCurrentObject;
1102 <
1103 <      //set position of primary vertex in event, in order to calculate quantities relative to it
1104 <      if(std::find(objectsToCut.begin(), objectsToCut.end(), currentObject) != objectsToCut.end()) {
1105 <        vector<bool> lastCutFlags = cumulativeFlags.at(currentObject).back();
1106 <        int numToPlot = 0;
1107 <        for (uint currentFlag = 0; currentFlag != lastCutFlags.size(); currentFlag++){
1108 <          if(lastCutFlags.at(currentFlag)) numToPlot++;
1109 <        }
1110 <        if(objectToPlot == "primaryvertexs"){
1111 <          oneDHists_.at(currentChannelIndex).at(histoName+"BeforePileupCorrection")->Fill(primaryvertexs->size());
1112 <          oneDHists_.at(currentChannelIndex).at(histoName+"AfterPileupCorrection")->Fill(primaryvertexs->size(),scaleFactor);
1113 <        }
1114 <        else {
1115 <          oneDHists_.at(currentChannelIndex).at(histoName)->Fill(numToPlot,scaleFactor);
1116 <        }
1117 <      }
1118 <      else if(objectToPlot == "jets") oneDHists_.at(currentChannelIndex).at(histoName)->Fill(jets->size(),scaleFactor);
1119 <      else if(objectToPlot == "muons") oneDHists_.at(currentChannelIndex).at(histoName)->Fill(muons->size(),scaleFactor);
1120 <      else if(objectToPlot == "secondaryMuons") oneDHists_.at(currentChannelIndex).at(histoName)->Fill(muons->size(),scaleFactor);
1121 <      else if(objectToPlot == "dimuonPairs") oneDHists_.at(currentChannelIndex).at(histoName)->Fill(muons->size()*(muons->size()-1)/2,scaleFactor);
1122 <      else if(objectToPlot == "muonSecondaryMuonPairs") oneDHists_.at(currentChannelIndex).at(histoName)->Fill(muons->size()*(muons->size()-1)/2,scaleFactor);
1123 <      else if(objectToPlot == "electrons") oneDHists_.at(currentChannelIndex).at(histoName)->Fill(electrons->size(),scaleFactor);
1124 <      else if(objectToPlot == "dielectronPairs") oneDHists_.at(currentChannelIndex).at(histoName)->Fill(electrons->size()*(electrons->size()-1)/2,scaleFactor);
1125 <      else if(objectToPlot == "electronMuonPairs") oneDHists_.at(currentChannelIndex).at(histoName)->Fill(electrons->size()*muons->size(),scaleFactor);
1126 <      else if(objectToPlot == "electronTrackPairs") oneDHists_.at(currentChannelIndex).at(histoName)->Fill(electrons->size()*tracks->size(),scaleFactor);
1127 <      else if(objectToPlot == "events") oneDHists_.at(currentChannelIndex).at(histoName)->Fill(events->size(),scaleFactor);
1128 <      else if(objectToPlot == "taus") oneDHists_.at(currentChannelIndex).at(histoName)->Fill(taus->size(),scaleFactor);
1129 <      else if(objectToPlot == "mets") oneDHists_.at(currentChannelIndex).at(histoName)->Fill(mets->size(),scaleFactor);
1130 <      else if(objectToPlot == "tracks") oneDHists_.at(currentChannelIndex).at(histoName)->Fill(tracks->size(),scaleFactor);
1131 <      else if(objectToPlot == "genjets") oneDHists_.at(currentChannelIndex).at(histoName)->Fill(genjets->size(),scaleFactor);
1132 <      else if(objectToPlot == "mcparticles") oneDHists_.at(currentChannelIndex).at(histoName)->Fill(mcparticles->size(),scaleFactor);
1133 <      else if(objectToPlot == "bxlumis") oneDHists_.at(currentChannelIndex).at(histoName)->Fill(bxlumis->size(),scaleFactor);
847 <      else if(objectToPlot == "photons") oneDHists_.at(currentChannelIndex).at(histoName)->Fill(photons->size(),scaleFactor);
848 <      else if(objectToPlot == "superclusters") oneDHists_.at(currentChannelIndex).at(histoName)->Fill(superclusters->size(),scaleFactor);
849 <      else if(objectToPlot == "primaryvertexs"){
850 <        oneDHists_.at(currentChannelIndex).at(histoName+"BeforePileupCorrection")->Fill(primaryvertexs->size());
851 <        oneDHists_.at(currentChannelIndex).at(histoName+"AfterPileupCorrection")->Fill(primaryvertexs->size(),scaleFactor);
852 <      }
1078 >        //fills histograms with the sizes of collections
1079 >        for (uint currentObjectIndex = 0; currentObjectIndex != objectsToPlot.size(); currentObjectIndex++){
1080 >
1081 >          string currentObject = objectsToPlot.at(currentObjectIndex);
1082 >          string objectToPlot = "";
1083 >
1084 >          // Name of objectToPlot here must match the name specified in OSUAnalysis::OSUAnalysis().
1085 >          if(currentObject == "muon-muon pairs")                         objectToPlot = "dimuonPairs";
1086 >          else if(currentObject == "electron-electron pairs")            objectToPlot = "dielectronPairs";
1087 >          else if(currentObject == "electron-muon pairs")                objectToPlot = "electronMuonPairs";
1088 >          else if(currentObject == "electron-jet pairs")                 objectToPlot = "electronJetPairs";
1089 >          else if(currentObject == "muon-jet pairs")                     objectToPlot = "muonJetPairs";
1090 >          else if(currentObject == "jet-jet pairs")                      objectToPlot = "dijetPairs";
1091 >          else if(currentObject == "secondary jets")                     objectToPlot = "secondaryJets";
1092 >          else if(currentObject == "electron-track pairs")               objectToPlot = "electronTrackPairs";
1093 >          else if(currentObject == "muon-track pairs")                   objectToPlot = "muonTrackPairs";
1094 >          else if(currentObject == "muon-tau pairs")                     objectToPlot = "muonTauPairs";
1095 >          else if(currentObject == "tau-tau pairs")                      objectToPlot = "ditauPairs";
1096 >          else if(currentObject == "tau-track pairs")                    objectToPlot = "tauTrackPairs";
1097 >          else if(currentObject == "track-event pairs")                  objectToPlot = "trackEventPairs";
1098 >          else if(currentObject == "muon-secondary muon pairs")          objectToPlot = "muonSecondaryMuonPairs";
1099 >          else if(currentObject == "secondary muons")                    objectToPlot = "secondaryMuons";
1100 >          else if(currentObject == "electron-secondary electron pairs")  objectToPlot = "electronSecondaryElectronPairs";
1101 >          else if(currentObject == "secondary electrons")                objectToPlot = "secondaryElectrons";
1102 >          else if(currentObject == "electron-trigobj pairs")             objectToPlot = "electronTrigobjPairs";
1103 >          else if(currentObject == "muon-trigobj pairs")                 objectToPlot = "muonTrigobjPairs";
1104 >          else objectToPlot = currentObject;
1105 >
1106 >          string tempCurrentObject = objectToPlot;
1107 >          tempCurrentObject.at(0) = toupper(tempCurrentObject.at(0));
1108 >          string histoName = "num" + tempCurrentObject;
1109 >
1110 >          //set position of primary vertex in event, in order to calculate quantities relative to it
1111 >          if(find(objectsToCut.begin(), objectsToCut.end(), currentObject) != objectsToCut.end()) {
1112 >            vector<bool> lastCutFlags = cumulativeFlags.at(currentObject).at(currentDir);
1113 >            int numToPlot = 0;
1114 >            for (uint currentFlag = 0; currentFlag != lastCutFlags.size(); currentFlag++){
1115 >              if(lastCutFlags.at(currentFlag)) numToPlot++;
1116 >            }
1117 >            if(objectToPlot == "primaryvertexs"){
1118 >              oneDHists_.at(currentChannelIndex).at(currentCut).at(histoName+"BeforePileupCorrection")->Fill(primaryvertexs->size());
1119 >              oneDHists_.at(currentChannelIndex).at(currentCut).at(histoName+"AfterPileupCorrection")->Fill(primaryvertexs->size(),scaleFactor);
1120 >            }
1121 >            else {
1122 >              oneDHists_.at(currentChannelIndex).at(currentCut).at(histoName)->Fill(numToPlot,scaleFactor);
1123 >            }
1124 >          }
1125 >        } // end for (uint currentObjectIndex = 0; currentObjectIndex != objectsToPlot.size(); currentObjectIndex++)
1126 >        
1127 >        if (!BNTrees_.at(currentChannelIndex)) { cout << "ERROR:  Undefined BNTree.  Will likely seg fault." << endl; }  
1128 >        BNTrees_.at(currentChannelIndex)->Fill();  // only fill if event has passed cuts  
1129 >
1130 >      } // end if(eventPassedPreviousCuts.at(currentDir)){
1131 >    } // end loop over cuts
1132 >    
1133 >  } // end loop over channel
1134  
854 –    } // end for (uint currentObjectIndex = 0; currentObjectIndex != objectsToPlot.size(); currentObjectIndex++){
1135  
1136 <  } //end loop over channel
1136 >  masterCutFlow_->fillCutFlow(masterScaleFactor);
1137  
858 –  masterCutFlow_->fillCutFlow(scaleFactor);
1138  
1139   } // end void OSUAnalysis::analyze (const edm::Event &event, const edm::EventSetup &setup)
1140  
# Line 872 | Line 1151 | OSUAnalysis::evaluateComparison (double
1151    else if(comparison == "==") return testValue == cutValue;
1152    else if(comparison == "=") return testValue == cutValue;
1153    else if(comparison == "!=") return testValue != cutValue;
1154 <  else {std::cout << "WARNING: invalid comparison operator '" << comparison << "'\n"; return false;}
1154 >  else {cout << "WARNING: invalid comparison operator '" << comparison << "'\n"; return false;}
1155  
1156   }
1157  
1158   bool
1159 < OSUAnalysis::evaluateTriggers (vector<string> triggersToTest, const BNtriggerCollection* triggerCollection){
1159 > OSUAnalysis::evaluateComparison (string testValue, string comparison, string cutValue){
1160  
1161 +
1162 +  if(comparison == ">")       return testValue >  cutValue;
1163 +  else if(comparison == ">=") return testValue >= cutValue;
1164 +  else if(comparison == "<")  return testValue <  cutValue;
1165 +  else if(comparison == "<=") return testValue <= cutValue;
1166 +  else if(comparison == "==") return testValue == cutValue;
1167 +  else if(comparison == "=") return testValue == cutValue;
1168 +  else if(comparison == "!=") return testValue != cutValue;
1169 +  else {cout << "WARNING: invalid comparison operator '" << comparison << "'\n"; return false;}
1170 +
1171 + }
1172 +
1173 + bool
1174 + OSUAnalysis::evaluateTriggers (vector<string> triggersToTest, vector<string> triggersToVeto, const BNtriggerCollection* triggerCollection){
1175 +
1176 +  //initialize to false until a chosen trigger is passed
1177    bool triggerDecision = false;
1178  
1179 <  for (BNtriggerCollection::const_iterator trigger = triggerCollection->begin (); trigger != triggerCollection->end (); trigger++)
1180 <    {
1181 <      if(trigger->pass != 1) continue;
1182 <      for(uint triggerName = 0; triggerName != triggersToTest.size(); triggerName++)
1183 <        {
1184 <          if(trigger->name.find(triggersToTest.at(triggerName))!=std::string::npos){
1185 <            triggerDecision = true;
1186 <          }
1187 <        }
1188 <    }
1189 <  return triggerDecision;
1179 >  if (printAllTriggers_) cout << "Printing list of all available triggers (which this event may or may not pass):" << endl;  
1180 >  //loop over all triggers defined in the event
1181 >  for (BNtriggerCollection::const_iterator trigger = triggerCollection->begin (); trigger != triggerCollection->end (); trigger++){
1182 >
1183 >    if (printAllTriggers_) cout << "   " << trigger->name << endl;  
1184 >
1185 >    //we're only interested in triggers that actually passed
1186 >    if(trigger->pass != 1) continue;
1187 >
1188 >    //if the event passes one of the veto triggers, exit and return false
1189 >    for(uint triggerName = 0; triggerName != triggersToVeto.size(); triggerName++){
1190 >      if(trigger->name.find(triggersToVeto.at(triggerName))!=string::npos) return false;
1191 >    }
1192 >    //if the event passes one of the chosen triggers, set triggerDecision to true
1193 >    for(uint triggerName = 0; triggerName != triggersToTest.size(); triggerName++){
1194 >      if(trigger->name.find(triggersToTest.at(triggerName))!=string::npos) triggerDecision = true;
1195 >    }  
1196 >  }
1197 >
1198 >  printAllTriggers_ = false;  // only print triggers once, not every event  
1199  
1200 +  //if none of the veto triggers fired:
1201 +  //return the OR of all the chosen triggers
1202 +  if (triggersToTest.size() != 0) return triggerDecision;
1203 +  //or if no triggers were defined return true
1204 +  else return true;
1205   }
1206  
1207 < std::vector<std::string>
1207 >
1208 > vector<string>
1209   OSUAnalysis::splitString (string inputString){
1210  
1211 <  std::stringstream stringStream(inputString);
1212 <  std::istream_iterator<std::string> begin(stringStream);
1213 <  std::istream_iterator<std::string> end;
1214 <  std::vector<std::string> stringVector(begin, end);
1211 >  stringstream stringStream(inputString);
1212 >  istream_iterator<string> begin(stringStream);
1213 >  istream_iterator<string> end;
1214 >  vector<string> stringVector(begin, end);
1215    return stringVector;
1216  
1217   }
1218  
1219  
1220   void OSUAnalysis::getTwoObjs(string tempInputCollection, string& obj1, string& obj2) {
1221 <  // Set two object strings from the tempInputCollection string,
1222 <  // For example, if tempInputCollection is "electron-muon pairs",
1223 <  // then obj1 = "electrons" and obj2 = "muons".  
1224 <  // Note that the objects have an "s" appended.  
1221 >  // Set two object strings from the tempInputCollection string,
1222 >  // For example, if tempInputCollection is "electron-muon pairs",
1223 >  // then obj1 = "electrons" and obj2 = "muons".
1224 >  // Note that the objects have an "s" appended.
1225  
1226    int dashIndex = tempInputCollection.find("-");
1227    int spaceIndex = tempInputCollection.find_last_of(" ");
1228    int secondWordLength = spaceIndex - dashIndex;
1229 <  obj1 = tempInputCollection.substr(0,dashIndex) + "s";  
1229 >  obj1 = tempInputCollection.substr(0,dashIndex) + "s";
1230    obj2 = tempInputCollection.substr(dashIndex+1,secondWordLength-1)+"s";
1231 <  
1232 < }
1231 >
1232 > }
1233  
1234  
1235   string OSUAnalysis::getObjToGet(string obj) {
1236    // Return the string corresponding to the object to get for the given obj string.
1237 <  // Right now this only handles the case in which obj contains "secondary",
1238 <  // e.g, "secondary muons".  
1239 <  // Note that "s" is NOT appended.  
930 <  
931 <  if (obj.find("secondary")==std::string::npos) return obj;  // "secondary" is not found  
932 <  int firstSpaceIndex = obj.find_first_of(" ");  
933 <  return obj.substr(firstSpaceIndex+1,obj.length()-1);
1237 >  // Right now this only handles the case in which obj contains "secondary",
1238 >  // e.g, "secondary muons".
1239 >  // Note that "s" is NOT appended.
1240  
1241 < }  
1241 >  if (obj.find("secondary")==string::npos) return obj;  // "secondary" is not found
1242 >  int firstSpaceIndex = obj.find_first_of(" ");
1243 >  return obj.substr(firstSpaceIndex+1,obj.length()-1);
1244  
1245 + }
1246  
1247  
1248 + //!jet valueLookup
1249   double
1250 < OSUAnalysis::valueLookup (const BNjet* object, string variable, string function){
1250 > OSUAnalysis::valueLookup (const BNjet* object, string variable, string function, string &stringValue){
1251  
1252    double value = 0.0;
1253    if(variable == "energy") value = object->energy;
# Line 1057 | Line 1367 | OSUAnalysis::valueLookup (const BNjet* o
1367    else if(variable == "puJetId_loose_cutbased") value = object->puJetId_loose_cutbased;
1368  
1369  
1370 <  else{std::cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
1370 >  else{cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
1371  
1372    value = applyFunction(function, value);
1373  
# Line 1065 | Line 1375 | OSUAnalysis::valueLookup (const BNjet* o
1375   }
1376  
1377  
1378 <
1378 > //!muon valueLookup
1379   double
1380 < OSUAnalysis::valueLookup (const BNmuon* object, string variable, string function){
1380 > OSUAnalysis::valueLookup (const BNmuon* object, string variable, string function, string &stringValue){
1381  
1382    double value = 0.0;
1383    if(variable == "energy") value = object->energy;
# Line 1228 | Line 1538 | OSUAnalysis::valueLookup (const BNmuon*
1538    else if(variable == "relPFdBetaIso") value = (object->pfIsoR04SumChargedHadronPt + max(0.0, object->pfIsoR04SumNeutralHadronEt + object->pfIsoR04SumPhotonEt - 0.5*object->pfIsoR04SumPUPt)) / object->pt;
1539    else if(variable == "relPFrhoIso") value = ( object->chargedHadronIso + max(0.0, object->neutralHadronIso + object->photonIso - object->AEffDr03*object->rhoPrime) ) / object->pt;
1540    else if(variable == "metMT") {
1541 <    const BNmet *met = chosenMET ();
1232 <    if (met)
1541 >    if (const BNmet *met = chosenMET ())
1542        {
1543 <        TLorentzVector p1 (object->px, object->py, object->pz, object->energy),
1544 <          p2 (met->px, met->py, 0.0, met->pt);
1236 <
1237 <        value = (p1 + p2).Mt ();
1543 >        double dPhi = deltaPhi (object->phi, met->phi);
1544 >        value = sqrt (2 * object->pt * met->pt * (1 - cos (dPhi)));
1545        }
1546      else
1547        value = -999;
# Line 1352 | Line 1659 | OSUAnalysis::valueLookup (const BNmuon*
1659      value = object->isGlobalMuon > 0                \
1660        && object->isPFMuon > 0                        \
1661        && object->normalizedChi2 < 10                \
1662 <                                  && object->numberOfValidMuonHits > 0        \
1662 >      && object->numberOfValidMuonHits > 0        \
1663        && object->numberOfMatchedStations > 1        \
1664        && fabs(object->correctedD0Vertex) < 0.2        \
1665        && fabs(object->correctedDZ) < 0.5        \
# Line 1361 | Line 1668 | OSUAnalysis::valueLookup (const BNmuon*
1668    }
1669    else if(variable == "tightIDdisplaced"){
1670      value = object->isGlobalMuon > 0                \
1671 +      && object->isPFMuon > 0                        \
1672        && object->normalizedChi2 < 10                \
1673 <                                  && object->numberOfValidMuonHits > 0        \
1673 >      && object->numberOfValidMuonHits > 0        \
1674        && object->numberOfMatchedStations > 1        \
1675        && object->numberOfValidPixelHits > 0        \
1676        && object->numberOfLayersWithMeasurement > 5;
1677    }
1678  
1679 <  else if(variable == "genDeltaRLowest") value = getGenDeltaRLowest(object);
1679 >  else if(variable == "genDeltaRLowest") value = getGenDeltaRLowest(object);
1680  
1681    else if(variable == "genMatchedPdgId"){
1682      int index = getGenMatchedParticleIndex(object);
# Line 1388 | Line 1696 | OSUAnalysis::valueLookup (const BNmuon*
1696    }
1697    else if(variable == "genMatchedMotherIdReverse"){
1698      int index = getGenMatchedParticleIndex(object);
1699 <    if(index == -1) value = 23;
1700 <    else value = 23 -getPdgIdBinValue(mcparticles->at(index).motherId);
1699 >    if(index == -1) value = 24;
1700 >    else value = 24 - getPdgIdBinValue(mcparticles->at(index).motherId);
1701    }
1702    else if(variable == "genMatchedGrandmotherId"){
1703      int index = getGenMatchedParticleIndex(object);
# Line 1401 | Line 1709 | OSUAnalysis::valueLookup (const BNmuon*
1709      }
1710      else value = getPdgIdBinValue(mcparticles->at(index).grandMotherId);
1711    }
1712 +  else if(variable == "genMatchedGrandmotherIdReverse"){
1713 +    int index = getGenMatchedParticleIndex(object);
1714 +    if(index == -1) value = 24;
1715 +    else if(fabs(mcparticles->at(index).motherId) == 15){
1716 +      int motherIndex = findTauMotherIndex(&mcparticles->at(index));
1717 +      if(motherIndex == -1) value = 24;
1718 +      else value = 24 - getPdgIdBinValue(mcparticles->at(motherIndex).motherId);
1719 +    }
1720 +    else value = 24 - getPdgIdBinValue(mcparticles->at(index).grandMotherId);
1721 +  }
1722 +  else if(variable == "pfMuonsFromVertex"){
1723 +    double d0Error, dzError;
1724 +
1725 +    d0Error = hypot (object->tkD0err, hypot (chosenVertex ()->xError, chosenVertex ()->yError));
1726 +    dzError = hypot (object->tkDZerr, chosenVertex ()->zError);
1727 +    value = fabs (object->correctedD0Vertex) > 0.2 || fabs (object->correctedDZ) > 0.5
1728 +      || fabs (object->correctedD0Vertex / d0Error) > 99.0
1729 +      || fabs (object->correctedDZ / dzError) > 99.0;
1730 +    value = (object->isStandAloneMuon && !object->isTrackerMuon && !object->isGlobalMuon) || !value;
1731 +  }
1732  
1733  
1734  
1735 <  else{std::cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
1735 >  else{cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
1736  
1737    value = applyFunction(function, value);
1738  
1739    return value;
1740   }
1741  
1742 <
1742 > //!electron valueLookup
1743   double
1744 < OSUAnalysis::valueLookup (const BNelectron* object, string variable, string function){
1744 > OSUAnalysis::valueLookup (const BNelectron* object, string variable, string function, string &stringValue){
1745  
1746    double value = 0.0;
1747    if(variable == "energy") value = object->energy;
# Line 1579 | Line 1907 | OSUAnalysis::valueLookup (const BNelectr
1907    else if(variable == "detIso") value = (object->trackIso) / object->pt;
1908    else if(variable == "relPFrhoIso") value = ( object->chargedHadronIsoDR03 + max(0.0, object->neutralHadronIsoDR03 + object->photonIsoDR03 - object->AEffDr03*object->rhoPrime) ) / object->pt;
1909    else if(variable == "metMT") {
1910 <    const BNmet *met = chosenMET ();
1583 <    if (met)
1910 >    if (const BNmet *met = chosenMET ())
1911        {
1912 <        TLorentzVector p1 (object->px, object->py, object->pz, object->energy),
1913 <          p2 (met->px, met->py, 0.0, met->pt);
1587 <
1588 <        value = (p1 + p2).Mt ();
1912 >        double dPhi = deltaPhi (object->phi, met->phi);
1913 >        value = sqrt (2 * object->pt * met->pt * (1 - cos (dPhi)));
1914        }
1915      else
1916        value = -999;
# Line 1750 | Line 2075 | OSUAnalysis::valueLookup (const BNelectr
2075    }
2076  
2077  
2078 <  else if(variable == "genDeltaRLowest") value = getGenDeltaRLowest(object);
2078 >  else if(variable == "genDeltaRLowest") value = getGenDeltaRLowest(object);
2079  
2080    else if(variable == "genMatchedPdgId"){
2081      int index = getGenMatchedParticleIndex(object);
# Line 1771 | Line 2096 | OSUAnalysis::valueLookup (const BNelectr
2096    }
2097    else if(variable == "genMatchedMotherIdReverse"){
2098      int index = getGenMatchedParticleIndex(object);
2099 <    if(index == -1) value = 23;
2100 <    else value = 23 -getPdgIdBinValue(mcparticles->at(index).motherId);
2099 >    if(index == -1) value = 24;
2100 >    else value = 24 -getPdgIdBinValue(mcparticles->at(index).motherId);
2101    }
2102    else if(variable == "genMatchedGrandmotherId"){
2103      int index = getGenMatchedParticleIndex(object);
# Line 1784 | Line 2109 | OSUAnalysis::valueLookup (const BNelectr
2109      }
2110      else value = getPdgIdBinValue(mcparticles->at(index).grandMotherId);
2111    }
2112 +  else if(variable == "genMatchedGrandmotherIdReverse"){
2113 +    int index = getGenMatchedParticleIndex(object);
2114 +    if(index == -1) value = 24;
2115 +    else if(fabs(mcparticles->at(index).motherId) == 15){
2116 +      int motherIndex = findTauMotherIndex(&mcparticles->at(index));
2117 +      if(motherIndex == -1) value = 24;
2118 +      else value = 24 - getPdgIdBinValue(mcparticles->at(motherIndex).motherId);
2119 +    }
2120 +    else value = 24 - getPdgIdBinValue(mcparticles->at(index).grandMotherId);
2121 +  }
2122 +  else if(variable == "pfElectronsFromVertex"){
2123 +    double d0Error, dzError;
2124 +
2125 +    d0Error = hypot (object->tkD0err, hypot (chosenVertex ()->xError, chosenVertex ()->yError));
2126 +    dzError = hypot (object->tkDZerr, chosenVertex ()->zError);
2127 +    value = fabs (object->correctedD0Vertex) > 0.2 || fabs (object->correctedDZ) > 0.5
2128 +      || fabs (object->correctedD0Vertex / d0Error) > 99.0
2129 +      || fabs (object->correctedDZ / dzError) > 99.0;
2130 +    value = !value;
2131 +  }
2132  
2133  
2134  
2135 <  else{std::cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
2135 >  else{cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
2136  
2137    value = applyFunction(function, value);
2138  
2139    return value;
2140   }
2141  
2142 <
2142 > //!event valueLookup
2143   double
2144 < OSUAnalysis::valueLookup (const BNevent* object, string variable, string function){
2144 > OSUAnalysis::valueLookup (const BNevent* object, string variable, string function, string &stringValue){
2145  
2146    double value = 0.0;
2147  
# Line 1865 | Line 2210 | OSUAnalysis::valueLookup (const BNevent*
2210    else if(variable == "id2") value = object->id2;
2211    else if(variable == "evt") value = object->evt;
2212    else if(variable == "puScaleFactor"){
2213 <    if(datasetType_ != "data")
2213 >    if(doPileupReweighting_ && datasetType_ != "data")
2214        value = puWeight_->at (events->at (0).numTruePV);
2215      else
2216        value = 1.0;
2217    }
2218 <  else if(variable == "muonScaleFactor"){
2219 <    if(datasetType_ != "data")
2220 <      //      value = muonSFWeight_->at (chosenMuon ()->eta);
2221 <      value = 1.0;
2222 <    else
1878 <      value = 1.0;
1879 <  }
1880 <  else if(variable == "electronScaleFactor"){
1881 <    if(datasetType_ != "data")
1882 <      //      value = electronSFWeight_->at (chosenElectron ()->eta, chosenElectron ()->pt);
1883 <      value = 1.0;
1884 <    else
1885 <      value = 1.0;
1886 <  }
1887 <  else if(variable == "cTauScaleFactor")
1888 <    value = cTauScaleFactor_;
1889 <
1890 <  else{std::cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
2218 >  else if(variable == "muonScaleFactor") value = muonScaleFactor_;
2219 >  else if(variable == "electronScaleFactor") value = electronScaleFactor_;
2220 >  else if(variable == "stopCTauScaleFactor") value = stopCTauScaleFactor_;
2221 >  else if(variable == "bTagScaleFactor") value = bTagScaleFactor_;
2222 >  else{cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
2223  
2224    value = applyFunction(function, value);
2225  
2226    return value;
2227   }
2228  
2229 + //!tau valueLookup
2230   double
2231 < OSUAnalysis::valueLookup (const BNtau* object, string variable, string function){
2231 > OSUAnalysis::valueLookup (const BNtau* object, string variable, string function, string &stringValue){
2232  
2233    double value = 0.0;
2234  
# Line 1941 | Line 2274 | OSUAnalysis::valueLookup (const BNtau* o
2274  
2275  
2276  
2277 <  else if(variable == "genDeltaRLowest") value = getGenDeltaRLowest(object);
2277 >  else if(variable == "genDeltaRLowest") value = getGenDeltaRLowest(object);
2278  
2279    else if(variable == "genMatchedPdgId"){
2280      int index = getGenMatchedParticleIndex(object);
# Line 1961 | Line 2294 | OSUAnalysis::valueLookup (const BNtau* o
2294    }
2295    else if(variable == "genMatchedMotherIdReverse"){
2296      int index = getGenMatchedParticleIndex(object);
2297 <    if(index == -1) value = 23;
2298 <    else value = 23 -getPdgIdBinValue(mcparticles->at(index).motherId);
2297 >    if(index == -1) value = 24;
2298 >    else value = 24 -getPdgIdBinValue(mcparticles->at(index).motherId);
2299    }
2300    else if(variable == "genMatchedGrandmotherId"){
2301      int index = getGenMatchedParticleIndex(object);
# Line 1974 | Line 2307 | OSUAnalysis::valueLookup (const BNtau* o
2307      }
2308      else value = getPdgIdBinValue(mcparticles->at(index).grandMotherId);
2309    }
2310 +  else if(variable == "genMatchedGrandmotherIdReverse"){
2311 +    int index = getGenMatchedParticleIndex(object);
2312 +    if(index == -1) value = 24;
2313 +    else if(fabs(mcparticles->at(index).motherId) == 15){
2314 +      int motherIndex = findTauMotherIndex(&mcparticles->at(index));
2315 +      if(motherIndex == -1) value = 24;
2316 +      else value = 24 - getPdgIdBinValue(mcparticles->at(motherIndex).motherId);
2317 +    }
2318 +    else value = 24 - getPdgIdBinValue(mcparticles->at(index).grandMotherId);
2319 +  }
2320  
2321  
2322 <  else{std::cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
2322 >  else{cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
2323  
2324    value = applyFunction(function, value);
2325  
2326    return value;
2327   }
2328  
2329 + //!met valueLookup
2330   double
2331 < OSUAnalysis::valueLookup (const BNmet* object, string variable, string function){
2331 > OSUAnalysis::valueLookup (const BNmet* object, string variable, string function, string &stringValue){
2332  
2333    double value = 0.0;
2334  
# Line 2048 | Line 2392 | OSUAnalysis::valueLookup (const BNmet* o
2392    else if(variable == "pfT1jet10pt") value = object->pfT1jet10pt;
2393    else if(variable == "pfT1jet10phi") value = object->pfT1jet10phi;
2394  
2395 <  else{std::cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
2395 >  else{cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
2396  
2397    value = applyFunction(function, value);
2398  
2399    return value;
2400   }
2401  
2402 + //!track valueLookup
2403   double
2404 < OSUAnalysis::valueLookup (const BNtrack* object, string variable, string function){
2404 > OSUAnalysis::valueLookup (const BNtrack* object, string variable, string function, string &stringValue){
2405  
2406    double value = 0.0;
2407    double pMag = sqrt(object->pt * object->pt +
2408 <                     object->pz * object->pz);
2409 <  
2408 >                     object->pz * object->pz);
2409 >
2410    if(variable == "pt") value = object->pt;
2411    else if(variable == "px") value = object->px;
2412    else if(variable == "py") value = object->py;
# Line 2082 | Line 2427 | OSUAnalysis::valueLookup (const BNtrack*
2427  
2428  
2429    //additional BNs info for disappTrks
2085 –  else if(variable == "isGoodPtResolution") value = object->isGoodPtResolution;
2430    else if(variable == "caloEMDeltaRp3") value = object->caloEMDeltaRp3;
2431    else if(variable == "caloHadDeltaRp3") value = object->caloHadDeltaRp3;
2432    else if(variable == "caloEMDeltaRp4") value = object->caloEMDeltaRp4;
2433    else if(variable == "caloHadDeltaRp4") value = object->caloHadDeltaRp4;
2434    else if(variable == "caloEMDeltaRp5") value = object->caloEMDeltaRp5;
2435    else if(variable == "caloHadDeltaRp5") value = object->caloHadDeltaRp5;
2436 +  else if(variable == "nTracksRp5") value = object->nTracksRp5;
2437    else if(variable == "nHitsMissingOuter") value = object->nHitsMissingOuter;
2438    else if(variable == "nHitsMissingInner") value = object->nHitsMissingInner;
2439    else if(variable == "nHitsMissingMiddle") value = object->nHitsMissingMiddle;
2440 <  
2440 >  else if(variable == "depTrkRp5") value = object->depTrkRp5;
2441  
2442    //user defined variables
2443    else if(variable == "d0wrtBS") value = (object->vx-events->at(0).BSx)*object->py/object->pt - (object->vy-events->at(0).BSy)*object->px/object->pt;
2444    else if(variable == "dZwrtBS") value = object->dZ - events->at(0).BSz;
2445 +  else if(variable == "depTrkRp5MinusPt")           value =  (object->depTrkRp5 - object->pt);
2446    else if(variable == "caloTotDeltaRp5")            value =  (object->caloHadDeltaRp5 + object->caloEMDeltaRp5);
2447    else if(variable == "caloTotDeltaRp5ByP")         value = ((object->caloHadDeltaRp5 + object->caloEMDeltaRp5)/pMag);
2448 <  else if(variable == "caloTotDeltaRp5RhoCorr")     value = getTrkCaloTotRhoCorr(object);  
2449 <  else if(variable == "caloTotDeltaRp5ByPRhoCorr")  value = getTrkCaloTotRhoCorr(object) / pMag;  
2448 >  else if(variable == "caloTotDeltaRp5RhoCorr")     value = getTrkCaloTotRhoCorr(object);
2449 >  else if(variable == "caloTotDeltaRp5ByPRhoCorr")  value = getTrkCaloTotRhoCorr(object) / pMag;
2450    else if(variable == "isIso")                      value = getTrkIsIso(object, tracks.product());
2451    else if(variable == "isMatchedDeadEcal")          value = getTrkIsMatchedDeadEcal(object);
2452    else if(variable == "ptErrorByPt")                value = (object->ptError/object->pt);
2453    else if(variable == "ptError")                    value = object->ptError;
2454    else if(variable == "ptRes")                      value = getTrkPtRes(object);
2455 <  else if (variable == "d0wrtPV"){      
2456 <    double vx = object->vx - chosenVertex ()->x,        
2457 <      vy = object->vy - chosenVertex ()->y,      
2458 <      px = object->px,  
2459 <      py = object->py,  
2460 <      pt = object->pt;  
2461 <    value = (-vx * py + vy * px) / pt;  
2462 <  }      
2463 <  else if (variable == "dZwrtPV"){      
2464 <    double vx = object->vx - chosenVertex ()->x,        
2465 <      vy = object->vy - chosenVertex ()->y,      
2466 <      vz = object->vz - chosenVertex ()->z,      
2467 <      px = object->px,  
2468 <      py = object->py,  
2469 <      pz = object->pz,  
2470 <      pt = object->pt;  
2471 <    value = vz - (vx * px + vy * py)/pt * (pz/pt);      
2472 <  }    
2473 <  else if(variable == "genDeltaRLowest") value = getGenDeltaRLowest(object);
2455 >  else if (variable == "d0wrtPV"){
2456 >    double vx = object->vx - chosenVertex ()->x,
2457 >      vy = object->vy - chosenVertex ()->y,
2458 >      px = object->px,
2459 >      py = object->py,
2460 >      pt = object->pt;
2461 >    value = (-vx * py + vy * px) / pt;
2462 >  }
2463 >  else if (variable == "dZwrtPV"){
2464 >    double vx = object->vx - chosenVertex ()->x,
2465 >      vy = object->vy - chosenVertex ()->y,
2466 >      vz = object->vz - chosenVertex ()->z,
2467 >      px = object->px,
2468 >      py = object->py,
2469 >      pz = object->pz,
2470 >      pt = object->pt;
2471 >    value = vz - (vx * px + vy * py)/pt * (pz/pt);
2472 >  }
2473 >  else if(variable == "genDeltaRLowest") value = getGenDeltaRLowest(object);
2474  
2475    else if(variable == "genMatchedPdgId"){
2476      int index = getGenMatchedParticleIndex(object);
# Line 2145 | Line 2491 | OSUAnalysis::valueLookup (const BNtrack*
2491    }
2492    else if(variable == "genMatchedMotherIdReverse"){
2493      int index = getGenMatchedParticleIndex(object);
2494 <    if(index == -1) value = 23;
2495 <    else value = 23 -getPdgIdBinValue(mcparticles->at(index).motherId);
2494 >    if(index == -1) value = 24;
2495 >    else value = 24 -getPdgIdBinValue(mcparticles->at(index).motherId);
2496    }
2497    else if(variable == "genMatchedGrandmotherId"){
2498      int index = getGenMatchedParticleIndex(object);
# Line 2158 | Line 2504 | OSUAnalysis::valueLookup (const BNtrack*
2504      }
2505      else value = getPdgIdBinValue(mcparticles->at(index).grandMotherId);
2506    }
2507 +  else if(variable == "genMatchedGrandmotherIdReverse"){
2508 +    int index = getGenMatchedParticleIndex(object);
2509 +    if(index == -1) value = 24;
2510 +    else if(fabs(mcparticles->at(index).motherId) == 15){
2511 +      int motherIndex = findTauMotherIndex(&mcparticles->at(index));
2512 +      if(motherIndex == -1) value = 24;
2513 +      else value = 24 - getPdgIdBinValue(mcparticles->at(motherIndex).motherId);
2514 +    }
2515 +    else value = 24 - getPdgIdBinValue(mcparticles->at(index).grandMotherId);
2516 +  }
2517  
2518  
2519  
2520 <  else{std::cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
2520 >  else{cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
2521  
2522    value = applyFunction(function, value);
2523  
2524    return value;
2525   }
2526  
2527 + //!genjet valueLookup
2528   double
2529 < OSUAnalysis::valueLookup (const BNgenjet* object, string variable, string function){
2529 > OSUAnalysis::valueLookup (const BNgenjet* object, string variable, string function, string &stringValue){
2530  
2531    double value = 0.0;
2532  
# Line 2189 | Line 2546 | OSUAnalysis::valueLookup (const BNgenjet
2546    else if(variable == "charge") value = object->charge;
2547  
2548  
2549 <  else{std::cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
2549 >  else{cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
2550  
2551    value = applyFunction(function, value);
2552  
2553    return value;
2554   }
2555  
2556 + //!mcparticle valueLookup
2557   double
2558 < OSUAnalysis::valueLookup (const BNmcparticle* object, string variable, string function){
2558 > OSUAnalysis::valueLookup (const BNmcparticle* object, string variable, string function, string &stringValue){
2559  
2560    double value = 0.0;
2561  
# Line 2322 | Line 2680 | OSUAnalysis::valueLookup (const BNmcpart
2680    }
2681  
2682  
2683 <  else{std::cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
2683 >  else{cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
2684  
2685    value = applyFunction(function, value);
2686  
2687    return value;
2688   }
2689  
2690 + //!primaryvertex valueLookup
2691   double
2692 < OSUAnalysis::valueLookup (const BNprimaryvertex* object, string variable, string function){
2692 > OSUAnalysis::valueLookup (const BNprimaryvertex* object, string variable, string function, string &stringValue){
2693  
2694    double value = 0.0;
2695  
# Line 2349 | Line 2708 | OSUAnalysis::valueLookup (const BNprimar
2708    else if(variable == "isGood") value = object->isGood;
2709  
2710  
2711 <  else{std::cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
2711 >  else{cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
2712  
2713    value = applyFunction(function, value);
2714  
2715    return value;
2716   }
2717  
2718 + //!bxlumi valueLookup
2719   double
2720 < OSUAnalysis::valueLookup (const BNbxlumi* object, string variable, string function){
2720 > OSUAnalysis::valueLookup (const BNbxlumi* object, string variable, string function, string &stringValue){
2721  
2722    double value = 0.0;
2723  
# Line 2366 | Line 2726 | OSUAnalysis::valueLookup (const BNbxlumi
2726    else if(variable == "bx_LUMI_now") value = object->bx_LUMI_now;
2727  
2728  
2729 <  else{std::cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
2729 >  else{cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
2730  
2731    value = applyFunction(function, value);
2732  
2733    return value;
2734   }
2735  
2736 + //!photon valueLookup
2737   double
2738 < OSUAnalysis::valueLookup (const BNphoton* object, string variable, string function){
2738 > OSUAnalysis::valueLookup (const BNphoton* object, string variable, string function, string &stringValue){
2739  
2740    double value = 0.0;
2741  
# Line 2449 | Line 2810 | OSUAnalysis::valueLookup (const BNphoton
2810    else if(variable == "seedRecoFlag") value = object->seedRecoFlag;
2811  
2812  
2452 –
2813  
2814 <  else if(variable == "genDeltaRLowest") value = getGenDeltaRLowest(object);
2814 >
2815 >  else if(variable == "genDeltaRLowest") value = getGenDeltaRLowest(object);
2816  
2817    else if(variable == "genMatchedPdgId"){
2818      int index = getGenMatchedParticleIndex(object);
# Line 2473 | Line 2834 | OSUAnalysis::valueLookup (const BNphoton
2834    }
2835    else if(variable == "genMatchedMotherIdReverse"){
2836      int index = getGenMatchedParticleIndex(object);
2837 <    if(index == -1) value = 23;
2838 <    else value = 23 -getPdgIdBinValue(mcparticles->at(index).motherId);
2837 >    if(index == -1) value = 24;
2838 >    else value = 24 -getPdgIdBinValue(mcparticles->at(index).motherId);
2839    }
2840    else if(variable == "genMatchedGrandmotherId"){
2841      int index = getGenMatchedParticleIndex(object);
# Line 2486 | Line 2847 | OSUAnalysis::valueLookup (const BNphoton
2847      }
2848      else value = getPdgIdBinValue(mcparticles->at(index).grandMotherId);
2849    }
2850 +  else if(variable == "genMatchedGrandmotherIdReverse"){
2851 +    int index = getGenMatchedParticleIndex(object);
2852 +    if(index == -1) value = 24;
2853 +    else if(fabs(mcparticles->at(index).motherId) == 15){
2854 +      int motherIndex = findTauMotherIndex(&mcparticles->at(index));
2855 +      if(motherIndex == -1) value = 24;
2856 +      else value = 24 - getPdgIdBinValue(mcparticles->at(motherIndex).motherId);
2857 +    }
2858 +    else value = 24 - getPdgIdBinValue(mcparticles->at(index).grandMotherId);
2859 +  }
2860  
2861  
2862 <  else{std::cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
2862 >  else{cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
2863  
2864    value = applyFunction(function, value);
2865  
2866    return value;
2867   }
2868  
2869 + //!supercluster valueLookup
2870   double
2871 < OSUAnalysis::valueLookup (const BNsupercluster* object, string variable, string function){
2871 > OSUAnalysis::valueLookup (const BNsupercluster* object, string variable, string function, string &stringValue){
2872  
2873    double value = 0.0;
2874  
# Line 2510 | Line 2882 | OSUAnalysis::valueLookup (const BNsuperc
2882    else if(variable == "theta") value = object->theta;
2883  
2884  
2885 <  else{std::cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
2885 >  else{cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
2886  
2887    value = applyFunction(function, value);
2888  
2889    return value;
2890   }
2891  
2892 + //!trigobj valueLookup
2893 + double
2894 + OSUAnalysis::valueLookup (const BNtrigobj* object, string variable, string function, string &stringValue){
2895 +
2896 +  double value = 0.0;
2897  
2898 +  if(variable == "pt") value = object->pt;
2899 +  else if(variable == "eta") value = object->eta;
2900 +  else if(variable == "phi") value = object->phi;
2901 +  else if(variable == "px") value = object->px;
2902 +  else if(variable == "py") value = object->py;
2903 +  else if(variable == "pz") value = object->pz;
2904 +  else if(variable == "et") value = object->et;
2905 +  else if(variable == "energy") value = object->energy;
2906 +  else if(variable == "etTotal") value = object->etTotal;
2907 +  else if(variable == "id") value = object->id;
2908 +  else if(variable == "charge") value = object->charge;
2909 +  else if(variable == "isIsolated") value = object->isIsolated;
2910 +  else if(variable == "isMip") value = object->isMip;
2911 +  else if(variable == "isForward") value = object->isForward;
2912 +  else if(variable == "isRPC") value = object->isRPC;
2913 +  else if(variable == "bx") value = object->bx;
2914 +  else if(variable == "filter") {
2915 +    if ((stringValue = object->filter) == "")
2916 +      stringValue = "none";  // stringValue should only be empty if value is filled
2917 +  }
2918 +
2919 +  else{cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
2920 +
2921 +  value = applyFunction(function, value);
2922 +
2923 +  return value;
2924 + }
2925 +
2926 + //!muon-muon pair valueLookup
2927   double
2928 < OSUAnalysis::valueLookup (const BNmuon* object1, const BNmuon* object2, string variable, string function){
2928 > OSUAnalysis::valueLookup (const BNmuon* object1, const BNmuon* object2, string variable, string function, string &stringValue){
2929  
2930    double value = 0.0;
2931  
# Line 2581 | Line 2987 | OSUAnalysis::valueLookup (const BNmuon*
2987        value = object2->correctedD0;
2988      }
2989  
2990 <  else{std::cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
2990 >  else{cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
2991  
2992    value = applyFunction(function, value);
2993  
2994    return value;
2995   }
2996  
2997 + //!electron-electron pair valueLookup
2998   double
2999 < OSUAnalysis::valueLookup (const BNelectron* object1, const BNelectron* object2, string variable, string function){
2999 > OSUAnalysis::valueLookup (const BNelectron* object1, const BNelectron* object2, string variable, string function, string &stringValue){
3000  
3001    double value = 0.0;
3002  
# Line 2636 | Line 3043 | OSUAnalysis::valueLookup (const BNelectr
3043      value = object2->correctedD0;
3044    }
3045  
3046 <  else{std::cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
3046 >  else{cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
3047  
3048    value = applyFunction(function, value);
3049  
3050    return value;
3051   }
3052 <
3052 > //!electron-muon pair valueLookup
3053   double
3054 < OSUAnalysis::valueLookup (const BNelectron* object1, const BNmuon* object2, string variable, string function){
3054 > OSUAnalysis::valueLookup (const BNelectron* object1, const BNmuon* object2, string variable, string function, string &stringValue){
3055  
3056    double value = 0.0;
3057  
# Line 2702 | Line 3109 | OSUAnalysis::valueLookup (const BNelectr
3109    else if(variable == "muonRelPFdBetaIso"){
3110      value = (object2->pfIsoR04SumChargedHadronPt + max(0.0, object2->pfIsoR04SumNeutralHadronEt + object2->pfIsoR04SumPhotonEt - 0.5*object2->pfIsoR04SumPUPt)) / object2->pt;
3111    }
3112 +  else{cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
3113 +  value = applyFunction(function, value);
3114  
3115 <  else{std::cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
3115 >  return value;
3116 > }
3117  
3118 + //!electron-jet pair valueLookup
3119 + double
3120 + OSUAnalysis::valueLookup (const BNelectron* object1, const BNjet* object2, string variable, string function, string &stringValue){
3121 +
3122 +  double value = 0.0;
3123 +
3124 +  if(variable == "deltaPhi") value = fabs(deltaPhi(object1->phi,object2->phi));
3125 +  else if(variable == "deltaEta") value = fabs(object1->eta - object2->eta);
3126 +  else if(variable == "jetEta") value = object2->eta;
3127 +  else if(variable == "jetPhi") value = object2->phi;
3128 +  else if(variable == "electronEta") value = object1->eta;
3129 +  else if(variable == "electronPhi") value = object1->phi;
3130 +  else if(variable == "deltaR") value = deltaR(object1->eta,object1->phi,object2->eta,object2->phi);
3131 +  else if(variable == "invMass"){
3132 +    TLorentzVector fourVector1(object1->px, object1->py, object1->pz, object1->energy);
3133 +    TLorentzVector fourVector2(object2->px, object2->py, object2->pz, object2->energy);
3134 +    value = (fourVector1 + fourVector2).M();
3135 +  }
3136 +  else if(variable == "pt"){
3137 +    TLorentzVector fourVector1(object1->px, object1->py, object1->pz, object1->energy);
3138 +    TLorentzVector fourVector2(object2->px, object2->py, object2->pz, object2->energy);
3139 +    value = (fourVector1 + fourVector2).Pt();
3140 +  }
3141 +  else if(variable == "threeDAngle")
3142 +    {
3143 +      TVector3 threeVector1(object1->px, object1->py, object1->pz);
3144 +      TVector3 threeVector2(object2->px, object2->py, object2->pz);
3145 +      value = (threeVector1.Angle(threeVector2));
3146 +    }
3147 +  else if(variable == "chargeProduct"){
3148 +    value = object1->charge*object2->charge;
3149 +  }
3150 +
3151 +  else{cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
3152    value = applyFunction(function, value);
3153  
3154    return value;
3155   }
3156  
3157 + //!muon-jet pair valueLookup
3158 + double
3159 + OSUAnalysis::valueLookup (const BNmuon* object1, const BNjet* object2, string variable, string function, string &stringValue){
3160 +
3161 +  double value = 0.0;
3162  
3163 < double  
3164 < OSUAnalysis::valueLookup (const BNelectron* object1, const BNtrack* object2, string variable, string function){  
3165 <  double electronMass = 0.000511;        
3166 <  double value = 0.0;    
3167 <  TLorentzVector fourVector1(0, 0, 0, 0);        
2719 <  TLorentzVector fourVector2(0, 0, 0, 0);        
2720 <  if(variable == "deltaPhi") value = fabs(deltaPhi(object1->phi,object2->phi));  
3163 >  if(variable == "deltaPhi") value = fabs(deltaPhi(object1->phi,object2->phi));
3164 >  else if(variable == "jetEta") value = object2->eta;
3165 >  else if(variable == "jetPhi") value = object2->phi;
3166 >  else if(variable == "muonEta") value = object1->eta;
3167 >  else if(variable == "muonPhi") value = object1->phi;
3168    else if(variable == "deltaEta") value = fabs(object1->eta - object2->eta);
3169 <  else if(variable == "deltaR") value = deltaR(object1->eta,object1->phi,object2->eta,object2->phi);    
3170 <  else if(variable == "invMass"){        
3171 <    fourVector1.SetPtEtaPhiM(object1->pt, object1->eta, object1->phi, electronMass);    
3172 <    fourVector2.SetPtEtaPhiM(object2->pt, object2->eta, object2->phi, electronMass );    
3173 <        
3174 <    value = (fourVector1 + fourVector2).M();    
3169 >  else if(variable == "deltaR") value = deltaR(object1->eta,object1->phi,object2->eta,object2->phi);
3170 >  else if(variable == "invMass"){
3171 >    TLorentzVector fourVector1(object1->px, object1->py, object1->pz, object1->energy);
3172 >    TLorentzVector fourVector2(object2->px, object2->py, object2->pz, object2->energy);
3173 >    value = (fourVector1 + fourVector2).M();
3174 >  }
3175 >  else if(variable == "pt"){
3176 >    TLorentzVector fourVector1(object1->px, object1->py, object1->pz, object1->energy);
3177 >    TLorentzVector fourVector2(object2->px, object2->py, object2->pz, object2->energy);
3178 >    value = (fourVector1 + fourVector2).Pt();
3179    }
3180 <  else{std::cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}  
3181 <  value = applyFunction(function, value);        
3182 <  return value;  
3180 >  else if(variable == "threeDAngle")
3181 >    {
3182 >      TVector3 threeVector1(object1->px, object1->py, object1->pz);
3183 >      TVector3 threeVector2(object2->px, object2->py, object2->pz);
3184 >      value = (threeVector1.Angle(threeVector2));
3185 >    }
3186 >  else if(variable == "chargeProduct"){
3187 >    value = object1->charge*object2->charge;
3188 >  }
3189 >
3190 >  else{cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
3191 >  value = applyFunction(function, value);
3192 >
3193 >  return value;
3194 > }
3195 >
3196 > //!jet-jet pair valueLookup
3197 > double
3198 > OSUAnalysis::valueLookup (const BNjet* object1, const BNjet* object2, string variable, string function, string &stringValue){
3199 >
3200 >  double value = 0.0;
3201 >
3202 >  if(variable == "deltaPhi") value = fabs(deltaPhi(object1->phi,object2->phi));
3203 >  else if(variable == "deltaEta") value = fabs(object1->eta - object2->eta);
3204 >  else if(variable == "absDeltaPt") value = fabs(object1->pt - object2->pt);
3205 >  else if(variable == "deltaR") value = deltaR(object1->eta,object1->phi,object2->eta,object2->phi);
3206 >  else if(variable == "invMass"){
3207 >    TLorentzVector fourVector1(object1->px, object1->py, object1->pz, object1->energy);
3208 >    TLorentzVector fourVector2(object2->px, object2->py, object2->pz, object2->energy);
3209 >    value = (fourVector1 + fourVector2).M();
3210 >  }
3211 >  else if(variable == "pt"){
3212 >    TLorentzVector fourVector1(object1->px, object1->py, object1->pz, object1->energy);
3213 >    TLorentzVector fourVector2(object2->px, object2->py, object2->pz, object2->energy);
3214 >    value = (fourVector1 + fourVector2).Pt();
3215 >  }
3216 >  else if(variable == "threeDAngle")
3217 >    {
3218 >      TVector3 threeVector1(object1->px, object1->py, object1->pz);
3219 >      TVector3 threeVector2(object2->px, object2->py, object2->pz);
3220 >      value = (threeVector1.Angle(threeVector2));
3221 >    }
3222 >  else if(variable == "chargeProduct"){
3223 >    value = object1->charge*object2->charge;
3224 >  }
3225 >
3226 >  else{cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
3227 >  value = applyFunction(function, value);
3228 >
3229 >  return value;
3230   }
3231 + //!electron-track pair valueLookup
3232 + double
3233 + OSUAnalysis::valueLookup (const BNelectron* object1, const BNtrack* object2, string variable, string function, string &stringValue){
3234 +  double electronMass = 0.000511;
3235 +  double value = 0.0;
3236 +  TLorentzVector fourVector1(0, 0, 0, 0);
3237 +  TLorentzVector fourVector2(0, 0, 0, 0);
3238 +  if(variable == "deltaPhi") value = fabs(deltaPhi(object1->phi,object2->phi));
3239 +  else if(variable == "deltaEta") value = fabs(object1->eta - object2->eta);
3240 +  else if(variable == "deltaR") value = deltaR(object1->eta,object1->phi,object2->eta,object2->phi);
3241 +  else if(variable == "invMass"){
3242 +    fourVector1.SetPtEtaPhiM(object1->pt, object1->eta, object1->phi, electronMass);
3243 +    fourVector2.SetPtEtaPhiM(object2->pt, object2->eta, object2->phi, electronMass );
3244 +
3245 +    value = (fourVector1 + fourVector2).M();
3246 +  }
3247 +  else if(variable == "chargeProduct"){
3248 +    value = object1->charge*object2->charge;
3249 +  }
3250 +  else{std::cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
3251 +  value = applyFunction(function, value);
3252 +  return value;
3253  
3254 + }
3255  
3256  
3257 + //!muon-track pair valueLookup
3258   double
3259 < OSUAnalysis::valueLookup (const BNmuon* object1, const BNtrack* object2, string variable, string function){
3259 > OSUAnalysis::valueLookup (const BNmuon* object1, const BNtrack* object2, string variable, string function, string &stringValue){
3260    double pionMass = 0.140;
3261    double muonMass = 0.106;
3262    double value = 0.0;
# Line 2749 | Line 3271 | OSUAnalysis::valueLookup (const BNmuon*
3271  
3272      value = (fourVector1 + fourVector2).M();
3273    }
3274 +  else if(variable == "chargeProduct"){
3275 +    value = object1->charge*object2->charge;
3276 +  }
3277  
3278    else{std::cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
3279    value = applyFunction(function, value);
3280    return value;
3281   }
3282  
3283 <
3283 > //!tau-tau pair valueLookup
3284   double
3285 < OSUAnalysis::valueLookup (const BNtau* object1, const BNtau* object2, string variable, string function){
3285 > OSUAnalysis::valueLookup (const BNtau* object1, const BNtau* object2, string variable, string function, string &stringValue){
3286    double value = 0.0;
3287    if(variable == "deltaPhi") value = fabs(deltaPhi(object1->phi,object2->phi));
3288    else if(variable == "deltaEta") value = fabs(object1->eta - object2->eta);
# Line 2768 | Line 3293 | OSUAnalysis::valueLookup (const BNtau* o
3293      value = (fourVector1 + fourVector2).M();
3294    }
3295  
3296 +  else if(variable == "chargeProduct"){
3297 +    value = object1->charge*object2->charge;
3298 +  }
3299 +
3300    else{std::cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
3301    value = applyFunction(function, value);
3302    return value;
3303   }
3304  
3305 <
3305 > //!muon-tau pair valueLookup
3306   double
3307 < OSUAnalysis::valueLookup (const BNmuon* object1, const BNtau* object2, string variable, string function){
3307 > OSUAnalysis::valueLookup (const BNmuon* object1, const BNtau* object2, string variable, string function, string &stringValue){
3308    double value = 0.0;
3309    if(variable == "deltaPhi") value = fabs(deltaPhi(object1->phi,object2->phi));
3310    else if(variable == "deltaEta") value = fabs(object1->eta - object2->eta);
# Line 2786 | Line 3315 | OSUAnalysis::valueLookup (const BNmuon*
3315      value = (fourVector1 + fourVector2).M();
3316    }
3317  
3318 +  else if(variable == "chargeProduct"){
3319 +    value = object1->charge*object2->charge;
3320 +  }
3321 +
3322    else{std::cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
3323    value = applyFunction(function, value);
3324    return value;
3325   }
3326  
3327 + //!tau-track pair valueLookup
3328   double
3329 < OSUAnalysis::valueLookup (const BNtau* object1, const BNtrack* object2, string variable, string function){
3329 > OSUAnalysis::valueLookup (const BNtau* object1, const BNtrack* object2, string variable, string function, string &stringValue){
3330    double value = 0.0;
3331    if(variable == "deltaPhi") value = fabs(deltaPhi(object1->phi,object2->phi));
3332    else if(variable == "deltaR") value = deltaR(object1->eta,object1->phi,object2->eta,object2->phi);
3333 +  else if(variable == "chargeProduct"){
3334 +    value = object1->charge*object2->charge;
3335 +  }
3336  
3337    else{std::cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
3338    value = applyFunction(function, value);
# Line 2803 | Line 3340 | OSUAnalysis::valueLookup (const BNtau* o
3340   }
3341  
3342  
3343 <
3343 > //!track-event pair valueLookup
3344   double
3345 < OSUAnalysis::valueLookup (const BNtrack* object1, const BNevent* object2, string variable, string function){
3345 > OSUAnalysis::valueLookup (const BNtrack* object1, const BNevent* object2, string variable, string function, string &stringValue){
3346  
3347    double value = 0.0;
3348    double pMag = sqrt(object1->pt * object1->pt +
3349 <                     object1->pz * object1->pz);  
3349 >                     object1->pz * object1->pz);
3350  
3351    if      (variable == "numPV")                      value = object2->numPV;
3352    else if (variable == "caloTotDeltaRp5")            value =  (object1->caloHadDeltaRp5 + object1->caloEMDeltaRp5);
3353    else if (variable == "caloTotDeltaRp5ByP")         value = ((object1->caloHadDeltaRp5 + object1->caloEMDeltaRp5)/pMag);
3354 <  else if (variable == "caloTotDeltaRp5_RhoCorr")    value = getTrkCaloTotRhoCorr(object1);  
3355 <  else if (variable == "caloTotDeltaRp5ByP_RhoCorr") value = getTrkCaloTotRhoCorr(object1) / pMag;  
3354 >  else if (variable == "caloTotDeltaRp5_RhoCorr")    value = getTrkCaloTotRhoCorr(object1);
3355 >  else if (variable == "caloTotDeltaRp5ByP_RhoCorr") value = getTrkCaloTotRhoCorr(object1) / pMag;
3356  
3357 <  else { std::cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999; }
3357 >  else { cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999; }
3358  
3359    value = applyFunction(function, value);
3360  
3361    return value;
3362  
3363 < }  
3363 > }
3364 >
3365 > //!electron-trigobj pair valueLookup
3366 > double
3367 > OSUAnalysis::valueLookup (const BNelectron* object1, const BNtrigobj* object2, string variable, string function, string &stringValue){
3368 >
3369 >  double value = 0.0;
3370 >
3371 >  if (variable == "deltaR") value = deltaR(object1->eta,object1->phi,object2->eta,object2->phi);
3372 >  else if (variable == "match"){
3373 >    if (deltaR(object1->eta,object1->phi,object2->eta,object2->phi) < 0.2 && abs(object2->id) == 11)
3374 >      stringValue = object2->filter;
3375 >    else
3376 >      stringValue = "none";
3377 >  }
3378 >
3379 >  else { cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999; }
3380 >
3381 >  value = applyFunction(function, value);
3382 >
3383 >  return value;
3384 >
3385 > }
3386 >
3387 > //!muon-trigobj pair valueLookup
3388 > double
3389 > OSUAnalysis::valueLookup (const BNmuon* object1, const BNtrigobj* object2, string variable, string function, string &stringValue){
3390 >
3391 >  double value = 0.0;
3392 >
3393 >  if (variable == "deltaR") value = deltaR(object1->eta,object1->phi,object2->eta,object2->phi);
3394 >
3395 >  else { cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999; }
3396 >
3397 >  value = applyFunction(function, value);
3398 >
3399 >  return value;
3400 >
3401 > }
3402 >
3403 > //!stop valueLookup
3404 > double
3405 > OSUAnalysis::valueLookup (const BNstop* object, string variable, string function, string &stringValue){
3406 >
3407 >
3408 >  double value = 0.0;
3409 >
3410 >  if(variable == "ctau") value = object->ctau;
3411 >
3412 >  else if (variable == "d0"){
3413 >    double vx = object->vx - chosenVertex ()->x,
3414 >      vy = object->vy - chosenVertex ()->y,
3415 >      px = object->px,
3416 >      py = object->py,
3417 >      pt = object->pt;
3418 >    value = (-vx * py + vy * px) / pt;
3419 >  }
3420 >
3421 >  else if (variable == "dz"){
3422 >    double vx = object->vx - chosenVertex ()->x,
3423 >      vy = object->vy - chosenVertex ()->y,
3424 >      vz = object->vz - chosenVertex ()->z,
3425 >      px = object->px,
3426 >      py = object->py,
3427 >      pz = object->pz,
3428 >      pt = object->pt;
3429 >    value = vz - (vx * px + vy * py)/pt * (pz/pt);
3430 >  }
3431 >
3432 >  else if (variable == "minD0"){
3433 >    double minD0=999;
3434 >    for(BNprimaryvertexCollection::const_iterator vertex = primaryvertexs->begin (); vertex != primaryvertexs->end (); vertex++){
3435 >      double vx = object->vx - vertex->x,
3436 >        vy = object->vy - vertex->y,
3437 >        px = object->px,
3438 >        py = object->py,
3439 >        pt = object->pt;
3440 >      value = (-vx * py + vy * px) / pt;
3441 >      if(abs(value) < abs(minD0)) minD0 = value;
3442 >    }
3443 >    value = minD0;
3444 >  }
3445 >  else if (variable == "minDz"){
3446 >    double minDz=999;
3447 >    for(BNprimaryvertexCollection::const_iterator vertex = primaryvertexs->begin (); vertex != primaryvertexs->end (); vertex++){
3448 >      double vx = object->vx - vertex->x,
3449 >        vy = object->vy - vertex->y,
3450 >        vz = object->vz - vertex->z,
3451 >        px = object->px,
3452 >        py = object->py,
3453 >        pz = object->pz,
3454 >        pt = object->pt;
3455 >      value = vz - (vx * px + vy * py)/pt * (pz/pt);
3456 >      if(abs(value) < abs(minDz)) minDz = value;
3457 >    }
3458 >    value = minDz;
3459 >  }
3460 >  else if(variable == "distToVertex"){
3461 >    value = sqrt((object->vx-chosenVertex()->x)*(object->vx-chosenVertex()->x) + \
3462 >                 (object->vy-chosenVertex()->y)*(object->vy-chosenVertex()->y) + \
3463 >                 (object->vz-chosenVertex()->z)*(object->vz-chosenVertex()->z));
3464 >  }
3465 >  else if (variable == "minDistToVertex"){
3466 >    double minDistToVertex=999;
3467 >    for(BNprimaryvertexCollection::const_iterator vertex = primaryvertexs->begin (); vertex != primaryvertexs->end (); vertex++){
3468 >      value = sqrt((object->vx-vertex->x)*(object->vx-vertex->x) + \
3469 >                   (object->vy-vertex->y)*(object->vy-vertex->y) + \
3470 >                   (object->vz-vertex->z)*(object->vz-vertex->z));
3471 >
3472 >      if(abs(value) < abs(minDistToVertex)) minDistToVertex = value;
3473 >    }
3474 >    value = minDistToVertex;
3475 >  }
3476 >  else if (variable == "distToVertexDifference"){
3477 >    double minDistToVertex=999;
3478 >    for(BNprimaryvertexCollection::const_iterator vertex = primaryvertexs->begin (); vertex != primaryvertexs->end (); vertex++){
3479 >      value = sqrt((object->vx-vertex->x)*(object->vx-vertex->x) + \
3480 >                   (object->vy-vertex->y)*(object->vy-vertex->y) + \
3481 >                   (object->vz-vertex->z)*(object->vz-vertex->z));
3482 >
3483 >      if(abs(value) < abs(minDistToVertex)) minDistToVertex = value;
3484 >    }
3485 >    double distToChosenVertex = sqrt((object->vx-chosenVertex()->x)*(object->vx-chosenVertex()->x) + \
3486 >                                     (object->vy-chosenVertex()->y)*(object->vy-chosenVertex()->y) + \
3487 >                                     (object->vz-chosenVertex()->z)*(object->vz-chosenVertex()->z));
3488 >
3489 >    value = distToChosenVertex - minDistToVertex;
3490 >  }
3491 >
3492 >  else if (variable == "closestVertexRank"){
3493 >    double minDistToVertex=999;
3494 >    int vertex_rank = 0;
3495 >    for(BNprimaryvertexCollection::const_iterator vertex = primaryvertexs->begin (); vertex != primaryvertexs->end (); vertex++){
3496 >      vertex_rank++;
3497 >      int dist = sqrt((object->vx-vertex->x)*(object->vx-vertex->x) + \
3498 >                      (object->vy-vertex->y)*(object->vy-vertex->y) + \
3499 >                      (object->vz-vertex->z)*(object->vz-vertex->z));
3500 >
3501 >      if(abs(dist) < abs(minDistToVertex)){
3502 >        value = vertex_rank;
3503 >        minDistToVertex = dist;
3504 >      }
3505 >    }
3506 >  }
3507 >
3508 >
3509 >
3510 >
3511 >  else { cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999; }
3512 >
3513 >  value = applyFunction(function, value);
3514 >
3515 >  return value;
3516 >
3517 > }
3518 >
3519 >
3520 >
3521  
3522   // Calculate the number of tracks in cone of DeltaR<0.5 around track1.
3523   // Return true iff no other tracks are found in this cone.
# Line 2872 | Line 3566 | OSUAnalysis::getTrkPtTrue (const BNtrack
3566  
3567   double
3568   OSUAnalysis::getTrkCaloTotRhoCorr(const BNtrack* track) {
3569 <  // Return the pile-up (rho) corrected isolation energy, i.e., the total calorimeter energy around the candidate track.  
3570 <  if (!useTrackCaloRhoCorr_) return -99;  
3571 <  // if (!rhokt6CaloJetsHandle_) {
3572 <  //   cout << "ERROR [getTrkCaloTotRhoCorr]:  The collection rhokt6CaloJetsHandle is not available!" << endl;  
3573 <  //   return -99;  
3569 >  // Return the pile-up (rho) corrected isolation energy, i.e., the total calorimeter energy around the candidate track.
3570 >  if (!useTrackCaloRhoCorr_) return -99;
3571 >  // if (!rhokt6CaloJetsHandle_) {
3572 >  //   cout << "ERROR [getTrkCaloTotRhoCorr]:  The collection rhokt6CaloJetsHandle is not available!" << endl;
3573 >  //   return -99;
3574    // }
3575 <  double radDeltaRCone = 0.5;  
3576 <  double rhoCorr_kt6CaloJets = *rhokt6CaloJetsHandle_ * TMath::Pi() * pow(radDeltaRCone, 2);  // Define effective area as pi*r^2, where r is radius of DeltaR cone.  
3577 <  double rawCaloTot = track->caloHadDeltaRp5 + track->caloEMDeltaRp5;  
3578 <  double caloTotRhoCorrCalo = TMath::Max(0., rawCaloTot - rhoCorr_kt6CaloJets);  
3579 <  return caloTotRhoCorrCalo;  
3580 <
3575 >  double radDeltaRCone = 0.5;
3576 >  double rhoCorr_kt6CaloJets = *rhokt6CaloJetsHandle_ * TMath::Pi() * pow(radDeltaRCone, 2);  // Define effective area as pi*r^2, where r is radius of DeltaR cone.
3577 >  double rawCaloTot = track->caloHadDeltaRp5 + track->caloEMDeltaRp5;
3578 >  double caloTotRhoCorrCalo = TMath::Max(0., rawCaloTot - rhoCorr_kt6CaloJets);
3579 >  return caloTotRhoCorrCalo;
3580 >
3581   }
3582  
3583  
# Line 2921 | Line 3615 | OSUAnalysis::getTrkIsMatchedDeadEcal (co
3615    double deltaRLowest = 999;
3616    int value = 0;
3617    if (DeadEcalVec.size() == 0) WriteDeadEcal();
3618 <  for(std::vector<DeadEcal>::const_iterator ecal = DeadEcalVec.begin(); ecal != DeadEcalVec.end(); ++ecal){
3618 >  for(vector<DeadEcal>::const_iterator ecal = DeadEcalVec.begin(); ecal != DeadEcalVec.end(); ++ecal){
3619      double eta = ecal->etaEcal;
3620      double phi = ecal->phiEcal;
3621 <    double deltaRtemp = deltaR(eta, track1->eta, phi, track1->phi);
3621 >    double deltaRtemp = deltaR(eta, phi, track1->eta, track1->phi);
3622      if(deltaRtemp < deltaRLowest) deltaRLowest = deltaRtemp;
3623    }
3624    if (deltaRLowest<0.05) {value = 1;}
# Line 2932 | Line 3626 | OSUAnalysis::getTrkIsMatchedDeadEcal (co
3626    return value;
3627   }
3628  
3629 < // Returns the smallest DeltaR between the object and any generated true particle in the event.  
3629 > // Returns the smallest DeltaR between the object and any generated true particle in the event.
3630   template <class InputObject>
3631   double OSUAnalysis::getGenDeltaRLowest(InputObject object){
3632    double genDeltaRLowest = 999.;
# Line 2952 | Line 3646 | OSUAnalysis::applyFunction(string functi
3646    else if(function == "log") value = log10(value);
3647  
3648    else if(function == "") value = value;
3649 <  else{std::cout << "WARNING: invalid function '" << function << "'\n";}
3649 >  else{cout << "WARNING: invalid function '" << function << "'\n";}
3650  
3651    return value;
3652  
# Line 2961 | Line 3655 | OSUAnalysis::applyFunction(string functi
3655  
3656   template <class InputCollection>
3657   void OSUAnalysis::setObjectFlags(cut &currentCut, uint currentCutIndex, flagMap &individualFlags, flagMap &cumulativeFlags, InputCollection inputCollection, string inputType){
3658 <
3659 <  if (currentCut.inputCollection.find("pair")!=std::string::npos)  {
3660 <    string obj1, obj2;
3658 >
3659 >  if (currentCut.inputCollection.find("pair")!=string::npos)  {
3660 >    string obj1, obj2;
3661      getTwoObjs(currentCut.inputCollection, obj1, obj2);
3662      if (inputType==obj1 ||
3663 <        inputType==obj2) {
3663 >        inputType==obj2) {
3664        // Do not add a cut to individualFlags or cumulativeFlags, if the cut is on a paired collection,
3665 <      // and the inputType is a member of the pair.  
3666 <      // The cut will instead be applied when the setObjectFlags() is called for the paired collection.  
3667 <      // For example, if currentCut.inputCollection==electron-muon pairs,
3668 <      // then the flags should not be set here when inputType==muons or inputType==electrons.  
3669 <      return;
3670 <    }  
3671 <  }    
3665 >      // and the inputType is a member of the pair.
3666 >      // The cut will instead be applied when the setObjectFlags() is called for the paired collection.
3667 >      // For example, if currentCut.inputCollection==electron-muon pairs,
3668 >      // then the flags should not be set here when inputType==muons or inputType==electrons.
3669 >      return;
3670 >    }
3671 >  }
3672  
3673    for (uint object = 0; object != inputCollection->size(); object++){
3674  
# Line 2984 | Line 3678 | void OSUAnalysis::setObjectFlags(cut &cu
3678  
3679        vector<bool> subcutDecisions;
3680        for( int subcutIndex = 0; subcutIndex != currentCut.numSubcuts; subcutIndex++){
3681 <        double value = valueLookup(&inputCollection->at(object), currentCut.variables.at(subcutIndex), currentCut.functions.at(subcutIndex));
3682 <        subcutDecisions.push_back(evaluateComparison(value,currentCut.comparativeOperators.at(subcutIndex),currentCut.cutValues.at(subcutIndex)));
3681 >        string stringValue = "";
3682 >        double value = valueLookup(&inputCollection->at(object), currentCut.variables.at(subcutIndex), currentCut.functions.at(subcutIndex), stringValue);
3683 >        if (stringValue == "") subcutDecisions.push_back(evaluateComparison(value,currentCut.comparativeOperators.at(subcutIndex),currentCut.cutValues.at(subcutIndex)));
3684 >        else subcutDecisions.push_back(evaluateComparison(stringValue,currentCut.comparativeOperators.at(subcutIndex),currentCut.cutStringValues.at(subcutIndex)));
3685  
3686        }
3687        if(currentCut.numSubcuts == 1) decision = subcutDecisions.at(0);
# Line 3024 | Line 3720 | void OSUAnalysis::setObjectFlags(cut &cu
3720    bool sameObjects = false;
3721    if(typeid(InputCollection1).name() == typeid(InputCollection2).name()) sameObjects = true;
3722  
3723 <  // Get the strings for the two objects that make up the pair.  
3724 <  string obj1Type, obj2Type;
3723 >  // Get the strings for the two objects that make up the pair.
3724 >  string obj1Type, obj2Type;
3725    getTwoObjs(inputType, obj1Type, obj2Type);
3726    bool isTwoTypesOfObject = true;
3727 <  if (obj1Type==obj2Type) isTwoTypesOfObject = false;  
3727 >  if (obj1Type==obj2Type) isTwoTypesOfObject = false;
3728  
3729 <  // Initialize the flags for individual objects to all be false, if the cut is on the pair.  
3730 <  // Set them to true later, if any paired object passes (in which case both of its constituents should pass).  
3731 <  if (currentCut.inputCollection == inputType) {    
3729 >  // Initialize the flags for individual objects to all be false, if the cut is on the pair.
3730 >  // Set them to true later, if any paired object passes (in which case both of its constituents should pass).
3731 >  if (currentCut.inputCollection == inputType) {
3732      for (uint object1 = 0; object1 != inputCollection1->size(); object1++) {
3733 <      individualFlags.at(obj1Type).at(currentCutIndex).push_back(false);
3733 >      individualFlags.at(obj1Type).at(currentCutIndex).push_back(false);
3734        cumulativeFlags.at(obj1Type).at(currentCutIndex).push_back(false);
3735      }
3736 <    if (isTwoTypesOfObject) { // Only initialize the second object if it is different from the first.  
3736 >    if (isTwoTypesOfObject) { // Only initialize the second object if it is different from the first.
3737        for (uint object2 = 0; object2 != inputCollection2->size(); object2++)  {
3738 <        individualFlags.at(obj2Type).at(currentCutIndex).push_back(false);
3739 <        cumulativeFlags.at(obj2Type).at(currentCutIndex).push_back(false);
3738 >        individualFlags.at(obj2Type).at(currentCutIndex).push_back(false);
3739 >        cumulativeFlags.at(obj2Type).at(currentCutIndex).push_back(false);
3740        }
3741      }
3742    }
3743 <  
3743 >
3744    int counter = 0;
3745  
3746    for (uint object1 = 0; object1 != inputCollection1->size(); object1++){
# Line 3059 | Line 3755 | void OSUAnalysis::setObjectFlags(cut &cu
3755  
3756          vector<bool> subcutDecisions;
3757          for( int subcutIndex = 0; subcutIndex != currentCut.numSubcuts; subcutIndex++){
3758 <          double value = valueLookup(&inputCollection1->at(object1), &inputCollection2->at(object2), currentCut.variables.at(subcutIndex), currentCut.functions.at(subcutIndex));
3759 <          subcutDecisions.push_back(evaluateComparison(value,currentCut.comparativeOperators.at(subcutIndex),currentCut.cutValues.at(subcutIndex)));
3758 >          string stringValue = "";
3759 >          double value = valueLookup(&inputCollection1->at(object1), &inputCollection2->at(object2), currentCut.variables.at(subcutIndex), currentCut.functions.at(subcutIndex), stringValue);
3760 >          if (stringValue == "") subcutDecisions.push_back(evaluateComparison(value,currentCut.comparativeOperators.at(subcutIndex),currentCut.cutValues.at(subcutIndex)));
3761 >          else subcutDecisions.push_back(evaluateComparison(stringValue,currentCut.comparativeOperators.at(subcutIndex),currentCut.cutStringValues.at(subcutIndex)));
3762          }
3763  
3764          if(currentCut.numSubcuts == 1) decision = subcutDecisions.at(0);
# Line 3075 | Line 3773 | void OSUAnalysis::setObjectFlags(cut &cu
3773            decision = tempDecision;
3774          }
3775        }
3776 <      // if (decision) isPassObj1.at(object1) = true;
3777 <      // if (decision) isPassObj2.at(object2) = true;
3778 <      individualFlags.at(inputType).at(currentCutIndex).push_back(decision);  
3779 <      if (decision && currentCut.inputCollection == inputType) {  // only set the flags for the individual objects if the pair object is being cut on  
3780 <        individualFlags.at(obj1Type).at(currentCutIndex).at(object1) = true;  
3781 <        individualFlags.at(obj2Type).at(currentCutIndex).at(object2) = true;  
3782 <      }  
3776 >      // if (decision) isPassObj1.at(object1) = true;
3777 >      // if (decision) isPassObj2.at(object2) = true;
3778 >      individualFlags.at(inputType).at(currentCutIndex).push_back(decision);
3779 >      if (decision && currentCut.inputCollection == inputType) {  // only set the flags for the individual objects if the pair object is being cut on
3780 >        individualFlags.at(obj1Type).at(currentCutIndex).at(object1) = true;
3781 >        individualFlags.at(obj2Type).at(currentCutIndex).at(object2) = true;
3782 >      }
3783  
3784        //set flags for objects that pass each cut AND all the previous cuts
3785        bool previousCumulativeFlag = true;
# Line 3096 | Line 3794 | void OSUAnalysis::setObjectFlags(cut &cu
3794        else if(flags2.size() == 0) currentCumulativeFlag = previousCumulativeFlag && decision && flags1.at(object1);
3795        else currentCumulativeFlag = previousCumulativeFlag && decision && flags1.at(object1) && flags2.at(object2);
3796        cumulativeFlags.at(inputType).at(currentCutIndex).push_back(currentCumulativeFlag);
3797 <      if (currentCumulativeFlag && currentCut.inputCollection == inputType) {  // only set the flags for the individual objects if the pair object is being cut on  
3798 <        cumulativeFlags.at(obj1Type).at(currentCutIndex).at(object1) = true && getPreviousCumulativeFlags(currentCutIndex, individualFlags, obj1Type, object1);  
3799 <        cumulativeFlags.at(obj2Type).at(currentCutIndex).at(object2) = true && getPreviousCumulativeFlags(currentCutIndex, individualFlags, obj2Type, object2);  
3797 >      if (currentCumulativeFlag && currentCut.inputCollection == inputType) {  // only set the flags for the individual objects if the pair object is being cut on
3798 >        cumulativeFlags.at(obj1Type).at(currentCutIndex).at(object1) = true && getPreviousCumulativeFlags(currentCutIndex, individualFlags, obj1Type, object1);
3799 >        cumulativeFlags.at(obj2Type).at(currentCutIndex).at(object2) = true && getPreviousCumulativeFlags(currentCutIndex, individualFlags, obj2Type, object2);
3800        }
3801        counter++;
3802  
3803 <    } // end   for (uint object2 = 0; object2 != inputCollection2->size(); object2++){
3804 <  }  // end   for (uint object1 = 0; object1 != inputCollection1->size(); object1++){
3803 >    } // end   for (uint object2 = 0; object2 != inputCollection2->size(); object2++)
3804 >  }  // end   for (uint object1 = 0; object1 != inputCollection1->size(); object1++)
3805  
3806   }
3807  
3808  
3809   bool OSUAnalysis::getPreviousCumulativeFlags(uint currentCutIndex, flagMap &individualFlags, string obj1Type, uint object1) {
3810 <  // Return true iff for the collection obj1Type, the element with index object1 has individal flags set to true for
3811 <  // all cuts up to currentCutIndex  
3812 <  bool previousCumulativeFlag = true;  
3813 <  for (uint previousCutIndex = 0; previousCutIndex < currentCutIndex; previousCutIndex++) {  
3810 >  // Return true iff for the collection obj1Type, the element with index object1 has individal flags set to true for
3811 >  // all cuts up to currentCutIndex
3812 >  bool previousCumulativeFlag = true;
3813 >  for (uint previousCutIndex = 0; previousCutIndex < currentCutIndex; previousCutIndex++) {
3814      if (previousCumulativeFlag && individualFlags.at(obj1Type).at(previousCutIndex).at(object1)) previousCumulativeFlag = true;
3815 <    else {  
3816 <      previousCumulativeFlag = false; break;  
3815 >    else {
3816 >      previousCumulativeFlag = false; break;
3817      }
3818    }
3819 <  return previousCumulativeFlag;  
3820 < }  
3819 >  return previousCumulativeFlag;
3820 > }
3821 >
3822 >
3823 >
3824 > template <class InputCollection>
3825 > void OSUAnalysis::assignTreeBranch(BranchSpecs parameters, InputCollection inputCollection, vector<bool> flags){
3826 >  // This function is similar to fill1DHistogram(), but instead of filling a histogram it assigns a value to a variable for the BNTree  
3827 >
3828 >  if (BNTreeBranchVals_.count(parameters.name)==0) cout << "Error[assignTreeBranch]:  trying to assign value to " << parameters.name << " that does not have a branch set up.  Will likely seg fault." << endl;  
3829 >  for (uint object = 0; object != inputCollection->size(); object++) {  
3830 >
3831 >    if (!plotAllObjectsInPassingEvents_ && !flags.at(object)) continue;  
3832 >
3833 >    string inputVariable = parameters.inputVariable;
3834 >    string function = "";
3835 >    string stringValue = "";  
3836 >    double value = valueLookup(&inputCollection->at(object), inputVariable, function, stringValue);  
3837 >    BNTreeBranchVals_.at(parameters.name).push_back(value);  
3838 >
3839 >  }
3840 > }
3841  
3842  
3843   template <class InputCollection>
# Line 3132 | Line 3850 | void OSUAnalysis::fill1DHistogram(TH1* h
3850      string currentString = parameters.inputVariables.at(0);
3851      string inputVariable = "";
3852      string function = "";
3853 <    if(currentString.find("(")==std::string::npos){
3853 >    if(currentString.find("(")==string::npos){
3854        inputVariable = currentString;// variable to cut on
3855      }
3856      else{
3857        function = currentString.substr(0,currentString.find("("));//function comes before the "("
3858        inputVariable = currentString.substr(currentString.find("(")+1);//get rest of string
3859        inputVariable = inputVariable.substr(0,inputVariable.size()-1);//remove trailing ")"
3860 <    }
3860 >    }  
3861  
3862 <    double value = valueLookup(&inputCollection->at(object), inputVariable, function);
3863 <    histo->Fill(value,scaleFactor);
3862 >    string stringValue = "";  
3863 >    double value = valueLookup(&inputCollection->at(object), inputVariable, function, stringValue);  
3864 >    histo->Fill(value,scaleFactor);  
3865  
3866      if (printEventInfo_) {
3867 <      // Write information about event to screen, for testing purposes.  
3868 <      cout << "  Info for event:  value for histogram " << histo->GetName() << ":  " << value << endl;  
3867 >      // Write information about event to screen, for testing purposes.
3868 >      cout << "  Info for event:  value for histogram " << histo->GetName() << ":  " << value << endl;
3869      }
3870 <    
3870 >
3871    }
3872   }
3873  
# Line 3173 | Line 3892 | void OSUAnalysis::fill1DHistogram(TH1* h
3892        string currentString = parameters.inputVariables.at(0);
3893        string inputVariable = "";
3894        string function = "";
3895 <      if(currentString.find("(")==std::string::npos){
3895 >      if(currentString.find("(")==string::npos){
3896          inputVariable = currentString;// variable to cut on
3897        }
3898        else{
# Line 3182 | Line 3901 | void OSUAnalysis::fill1DHistogram(TH1* h
3901          inputVariable = inputVariable.substr(0,inputVariable.size()-1);//remove trailing ")"
3902        }
3903  
3904 <      double value = valueLookup(&inputCollection1->at(object1), &inputCollection2->at(object2), inputVariable, function);
3904 >      string stringValue = "";
3905 >      double value = valueLookup(&inputCollection1->at(object1), &inputCollection2->at(object2), inputVariable, function, stringValue);
3906        histo->Fill(value,scaleFactor);
3907  
3908      }
# Line 3198 | Line 3918 | void OSUAnalysis::fill2DHistogram(TH2* h
3918  
3919      if(!plotAllObjectsInPassingEvents_ && !flags.at(object)) continue;
3920  
3921 +    string stringValue = "";
3922      string currentString = parameters.inputVariables.at(0);
3923      string inputVariable = "";
3924      string function = "";
3925 <    if(currentString.find("(")==std::string::npos){
3925 >    if(currentString.find("(")==string::npos){
3926        inputVariable = currentString;// variable to cut on
3927      }
3928      else{
# Line 3209 | Line 3930 | void OSUAnalysis::fill2DHistogram(TH2* h
3930        inputVariable = currentString.substr(currentString.find("(")+1);//get rest of string
3931        inputVariable = inputVariable.substr(0,inputVariable.size()-1);//remove trailing ")"
3932      }
3933 <    double valueX = valueLookup(&inputCollection->at(object), inputVariable, function);
3933 >    double valueX = valueLookup(&inputCollection->at(object), inputVariable, function, stringValue);
3934  
3935      currentString = parameters.inputVariables.at(1);
3936      inputVariable = "";
3937      function = "";
3938 <    if(currentString.find("(")==std::string::npos){
3938 >    if(currentString.find("(")==string::npos){
3939        inputVariable = currentString;// variable to cut on
3940      }
3941      else{
# Line 3223 | Line 3944 | void OSUAnalysis::fill2DHistogram(TH2* h
3944        inputVariable = inputVariable.substr(0,inputVariable.size()-1);//remove trailing ")"
3945      }
3946  
3947 <    double valueY = valueLookup(&inputCollection->at(object), inputVariable, function);
3947 >    double valueY = valueLookup(&inputCollection->at(object), inputVariable, function, stringValue);
3948  
3949      histo->Fill(valueX,valueY,scaleFactor);
3950  
# Line 3250 | Line 3971 | void OSUAnalysis::fill2DHistogram(TH2* h
3971        if(!plotAllObjectsInPassingEvents_ && !flags2.at(object2)) continue;
3972        if(!plotAllObjectsInPassingEvents_ && !pairFlags.at(pairCounter)) continue;
3973  
3974 +      string stringValue = "";
3975        string currentString = parameters.inputVariables.at(0);
3976        string inputVariable = "";
3977        string function = "";
3978 <      if(currentString.find("(")==std::string::npos){
3978 >      if(currentString.find("(")==string::npos){
3979          inputVariable = currentString;// variable to cut on
3980        }
3981        else{
# Line 3261 | Line 3983 | void OSUAnalysis::fill2DHistogram(TH2* h
3983          inputVariable = currentString.substr(currentString.find("(")+1);//get rest of string
3984          inputVariable = inputVariable.substr(0,inputVariable.size()-1);//remove trailing ")"
3985        }
3986 <      double valueX = valueLookup(&inputCollection1->at(object1), &inputCollection2->at(object2), inputVariable, function);
3986 >      double valueX = valueLookup(&inputCollection1->at(object1), &inputCollection2->at(object2), inputVariable, function, stringValue);
3987  
3988        currentString = parameters.inputVariables.at(1);
3989        inputVariable = "";
3990        function = "";
3991 <      if(currentString.find("(")==std::string::npos){
3991 >      if(currentString.find("(")==string::npos){
3992          inputVariable = currentString;// variable to cut on
3993        }
3994        else{
# Line 3274 | Line 3996 | void OSUAnalysis::fill2DHistogram(TH2* h
3996          inputVariable = currentString.substr(currentString.find("(")+1);//get rest of string
3997          inputVariable = inputVariable.substr(0,inputVariable.size()-1);//remove trailing ")"
3998        }
3999 <      double valueY = valueLookup(&inputCollection1->at(object1), &inputCollection2->at(object2), inputVariable, function);
3999 >      double valueY = valueLookup(&inputCollection1->at(object1), &inputCollection2->at(object2), inputVariable, function, stringValue);
4000  
4001  
4002        histo->Fill(valueX,valueY,scaleFactor);
# Line 3295 | Line 4017 | int OSUAnalysis::getGenMatchedParticleIn
4017  
4018      double currentDeltaR = deltaR(object->eta,object->phi,mcparticle->eta,mcparticle->phi);
4019      if(currentDeltaR > 0.05) continue;
4020 <    //     cout << std::setprecision(3) << std::setw(20)
4020 >    //     cout << setprecision(3) << setw(20)
4021      //          << "\tcurrentParticle:  eta = " << mcparticles->at(mcparticle - mcparticles->begin()).eta
4022 <    //          << std::setw(20)
4022 >    //          << setw(20)
4023      //          << "\tphi = " << mcparticles->at(mcparticle - mcparticles->begin()).phi
4024 <    //          << std::setw(20)
4024 >    //          << setw(20)
4025      //          << "\tdeltaR = " << currentDeltaR
4026 <    //          << std::setprecision(1)
4027 <    //          << std::setw(20)
4026 >    //          << setprecision(1)
4027 >    //          << setw(20)
4028      //          << "\tid = " << mcparticles->at(mcparticle - mcparticles->begin()).id
4029 <    //          << std::setw(20)
4029 >    //          << setw(20)
4030      //          << "\tmotherId = " << mcparticles->at(mcparticle - mcparticles->begin()).motherId
4031 <    //          << std::setw(20)
4031 >    //          << setw(20)
4032      //          << "\tstatus = " << mcparticles->at(mcparticle - mcparticles->begin()).status<< endl;
4033      if(currentDeltaR < bestMatchDeltaR && mcparticles->at(mcparticle - mcparticles->begin()).id != mcparticles->at(mcparticle - mcparticles->begin()).motherId){
4034        bestMatchIndex = mcparticle - mcparticles->begin();
# Line 3369 | Line 4091 | int OSUAnalysis::findTauMotherIndex(cons
4091   // 20        strange baryon
4092   // 21        charm baryon
4093   // 22        bottom baryon
4094 < // 23        other
4094 > // 23        QCD string
4095 > // 24        other
4096  
4097   int OSUAnalysis::getPdgIdBinValue(int pdgId){
4098  
# Line 3393 | Line 4116 | int OSUAnalysis::getPdgIdBinValue(int pd
4116    else if(absPdgId > 3000 && absPdgId < 4000  ) binValue = 20;
4117    else if(absPdgId > 4000 && absPdgId < 5000  ) binValue = 21;
4118    else if(absPdgId > 5000 && absPdgId < 6000  ) binValue = 22;
4119 +  else if(absPdgId == 92  ) binValue = 23;
4120  
4121 <  else binValue = 23;
4121 >  else binValue = 24;
4122  
4123    return binValue;
4124  
# Line 3404 | Line 4128 | const BNprimaryvertex *
4128   OSUAnalysis::chosenVertex ()
4129   {
4130    const BNprimaryvertex *chosenVertex = 0;
4131 <  if(std::find(objectsToCut.begin(), objectsToCut.end(), "primaryvertexs") != objectsToCut.end()) {
4132 <    vector<bool> vertexFlags = cumulativeFlags.at("primaryvertexs").back().size() ? cumulativeFlags.at("primaryvertexs").back() :
4133 <      cumulativeFlags.at("primaryvertexs").at(cumulativeFlags.at("primaryvertexs").size() - 2);
4131 >  if(cumulativeFlags.find ("primaryvertexs") != cumulativeFlags.end ()){
4132 >    vector<bool> vertexFlags;
4133 >    for (int i = cumulativeFlags.at("primaryvertexs").size() - 1; i >= 0; i--){
4134 >      if (cumulativeFlags.at("primaryvertexs").at(i).size()){
4135 >        vertexFlags = cumulativeFlags.at("primaryvertexs").at(i);
4136 >        break;
4137 >      }
4138 >    }
4139      for (uint vertexIndex = 0; vertexIndex != vertexFlags.size(); vertexIndex++){
4140        if(!vertexFlags.at(vertexIndex)) continue;
4141        chosenVertex = & primaryvertexs->at(vertexIndex);
4142        break;
4143      }
4144    }
4145 <  else {
4146 <    chosenVertex = &primaryvertexs->at(0);
3418 <  }
4145 >  else if (find (objectsToGet.begin (), objectsToGet.end (), "primaryvertexs") != objectsToGet.end ())
4146 >    chosenVertex = & primaryvertexs->at (0);
4147  
4148    return chosenVertex;
4149   }
# Line 3424 | Line 4152 | const BNmet *
4152   OSUAnalysis::chosenMET ()
4153   {
4154    const BNmet *chosenMET = 0;
4155 <  if(std::find(objectsToCut.begin(), objectsToCut.end(), "mets") != objectsToCut.end()) {
4156 <    vector<bool> metFlags = cumulativeFlags.at("mets").back().size() ? cumulativeFlags.at("mets").back() :
4157 <      cumulativeFlags.at("mets").at(cumulativeFlags.at("mets").size() - 2);
4155 >  if(cumulativeFlags.find ("mets") != cumulativeFlags.end ()){
4156 >    vector<bool> metFlags;
4157 >    for (int i = cumulativeFlags.at("mets").size() - 1; i >= 0; i--){
4158 >      if (cumulativeFlags.at("mets").at(i).size()){
4159 >        metFlags = cumulativeFlags.at("mets").at(i);
4160 >        break;
4161 >      }
4162 >    }
4163      for (uint metIndex = 0; metIndex != metFlags.size(); metIndex++){
4164        if(!metFlags.at(metIndex)) continue;
4165        chosenMET = & mets->at(metIndex);
4166        break;
4167      }
4168    }
4169 <  else {
4170 <    chosenMET = &mets->at(0);
3438 <  }
4169 >  else if (find (objectsToGet.begin (), objectsToGet.end (), "mets") != objectsToGet.end ())
4170 >    chosenMET = & mets->at (0);
4171  
4172    return chosenMET;
4173   }
# Line 3444 | Line 4176 | const BNelectron *
4176   OSUAnalysis::chosenElectron ()
4177   {
4178    const BNelectron *chosenElectron = 0;
4179 <  if(std::find(objectsToCut.begin(), objectsToCut.end(), "electrons") != objectsToCut.end()) {
4180 <    vector<bool> electronFlags = cumulativeFlags.at("electrons").back().size() ? cumulativeFlags.at("electrons").back() :
4181 <      cumulativeFlags.at("electrons").at(cumulativeFlags.at("electrons").size() - 2);
4179 >  if(cumulativeFlags.find ("electrons") != cumulativeFlags.end ()){
4180 >    vector<bool> electronFlags;
4181 >    for (int i = cumulativeFlags.at("electrons").size() - 1; i >= 0; i--){
4182 >      if (cumulativeFlags.at("electrons").at(i).size()){
4183 >        electronFlags = cumulativeFlags.at("electrons").at(i);
4184 >        break;
4185 >      }
4186 >    }
4187      for (uint electronIndex = 0; electronIndex != electronFlags.size(); electronIndex++){
4188        if(!electronFlags.at(electronIndex)) continue;
4189        chosenElectron = & electrons->at(electronIndex);
4190        break;
4191      }
4192    }
4193 <  else {
4194 <    chosenElectron = &electrons->at(0);
3458 <  }
4193 >  else if (find (objectsToGet.begin (), objectsToGet.end (), "electrons") != objectsToGet.end ())
4194 >    chosenElectron = & electrons->at (0);
4195  
4196    return chosenElectron;
4197   }
# Line 3464 | Line 4200 | const BNmuon *
4200   OSUAnalysis::chosenMuon ()
4201   {
4202    const BNmuon *chosenMuon = 0;
4203 <  if(std::find(objectsToCut.begin(), objectsToCut.end(), "muons") != objectsToCut.end()) {
4204 <    vector<bool> muonFlags = cumulativeFlags.at("muons").back().size() ? cumulativeFlags.at("muons").back() :
4205 <      cumulativeFlags.at("muons").at(cumulativeFlags.at("muons").size() - 2);
4203 >  if(cumulativeFlags.find ("muons") != cumulativeFlags.end ()){
4204 >    vector<bool> muonFlags;
4205 >    for (int i = cumulativeFlags.at("muons").size() - 1; i >= 0; i--){
4206 >      if (cumulativeFlags.at("muons").at(i).size()){
4207 >        muonFlags = cumulativeFlags.at("muons").at(i);
4208 >        break;
4209 >      }
4210 >    }
4211      for (uint muonIndex = 0; muonIndex != muonFlags.size(); muonIndex++){
4212        if(!muonFlags.at(muonIndex)) continue;
4213        chosenMuon = & muons->at(muonIndex);
4214        break;
4215      }
4216    }
4217 <  else {
4218 <    chosenMuon = &muons->at(0);
3478 <  }
4217 >  else if (find (objectsToGet.begin (), objectsToGet.end (), "muons") != objectsToGet.end ())
4218 >    chosenMuon = & muons->at (0);
4219  
4220    return chosenMuon;
4221   }
4222  
3483 –
4223   DEFINE_FWK_MODULE(OSUAnalysis);

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