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Comparing UserCode/OSUT3Analysis/AnaTools/plugins/OSUAnalysis.cc (file contents):
Revision 1.49 by wulsin, Wed Apr 17 15:39:43 2013 UTC vs.
Revision 1.88 by jbrinson, Mon Jun 24 15:52:58 2013 UTC

# Line 17 | Line 17 | OSUAnalysis::OSUAnalysis (const edm::Par
17    photons_ (cfg.getParameter<edm::InputTag> ("photons")),
18    superclusters_ (cfg.getParameter<edm::InputTag> ("superclusters")),
19    triggers_ (cfg.getParameter<edm::InputTag> ("triggers")),
20 <  puFile_ (cfg.getParameter<std::string> ("puFile")),
21 <  deadEcalFile_ (cfg.getParameter<std::string> ("deadEcalFile")),
22 <  muonSFFile_ (cfg.getParameter<std::string> ("muonSFFile")),
23 <  dataPU_ (cfg.getParameter<std::string> ("dataPU")),
24 <  electronSFID_ (cfg.getParameter<std::string> ("electronSFID")),
25 <  muonSF_ (cfg.getParameter<std::string> ("muonSF")),
26 <  dataset_ (cfg.getParameter<std::string> ("dataset")),
27 <  datasetType_ (cfg.getParameter<std::string> ("datasetType")),
20 >  trigobjs_ (cfg.getParameter<edm::InputTag> ("trigobjs")),
21 >  puFile_ (cfg.getParameter<string> ("puFile")),
22 >  deadEcalFile_ (cfg.getParameter<string> ("deadEcalFile")),
23 >  muonSFFile_ (cfg.getParameter<string> ("muonSFFile")),
24 >  dataPU_ (cfg.getParameter<string> ("dataPU")),
25 >  electronSFID_ (cfg.getParameter<string> ("electronSFID")),
26 >  muonSF_ (cfg.getParameter<string> ("muonSF")),
27 >  dataset_ (cfg.getParameter<string> ("dataset")),
28 >  datasetType_ (cfg.getParameter<string> ("datasetType")),
29    channels_  (cfg.getParameter<vector<edm::ParameterSet> >("channels")),
30    histogramSets_ (cfg.getParameter<vector<edm::ParameterSet> >("histogramSets")),
31 +  useEDMFormat_   (cfg.getParameter<bool>("useEDMFormat")),
32 +  treeBranchSets_   (cfg.getParameter<vector<edm::ParameterSet> >("treeBranchSets")),
33    plotAllObjectsInPassingEvents_ (cfg.getParameter<bool> ("plotAllObjectsInPassingEvents")),
34    doPileupReweighting_ (cfg.getParameter<bool> ("doPileupReweighting")),
35 <  printEventInfo_ (cfg.getParameter<bool> ("printEventInfo")),
35 >  applyLeptonSF_ (cfg.getParameter<bool> ("applyLeptonSF")),
36 >  applyBtagSF_ (cfg.getParameter<bool> ("applyBtagSF")),
37 >  minBtag_ (cfg.getParameter<int> ("minBtag")),
38 >  maxBtag_ (cfg.getParameter<int> ("maxBtag")),
39 >  printEventInfo_      (cfg.getParameter<bool> ("printEventInfo")),
40 >  printAllTriggers_    (cfg.getParameter<bool> ("printAllTriggers")),
41    useTrackCaloRhoCorr_ (cfg.getParameter<bool> ("useTrackCaloRhoCorr")),
42 <  stopCTau_ (cfg.getParameter<vector<double> > ("stopCTau"))
43 <
44 < {
42 >  stopCTau_ (cfg.getParameter<vector<double> > ("stopCTau")),
43 >  GetPlotsAfterEachCut_ (cfg.getParameter<bool> ("GetPlotsAfterEachCut"))
44 > {
45  
46    TH1::SetDefaultSumw2 ();
47  
48    //create pile-up reweighting object, if necessary
49    if(datasetType_ != "data") {
50      if(doPileupReweighting_) puWeight_ = new PUWeight (puFile_, dataPU_, dataset_);
51 <    //    muonSFWeight_ = new MuonSFWeight (muonSFFile_, muonSF_);
52 <    //    electronSFWeight_ = new ElectronSFWeight ("53X", electronSFID_);
51 >    if (applyLeptonSF_){
52 >      muonSFWeight_ = new MuonSFWeight (muonSFFile_, muonSF_);
53 >      electronSFWeight_ = new ElectronSFWeight ("53X", electronSFID_);
54 >    }
55 >    if (applyBtagSF_){
56 >      bTagSFWeight_ = new BtagSFWeight;
57 >    }
58    }
59 < #ifdef DISPLACED_SUSY
60 <  if (datasetType_ == "signalMC")
48 <    cTauWeight_ = new CTauWeight (stopCTau_.at (0), stopCTau_.at (1), stops_);
49 < #endif
59 >  if (datasetType_ == "signalMC" && regex_match (dataset_, regex ("stop.*to.*_.*mm.*")))
60 >    stopCTauWeight_ = new StopCTauWeight (stopCTau_.at (0), stopCTau_.at (1), stops_);
61  
62  
63    // Construct Cutflow Objects. These store the results of cut decisions and
64    // handle filling cut flow histograms.
65    masterCutFlow_ = new CutFlow (fs_);
55 –  std::vector<TFileDirectory> directories;
66  
67    //always get vertex collection so we can assign the primary vertex in the event
68    objectsToGet.push_back("primaryvertexs");
59 –
60 –  //always make the plot of number of primary vertices (to check pile-up reweighting)
69    objectsToPlot.push_back("primaryvertexs");
70 +  objectsToCut.push_back("primaryvertexs");
71 +
72  
73    //always get the MC particles to do GEN-matching
74    objectsToGet.push_back("mcparticles");
# Line 66 | Line 76 | OSUAnalysis::OSUAnalysis (const edm::Par
76    //always get the event collection to do pile-up reweighting
77    objectsToGet.push_back("events");
78  
79 +
80 +  // Parse the tree variable definitions.
81 +  for (uint iBranchSet = 0; !useEDMFormat_ && iBranchSet<treeBranchSets_.size(); iBranchSet++) {
82 +    string tempInputCollection = treeBranchSets_.at(iBranchSet).getParameter<string> ("inputCollection");
83 +    if(tempInputCollection.find("pairs")!=string::npos) { cout << "Warning:  tree filling is not configured for pairs of objects, so will not work for collection: " << tempInputCollection << endl; }
84 +    objectsToGet.push_back(tempInputCollection);
85 +    objectsToCut.push_back(tempInputCollection);
86 +
87 +    vector<string> branchList(treeBranchSets_.at(iBranchSet).getParameter<vector<string> >("branches"));
88 +
89 +    for (uint iBranch = 0; iBranch<branchList.size(); iBranch++) {
90 +      BranchSpecs br;
91 +      br.inputCollection = tempInputCollection;
92 +      br.inputVariable = branchList.at(iBranch);
93 +      TString newName = TString(br.inputCollection) + "_" + TString(br.inputVariable);
94 +      br.name = string(newName.Data());
95 +      treeBranches_.push_back(br);
96 +    }
97 +
98 +  } // end   for (uint iBranchSet = 0; iBranchSet<treeBranchSets_.size(); iBranchSet++)
99 +
100 +
101    //parse the histogram definitions
102    for(uint currentHistogramSet = 0; currentHistogramSet != histogramSets_.size(); currentHistogramSet++){
103  
104      string tempInputCollection = histogramSets_.at(currentHistogramSet).getParameter<string> ("inputCollection");
105      if(tempInputCollection == "muon-electron pairs") tempInputCollection = "electron-muon pairs";
106 +    if(tempInputCollection == "photon-muon pairs") tempInputCollection = "muon-photon pairs";
107 +    if(tempInputCollection == "photon-electron pairs") tempInputCollection = "electron-photon pairs";
108 +    if(tempInputCollection == "jet-electron pairs") tempInputCollection = "electron-jet pairs";
109 +    if(tempInputCollection == "jet-photon pairs") tempInputCollection = "photon-jet pairs";
110 +    if(tempInputCollection == "jet-muon pairs") tempInputCollection = "muon-jet pairs";
111      if(tempInputCollection == "event-track pairs")   tempInputCollection = "track-event pairs";
112      if(tempInputCollection == "secondary muon-muon pairs")   tempInputCollection = "muon-secondary muon pairs";
113 <    if(tempInputCollection.find("pairs")==std::string::npos){ //just a single object
114 <      if(tempInputCollection.find("secondary")!=std::string::npos){//secondary object
115 <        int spaceIndex = tempInputCollection.find(" ");
116 <        int secondWordLength = tempInputCollection.size() - spaceIndex;
117 <        objectsToGet.push_back(tempInputCollection.substr(spaceIndex+1,secondWordLength));
113 >    if(tempInputCollection == "secondary jet-muon pairs")   tempInputCollection = "muon-secondary jet pairs";
114 >    if(tempInputCollection == "secondary jet-electron pairs")   tempInputCollection = "electron-secondary jet pairs";
115 >    if(tempInputCollection == "secondary jet-photon pairs")   tempInputCollection = "photon-secondary jet pairs";
116 >    if(tempInputCollection == "secondary jet-jet pairs")   tempInputCollection = "jet-secondary jet pairs";
117 >    if(tempInputCollection == "secondary electron-electron pairs")   tempInputCollection = "electron-secondary electron pairs";
118 >    if(tempInputCollection == "trigobj-electron pairs")   tempInputCollection = "electron-trigobj pairs";
119 >    if(tempInputCollection == "trigobj-muon pairs")   tempInputCollection = "muon-trigobj pairs";
120 >    if(tempInputCollection.find("pairs")==string::npos){ //just a single object
121 >      if(tempInputCollection.find("secondary")!=string::npos){//secondary object
122 >        int spaceIndex = tempInputCollection.find(" ");
123 >        int secondWordLength = tempInputCollection.size() - spaceIndex;
124 >        objectsToGet.push_back(tempInputCollection.substr(spaceIndex+1,secondWordLength));
125        }
126        else{
127 <        objectsToGet.push_back(tempInputCollection);
127 >        objectsToGet.push_back(tempInputCollection);
128        }
129        objectsToPlot.push_back(tempInputCollection);
130        objectsToCut.push_back(tempInputCollection);
131 <    }
132 <    else{//pair of objects, need to add the pair and the individual objects to the lists of things to Get/Plot/Cut
89 <      string obj1;
131 >    } else { //pair of objects, need to add the pair and the individual objects to the lists of things to Get/Plot/Cut
132 >      string obj1;
133        string obj2;
134        getTwoObjs(tempInputCollection, obj1, obj2);
135 <      string obj2ToGet = getObjToGet(obj2);  
135 >      string obj2ToGet = getObjToGet(obj2);
136        objectsToCut.push_back(tempInputCollection);
137        objectsToCut.push_back(obj1);
138 <      objectsToCut.push_back(obj2);  
138 >      objectsToCut.push_back(obj2);
139        objectsToPlot.push_back(tempInputCollection);
140        objectsToPlot.push_back(obj1);
141 <      objectsToPlot.push_back(obj2);  
141 >      objectsToPlot.push_back(obj2);
142        objectsToGet.push_back(tempInputCollection);
143        objectsToGet.push_back(obj1);
144        objectsToGet.push_back(obj2ToGet);
145 +    } // end else
146 +
147  
103 –    }
148  
149      vector<edm::ParameterSet> histogramList_  (histogramSets_.at(currentHistogramSet).getParameter<vector<edm::ParameterSet> >("histograms"));
150  
151      for(uint currentHistogram = 0; currentHistogram != histogramList_.size(); currentHistogram++){
152  
153 +      vector<double> defaultValue;
154 +      defaultValue.push_back (-1.0);
155 +
156        histogram tempHistogram;
157        tempHistogram.inputCollection = tempInputCollection;
158        tempHistogram.name = histogramList_.at(currentHistogram).getParameter<string>("name");
159        tempHistogram.title = histogramList_.at(currentHistogram).getParameter<string>("title");
160 <      tempHistogram.bins = histogramList_.at(currentHistogram).getParameter<vector<double> >("bins");
160 >      tempHistogram.bins = histogramList_.at(currentHistogram).getUntrackedParameter<vector<double> >("bins", defaultValue);
161 >      tempHistogram.variableBinsX = histogramList_.at(currentHistogram).getUntrackedParameter<vector<double> >("variableBinsX", defaultValue);
162 >      tempHistogram.variableBinsY = histogramList_.at(currentHistogram).getUntrackedParameter<vector<double> >("variableBinsY", defaultValue);
163        tempHistogram.inputVariables = histogramList_.at(currentHistogram).getParameter<vector<string> >("inputVariables");
164  
165        histograms.push_back(tempHistogram);
166  
167      }
168 <  }
168 >  } //   for(uint currentHistogramSet = 0; currentHistogramSet != histogramSets_.size(); currentHistogramSet++)
169 >
170    //make unique vector of objects we need to plot (so we can book a histogram with the number of each object)
171    sort( objectsToPlot.begin(), objectsToPlot.end() );
172    objectsToPlot.erase( unique( objectsToPlot.begin(), objectsToPlot.end() ), objectsToPlot.end() );
# Line 127 | Line 177 | OSUAnalysis::OSUAnalysis (const edm::Par
177    for(uint currentObjectIndex = 0; currentObjectIndex != objectsToPlot.size(); currentObjectIndex++){
178  
179      string currentObject = objectsToPlot.at(currentObjectIndex);
180 <    if(currentObject != "muons" && currentObject != "secondary muons" && currentObject != "electrons" && currentObject != "taus" && currentObject != "tracks" && currentObject != "photons" && currentObject != "superclusters") continue;
180 >    if(currentObject != "muons" && currentObject != "secondary muons" && currentObject != "secondary electrons" && currentObject != "electrons" && currentObject != "taus" && currentObject != "tracks" && currentObject != "photons" && currentObject != "superclusters") continue;
181  
182      histogram tempIdHisto;
183      histogram tempMomIdHisto;
184      histogram tempGmaIdHisto;
185      histogram tempIdVsMomIdHisto;
186 +    histogram tempIdVsGmaIdHisto;
187  
188      tempIdHisto.inputCollection = currentObject;
189      tempMomIdHisto.inputCollection = currentObject;
190      tempGmaIdHisto.inputCollection = currentObject;
191      tempIdVsMomIdHisto.inputCollection = currentObject;
192 +    tempIdVsGmaIdHisto.inputCollection = currentObject;
193  
194      if(currentObject == "secondary muons") currentObject = "secondaryMuons";
195 +    if(currentObject == "secondary electrons") currentObject = "secondaryElectrons";
196  
197      currentObject = currentObject.substr(0, currentObject.size()-1);
198      tempIdHisto.name = currentObject+"GenMatchId";
199      tempMomIdHisto.name = currentObject+"GenMatchMotherId";
200      tempGmaIdHisto.name = currentObject+"GenMatchGrandmotherId";
201      tempIdVsMomIdHisto.name = currentObject+"GenMatchIdVsMotherId";
202 +    tempIdVsGmaIdHisto.name = currentObject+"GenMatchIdVsGrandmotherId";
203  
204      currentObject.at(0) = toupper(currentObject.at(0));
205      tempIdHisto.title = currentObject+" Gen-matched Particle";
206      tempMomIdHisto.title = currentObject+" Gen-matched Particle's Mother";
207      tempGmaIdHisto.title = currentObject+" Gen-matched Particle's Grandmother";
208      tempIdVsMomIdHisto.title = currentObject+" Gen-matched Particle's Mother vs. Particle;Particle;Mother";
209 +    tempIdVsGmaIdHisto.title = currentObject+" Gen-matched Particle's Grandmother vs. Particle;Particle;Grandmother";
210  
211 <    int maxNum = 24;
211 >
212 >    int maxNum = 25;
213      vector<double> binVector;
214      binVector.push_back(maxNum);
215      binVector.push_back(0);
# Line 171 | Line 227 | OSUAnalysis::OSUAnalysis (const edm::Par
227      tempIdVsMomIdHisto.bins = binVector;
228      tempIdVsMomIdHisto.inputVariables.push_back("genMatchedId");
229      tempIdVsMomIdHisto.inputVariables.push_back("genMatchedMotherIdReverse");
230 +    tempIdVsGmaIdHisto.bins = binVector;
231 +    tempIdVsGmaIdHisto.inputVariables.push_back("genMatchedId");
232 +    tempIdVsGmaIdHisto.inputVariables.push_back("genMatchedGrandmotherIdReverse");
233  
234      histograms.push_back(tempIdHisto);
235      histograms.push_back(tempMomIdHisto);
236      histograms.push_back(tempGmaIdHisto);
237      histograms.push_back(tempIdVsMomIdHisto);
238 +    histograms.push_back(tempIdVsGmaIdHisto);
239    }
240  
241  
# Line 191 | Line 251 | OSUAnalysis::OSUAnalysis (const edm::Par
251      //set triggers for this channel
252      vector<string> triggerNames;
253      triggerNames.clear();
254 +    vector<string> triggerToVetoNames;
255 +    triggerToVetoNames.clear();
256 +
257      tempChannel.triggers.clear();
258 +    tempChannel.triggersToVeto.clear();
259      if(channels_.at(currentChannel).exists("triggers")){
260        triggerNames   = channels_.at(currentChannel).getParameter<vector<string> >("triggers");
261        for(uint trigger = 0; trigger!= triggerNames.size(); trigger++)
262          tempChannel.triggers.push_back(triggerNames.at(trigger));
263        objectsToGet.push_back("triggers");
264      }
265 <
265 >    if(channels_.at(currentChannel).exists("triggersToVeto")){
266 >      triggerToVetoNames = channels_.at(currentChannel).getParameter<vector<string> >("triggersToVeto");
267 >      for(uint trigger = 0; trigger!= triggerToVetoNames.size(); trigger++)
268 >        tempChannel.triggersToVeto.push_back(triggerToVetoNames.at(trigger));
269 >      objectsToGet.push_back("triggers");
270 >    }
271  
272  
273  
274      //create cutFlow for this channel
275      cutFlows_.push_back (new CutFlow (fs_, channelName));
276 <
277 <    //book a directory in the output file with the name of the channel
278 <    TFileDirectory subDir = fs_->mkdir( channelName );
210 <    directories.push_back(subDir);
211 <
212 <    std::map<std::string, TH1D*> oneDhistoMap;
213 <    oneDHists_.push_back(oneDhistoMap);
214 <    std::map<std::string, TH2D*> twoDhistoMap;
215 <    twoDHists_.push_back(twoDhistoMap);
216 <
217 <
218 <
219 <    //book all histograms included in the configuration
220 <    for(uint currentHistogramIndex = 0; currentHistogramIndex != histograms.size(); currentHistogramIndex++){
221 <      histogram currentHistogram = histograms.at(currentHistogramIndex);
222 <      int numBinsElements = currentHistogram.bins.size();
223 <      int numInputVariables = currentHistogram.inputVariables.size();
224 <
225 <      if(numBinsElements != 3 && numBinsElements !=6) {
226 <        std::cout << "Error: Didn't find correct number of bin specifications for histogram named '" << currentHistogram.name << "'\n";
227 <        exit(0);
228 <      }
229 <      else if((numBinsElements == 3 && numInputVariables !=1) || (numBinsElements == 6 && numInputVariables!=2)){
230 <        std::cout << "Error: Didn't find correct number of input variables for histogram named '" << currentHistogram.name << "'\n";
231 <        exit(0);
232 <      }
233 <      else if(numBinsElements == 3){
234 <        oneDHists_.at(currentChannel)[currentHistogram.name] = directories.at(currentChannel).make<TH1D> (TString(currentHistogram.name),channelLabel+" channel: "+currentHistogram.title, currentHistogram.bins.at(0), currentHistogram.bins.at(1), currentHistogram.bins.at(2));
235 <      }
236 <      else if(numBinsElements == 6){
237 <        twoDHists_.at(currentChannel)[currentHistogram.name] = directories.at(currentChannel).make<TH2D> (TString(currentHistogram.name),channelLabel+" channel: "+currentHistogram.title, currentHistogram.bins.at(0), currentHistogram.bins.at(1), currentHistogram.bins.at(2),currentHistogram.bins.at(3),currentHistogram.bins.at(4),currentHistogram.bins.at(5));
238 <
239 <      }
240 <
241 <
242 <      if(currentHistogram.name.find("GenMatch")==std::string::npos) continue;
243 <
244 <      // bin      particle type
245 <      // ---      -------------
246 <      //  0        unmatched
247 <      //  1        u
248 <      //  2        d
249 <      //  3        s
250 <      //  4        c
251 <      //  5        b
252 <      //  6        t
253 <      //  7        e
254 <      //  8        mu
255 <      //  9        tau
256 <      // 10        nu
257 <      // 11        g
258 <      // 12        gamma
259 <      // 13        Z
260 <      // 14        W
261 <      // 15        light meson
262 <      // 16        K meson
263 <      // 17        D meson
264 <      // 18        B meson
265 <      // 19        light baryon
266 <      // 20        strange baryon
267 <      // 21        charm baryon
268 <      // 22        bottom baryon
269 <      // 23        other
270 <
271 <      vector<TString> labelArray;
272 <      labelArray.push_back("unmatched");
273 <      labelArray.push_back("u");
274 <      labelArray.push_back("d");
275 <      labelArray.push_back("s");
276 <      labelArray.push_back("c");
277 <      labelArray.push_back("b");
278 <      labelArray.push_back("t");
279 <      labelArray.push_back("e");
280 <      labelArray.push_back("#mu");
281 <      labelArray.push_back("#tau");
282 <      labelArray.push_back("#nu");
283 <      labelArray.push_back("g");
284 <      labelArray.push_back("#gamma");
285 <      labelArray.push_back("Z");
286 <      labelArray.push_back("W");
287 <      labelArray.push_back("light meson");
288 <      labelArray.push_back("K meson");
289 <      labelArray.push_back("D meson");
290 <      labelArray.push_back("B meson");
291 <      labelArray.push_back("light baryon");
292 <      labelArray.push_back("strange baryon");
293 <      labelArray.push_back("charm baryon");
294 <      labelArray.push_back("bottom baryon");
295 <      labelArray.push_back("other");
296 <
297 <      for(int bin = 0; bin !=currentHistogram.bins.at(0); bin++){
298 <        if(currentHistogram.name.find("GenMatchIdVsMotherId")==std::string::npos) {
299 <          oneDHists_.at(currentChannel)[currentHistogram.name]->GetXaxis()->SetBinLabel(bin+1,labelArray.at(bin));
300 <        }
301 <        else {
302 <          twoDHists_.at(currentChannel)[currentHistogram.name]->GetYaxis()->SetBinLabel(bin+1,labelArray.at(currentHistogram.bins.at(0)-bin-1));
303 <          twoDHists_.at(currentChannel)[currentHistogram.name]->GetXaxis()->SetBinLabel(bin+1,labelArray.at(bin));
304 <        }
305 <      }
306 <      if(currentHistogram.name.find("GenMatchIdVsMotherId")!=std::string::npos) {
307 <        twoDHists_.at(currentChannel)[currentHistogram.name]->GetXaxis()->CenterTitle();
308 <        twoDHists_.at(currentChannel)[currentHistogram.name]->GetYaxis()->CenterTitle();
309 <      }
310 <
311 <    }
312 <
313 <    // Book a histogram for the number of each object type to be plotted.  
314 <    // Name of objectToPlot here must match the name specified in OSUAnalysis::analyze().  
315 <    for (uint currentObjectIndex = 0; currentObjectIndex != objectsToPlot.size(); currentObjectIndex++){
316 <      string currentObject = objectsToPlot.at(currentObjectIndex);
317 <      int maxNum = 10;
318 <      if(currentObject == "mcparticles") maxNum = 50;
319 <      else if(currentObject == "primaryvertexs") maxNum = 50;
320 <
321 <      if(currentObject == "muon-muon pairs")                currentObject = "dimuonPairs";
322 <      else if(currentObject == "electron-electron pairs")   currentObject = "dielectronPairs";
323 <      else if(currentObject == "electron-muon pairs")       currentObject = "electronMuonPairs";
324 <      else if(currentObject == "track-event pairs")         currentObject = "trackEventPairs";
325 <      else if(currentObject == "electron-track pairs")      currentObject = "electronTrackPairs";        
326 <      else if(currentObject == "muon-track pairs")          currentObject = "muonTrackPairs";    
327 <      else if(currentObject == "muon-tau pairs")            currentObject = "muonTauPairs";      
328 <      else if(currentObject == "tau-tau pairs")             currentObject = "ditauPairs";
329 <      else if(currentObject == "tau-track pairs")           currentObject = "tauTrackPairs";
330 <      else if(currentObject == "muon-secondary muon pairs") currentObject = "muonSecondaryMuonPairs";
331 <      else if(currentObject == "secondary muons")           currentObject = "secondaryMuons";
332 <
333 <      currentObject.at(0) = toupper(currentObject.at(0));  
334 <      string histoName = "num" + currentObject;
335 <
336 <      if(histoName == "numPrimaryvertexs"){
337 <        string newHistoName = histoName + "BeforePileupCorrection";
338 <        oneDHists_.at(currentChannel)[newHistoName] = directories.at(currentChannel).make<TH1D> (TString(newHistoName),channelLabel+" channel: Number of Selected "+currentObject+" Before Pileup Correction; # "+currentObject, maxNum, 0, maxNum);
339 <        newHistoName = histoName + "AfterPileupCorrection";
340 <        oneDHists_.at(currentChannel)[newHistoName] = directories.at(currentChannel).make<TH1D> (TString(newHistoName),channelLabel+" channel: Number of Selected "+currentObject+ " After Pileup Correction; # "+currentObject, maxNum, 0, maxNum);
341 <      }
342 <      else
343 <        oneDHists_.at(currentChannel)[histoName] = directories.at(currentChannel).make<TH1D> (TString(histoName),channelLabel+" channel: Number of Selected "+currentObject+"; # "+currentObject, maxNum, 0, maxNum);
344 <    }
345 <
346 <
347 <
348 <
276 >    vector<TFileDirectory> directories; //vector of directories in the output file.
277 >    vector<TFileDirectory> treeDirectories; //vector of directories for trees in the output file.
278 >    vector<string> subSubDirNames;//subdirectories in each channel.
279      //get list of cuts for this channel
280      vector<edm::ParameterSet> cuts_  (channels_.at(currentChannel).getParameter<vector<edm::ParameterSet> >("cuts"));
281  
282 +
283      //loop over and parse all cuts
284      for(uint currentCut = 0; currentCut != cuts_.size(); currentCut++){
285        cut tempCut;
286        //store input collection for cut
287        string tempInputCollection = cuts_.at(currentCut).getParameter<string> ("inputCollection");
288        if(tempInputCollection == "muon-electron pairs") tempInputCollection = "electron-muon pairs";
289 +      if(tempInputCollection == "photon-electron pairs") tempInputCollection = "electron-photon pairs";
290 +      if(tempInputCollection == "photon-muon pairs") tempInputCollection = "muon-photon pairs";
291 +      if(tempInputCollection == "jet-electron pairs") tempInputCollection = "electron-jet pairs";
292 +      if(tempInputCollection == "jet-muon pairs") tempInputCollection = "muon-jet pairs";
293 +      if(tempInputCollection == "jet-photon pairs") tempInputCollection = "photon-jet pairs";
294        if(tempInputCollection == "event-track pairs")   tempInputCollection = "track-event pairs";
295        if(tempInputCollection == "secondary muon-muon pairs")   tempInputCollection = "muon-secondary muon pairs";
296 +      if(tempInputCollection == "secondary jet-jet pairs")   tempInputCollection = "jet-secondary jet pairs";
297 +      if(tempInputCollection == "secondary jet-muon pairs")   tempInputCollection = "muon-secondary jet pairs";
298 +      if(tempInputCollection == "secondary jet-photon pairs")   tempInputCollection = "photon-secondary jet pairs";
299 +      if(tempInputCollection == "secondary jet-electron pairs")   tempInputCollection = "electron-secondary jet pairs";
300 +      if(tempInputCollection == "secondary electron-electron pairs")   tempInputCollection = "electron-secondary electron pairs";
301 +      if(tempInputCollection == "trigobj-electron pairs")   tempInputCollection = "electron-trigobj pairs";
302 +      if(tempInputCollection == "trigobj-muon pairs")   tempInputCollection = "muon-trigobj pairs";
303        tempCut.inputCollection = tempInputCollection;
304 <      if(tempInputCollection.find("pairs")==std::string::npos){ //just a single object
305 <        if(tempInputCollection.find("secondary")!=std::string::npos){//secondary object
306 <          int spaceIndex = tempInputCollection.find(" ");
307 <          int secondWordLength = tempInputCollection.size() - spaceIndex;
308 <          objectsToGet.push_back(tempInputCollection.substr(spaceIndex+1,secondWordLength));
309 <        }
310 <        else{
311 <          objectsToGet.push_back(tempInputCollection);
312 <        }
313 <        objectsToCut.push_back(tempInputCollection);
304 >      if(tempInputCollection.find("pairs")==string::npos){ //just a single object
305 >        if(tempInputCollection.find("secondary")!=string::npos){//secondary object
306 >          int spaceIndex = tempInputCollection.find(" ");
307 >          int secondWordLength = tempInputCollection.size() - spaceIndex;
308 >          objectsToGet.push_back(tempInputCollection.substr(spaceIndex+1,secondWordLength));
309 >        }
310 >        else{
311 >          objectsToGet.push_back(tempInputCollection);
312 >        }
313 >        objectsToCut.push_back(tempInputCollection);
314        }
315        else{//pair of objects, need to add them both to objectsToGet
316 <        string obj1;
317 <        string obj2;
318 <        getTwoObjs(tempInputCollection, obj1, obj2);
319 <        string obj2ToGet = getObjToGet(obj2);  
316 >        string obj1;
317 >        string obj2;
318 >        getTwoObjs(tempInputCollection, obj1, obj2);
319 >        string obj2ToGet = getObjToGet(obj2);
320          objectsToCut.push_back(tempInputCollection);
321          objectsToCut.push_back(obj1);
322 <        objectsToCut.push_back(obj2);  
322 >        objectsToCut.push_back(obj2);
323          objectsToGet.push_back(tempInputCollection);
324          objectsToGet.push_back(obj1);
325          objectsToGet.push_back(obj2ToGet);
# Line 387 | Line 330 | OSUAnalysis::OSUAnalysis (const edm::Par
330  
331        //split cut string into parts and store them
332        string cutString = cuts_.at(currentCut).getParameter<string> ("cutString");
333 <      std::vector<string> cutStringVector = splitString(cutString);
333 >      vector<string> cutStringVector = splitString(cutString);
334        if(cutStringVector.size()!=3 && cutStringVector.size() % 4 !=3){
335 <        std::cout << "Error: Didn't find the expected number elements in the following cut string: '" << cutString << "'\n";
335 >        cout << "Error: Didn't find the expected number elements in the following cut string: '" << cutString << "'\n";
336          exit(0);
337        }
338        tempCut.numSubcuts = (cutStringVector.size()+1)/4;
339        for(int subcutIndex = 0; subcutIndex != tempCut.numSubcuts; subcutIndex++){//loop over all the pieces of the cut combined using &,|
340          int indexOffset = 4 * subcutIndex;
341          string currentVariableString = cutStringVector.at(indexOffset);
342 <        if(currentVariableString.find("(")==std::string::npos){
342 >        if(currentVariableString.find("(")==string::npos){
343            tempCut.functions.push_back("");//no function was specified
344            tempCut.variables.push_back(currentVariableString);// variable to cut on
345          }
# Line 407 | Line 350 | OSUAnalysis::OSUAnalysis (const edm::Par
350          }
351          tempCut.comparativeOperators.push_back(cutStringVector.at(indexOffset+1));// comparison to make
352          tempCut.cutValues.push_back(atof(cutStringVector.at(indexOffset+2).c_str()));// threshold value to pass cut
353 +        tempCut.cutStringValues.push_back(cutStringVector.at(indexOffset+2));// string value to pass cut
354          if(subcutIndex != 0) tempCut.logicalOperators.push_back(cutStringVector.at(indexOffset-1)); // logical comparison (and, or)
355        }
356  
357        //get number of objects required to pass cut for event to pass
358        string numberRequiredString = cuts_.at(currentCut).getParameter<string> ("numberRequired");
359 <      std::vector<string> numberRequiredVector = splitString(numberRequiredString);
359 >      vector<string> numberRequiredVector = splitString(numberRequiredString);
360        if(numberRequiredVector.size()!=2){
361 <        std::cout << "Error: Didn't find two elements in the following number requirement string: '" << numberRequiredString << "'\n";
361 >        cout << "Error: Didn't find two elements in the following number requirement string: '" << numberRequiredString << "'\n";
362          exit(0);
363        }
364  
# Line 422 | Line 366 | OSUAnalysis::OSUAnalysis (const edm::Par
366        tempCut.numberRequired = numberRequiredInt;// number of objects required to pass the cut
367        tempCut.eventComparativeOperator = numberRequiredVector.at(0);// comparison to make
368  
369 <
369 >      //Set up vectors to store the directories and subDirectories for each channel.
370 >      string subSubDirName;
371        string tempCutName;
372        if(cuts_.at(currentCut).exists("alias")){
373          tempCutName = cuts_.at(currentCut).getParameter<string> ("alias");
374 +        subSubDirName = "After " + tempCutName + " Cut Applied";
375        }
376        else{
377          //construct string for cutflow table
# Line 433 | Line 379 | OSUAnalysis::OSUAnalysis (const edm::Par
379          string collectionString = plural ? tempInputCollection : tempInputCollection.substr(0, tempInputCollection.size()-1);
380          string cutName =  numberRequiredString + " " + collectionString + " with " + cutString;
381          tempCutName = cutName;
382 +        subSubDirName = "After " + numberRequiredString + " " + collectionString + " with " + cutString + " Cut Applied";
383 +      }
384 +
385 +      tempCut.isVeto = false;
386 +      if(cuts_.at(currentCut).exists("isVeto")){
387 +        bool isVeto = cuts_.at(currentCut).getParameter<bool> ("isVeto");
388 +        if (isVeto == true) tempCut.isVeto = true;
389        }
390 +      subSubDirNames.push_back(subSubDirName);
391        tempCut.name = tempCutName;
392  
393        tempChannel.cuts.push_back(tempCut);
# Line 441 | Line 395 | OSUAnalysis::OSUAnalysis (const edm::Par
395  
396      }//end loop over cuts
397  
398 +    vector<map<string, TH1D*>> oneDHistsTmp;
399 +    vector<map<string, TH2D*>> twoDHistsTmp;
400 +    //book a directory in the output file with the name of the channel
401 +    TFileDirectory subDir = fs_->mkdir( channelName );
402 +    //loop over the cuts to set up subdirectory for each cut if GetPlotsAfterEachCut_ is true.
403 +    if(GetPlotsAfterEachCut_){
404 +      for( uint currentDir=0; currentDir != subSubDirNames.size(); currentDir++){
405 +        TFileDirectory subSubDir = subDir.mkdir( subSubDirNames[currentDir] );
406 +        directories.push_back(subSubDir);
407 +        map<string, TH1D*> oneDhistoMap;
408 +        oneDHistsTmp.push_back(oneDhistoMap);
409 +        map<string, TH2D*> twoDhistoMap;
410 +        twoDHistsTmp.push_back(twoDhistoMap);
411 +      }
412 +      treeDirectories.push_back(subDir);
413 +      oneDHists_.push_back(oneDHistsTmp);
414 +      twoDHists_.push_back(twoDHistsTmp);
415 +    }
416 +    //only set up directories with names of the channels if GetPlotsAfterEachCut_ is false.
417 +    else{
418 +      map<string, TH1D*> oneDhistoMap;
419 +      oneDHistsTmp.push_back(oneDhistoMap);
420 +      map<string, TH2D*> twoDhistoMap;
421 +      twoDHistsTmp.push_back(twoDhistoMap);
422 +      oneDHists_.push_back(oneDHistsTmp);
423 +      twoDHists_.push_back(twoDHistsTmp);
424 +      directories.push_back(subDir);
425 +      treeDirectories.push_back(subDir);
426 +
427 +    }
428 +
429 +    for(uint currentDir = 0; !useEDMFormat_ && currentDir != treeDirectories.size(); currentDir++){
430 +      TTree* newTree = treeDirectories.at(currentDir).make<TTree> (TString("BNTree_"+channelLabel), TString("BNTree_"+channelLabel));
431 +      BNTrees_.push_back(newTree);
432 +      for (uint iBranch = 0; iBranch < treeBranches_.size(); iBranch++){
433 +        BranchSpecs currentVar = treeBranches_.at(iBranch);
434 +        vector<float> newVec;
435 +        BNTreeBranchVals_[currentVar.name] = newVec;
436 +        BNTrees_.back()->Branch(TString(currentVar.name), &BNTreeBranchVals_.at(currentVar.name));
437 +      } // end for (uint iBranch = 0; iBranch < treeBranches_.size(); iBranch++)
438 +    }
439 +
440 +    //book all histograms included in the configuration
441 +    for(uint currentDir = 0; currentDir != directories.size(); currentDir++){//loop over all the directories.
442 +
443 +      for(uint currentHistogramIndex = 0; currentHistogramIndex != histograms.size(); currentHistogramIndex++){
444 +
445 +        histogram currentHistogram = histograms.at(currentHistogramIndex);
446 +        int numBinsElements = currentHistogram.bins.size();
447 +        int numInputVariables = currentHistogram.inputVariables.size();
448 +        int numBinEdgesX = currentHistogram.variableBinsX.size();
449 +        int numBinEdgesY = currentHistogram.variableBinsY.size();
450 +
451 +        if(numBinsElements == 1){
452 +          if(numBinEdgesX > 1){
453 +            if(numBinEdgesY > 1)
454 +              numBinsElements = 6;
455 +            else
456 +              numBinsElements = 3;
457 +          }
458 +        }
459 +        if(numBinsElements != 3 && numBinsElements !=6){
460 +          cout << "Error: Didn't find correct number of bin specifications for histogram named '" << currentHistogram.name << "'\n";
461 +          exit(0);
462 +        }
463 +        else if((numBinsElements == 3 && numInputVariables !=1) || (numBinsElements == 6 && numInputVariables!=2)){
464 +          cout << "Error: Didn't find correct number of input variables for histogram named '" << currentHistogram.name << "'\n";
465 +          exit(0);
466 +        }
467 +        else if(numBinsElements == 3){
468 +          if (currentHistogram.bins.size () == 3)
469 +            oneDHists_.at(currentChannel).at(currentDir)[currentHistogram.name] = directories.at(currentDir).make<TH1D> (TString(currentHistogram.name),channelLabel+" channel: "+currentHistogram.title, currentHistogram.bins.at(0), currentHistogram.bins.at(1), currentHistogram.bins.at(2));
470 +          else
471 +            {
472 +              oneDHists_.at(currentChannel).at(currentDir)[currentHistogram.name] = directories.at(currentDir).make<TH1D> (TString(currentHistogram.name),channelLabel+" channel: "+currentHistogram.title, numBinEdgesX - 1, currentHistogram.variableBinsX.data ());
473 +            }
474 +        }
475 +        else if(numBinsElements == 6){
476 +          if (currentHistogram.bins.size () == 6)
477 +            twoDHists_.at(currentChannel).at(currentDir)[currentHistogram.name] = directories.at(currentDir).make<TH2D> (TString(currentHistogram.name),channelLabel+" channel: "+currentHistogram.title, currentHistogram.bins.at(0), currentHistogram.bins.at(1), currentHistogram.bins.at(2),currentHistogram.bins.at(3),currentHistogram.bins.at(4),currentHistogram.bins.at(5));
478 +          else
479 +            twoDHists_.at(currentChannel).at(currentDir)[currentHistogram.name] = directories.at(currentDir).make<TH2D> (TString(currentHistogram.name),channelLabel+" channel: "+currentHistogram.title, numBinEdgesX - 1, currentHistogram.variableBinsX.data (), numBinEdgesY - 1, currentHistogram.variableBinsY.data ());
480 +        }
481 +
482 +
483 +        if(currentHistogram.name.find("GenMatch")==string::npos) continue;
484 +
485 +        // bin      particle type
486 +        // ---      -------------
487 +        //  0        unmatched
488 +        //  1        u
489 +        //  2        d
490 +        //  3        s
491 +        //  4        c
492 +        //  5        b
493 +        //  6        t
494 +        //  7        e
495 +        //  8        mu
496 +        //  9        tau
497 +        // 10        nu
498 +        // 11        g
499 +        // 12        gamma
500 +        // 13        Z
501 +        // 14        W
502 +        // 15        light meson
503 +        // 16        K meson
504 +        // 17        D meson
505 +        // 18        B meson
506 +        // 19        light baryon
507 +        // 20        strange baryon
508 +        // 21        charm baryon
509 +        // 22        bottom baryon
510 +        // 23        QCD string
511 +        // 24        other
512 +
513 +        vector<TString> labelArray;
514 +        labelArray.push_back("unmatched");
515 +        labelArray.push_back("u");
516 +        labelArray.push_back("d");
517 +        labelArray.push_back("s");
518 +        labelArray.push_back("c");
519 +        labelArray.push_back("b");
520 +        labelArray.push_back("t");
521 +        labelArray.push_back("e");
522 +        labelArray.push_back("#mu");
523 +        labelArray.push_back("#tau");
524 +        labelArray.push_back("#nu");
525 +        labelArray.push_back("g");
526 +        labelArray.push_back("#gamma");
527 +        labelArray.push_back("Z");
528 +        labelArray.push_back("W");
529 +        labelArray.push_back("light meson");
530 +        labelArray.push_back("K meson");
531 +        labelArray.push_back("D meson");
532 +        labelArray.push_back("B meson");
533 +        labelArray.push_back("light baryon");
534 +        labelArray.push_back("strange baryon");
535 +        labelArray.push_back("charm baryon");
536 +        labelArray.push_back("bottom baryon");
537 +        labelArray.push_back("QCD string");
538 +        labelArray.push_back("other");
539 +
540 +        for(int bin = 0; bin !=currentHistogram.bins.at(0); bin++){
541 +          if(currentHistogram.name.find("GenMatchIdVsMotherId")==string::npos && currentHistogram.name.find("GenMatchIdVsGrandmotherId")==string::npos) {
542 +            oneDHists_.at(currentChannel).at(currentDir)[currentHistogram.name]->GetXaxis()->SetBinLabel(bin+1,labelArray.at(bin));
543 +          }
544 +          else {
545 +            twoDHists_.at(currentChannel).at(currentDir)[currentHistogram.name]->GetYaxis()->SetBinLabel(bin+1,labelArray.at(currentHistogram.bins.at(0)-bin-1));
546 +            twoDHists_.at(currentChannel).at(currentDir)[currentHistogram.name]->GetXaxis()->SetBinLabel(bin+1,labelArray.at(bin));
547 +          }
548 +        }
549 +        if(currentHistogram.name.find("GenMatchIdVsMotherId")!=string::npos || currentHistogram.name.find("GenMatchIdVsGrandmotherId")!=string::npos) {
550 +          twoDHists_.at(currentChannel).at(currentDir)[currentHistogram.name]->GetXaxis()->CenterTitle();
551 +          twoDHists_.at(currentChannel).at(currentDir)[currentHistogram.name]->GetYaxis()->CenterTitle();
552 +        }
553 +
554 +      }  // end      for(uint currentHistogramIndex = 0; currentHistogramIndex != histograms.size(); currentHistogramIndex++)
555 +
556 +
557 +      // Book a histogram for the number of each object type to be plotted.
558 +      // Name of objectToPlot here must match the name specified in OSUAnalysis::analyze().
559 +      for (uint currentObjectIndex = 0; currentObjectIndex != objectsToPlot.size(); currentObjectIndex++){
560 +        string currentObject = objectsToPlot.at(currentObjectIndex);
561 +        int maxNum = 10;
562 +        if(currentObject == "mcparticles") maxNum = 50;
563 +        else if(currentObject == "primaryvertexs") maxNum = 50;
564 +
565 +        if(currentObject == "muon-muon pairs")                currentObject = "dimuonPairs";
566 +        else if(currentObject == "electron-electron pairs")   currentObject = "dielectronPairs";
567 +        else if(currentObject == "electron-muon pairs")       currentObject = "electronMuonPairs";
568 +        else if(currentObject == "electron-photon pairs")       currentObject = "electronPhotonPairs";
569 +        else if(currentObject == "muon-photon pairs")       currentObject = "muonPhotonPairs";
570 +        else if(currentObject == "secondary jets")            currentObject = "secondaryJets";
571 +        else if(currentObject == "jet-jet pairs")             currentObject = "dijetPairs";
572 +        else if(currentObject == "jet-secondary jet pairs")   currentObject = "jetSecondaryJetPairs";
573 +        else if(currentObject == "electron-jet pairs")        currentObject = "electronJetPairs";
574 +        else if(currentObject == "muon-jet pairs")            currentObject = "muonJetPairs";
575 +        else if(currentObject == "photon-jet pairs")            currentObject = "photonJetPairs";
576 +        else if(currentObject == "muon-secondary jet pairs")  currentObject = "muonSecondaryJetPairs";
577 +        else if(currentObject == "photon-secondary jet pairs")  currentObject = "photonSecondaryJetPairs";
578 +        else if(currentObject == "electron-secondary jet pairs")  currentObject = "electronSecondaryJetPairs";
579 +        else if(currentObject == "track-event pairs")         currentObject = "trackEventPairs";
580 +        else if(currentObject == "electron-track pairs")      currentObject = "electronTrackPairs";
581 +        else if(currentObject == "muon-track pairs")          currentObject = "muonTrackPairs";
582 +        else if(currentObject == "muon-tau pairs")            currentObject = "muonTauPairs";
583 +        else if(currentObject == "tau-tau pairs")             currentObject = "ditauPairs";
584 +        else if(currentObject == "tau-track pairs")           currentObject = "tauTrackPairs";
585 +        else if(currentObject == "muon-secondary muon pairs") currentObject = "muonSecondaryMuonPairs";
586 +        else if(currentObject == "secondary muons")           currentObject = "secondaryMuons";
587 +        else if(currentObject == "electron-secondary electron pairs") currentObject = "electronSecondaryElectronPairs";
588 +        else if(currentObject == "secondary electrons")       currentObject = "secondaryElectrons";
589 +        else if(currentObject == "electron-trigobj pairs")    currentObject = "electronTrigobjPairs";
590 +        else if(currentObject == "muon-trigobj pairs")        currentObject = "muonTrigobjPairs";
591 +
592 +        currentObject.at(0) = toupper(currentObject.at(0));
593 +        string histoName = "num" + currentObject;
594 +
595 +        if(histoName == "numPrimaryvertexs"){
596 +          string newHistoName = histoName + "BeforePileupCorrection";
597 +          oneDHists_.at(currentChannel).at(currentDir)[newHistoName] = directories.at(currentDir).make<TH1D> (TString(newHistoName),channelLabel+" channel: Number of Selected "+currentObject+" Before Pileup Correction; # "+currentObject, maxNum, 0, maxNum);
598 +          newHistoName = histoName + "AfterPileupCorrection";
599 +          oneDHists_.at(currentChannel).at(currentDir)[newHistoName] = directories.at(currentDir).make<TH1D> (TString(newHistoName),channelLabel+" channel: Number of Selected "+currentObject+ " After Pileup Correction; # "+currentObject, maxNum, 0, maxNum);
600 +        }
601 +        else
602 +          oneDHists_.at(currentChannel).at(currentDir)[histoName] = directories.at(currentDir).make<TH1D> (TString(histoName),channelLabel+" channel: Number of Selected "+currentObject+"; # "+currentObject, maxNum, 0, maxNum);
603 +      }
604 +    }//end of loop over directories
605      channels.push_back(tempChannel);
606      tempChannel.cuts.clear();
446 –
607    }//end loop over channels
608  
609  
# Line 454 | Line 614 | OSUAnalysis::OSUAnalysis (const edm::Par
614    sort( objectsToCut.begin(), objectsToCut.end() );
615    objectsToCut.erase( unique( objectsToCut.begin(), objectsToCut.end() ), objectsToCut.end() );
616  
617 +  produces<map<string, bool> > ("channelDecisions");
618 +
619 + } // end constructor OSUAnalysis::OSUAnalysis()
620  
458 – }
621  
622   OSUAnalysis::~OSUAnalysis ()
623   {
624 +
625    // Destroying the CutFlow objects causes the cut flow numbers and time
626    // information to be printed to standard output.
627    for(uint currentChannel = 0; currentChannel != channels_.size(); currentChannel++){
# Line 467 | Line 630 | OSUAnalysis::~OSUAnalysis ()
630   }
631  
632   void
633 < OSUAnalysis::analyze (const edm::Event &event, const edm::EventSetup &setup)
633 > OSUAnalysis::produce (edm::Event &event, const edm::EventSetup &setup)
634   {
635 <
635 >  //cout << "**********************\n\n\n";
636    // Retrieve necessary collections from the event.
637  
638 <  if (std::find(objectsToGet.begin(), objectsToGet.end(), "triggers") != objectsToGet.end())
638 >  if (find(objectsToGet.begin(), objectsToGet.end(), "triggers") != objectsToGet.end())
639      event.getByLabel (triggers_, triggers);
640  
641 <  if (std::find(objectsToGet.begin(), objectsToGet.end(), "jets") != objectsToGet.end())
641 >  if (find(objectsToGet.begin(), objectsToGet.end(), "trigobjs") != objectsToGet.end())
642 >    event.getByLabel (trigobjs_, trigobjs);
643 >
644 >  if (find(objectsToGet.begin(), objectsToGet.end(), "jets") != objectsToGet.end())
645      event.getByLabel (jets_, jets);
646  
647 <  if (std::find(objectsToGet.begin(), objectsToGet.end(), "muons") != objectsToGet.end())
647 >  if (find(objectsToGet.begin(), objectsToGet.end(), "muons") != objectsToGet.end())
648      event.getByLabel (muons_, muons);
649  
650 <  if (std::find(objectsToGet.begin(), objectsToGet.end(), "electrons") != objectsToGet.end())
650 >  if (find(objectsToGet.begin(), objectsToGet.end(), "electrons") != objectsToGet.end())
651      event.getByLabel (electrons_, electrons);
652  
653 <  if (std::find(objectsToGet.begin(), objectsToGet.end(), "events") != objectsToGet.end())
653 >  if (find(objectsToGet.begin(), objectsToGet.end(), "events") != objectsToGet.end())
654      event.getByLabel (events_, events);
655  
656 <  if (std::find(objectsToGet.begin(), objectsToGet.end(), "taus") != objectsToGet.end())
656 >  if (find(objectsToGet.begin(), objectsToGet.end(), "taus") != objectsToGet.end())
657      event.getByLabel (taus_, taus);
658  
659 <  if (std::find(objectsToGet.begin(), objectsToGet.end(), "mets") != objectsToGet.end())
659 >  if (find(objectsToGet.begin(), objectsToGet.end(), "mets") != objectsToGet.end())
660      event.getByLabel (mets_, mets);
661  
662 <  if (std::find(objectsToGet.begin(), objectsToGet.end(), "tracks") != objectsToGet.end())
662 >  if (find(objectsToGet.begin(), objectsToGet.end(), "tracks") != objectsToGet.end())
663      event.getByLabel (tracks_, tracks);
664  
665 <  if (std::find(objectsToGet.begin(), objectsToGet.end(), "genjets") != objectsToGet.end())
665 >  if (find(objectsToGet.begin(), objectsToGet.end(), "genjets") != objectsToGet.end())
666      event.getByLabel (genjets_, genjets);
667  
668 <  if (std::find(objectsToGet.begin(), objectsToGet.end(), "mcparticles") != objectsToGet.end())
668 >  if (find(objectsToGet.begin(), objectsToGet.end(), "mcparticles") != objectsToGet.end())
669      event.getByLabel (mcparticles_, mcparticles);
670  
671 <  if (std::find(objectsToGet.begin(), objectsToGet.end(), "primaryvertexs") != objectsToGet.end())
671 >  if (find(objectsToGet.begin(), objectsToGet.end(), "primaryvertexs") != objectsToGet.end())
672      event.getByLabel (primaryvertexs_, primaryvertexs);
673  
674 <  if (std::find(objectsToGet.begin(), objectsToGet.end(), "bxlumis") != objectsToGet.end())
674 >  if (find(objectsToGet.begin(), objectsToGet.end(), "bxlumis") != objectsToGet.end())
675      event.getByLabel (bxlumis_, bxlumis);
676  
677 <  if (std::find(objectsToGet.begin(), objectsToGet.end(), "photons") != objectsToGet.end())
677 >  if (find(objectsToGet.begin(), objectsToGet.end(), "photons") != objectsToGet.end())
678      event.getByLabel (photons_, photons);
679  
680 <  if (std::find(objectsToGet.begin(), objectsToGet.end(), "superclusters") != objectsToGet.end())
680 >  if (find(objectsToGet.begin(), objectsToGet.end(), "superclusters") != objectsToGet.end())
681      event.getByLabel (superclusters_, superclusters);
682  
683 <  if (useTrackCaloRhoCorr_) {  
684 <    // Used only for pile-up correction of by-hand calculation of isolation energy.  
685 <    // This rho collection is not available in all BEANs.  
683 >  if (datasetType_ == "signalMC"){
684 >    if (find(objectsToGet.begin(), objectsToGet.end(), "stops") != objectsToGet.end())
685 >      event.getByLabel (stops_, stops);
686 >  }
687 >
688 >  if (useTrackCaloRhoCorr_) {
689 >    // Used only for pile-up correction of by-hand calculation of isolation energy.
690 >    // This rho collection is not available in all BEANs.
691      // For description of rho values for different jet reconstruction algorithms, see
692 <    // https://twiki.cern.ch/twiki/bin/view/CMS/JetAlgorithms#Algorithms  
693 <    event.getByLabel ("kt6CaloJets","rho", rhokt6CaloJetsHandle_);
692 >    // https://twiki.cern.ch/twiki/bin/view/CMS/JetAlgorithms#Algorithms
693 >    event.getByLabel ("kt6CaloJets","rho", rhokt6CaloJetsHandle_);
694    }
695  
696 +  double masterScaleFactor = 1.0;
697  
698    //get pile-up event weight
699 <  double scaleFactor = 1.00;
700 <  if(doPileupReweighting_ && datasetType_ != "data")
701 <    scaleFactor = puWeight_->at (events->at (0).numTruePV);
702 <
703 <  cTauScaleFactor_ = 1.0;
704 < #ifdef DISPLACED_SUSY
705 <  if (datasetType_ == "signalMC")
706 <    cTauScaleFactor_ = cTauWeight_->at (event);
707 < #endif
708 <  scaleFactor *= cTauScaleFactor_;
699 >  if (doPileupReweighting_ && datasetType_ != "data") {
700 >    //for "data" datasets, the numTruePV is always set to -1
701 >    if (events->at(0).numTruePV < 0) cout << "WARNING[OSUAnalysis::analyze]: Event has numTruePV<0.  Turning off pile-up reweighting." << endl;
702 >    else masterScaleFactor *= puWeight_->at (events->at (0).numTruePV);
703 >  }
704 >
705 >  stopCTauScaleFactor_ = 1.0;
706 >  if (datasetType_ == "signalMC" && regex_match (dataset_, regex ("stop.*to.*_.*mm.*")))
707 >    stopCTauScaleFactor_ = stopCTauWeight_->at (event);
708 >  masterScaleFactor *= stopCTauScaleFactor_;
709  
710    //loop over all channels
711  
712 +  auto_ptr<map<string, bool> > channelDecisions (new map<string, bool>);
713    for(uint currentChannelIndex = 0; currentChannelIndex != channels.size(); currentChannelIndex++){
714      channel currentChannel = channels.at(currentChannelIndex);
715  
# Line 544 | Line 717 | OSUAnalysis::analyze (const edm::Event &
717      counterMap passingCounter;
718      cumulativeFlags.clear ();
719  
720 +    for (map<string, vector<float>>::iterator iter = BNTreeBranchVals_.begin();
721 +         iter != BNTreeBranchVals_.end(); iter++) {
722 +      iter->second.clear();  // clear array
723 +    }
724 +
725      bool triggerDecision = true;
726 <    if(currentChannel.triggers.size() != 0){  //triggers specified
727 <      triggerDecision = evaluateTriggers(currentChannel.triggers,triggers.product());
726 >    if(currentChannel.triggers.size() != 0 || currentChannel.triggersToVeto.size() != 0){  //triggers specified
727 >      triggerDecision = evaluateTriggers(currentChannel.triggers, currentChannel.triggersToVeto, triggers.product());
728        cutFlows_.at(currentChannelIndex)->at ("trigger") = triggerDecision;
729      }
730  
731      //loop over all cuts
554 –
555 –
556 –
732      for(uint currentCutIndex = 0; currentCutIndex != currentChannel.cuts.size(); currentCutIndex++){
733        cut currentCut = currentChannel.cuts.at(currentCutIndex);
559 –
734        for(uint currentObjectIndex = 0; currentObjectIndex != objectsToCut.size(); currentObjectIndex++){
735          string currentObject = objectsToCut.at(currentObjectIndex);
736  
737          //initialize maps to get ready to set cuts
738 <        individualFlags[currentObject].push_back (vector<bool> ());
739 <        cumulativeFlags[currentObject].push_back (vector<bool> ());
738 >        individualFlags[currentObject].push_back (vector<pair<bool,bool> > ());
739 >        cumulativeFlags[currentObject].push_back (vector<pair<bool,bool> > ());
740  
741        }
742        for(uint currentObjectIndex = 0; currentObjectIndex != objectsToCut.size(); currentObjectIndex++){
# Line 571 | Line 745 | OSUAnalysis::analyze (const edm::Event &
745          int flagsForPairCutsIndex = max(int(currentCutIndex-1),0);
746  
747  
748 <        if(currentObject == "jets") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,jets.product(),"jets");
749 <
750 <        else if(currentObject == "muons") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,muons.product(),"muons");
577 <
748 >        if     (currentObject == "jets")            setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,jets.product(),"jets");
749 >        else if(currentObject == "secondary jets")  setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,jets.product(),"secondary jets");
750 >        else if(currentObject == "muons")           setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,muons.product(),"muons");
751          else if(currentObject == "secondary muons") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,muons.product(),"secondary muons");
752 +        else if(currentObject == "secondary electrons") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,electrons.product(),"secondary electrons");
753          else if(currentObject == "electrons") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,electrons.product(),"electrons");
754          else if(currentObject == "events") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,events.product(),"events");
755          else if(currentObject == "taus") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,taus.product(),"taus");
# Line 587 | Line 761 | OSUAnalysis::analyze (const edm::Event &
761          else if(currentObject == "bxlumis") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,bxlumis.product(),"bxlumis");
762          else if(currentObject == "photons") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,photons.product(),"photons");
763          else if(currentObject == "superclusters") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,superclusters.product(),"superclusters");
764 +        else if(currentObject == "trigobjs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,trigobjs.product(),"trigobjs");
765 +
766  
767  
768          else if(currentObject == "muon-muon pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,muons.product(),muons.product(), \
# Line 595 | Line 771 | OSUAnalysis::analyze (const edm::Event &
771                                                                     "muon-muon pairs");
772  
773          else if(currentObject == "muon-secondary muon pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,muons.product(),muons.product(), \
774 <                                                                   cumulativeFlags.at("muons").at(flagsForPairCutsIndex), \
775 <                                                                   cumulativeFlags.at("secondary muons").at(flagsForPairCutsIndex), \
776 <                                                                   "muon-secondary muon pairs");
774 >                                                                             cumulativeFlags.at("muons").at(flagsForPairCutsIndex), \
775 >                                                                             cumulativeFlags.at("secondary muons").at(flagsForPairCutsIndex), \
776 >                                                                             "muon-secondary muon pairs");
777 >
778 >        else if(currentObject == "muon-secondary jet pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,muons.product(),jets.product(), \
779 >                                                                             cumulativeFlags.at("muons").at(flagsForPairCutsIndex), \
780 >                                                                             cumulativeFlags.at("secondary jets").at(flagsForPairCutsIndex), \
781 >                                                                             "muon-secondary jet pairs");
782 >        else if(currentObject == "photon-secondary jet pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,photons.product(),jets.product(), \
783 >                                                                             cumulativeFlags.at("photons").at(flagsForPairCutsIndex), \
784 >                                                                             cumulativeFlags.at("secondary jets").at(flagsForPairCutsIndex), \
785 >                                                                             "photon-secondary jet pairs");
786 >
787 >        else if(currentObject == "electron-secondary jet pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,electrons.product(),jets.product(), \
788 >                                                                             cumulativeFlags.at("electrons").at(flagsForPairCutsIndex), \
789 >                                                                             cumulativeFlags.at("secondary jets").at(flagsForPairCutsIndex), \
790 >                                                                             "electron-secondary jet pairs");
791 >
792 >        else if(currentObject == "electron-secondary electron pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,electrons.product(),electrons.product(), \
793 >                                                                                     cumulativeFlags.at("electrons").at(flagsForPairCutsIndex), \
794 >                                                                                     cumulativeFlags.at("secondary electrons").at(flagsForPairCutsIndex), \
795 >                                                                                     "electron-secondary electron pairs");
796  
797          else if(currentObject == "electron-electron pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,electrons.product(),electrons.product(), \
798                                                                             cumulativeFlags.at("electrons").at(flagsForPairCutsIndex), \
# Line 607 | Line 802 | OSUAnalysis::analyze (const edm::Event &
802                                                                         cumulativeFlags.at("electrons").at(flagsForPairCutsIndex), \
803                                                                         cumulativeFlags.at("muons").at(flagsForPairCutsIndex), \
804                                                                         "electron-muon pairs");
805 <        else if(currentObject == "track-event pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,tracks.product(),events.product(),
806 <                                                                     cumulativeFlags.at("tracks").at(flagsForPairCutsIndex),
807 <                                                                     cumulativeFlags.at("events").at(flagsForPairCutsIndex),
808 <                                                                     "track-event pairs");
809 <        else if(currentObject == "electron-track pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,electrons.product(),tracks.product(),
810 <                                                                        cumulativeFlags.at("electrons").at(flagsForPairCutsIndex),
811 <                                                                        cumulativeFlags.at("tracks").at(flagsForPairCutsIndex),
812 <                                                                        "electron-track pairs");
813 <        else if(currentObject == "muon-track pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,muons.product(),tracks.product(),
814 <                                                                    cumulativeFlags.at("muons").at(flagsForPairCutsIndex),
815 <                                                                    cumulativeFlags.at("tracks").at(flagsForPairCutsIndex),
816 <                                                                    "muon-track pairs");
817 <        else if(currentObject == "muon-tau pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,muons.product(),taus.product(),
818 <                                                                  cumulativeFlags.at("muons").at(flagsForPairCutsIndex),
819 <                                                                  cumulativeFlags.at("taus").at(flagsForPairCutsIndex),
820 <                                                                  "muon-tau pairs");
821 <        else if(currentObject == "tau-tau pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,taus.product(),taus.product(),
822 <                                                                 cumulativeFlags.at("taus").at(flagsForPairCutsIndex),
823 <                                                                 cumulativeFlags.at("taus").at(flagsForPairCutsIndex),
824 <                                                                 "tau-tau pairs");
825 <        else if(currentObject == "tau-track pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,taus .product(),tracks.product(),
805 >        else if(currentObject == "jet-jet pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,jets.product(),jets.product(), \
806 >                                                                 cumulativeFlags.at("jets").at(flagsForPairCutsIndex), \
807 >                                                                 cumulativeFlags.at("jets").at(flagsForPairCutsIndex), \
808 >                                                                 "jet-jet pairs");
809 >        else if(currentObject == "jet-secondary jet pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,jets.product(),jets.product(), \
810 >                                                                 cumulativeFlags.at("jets").at(flagsForPairCutsIndex), \
811 >                                                                 cumulativeFlags.at("secondary jets").at(flagsForPairCutsIndex),\
812 >                                                                 "jet-secondary jet pairs");
813 >        else if(currentObject == "electron-jet pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,electrons.product(),jets.product(), \
814 >                                                                      cumulativeFlags.at("electrons").at(flagsForPairCutsIndex), \
815 >                                                                      cumulativeFlags.at("jets").at(flagsForPairCutsIndex), \
816 >                                                                      "electron-jet pairs");
817 >        else if(currentObject == "electron-photon pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,electrons.product(),photons.product(), \
818 >                                                                      cumulativeFlags.at("electrons").at(flagsForPairCutsIndex), \
819 >                                                                      cumulativeFlags.at("photons").at(flagsForPairCutsIndex), \
820 >                                                                      "electron-photon pairs");
821 >        else if(currentObject == "photon-jet pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,photons.product(),jets.product(), \
822 >                                                                      cumulativeFlags.at("photons").at(flagsForPairCutsIndex), \
823 >                                                                      cumulativeFlags.at("jets").at(flagsForPairCutsIndex), \
824 >                                                                      "photon-jet pairs");
825 >        else if(currentObject == "muon-jet pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,muons.product(),jets.product(), \
826 >                                                                  cumulativeFlags.at("muons").at(flagsForPairCutsIndex), \
827 >                                                                  cumulativeFlags.at("jets").at(flagsForPairCutsIndex), \
828 >                                                                  "muon-jet pairs");
829 >        else if(currentObject == "muon-photon pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,muons.product(),photons.product(), \
830 >                                                                  cumulativeFlags.at("muons").at(flagsForPairCutsIndex), \
831 >                                                                  cumulativeFlags.at("photons").at(flagsForPairCutsIndex), \
832 >                                                                  "muon-photon pairs");
833 >        else if(currentObject == "track-event pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,tracks.product(),events.product(),
834 >                                                                     cumulativeFlags.at("tracks").at(flagsForPairCutsIndex),
835 >                                                                     cumulativeFlags.at("events").at(flagsForPairCutsIndex),
836 >                                                                     "track-event pairs");
837 >        else if(currentObject == "electron-track pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,electrons.product(),tracks.product(),
838 >                                                                        cumulativeFlags.at("electrons").at(flagsForPairCutsIndex),
839 >                                                                        cumulativeFlags.at("tracks").at(flagsForPairCutsIndex),
840 >                                                                        "electron-track pairs");
841 >        else if(currentObject == "muon-track pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,muons.product(),tracks.product(),
842 >                                                                    cumulativeFlags.at("muons").at(flagsForPairCutsIndex),
843 >                                                                    cumulativeFlags.at("tracks").at(flagsForPairCutsIndex),
844 >                                                                    "muon-track pairs");
845 >        else if(currentObject == "muon-tau pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,muons.product(),taus.product(),
846 >                                                                  cumulativeFlags.at("muons").at(flagsForPairCutsIndex),
847 >                                                                  cumulativeFlags.at("taus").at(flagsForPairCutsIndex),
848 >                                                                  "muon-tau pairs");
849 >        else if(currentObject == "tau-tau pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,taus.product(),taus.product(),
850                                                                   cumulativeFlags.at("taus").at(flagsForPairCutsIndex),
851 <                                                                 cumulativeFlags.at("tracks").at(flagsForPairCutsIndex),
852 <                                                                 "tau-track pairs");
853 <        
854 <        
851 >                                                                 cumulativeFlags.at("taus").at(flagsForPairCutsIndex),
852 >                                                                 "tau-tau pairs");
853 >        else if(currentObject == "tau-track pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,taus .product(),tracks.product(),
854 >                                                                   cumulativeFlags.at("taus").at(flagsForPairCutsIndex),
855 >                                                                   cumulativeFlags.at("tracks").at(flagsForPairCutsIndex),
856 >                                                                   "tau-track pairs");
857 >        else if(currentObject == "electron-trigobj pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,electrons.product(),trigobjs.product(),
858 >                                                                          cumulativeFlags.at("electrons").at(flagsForPairCutsIndex),
859 >                                                                          cumulativeFlags.at("trigobjs").at(flagsForPairCutsIndex),
860 >                                                                          "electron-trigobj pairs");
861 >        else if(currentObject == "muon-trigobj pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,muons.product(),trigobjs.product(),
862 >                                                                      cumulativeFlags.at("muons").at(flagsForPairCutsIndex),
863 >                                                                      cumulativeFlags.at("trigobjs").at(flagsForPairCutsIndex),
864 >                                                                      "muon-trigobj pairs");
865 >
866 >        if(currentObject == "stops" && datasetType_ == "signalMC") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,stops.product(),"stops");
867        }
868  
869  
870  
871      }//end loop over all cuts
641 –
642 –
872      //use cumulative flags to apply cuts at event level
873  
874 +    //a vector to store cumulative cut descisions after each cut.
875 +    vector<bool> eventPassedPreviousCuts;
876      bool eventPassedAllCuts = true;
646 –
877      //apply trigger (true if none were specified)
878      eventPassedAllCuts = eventPassedAllCuts && triggerDecision;
879  
650 –
880      for(uint currentCutIndex = 0; currentCutIndex != currentChannel.cuts.size(); currentCutIndex++){
881  
882        //loop over all objects and count how many passed the cumulative selection up to this point
# Line 655 | Line 884 | OSUAnalysis::analyze (const edm::Event &
884        int numberPassing = 0;
885  
886        for (uint object = 0; object != cumulativeFlags.at(currentCut.inputCollection).at(currentCutIndex).size() ; object++){
887 <        if(cumulativeFlags.at(currentCut.inputCollection).at(currentCutIndex).at(object)) numberPassing++;
887 >        if(cumulativeFlags.at(currentCut.inputCollection).at(currentCutIndex).at(object).first) numberPassing++;
888        }
889        bool cutDecision = evaluateComparison(numberPassing,currentCut.eventComparativeOperator,currentCut.numberRequired);
890        cutFlows_.at(currentChannelIndex)->at (currentCut.name) = cutDecision;
891        eventPassedAllCuts = eventPassedAllCuts && cutDecision;
892 +      eventPassedPreviousCuts.push_back(eventPassedAllCuts);
893 +    }
894 +    double scaleFactor = masterScaleFactor;
895 +
896 +    muonScaleFactor_ = electronScaleFactor_ = bTagScaleFactor_ = 1.0;
897 +    if(applyLeptonSF_ && datasetType_ != "data"){
898 +      if(cumulativeFlags.find ("muons") != cumulativeFlags.end ()){
899 +        flagPair muonFlags;
900 +        for (int i = cumulativeFlags.at("muons").size() - 1; i >= 0; i--){
901 +          if (cumulativeFlags.at("muons").at(i).size()){
902 +            muonFlags = cumulativeFlags.at("muons").at(i);
903 +            break;
904 +          }
905 +        }
906 +        for (uint muonIndex = 0; muonIndex != muonFlags.size(); muonIndex++){
907 +          if(!muonFlags.at(muonIndex).second) continue;
908 +          muonScaleFactor_ *= muonSFWeight_->at (muons->at(muonIndex).eta);
909 +        }
910 +      }
911 +      if(cumulativeFlags.find ("electrons") != cumulativeFlags.end ()){
912 +        flagPair electronFlags;
913 +        for (int i = cumulativeFlags.at("electrons").size() - 1; i >= 0; i--){
914 +          if (cumulativeFlags.at("electrons").at(i).size()){
915 +            electronFlags = cumulativeFlags.at("electrons").at(i);
916 +            break;
917 +          }
918 +        }
919 +        for (uint electronIndex = 0; electronIndex != electronFlags.size(); electronIndex++){
920 +          if(!electronFlags.at(electronIndex).second) continue;
921 +          electronScaleFactor_ *= electronSFWeight_->at (electrons->at(electronIndex).eta, electrons->at(electronIndex).pt);
922 +        }
923 +      }
924 +    }
925 +    if(applyBtagSF_ && datasetType_ != "data"){
926 +     if(cumulativeFlags.find ("jets") != cumulativeFlags.end ()){
927 +       flagPair jetFlags;
928 +        vector<double> jetSFs;
929 +        for (int i = cumulativeFlags.at("jets").size() - 1; i >= 0; i--){
930 +          if (cumulativeFlags.at("jets").at(i).size()){
931 +            jetFlags = cumulativeFlags.at("jets").at(i);
932 +            break;
933 +          }
934 +        }
935 +        for (uint jetIndex = 0; jetIndex != jetFlags.size(); jetIndex++){
936 +          if(!jetFlags.at(jetIndex).second) continue;
937 +          double jetSFTmp = bTagSFWeight_->sflookup(jets->at(jetIndex).btagCombinedSecVertex, jets->at(jetIndex).pt, jets->at(jetIndex).flavour);
938 +          jetSFs.push_back(jetSFTmp);
939 +        }
940 +        bTagScaleFactor_ *= bTagSFWeight_->weight( jetSFs, minBtag_, maxBtag_ );
941 +      }
942 +    }
943 +    scaleFactor *= muonScaleFactor_;
944 +    scaleFactor *= electronScaleFactor_;
945 +    scaleFactor *= bTagScaleFactor_;
946 +    cutFlows_.at(currentChannelIndex)->fillCutFlow(scaleFactor);
947  
948 +    if (printEventInfo_) {
949 +      // Write information about event to screen, for testing purposes.
950 +      cout << "Event passed all cuts in channel " <<  currentChannel.name
951 +           << ": run="  << events->at(0).run
952 +           << "  lumi=" << events->at(0).lumi
953 +           << "  event=" << events->at(0).evt
954 +           << endl;
955      }
956  
666 –    //     if(datasetType_ != "data") {
667 –    //       scaleFactor *= muonSFWeight_->at (chosenMuon ()->eta);
668 –    //       scaleFactor *= electronSFWeight_->at (chosenElectron ()->eta, chosenElectron ()->pt);
669 –    //     }
957  
958 <    cutFlows_.at(currentChannelIndex)->fillCutFlow(scaleFactor);
958 >    //filling histograms
959 >    for(uint currentCut = 0; currentCut != oneDHists_.at(currentChannelIndex).size(); currentCut++){//loop over all the directories in each channel.
960 >      uint currentDir;
961 >      if (!GetPlotsAfterEachCut_) { currentDir =  currentChannel.cuts.size() - oneDHists_.at(currentChannelIndex).size(); } //if GetPlotsAfterEachCut_ is false, set currentDir point to the last cut.
962 >      else{
963 >        currentDir = currentCut;
964 >      }
965  
966  
967 +      if(eventPassedPreviousCuts.at(currentDir)){
968  
969 <    if(!eventPassedAllCuts)continue;
969 >        for (uint histogramIndex = 0; histogramIndex != histograms.size(); histogramIndex++){
970 >          histogram currentHistogram = histograms.at(histogramIndex);
971  
972 <    if (printEventInfo_) {
973 <      // Write information about event to screen, for testing purposes.  
974 <      cout << "Event passed all cuts in channel " <<  currentChannel.name
975 <           << ": run="  << events->at(0).run
976 <           << "  lumi=" << events->at(0).lumi
977 <           << "  event=" << events->at(0).evt
978 <           << endl;  
979 <    }
972 >          if (cumulativeFlags.count(currentHistogram.inputCollection) == 0) cout << "Error: no flags found for collection:  " << currentHistogram.inputCollection << ", will cause a seg fault" << endl;
973 >
974 >          if(currentHistogram.inputVariables.size() == 1){
975 >            TH1D* histo;
976 >            histo = oneDHists_.at(currentChannelIndex).at(currentCut).at(currentHistogram.name);
977 >            if     (currentHistogram.inputCollection == "jets")            fill1DHistogram(histo,currentHistogram,jets.product(),cumulativeFlags.at("jets").at(currentDir),scaleFactor);
978 >            else if(currentHistogram.inputCollection == "secondary jets")  fill1DHistogram(histo,currentHistogram,jets.product(),cumulativeFlags.at("secondary jets").at(currentDir),scaleFactor);
979 >            else if(currentHistogram.inputCollection == "muons")           fill1DHistogram(histo,currentHistogram,muons.product(),cumulativeFlags.at("muons").at(currentDir),scaleFactor);
980 >            else if(currentHistogram.inputCollection == "secondary muons") fill1DHistogram(histo,currentHistogram,muons.product(),cumulativeFlags.at("secondary muons").at(currentDir),scaleFactor);
981 >            else if(currentHistogram.inputCollection == "secondary electrons") fill1DHistogram(histo,currentHistogram,electrons.product(),cumulativeFlags.at("secondary electrons").at(currentDir),scaleFactor);
982 >            else if(currentHistogram.inputCollection == "muon-muon pairs") fill1DHistogram(histo,currentHistogram,muons.product(),muons.product(), \
983 >                                                                                           cumulativeFlags.at("muons").at(currentDir),cumulativeFlags.at("muons").at(currentDir), \
984 >                                                                                           cumulativeFlags.at("muon-muon pairs").at(currentDir),scaleFactor);
985 >            else if(currentHistogram.inputCollection == "muon-secondary muon pairs") fill1DHistogram(histo,currentHistogram,muons.product(),muons.product(), \
986 >                                                                                                     cumulativeFlags.at("muons").at(currentDir),cumulativeFlags.at("secondary muons").at(currentDir), \
987 >                                                                                                     cumulativeFlags.at("muon-secondary muon pairs").at(currentDir),scaleFactor);
988 >             else if(currentHistogram.inputCollection == "muon-secondary jet pairs") fill1DHistogram(histo,currentHistogram,muons.product(),jets.product(), \
989 >                                                                                                     cumulativeFlags.at("muons").at(currentDir),cumulativeFlags.at("secondary jets").at(currentDir), \
990 >                                                                                                     cumulativeFlags.at("muon-secondary jet pairs").at(currentDir),scaleFactor);
991 >             else if(currentHistogram.inputCollection == "photon-secondary jet pairs") fill1DHistogram(histo,currentHistogram,photons.product(),jets.product(), \
992 >                                                                                                     cumulativeFlags.at("photons").at(currentDir),cumulativeFlags.at("secondary jets").at(currentDir), \
993 >                                                                                                     cumulativeFlags.at("photon-secondary jet pairs").at(currentDir),scaleFactor);
994 >             else if(currentHistogram.inputCollection == "electron-secondary jet pairs") fill1DHistogram(histo,currentHistogram,electrons.product(),jets.product(), \
995 >                                                                                                     cumulativeFlags.at("electrons").at(currentDir),cumulativeFlags.at("secondary jets").at(currentDir), \
996 >                                                                                                     cumulativeFlags.at("electron-secondary jet pairs").at(currentDir),scaleFactor);
997 >
998 >            else if(currentHistogram.inputCollection == "electrons") fill1DHistogram(histo,currentHistogram,electrons.product(),cumulativeFlags.at("electrons").at(currentDir),scaleFactor);
999 >            else if(currentHistogram.inputCollection == "electron-electron pairs") fill1DHistogram(histo,currentHistogram,electrons.product(),electrons.product(),\
1000 >                                                                                                   cumulativeFlags.at("electrons").at(currentDir),cumulativeFlags.at("electrons").at(currentDir),\
1001 >                                                                                                   cumulativeFlags.at("electron-electron pairs").at(currentDir),scaleFactor);
1002 >            else if(currentHistogram.inputCollection == "jet-jet pairs") fill1DHistogram(histo,currentHistogram,jets.product(),jets.product(),\
1003 >                                                                                         cumulativeFlags.at("jets").at(currentDir),cumulativeFlags.at("jets").at(currentDir),\
1004 >                                                                                         cumulativeFlags.at("jet-jet pairs").at(currentDir),scaleFactor);
1005 >             else if(currentHistogram.inputCollection == "jet-secondary jet pairs") fill1DHistogram(histo,currentHistogram,jets.product(),jets.product(), \
1006 >                                                                                                     cumulativeFlags.at("jets").at(currentDir),cumulativeFlags.at("secondary jets").at(currentDir), \
1007 >                                                                                                     cumulativeFlags.at("jet-secondary jet pairs").at(currentDir),scaleFactor);
1008 >
1009 >            else if(currentHistogram.inputCollection == "electron-secondary electron pairs") fill1DHistogram(histo,currentHistogram,electrons.product(),electrons.product(), \
1010 >                                                                                                             cumulativeFlags.at("electrons").at(currentDir),cumulativeFlags.at("secondary electrons").at(currentDir), \
1011 >                                                                                                             cumulativeFlags.at("electron-secondary electron pairs").at(currentDir),scaleFactor);
1012 >            else if(currentHistogram.inputCollection == "electron-muon pairs") fill1DHistogram(histo,currentHistogram, electrons.product(),muons.product(), \
1013 >                                                                                               cumulativeFlags.at("electrons").at(currentDir),cumulativeFlags.at("muons").at(currentDir),
1014 >                                                                                               cumulativeFlags.at("electron-muon pairs").at(currentDir),scaleFactor);
1015 >            else if(currentHistogram.inputCollection == "electron-jet pairs") fill1DHistogram(histo,currentHistogram, electrons.product(),jets.product(), \
1016 >                                                                                              cumulativeFlags.at("electrons").at(currentDir),cumulativeFlags.at("jets").at(currentDir),
1017 >                                                                                              cumulativeFlags.at("electron-jet pairs").at(currentDir),scaleFactor);
1018 >            else if(currentHistogram.inputCollection == "photon-jet pairs") fill1DHistogram(histo,currentHistogram, photons.product(),jets.product(), \
1019 >                                                                                              cumulativeFlags.at("photons").at(currentDir),cumulativeFlags.at("jets").at(currentDir),
1020 >                                                                                              cumulativeFlags.at("photon-jet pairs").at(currentDir),scaleFactor);
1021 >            else if(currentHistogram.inputCollection == "muon-jet pairs") fill1DHistogram(histo,currentHistogram, muons.product(),jets.product(), \
1022 >                                                                                          cumulativeFlags.at("muons").at(currentDir),cumulativeFlags.at("jets").at(currentDir),
1023 >                                                                                          cumulativeFlags.at("muon-jet pairs").at(currentDir),scaleFactor);
1024 >            else if(currentHistogram.inputCollection == "muon-photon pairs") fill1DHistogram(histo,currentHistogram, muons.product(),photons.product(), \
1025 >                                                                                          cumulativeFlags.at("muons").at(currentDir),cumulativeFlags.at("photons").at(currentDir),
1026 >                                                                                          cumulativeFlags.at("muon-photon pairs").at(currentDir),scaleFactor);
1027 >            else if(currentHistogram.inputCollection == "electron-photon pairs") fill1DHistogram(histo,currentHistogram, electrons.product(),photons.product(), \
1028 >                                                                                          cumulativeFlags.at("electrons").at(currentDir),cumulativeFlags.at("photons").at(currentDir),
1029 >                                                                                          cumulativeFlags.at("electron-photon pairs").at(currentDir),scaleFactor);
1030 >            else if(currentHistogram.inputCollection == "electron-track pairs") fill1DHistogram(histo,currentHistogram, electrons.product(),tracks.product(),
1031 >                                                                                                cumulativeFlags.at("electrons").at(currentDir),cumulativeFlags.at("tracks").at(currentDir),
1032 >                                                                                                cumulativeFlags.at("electron-track pairs").at(currentDir),scaleFactor);
1033 >            else if(currentHistogram.inputCollection == "muon-track pairs") fill1DHistogram(histo,currentHistogram, muons.product(),tracks.product(),
1034 >                                                                                            cumulativeFlags.at("muons").at(currentDir),cumulativeFlags.at("tracks").at(currentDir),
1035 >                                                                                            cumulativeFlags.at("muon-track pairs").at(currentDir),scaleFactor);
1036 >            else if(currentHistogram.inputCollection == "muon-tau pairs") fill1DHistogram(histo,currentHistogram, muons.product(),taus.product(),
1037 >                                                                                          cumulativeFlags.at("muons").at(currentDir),cumulativeFlags.at("taus").at(currentDir),
1038 >                                                                                          cumulativeFlags.at("muon-tau pairs").at(currentDir),scaleFactor);
1039 >            else if(currentHistogram.inputCollection == "tau-tau pairs") fill1DHistogram(histo,currentHistogram, taus.product(),taus.product(),
1040 >                                                                                         cumulativeFlags.at("taus").at(currentDir),cumulativeFlags.at("taus").at(currentDir),
1041 >                                                                                         cumulativeFlags.at("tau-tau pairs").at(currentDir),scaleFactor);
1042 >            else if(currentHistogram.inputCollection == "tau-track pairs") fill1DHistogram(histo,currentHistogram, taus.product(),tracks.product(),
1043 >                                                                                           cumulativeFlags.at("taus").at(currentDir),cumulativeFlags.at("tracks").at(currentDir),
1044 >                                                                                           cumulativeFlags.at("tau-track pairs").at(currentDir),scaleFactor);
1045 >            else if(currentHistogram.inputCollection == "electron-trigobj pairs") fill1DHistogram(histo,currentHistogram, electrons.product(),trigobjs.product(),
1046 >                                                                                                  cumulativeFlags.at("electrons").at(currentDir),cumulativeFlags.at("trigobjs").at(currentDir),
1047 >                                                                                                  cumulativeFlags.at("electron-trigobj pairs").at(currentDir),scaleFactor);
1048 >            else if(currentHistogram.inputCollection == "muon-trigobj pairs") fill1DHistogram(histo,currentHistogram, muons.product(),trigobjs.product(),
1049 >                                                                                              cumulativeFlags.at("muons").at(currentDir),cumulativeFlags.at("trigobjs").at(currentDir),
1050 >                                                                                              cumulativeFlags.at("muon-trigobj pairs").at(currentDir),scaleFactor);
1051 >
1052 >            else if(currentHistogram.inputCollection == "events") fill1DHistogram(histo,currentHistogram,events.product(),cumulativeFlags.at("events").at(currentDir),scaleFactor);
1053 >            else if(currentHistogram.inputCollection == "taus") fill1DHistogram(histo,currentHistogram,taus.product(),cumulativeFlags.at("taus").at(currentDir),scaleFactor);
1054 >            else if(currentHistogram.inputCollection == "mets") fill1DHistogram(histo,currentHistogram,mets.product(),cumulativeFlags.at("mets").at(currentDir),scaleFactor);
1055 >            else if(currentHistogram.inputCollection == "tracks") fill1DHistogram(histo,currentHistogram,tracks.product(),cumulativeFlags.at("tracks").at(currentDir),scaleFactor);
1056 >            else if(currentHistogram.inputCollection == "genjets") fill1DHistogram(histo,currentHistogram,genjets.product(),cumulativeFlags.at("genjets").at(currentDir),scaleFactor);
1057 >            else if(currentHistogram.inputCollection == "mcparticles") fill1DHistogram(histo,currentHistogram,mcparticles.product(),cumulativeFlags.at("mcparticles").at(currentDir),scaleFactor);
1058 >            else if(currentHistogram.inputCollection == "primaryvertexs") fill1DHistogram(histo,currentHistogram,primaryvertexs.product(),cumulativeFlags.at("primaryvertexs").at(currentDir),scaleFactor);
1059 >            else if(currentHistogram.inputCollection == "bxlumis") fill1DHistogram(histo,currentHistogram,bxlumis.product(),cumulativeFlags.at("bxlumis").at(currentDir),scaleFactor);
1060 >            else if(currentHistogram.inputCollection == "photons") fill1DHistogram(histo,currentHistogram,photons.product(),cumulativeFlags.at("photons").at(currentDir),scaleFactor);
1061 >            else if(currentHistogram.inputCollection == "superclusters") fill1DHistogram(histo,currentHistogram,superclusters.product(),cumulativeFlags.at("superclusters").at(currentDir),scaleFactor);
1062 >            else if(currentHistogram.inputCollection == "trigobjs") fill1DHistogram(histo,currentHistogram,trigobjs.product(),cumulativeFlags.at("trigobjs").at(currentDir),scaleFactor);
1063 >            else if(currentHistogram.inputCollection == "stops" && datasetType_ == "signalMC") fill1DHistogram(histo,currentHistogram,stops.product(),cumulativeFlags.at("stops").at(currentDir),scaleFactor);
1064 >          }
1065 >          else if(currentHistogram.inputVariables.size() == 2){
1066 >            TH2D* histo;
1067 >            histo = twoDHists_.at(currentChannelIndex).at(currentCut).at(currentHistogram.name);
1068 >            if     (currentHistogram.inputCollection == "jets")            fill2DHistogram(histo,currentHistogram,jets.product(),cumulativeFlags.at("jets").at(currentDir),scaleFactor);
1069 >            else if(currentHistogram.inputCollection == "secondary jets")  fill2DHistogram(histo,currentHistogram,jets.product(),cumulativeFlags.at("secondary jets").at(currentDir),scaleFactor);
1070 >            else if(currentHistogram.inputCollection == "muons")           fill2DHistogram(histo,currentHistogram,muons.product(),cumulativeFlags.at("muons").at(currentDir),scaleFactor);
1071 >            else if(currentHistogram.inputCollection == "secondary muons") fill2DHistogram(histo,currentHistogram,muons.product(),cumulativeFlags.at("secondary muons").at(currentDir),scaleFactor);
1072 >            else if(currentHistogram.inputCollection == "muon-muon pairs") fill2DHistogram(histo,currentHistogram,muons.product(),muons.product(), \
1073 >                                                                                           cumulativeFlags.at("muons").at(currentDir),cumulativeFlags.at("muons").at(currentDir), \
1074 >                                                                                           cumulativeFlags.at("muon-muon pairs").at(currentDir),scaleFactor);
1075 >            else if(currentHistogram.inputCollection == "muon-secondary muon pairs") fill2DHistogram(histo,currentHistogram,muons.product(),muons.product(), \
1076 >                                                                                                     cumulativeFlags.at("muons").at(currentDir),cumulativeFlags.at("secondary muons").at(currentDir), \
1077 >                                                                                                     cumulativeFlags.at("muon-secondary muon pairs").at(currentDir),scaleFactor);
1078 >            else if(currentHistogram.inputCollection == "muon-secondary jet pairs") fill2DHistogram(histo,currentHistogram,muons.product(),jets.product(), \
1079 >                                                                                                     cumulativeFlags.at("muons").at(currentDir),cumulativeFlags.at("secondary jets").at(currentDir), \
1080 >                                                                                                     cumulativeFlags.at("muon-secondary jet pairs").at(currentDir),scaleFactor);
1081 >            else if(currentHistogram.inputCollection == "electron-secondary jet pairs") fill2DHistogram(histo,currentHistogram,electrons.product(),jets.product(), \
1082 >                                                                                                     cumulativeFlags.at("electrons").at(currentDir),cumulativeFlags.at("secondary jets").at(currentDir), \
1083 >                                                                                                     cumulativeFlags.at("electron-secondary jet pairs").at(currentDir),scaleFactor);
1084 >            else if(currentHistogram.inputCollection == "photon-secondary jet pairs") fill2DHistogram(histo,currentHistogram,photons.product(),jets.product(), \
1085 >                                                                                                     cumulativeFlags.at("photons").at(currentDir),cumulativeFlags.at("secondary jets").at(currentDir), \
1086 >                                                                                                     cumulativeFlags.at("photon-secondary jet pairs").at(currentDir),scaleFactor);
1087 >            else if(currentHistogram.inputCollection == "electrons") fill2DHistogram(histo,currentHistogram,electrons.product(),cumulativeFlags.at("electrons").at(currentDir),scaleFactor);
1088 >            else if(currentHistogram.inputCollection == "secondary electrons") fill2DHistogram(histo,currentHistogram,electrons.product(),cumulativeFlags.at("secondary electrons").at(currentDir),scaleFactor);
1089 >            else if(currentHistogram.inputCollection == "electron-electron pairs") fill2DHistogram(histo,currentHistogram,electrons.product(),electrons.product(), \
1090 >                                                                                                   cumulativeFlags.at("electrons").at(currentDir),cumulativeFlags.at("electrons").at(currentDir), \
1091 >                                                                                                   cumulativeFlags.at("electron-electron pairs").at(currentDir),scaleFactor);
1092 >            else if(currentHistogram.inputCollection == "jet-jet pairs") fill2DHistogram(histo,currentHistogram,jets.product(),jets.product(), \
1093 >                                                                                         cumulativeFlags.at("jets").at(currentDir),cumulativeFlags.at("jets").at(currentDir), \
1094 >                                                                                         cumulativeFlags.at("jet-jet pairs").at(currentDir),scaleFactor);
1095 >            else if(currentHistogram.inputCollection == "electron-secondary electron pairs") fill2DHistogram(histo,currentHistogram,electrons.product(),electrons.product(), \
1096 >                                                                                                             cumulativeFlags.at("electrons").at(currentDir),cumulativeFlags.at("secondary electrons").at(currentDir), \
1097 >                                                                                                             cumulativeFlags.at("electron-secondary electron pairs").at(currentDir),scaleFactor);
1098 >            else if(currentHistogram.inputCollection == "electron-muon pairs") fill2DHistogram(histo,currentHistogram,electrons.product(),muons.product(), \
1099 >                                                                                               cumulativeFlags.at("electrons").at(currentDir),cumulativeFlags.at("muons").at(currentDir), \
1100 >                                                                                               cumulativeFlags.at("electron-muon pairs").at(currentDir),scaleFactor);
1101 >            else if(currentHistogram.inputCollection == "electron-jet pairs") fill2DHistogram(histo,currentHistogram,electrons.product(),jets.product(), \
1102 >                                                                                              cumulativeFlags.at("electrons").at(currentDir),cumulativeFlags.at("jets").at(currentDir), \
1103 >                                                                                              cumulativeFlags.at("electron-jet pairs").at(currentDir),scaleFactor);
1104 >            else if(currentHistogram.inputCollection == "electron-photon pairs") fill2DHistogram(histo,currentHistogram,electrons.product(),photons.product(), \
1105 >                                                                                              cumulativeFlags.at("electrons").at(currentDir),cumulativeFlags.at("photons").at(currentDir), \
1106 >                                                                                              cumulativeFlags.at("electron-photon pairs").at(currentDir),scaleFactor);
1107 >            else if(currentHistogram.inputCollection == "muon-jet pairs") fill2DHistogram(histo,currentHistogram,muons.product(),jets.product(), \
1108 >                                                                                          cumulativeFlags.at("muons").at(currentDir),cumulativeFlags.at("jets").at(currentDir), \
1109 >                                                                                          cumulativeFlags.at("muon-jet pairs").at(currentDir),scaleFactor);
1110 >            else if(currentHistogram.inputCollection == "photon-jet pairs") fill2DHistogram(histo,currentHistogram,photons.product(),jets.product(), \
1111 >                                                                                          cumulativeFlags.at("photons").at(currentDir),cumulativeFlags.at("jets").at(currentDir), \
1112 >                                                                                          cumulativeFlags.at("photon-jet pairs").at(currentDir),scaleFactor);
1113 >            else if(currentHistogram.inputCollection == "muon-photon pairs") fill2DHistogram(histo,currentHistogram,muons.product(),photons.product(), \
1114 >                                                                                          cumulativeFlags.at("muons").at(currentDir),cumulativeFlags.at("photons").at(currentDir), \
1115 >                                                                                          cumulativeFlags.at("muon-photon pairs").at(currentDir),scaleFactor);
1116 >            else if(currentHistogram.inputCollection == "electron-track pairs") fill2DHistogram(histo,currentHistogram,electrons.product(),tracks.product(),
1117 >                                                                                                cumulativeFlags.at("electrons").at(currentDir),cumulativeFlags.at("tracks").at(currentDir),
1118 >                                                                                                cumulativeFlags.at("electron-track pairs").at(currentDir),scaleFactor);
1119 >            else if(currentHistogram.inputCollection == "muon-track pairs") fill2DHistogram(histo,currentHistogram,muons.product(),tracks.product(),
1120 >                                                                                            cumulativeFlags.at("muons").at(currentDir),cumulativeFlags.at("tracks").at(currentDir),
1121 >                                                                                            cumulativeFlags.at("muon-track pairs").at(currentDir),scaleFactor);
1122 >            else if(currentHistogram.inputCollection == "muon-tau pairs") fill2DHistogram(histo,currentHistogram,muons.product(),taus.product(),
1123 >                                                                                          cumulativeFlags.at("muons").at(currentDir),cumulativeFlags.at("taus").at(currentDir),
1124 >                                                                                          cumulativeFlags.at("muon-tau pairs").at(currentDir),scaleFactor);
1125 >            else if(currentHistogram.inputCollection == "tau-tau pairs") fill2DHistogram(histo,currentHistogram,taus.product(),taus.product(),
1126 >                                                                                         cumulativeFlags.at("taus").at(currentDir),cumulativeFlags.at("taus").at(currentDir),
1127 >                                                                                         cumulativeFlags.at("tau-tau pairs").at(currentDir),scaleFactor);
1128 >            else if(currentHistogram.inputCollection == "tau-track pairs") fill2DHistogram(histo,currentHistogram,taus.product(),tracks.product(),
1129 >                                                                                           cumulativeFlags.at("taus").at(currentDir),cumulativeFlags.at("tracks").at(currentDir),
1130 >                                                                                           cumulativeFlags.at("tau-track pairs").at(currentDir),scaleFactor);
1131 >            else if(currentHistogram.inputCollection == "electron-trigobj pairs") fill2DHistogram(histo,currentHistogram,electrons.product(),trigobjs.product(),
1132 >                                                                                                  cumulativeFlags.at("electrons").at(currentDir),cumulativeFlags.at("trigobjs").at(currentDir),
1133 >                                                                                                  cumulativeFlags.at("electron-trigobj pairs").at(currentDir),scaleFactor);
1134 >            else if(currentHistogram.inputCollection == "muon-trigobj pairs") fill2DHistogram(histo,currentHistogram,muons.product(),trigobjs.product(),
1135 >                                                                                              cumulativeFlags.at("muons").at(currentDir),cumulativeFlags.at("trigobjs").at(currentDir),
1136 >                                                                                              cumulativeFlags.at("muon-trigobj pairs").at(currentDir),scaleFactor);
1137 >            else if(currentHistogram.inputCollection == "events") fill2DHistogram(histo,currentHistogram,events.product(),cumulativeFlags.at("events").at(currentDir),scaleFactor);
1138 >            else if(currentHistogram.inputCollection == "taus") fill2DHistogram(histo,currentHistogram,taus.product(),cumulativeFlags.at("taus").at(currentDir),scaleFactor);
1139 >            else if(currentHistogram.inputCollection == "mets") fill2DHistogram(histo,currentHistogram,mets.product(),cumulativeFlags.at("mets").at(currentDir),scaleFactor);
1140 >            else if(currentHistogram.inputCollection == "tracks") fill2DHistogram(histo,currentHistogram,tracks.product(),cumulativeFlags.at("tracks").at(currentDir),scaleFactor);
1141 >            else if(currentHistogram.inputCollection == "track-event pairs") fill2DHistogram(histo,currentHistogram,tracks.product(),events.product(),
1142 >                                                                                             cumulativeFlags.at("tracks").at(currentDir),cumulativeFlags.at("events").at(currentDir),
1143 >                                                                                             cumulativeFlags.at("track-event pairs").at(currentDir),scaleFactor);
1144 >            else if(currentHistogram.inputCollection == "genjets") fill2DHistogram(histo,currentHistogram,genjets.product(),cumulativeFlags.at("genjets").at(currentDir),scaleFactor);
1145 >            else if(currentHistogram.inputCollection == "mcparticles") fill2DHistogram(histo,currentHistogram,mcparticles.product(),cumulativeFlags.at("mcparticles").at(currentDir),scaleFactor);
1146 >            else if(currentHistogram.inputCollection == "primaryvertexs") fill2DHistogram(histo,currentHistogram,primaryvertexs.product(),cumulativeFlags.at("primaryvertexs").at(currentDir),scaleFactor);
1147 >            else if(currentHistogram.inputCollection == "bxlumis") fill2DHistogram(histo,currentHistogram,bxlumis.product(),cumulativeFlags.at("bxlumis").at(currentDir),scaleFactor);
1148 >            else if(currentHistogram.inputCollection == "photons") fill2DHistogram(histo,currentHistogram,photons.product(),cumulativeFlags.at("photons").at(currentDir),scaleFactor);
1149 >            else if(currentHistogram.inputCollection == "superclusters") fill2DHistogram(histo,currentHistogram,superclusters.product(),cumulativeFlags.at("superclusters").at(currentDir),scaleFactor);
1150 >            else if(currentHistogram.inputCollection == "trigobjs") fill2DHistogram(histo,currentHistogram,trigobjs.product(),cumulativeFlags.at("trigobjs").at(currentDir),scaleFactor);
1151 >            else if(currentHistogram.inputCollection == "stops" && datasetType_ == "signalMC") fill2DHistogram(histo,currentHistogram,stops.product(),cumulativeFlags.at("stops").at(currentDir),scaleFactor);
1152 >          }
1153  
1154 +        }
1155  
687 –    //filling histograms
688 –    for (uint histogramIndex = 0; histogramIndex != histograms.size(); histogramIndex++){
689 –      histogram currentHistogram = histograms.at(histogramIndex);
1156  
1157 <      if(currentHistogram.inputVariables.size() == 1){
1158 <        TH1D* histo;
1159 <        histo = oneDHists_.at(currentChannelIndex).at(currentHistogram.name);
1160 <
1161 <        if(currentHistogram.inputCollection == "jets") fill1DHistogram(histo,currentHistogram,jets.product(),cumulativeFlags.at("jets").back(),scaleFactor);
1162 <        else if(currentHistogram.inputCollection == "muons") fill1DHistogram(histo,currentHistogram,muons.product(),cumulativeFlags.at("muons").back(),scaleFactor);
1163 <        else if(currentHistogram.inputCollection == "secondary muons") fill1DHistogram(histo,currentHistogram,muons.product(),cumulativeFlags.at("secondary muons").back(),scaleFactor);
1164 <        else if(currentHistogram.inputCollection == "muon-muon pairs") fill1DHistogram(histo,currentHistogram,muons.product(),muons.product(), \
1165 <                                                                                       cumulativeFlags.at("muons").back(),cumulativeFlags.at("muons").back(), \
1166 <                                                                                       cumulativeFlags.at("muon-muon pairs").back(),scaleFactor);
1167 <        else if(currentHistogram.inputCollection == "muon-secondary muon pairs") fill1DHistogram(histo,currentHistogram,muons.product(),muons.product(), \
1168 <                                                                                       cumulativeFlags.at("muons").back(),cumulativeFlags.at("secondary muons").back(), \
1169 <                                                                                       cumulativeFlags.at("muon-secondary muon pairs").back(),scaleFactor);
1170 <        else if(currentHistogram.inputCollection == "electrons") fill1DHistogram(histo,currentHistogram,electrons.product(),cumulativeFlags.at("electrons").back(),scaleFactor);
1171 <        else if(currentHistogram.inputCollection == "electron-electron pairs") fill1DHistogram(histo,currentHistogram,electrons.product(),electrons.product(),\
1172 <                                                                                               cumulativeFlags.at("electrons").back(),cumulativeFlags.at("electrons").back(),\
1173 <                                                                                               cumulativeFlags.at("electron-electron pairs").back(),scaleFactor);
1174 <        else if(currentHistogram.inputCollection == "electron-muon pairs") fill1DHistogram(histo,currentHistogram, electrons.product(),muons.product(), \
1175 <                                                                                           cumulativeFlags.at("electrons").back(),cumulativeFlags.at("muons").back(),
1176 <                                                                                           cumulativeFlags.at("electron-muon pairs").back(),scaleFactor);
1177 <        else if(currentHistogram.inputCollection == "electron-track pairs") fill1DHistogram(histo,currentHistogram, electrons.product(),tracks.product(),        
1178 <                                                                                            cumulativeFlags.at("electrons").back(),cumulativeFlags.at("tracks").back(),  
1179 <                                                                                            cumulativeFlags.at("electron-track pairs").back(),scaleFactor);      
1180 <        else if(currentHistogram.inputCollection == "muon-track pairs") fill1DHistogram(histo,currentHistogram, muons.product(),tracks.product(),        
1181 <                                                                                        cumulativeFlags.at("muons").back(),cumulativeFlags.at("tracks").back(),  
1182 <                                                                                        cumulativeFlags.at("muon-track pairs").back(),scaleFactor);      
1183 <        else if(currentHistogram.inputCollection == "muon-tau pairs") fill1DHistogram(histo,currentHistogram, muons.product(),taus.product(),    
1184 <                                                                                      cumulativeFlags.at("muons").back(),cumulativeFlags.at("taus").back(),      
1185 <                                                                                      cumulativeFlags.at("muon-tau pairs").back(),scaleFactor);  
1186 <        else if(currentHistogram.inputCollection == "tau-tau pairs") fill1DHistogram(histo,currentHistogram, taus.product(),taus.product(),      
1187 <                                                                                     cumulativeFlags.at("taus").back(),cumulativeFlags.at("taus").back(),        
1188 <                                                                                     cumulativeFlags.at("tau-tau pairs").back(),scaleFactor);    
1189 <        else if(currentHistogram.inputCollection == "tau-track pairs") fill1DHistogram(histo,currentHistogram, taus.product(),tracks.product(),
1190 <                                                                                     cumulativeFlags.at("taus").back(),cumulativeFlags.at("tracks").back(),
1191 <                                                                                     cumulativeFlags.at("tau-track pairs").back(),scaleFactor);
1192 <
1193 <        else if(currentHistogram.inputCollection == "events") fill1DHistogram(histo,currentHistogram,events.product(),cumulativeFlags.at("events").back(),scaleFactor);
1194 <        else if(currentHistogram.inputCollection == "taus") fill1DHistogram(histo,currentHistogram,taus.product(),cumulativeFlags.at("taus").back(),scaleFactor);
1195 <        else if(currentHistogram.inputCollection == "mets") fill1DHistogram(histo,currentHistogram,mets.product(),cumulativeFlags.at("mets").back(),scaleFactor);
1196 <        else if(currentHistogram.inputCollection == "tracks") fill1DHistogram(histo,currentHistogram,tracks.product(),cumulativeFlags.at("tracks").back(),scaleFactor);
1197 <        else if(currentHistogram.inputCollection == "genjets") fill1DHistogram(histo,currentHistogram,genjets.product(),cumulativeFlags.at("genjets").back(),scaleFactor);
1198 <        else if(currentHistogram.inputCollection == "mcparticles") fill1DHistogram(histo,currentHistogram,mcparticles.product(),cumulativeFlags.at("mcparticles").back(),scaleFactor);
1199 <        else if(currentHistogram.inputCollection == "primaryvertexs") fill1DHistogram(histo,currentHistogram,primaryvertexs.product(),cumulativeFlags.at("primaryvertexs").back(),scaleFactor);
1200 <        else if(currentHistogram.inputCollection == "bxlumis") fill1DHistogram(histo,currentHistogram,bxlumis.product(),cumulativeFlags.at("bxlumis").back(),scaleFactor);
1201 <        else if(currentHistogram.inputCollection == "photons") fill1DHistogram(histo,currentHistogram,photons.product(),cumulativeFlags.at("photons").back(),scaleFactor);
1202 <        else if(currentHistogram.inputCollection == "superclusters") fill1DHistogram(histo,currentHistogram,superclusters.product(),cumulativeFlags.at("superclusters").back(),scaleFactor);
1203 <      }
1204 <      else if(currentHistogram.inputVariables.size() == 2){
1205 <        TH2D* histo;
1206 <        histo = twoDHists_.at(currentChannelIndex).at(currentHistogram.name);
1207 <
1208 <        if(currentHistogram.inputCollection == "jets") fill2DHistogram(histo,currentHistogram,jets.product(),cumulativeFlags.at("jets").back(),scaleFactor);
1209 <        else if(currentHistogram.inputCollection == "muons") fill2DHistogram(histo,currentHistogram,muons.product(),cumulativeFlags.at("muons").back(),scaleFactor);
1210 <        else if(currentHistogram.inputCollection == "secondary muons") fill2DHistogram(histo,currentHistogram,muons.product(),cumulativeFlags.at("secondary muons").back(),scaleFactor);
1211 <        else if(currentHistogram.inputCollection == "muon-muon pairs") fill2DHistogram(histo,currentHistogram,muons.product(),muons.product(), \
1212 <                                                                                       cumulativeFlags.at("muons").back(),cumulativeFlags.at("muons").back(), \
1213 <                                                                                       cumulativeFlags.at("muon-muon pairs").back(),scaleFactor);
748 <        else if(currentHistogram.inputCollection == "muon-muon pairs") fill2DHistogram(histo,currentHistogram,muons.product(),muons.product(), \
749 <                                                                                       cumulativeFlags.at("muons").back(),cumulativeFlags.at("secondary muons").back(), \
750 <                                                                                       cumulativeFlags.at("muon-secondary muon pairs").back(),scaleFactor);
751 <        else if(currentHistogram.inputCollection == "electrons") fill2DHistogram(histo,currentHistogram,electrons.product(),cumulativeFlags.at("electrons").back(),scaleFactor);
752 <        else if(currentHistogram.inputCollection == "electron-electron pairs") fill2DHistogram(histo,currentHistogram,electrons.product(),electrons.product(), \
753 <                                                                                               cumulativeFlags.at("electrons").back(),cumulativeFlags.at("electrons").back(), \
754 <                                                                                               cumulativeFlags.at("electron-electron pairs").back(),scaleFactor);
755 <        else if(currentHistogram.inputCollection == "electron-muon pairs") fill2DHistogram(histo,currentHistogram,electrons.product(),muons.product(), \
756 <                                                                                           cumulativeFlags.at("electrons").back(),cumulativeFlags.at("muons").back(), \
757 <                                                                                           cumulativeFlags.at("electron-muon pairs").back(),scaleFactor);
758 <        else if(currentHistogram.inputCollection == "electron-track pairs") fill2DHistogram(histo,currentHistogram,electrons.product(),tracks.product(),        
759 <                                                                                            cumulativeFlags.at("electrons").back(),cumulativeFlags.at("tracks").back(),          
760 <                                                                                            cumulativeFlags.at("electron-track pairs").back(),scaleFactor);      
761 <        else if(currentHistogram.inputCollection == "muon-track pairs") fill2DHistogram(histo,currentHistogram,muons.product(),tracks.product(),        
762 <                                                                                        cumulativeFlags.at("muons").back(),cumulativeFlags.at("tracks").back(),          
763 <                                                                                        cumulativeFlags.at("muon-track pairs").back(),scaleFactor);      
764 <        else if(currentHistogram.inputCollection == "muon-tau pairs") fill2DHistogram(histo,currentHistogram,muons.product(),taus.product(),    
765 <                                                                                      cumulativeFlags.at("muons").back(),cumulativeFlags.at("taus").back(),      
766 <                                                                                      cumulativeFlags.at("muon-tau pairs").back(),scaleFactor);  
767 <        else if(currentHistogram.inputCollection == "tau-tau pairs") fill2DHistogram(histo,currentHistogram,taus.product(),taus.product(),      
768 <                                                                                     cumulativeFlags.at("taus").back(),cumulativeFlags.at("taus").back(),        
769 <                                                                                     cumulativeFlags.at("tau-tau pairs").back(),scaleFactor);    
770 <        else if(currentHistogram.inputCollection == "tau-track pairs") fill2DHistogram(histo,currentHistogram,taus.product(),tracks.product(),
771 <                                                                                     cumulativeFlags.at("taus").back(),cumulativeFlags.at("tracks").back(),
772 <                                                                                     cumulativeFlags.at("tau-track pairs").back(),scaleFactor);
773 <        else if(currentHistogram.inputCollection == "events") fill2DHistogram(histo,currentHistogram,events.product(),cumulativeFlags.at("events").back(),scaleFactor);
774 <        else if(currentHistogram.inputCollection == "taus") fill2DHistogram(histo,currentHistogram,taus.product(),cumulativeFlags.at("taus").back(),scaleFactor);
775 <        else if(currentHistogram.inputCollection == "mets") fill2DHistogram(histo,currentHistogram,mets.product(),cumulativeFlags.at("mets").back(),scaleFactor);
776 <        else if(currentHistogram.inputCollection == "tracks") fill2DHistogram(histo,currentHistogram,tracks.product(),cumulativeFlags.at("tracks").back(),scaleFactor);
777 <        else if(currentHistogram.inputCollection == "track-event pairs") fill2DHistogram(histo,currentHistogram,tracks.product(),events.product(),
778 <                                                                                         cumulativeFlags.at("tracks").back(),cumulativeFlags.at("events").back(),
779 <                                                                                         cumulativeFlags.at("track-event pairs").back(),scaleFactor);  
780 <        else if(currentHistogram.inputCollection == "genjets") fill2DHistogram(histo,currentHistogram,genjets.product(),cumulativeFlags.at("genjets").back(),scaleFactor);
781 <        else if(currentHistogram.inputCollection == "mcparticles") fill2DHistogram(histo,currentHistogram,mcparticles.product(),cumulativeFlags.at("mcparticles").back(),scaleFactor);
782 <        else if(currentHistogram.inputCollection == "primaryvertexs") fill2DHistogram(histo,currentHistogram,primaryvertexs.product(),cumulativeFlags.at("primaryvertexs").back(),scaleFactor);
783 <        else if(currentHistogram.inputCollection == "bxlumis") fill2DHistogram(histo,currentHistogram,bxlumis.product(),cumulativeFlags.at("bxlumis").back(),scaleFactor);
784 <        else if(currentHistogram.inputCollection == "photons") fill2DHistogram(histo,currentHistogram,photons.product(),cumulativeFlags.at("photons").back(),scaleFactor);
785 <        else if(currentHistogram.inputCollection == "superclusters") fill2DHistogram(histo,currentHistogram,superclusters.product(),cumulativeFlags.at("superclusters").back(),scaleFactor);
786 <      }
787 <    }
1157 >        //fills histograms with the sizes of collections
1158 >        for (uint currentObjectIndex = 0; currentObjectIndex != objectsToPlot.size(); currentObjectIndex++){
1159 >
1160 >          string currentObject = objectsToPlot.at(currentObjectIndex);
1161 >          string objectToPlot = "";
1162 >
1163 >          // Name of objectToPlot here must match the name specified in OSUAnalysis::OSUAnalysis().
1164 >          if(currentObject == "muon-muon pairs")                         objectToPlot = "dimuonPairs";
1165 >          else if(currentObject == "electron-electron pairs")            objectToPlot = "dielectronPairs";
1166 >          else if(currentObject == "electron-muon pairs")                objectToPlot = "electronMuonPairs";
1167 >          else if(currentObject == "electron-photon pairs")                objectToPlot = "electronPhotonPairs";
1168 >          else if(currentObject == "electron-jet pairs")                 objectToPlot = "electronJetPairs";
1169 >          else if(currentObject == "muon-jet pairs")                     objectToPlot = "muonJetPairs";
1170 >          else if(currentObject == "muon-photon pairs")                     objectToPlot = "muonPhotonPairs";
1171 >          else if(currentObject == "photon-jet pairs")                     objectToPlot = "photonJetPairs";
1172 >          else if(currentObject == "jet-jet pairs")                      objectToPlot = "dijetPairs";
1173 >          else if(currentObject == "jet-secondary jet pairs")            objectToPlot = "jetSecondaryJetPairs";
1174 >          else if(currentObject == "secondary jets")                     objectToPlot = "secondaryJets";
1175 >          else if(currentObject == "electron-track pairs")               objectToPlot = "electronTrackPairs";
1176 >          else if(currentObject == "muon-track pairs")                   objectToPlot = "muonTrackPairs";
1177 >          else if(currentObject == "muon-tau pairs")                     objectToPlot = "muonTauPairs";
1178 >          else if(currentObject == "tau-tau pairs")                      objectToPlot = "ditauPairs";
1179 >          else if(currentObject == "tau-track pairs")                    objectToPlot = "tauTrackPairs";
1180 >          else if(currentObject == "track-event pairs")                  objectToPlot = "trackEventPairs";
1181 >          else if(currentObject == "muon-secondary muon pairs")          objectToPlot = "muonSecondaryMuonPairs";
1182 >          else if(currentObject == "secondary muons")                    objectToPlot = "secondaryMuons";
1183 >          else if(currentObject == "muon-secondary jet pairs")           objectToPlot = "muonSecondaryJetPairs";
1184 >          else if(currentObject == "electron-secondary jet pairs")       objectToPlot = "electronSecondaryJetPairs";
1185 >          else if(currentObject == "photon-secondary jet pairs")       objectToPlot = "photonSecondaryJetPairs";
1186 >          else if(currentObject == "electron-secondary electron pairs")  objectToPlot = "electronSecondaryElectronPairs";
1187 >          else if(currentObject == "secondary electrons")                objectToPlot = "secondaryElectrons";
1188 >          else if(currentObject == "electron-trigobj pairs")             objectToPlot = "electronTrigobjPairs";
1189 >          else if(currentObject == "muon-trigobj pairs")                 objectToPlot = "muonTrigobjPairs";
1190 >          else objectToPlot = currentObject;
1191 >
1192 >          string tempCurrentObject = objectToPlot;
1193 >          tempCurrentObject.at(0) = toupper(tempCurrentObject.at(0));
1194 >          string histoName = "num" + tempCurrentObject;
1195 >
1196 >
1197 >          if(find(objectsToCut.begin(), objectsToCut.end(), currentObject) != objectsToCut.end()) {
1198 >            flagPair lastCutFlags = cumulativeFlags.at(currentObject).at(currentDir);
1199 >            int numToPlot = 0;
1200 >            for (uint currentFlag = 0; currentFlag != lastCutFlags.size(); currentFlag++){
1201 >              if(lastCutFlags.at(currentFlag).second) numToPlot++;
1202 >            }
1203 >
1204 >            if(objectToPlot == "primaryvertexs"){
1205 >              oneDHists_.at(currentChannelIndex).at(currentCut).at(histoName+"BeforePileupCorrection")->Fill(primaryvertexs->size());
1206 >              oneDHists_.at(currentChannelIndex).at(currentCut).at(histoName+"AfterPileupCorrection")->Fill(primaryvertexs->size(),scaleFactor);
1207 >            }
1208 >            else {
1209 >              oneDHists_.at(currentChannelIndex).at(currentCut).at(histoName)->Fill(numToPlot,scaleFactor);
1210 >            }
1211 >          }
1212 >        } // end for (uint currentObjectIndex = 0; currentObjectIndex != objectsToPlot.size(); currentObjectIndex++)
1213 >
1214  
1215 +      } // end if(eventPassedPreviousCuts.at(currentDir))
1216 +    } // end loop over cuts
1217  
1218 +    if (!useEDMFormat_ && eventPassedAllCuts){
1219 +      // Assign BNTree variables
1220 +      for (uint iBranch = 0; iBranch != treeBranches_.size(); iBranch++) {
1221 +        BranchSpecs brSpecs = treeBranches_.at(iBranch);
1222 +        string coll = brSpecs.inputCollection;
1223 +        if (cumulativeFlags.count(coll) == 0) cout << "Error: no flags found for collection:  " << coll << ", will cause a seg fault" << endl;
1224 +
1225 +        if     (coll == "jets")                assignTreeBranch(brSpecs,jets.product(),          cumulativeFlags.at(coll).back());
1226 +        else if(coll == "secondary jets")      assignTreeBranch(brSpecs,jets.product(),          cumulativeFlags.at(coll).back());
1227 +        else if(coll == "muons")               assignTreeBranch(brSpecs,muons.product(),         cumulativeFlags.at(coll).back());
1228 +        else if(coll == "secondary muons")     assignTreeBranch(brSpecs,muons.product(),         cumulativeFlags.at(coll).back());
1229 +        else if(coll == "electrons")           assignTreeBranch(brSpecs,electrons.product(),     cumulativeFlags.at(coll).back());
1230 +        else if(coll == "secondary electrons") assignTreeBranch(brSpecs,electrons.product(),     cumulativeFlags.at(coll).back());
1231 +        else if(coll == "events")              assignTreeBranch(brSpecs,events.product(),        cumulativeFlags.at(coll).back());
1232 +        else if(coll == "taus")                assignTreeBranch(brSpecs,taus.product(),          cumulativeFlags.at(coll).back());
1233 +        else if(coll == "mets")                assignTreeBranch(brSpecs,mets.product(),          cumulativeFlags.at(coll).back());
1234 +        else if(coll == "tracks")              assignTreeBranch(brSpecs,tracks.product(),        cumulativeFlags.at(coll).back());
1235 +        else if(coll == "genjets")             assignTreeBranch(brSpecs,genjets.product(),       cumulativeFlags.at(coll).back());
1236 +        else if(coll == "mcparticles")         assignTreeBranch(brSpecs,mcparticles.product(),   cumulativeFlags.at(coll).back());
1237 +        else if(coll == "primaryvertexs")      assignTreeBranch(brSpecs,primaryvertexs.product(),cumulativeFlags.at(coll).back());
1238 +        else if(coll == "bxlumis")             assignTreeBranch(brSpecs,bxlumis.product(),       cumulativeFlags.at(coll).back());
1239 +        else if(coll == "photons")             assignTreeBranch(brSpecs,photons.product(),       cumulativeFlags.at(coll).back());
1240 +        else if(coll == "superclusters")       assignTreeBranch(brSpecs,superclusters.product(), cumulativeFlags.at(coll).back());
1241 +        else if(coll == "trigobjs")            assignTreeBranch(brSpecs,trigobjs.product(),      cumulativeFlags.at(coll).back());
1242 +        else if(coll == "stops"
1243 +                && datasetType_ == "signalMC") assignTreeBranch(brSpecs,stops.product(),         cumulativeFlags.at(coll).back());
1244 +      } // end loop over branches
1245 +
1246 +      if (!BNTrees_.at(currentChannelIndex)) { cout << "ERROR:  Undefined BNTree.  Will likely seg fault." << endl; }
1247 +      BNTrees_.at(currentChannelIndex)->Fill();  // only fill if event has passed cuts
1248 +    }
1249  
1250 <    //fills histograms with the sizes of collections
792 <    for (uint currentObjectIndex = 0; currentObjectIndex != objectsToPlot.size(); currentObjectIndex++){
793 <
794 <      string currentObject = objectsToPlot.at(currentObjectIndex);
795 <
796 <      string objectToPlot = "";  
797 <
798 <      // Name of objectToPlot here must match the name specified in OSUAnalysis::OSUAnalysis().  
799 <      if(currentObject == "muon-muon pairs") objectToPlot = "dimuonPairs";
800 <      else if(currentObject == "electron-electron pairs") objectToPlot = "dielectronPairs";
801 <      else if(currentObject == "electron-muon pairs")     objectToPlot = "electronMuonPairs";
802 <      else if(currentObject == "electron-track pairs")    objectToPlot = "electronTrackPairs";
803 <      else if(currentObject == "muon-track pairs")        objectToPlot = "muonTrackPairs";      
804 <      else if(currentObject == "muon-tau pairs")          objectToPlot = "muonTauPairs";        
805 <      else if(currentObject == "tau-tau pairs")           objectToPlot = "ditauPairs";
806 <      else if(currentObject == "tau-track pairs")         objectToPlot = "tauTrackPairs";
807 <      else if(currentObject == "track-event pairs")       objectToPlot = "trackEventPairs";  
808 <      else if(currentObject == "muon-secondary muon pairs")       objectToPlot = "muonSecondaryMuonPairs";  
809 <      else if(currentObject == "secondary muons")         objectToPlot = "secondaryMuons";  
810 <      else objectToPlot = currentObject;
811 <
812 <      string tempCurrentObject = objectToPlot;
813 <      tempCurrentObject.at(0) = toupper(tempCurrentObject.at(0));  
814 <      string histoName = "num" + tempCurrentObject;
815 <
816 <      //set position of primary vertex in event, in order to calculate quantities relative to it
817 <      if(std::find(objectsToCut.begin(), objectsToCut.end(), currentObject) != objectsToCut.end()) {
818 <        vector<bool> lastCutFlags = cumulativeFlags.at(currentObject).back();
819 <        int numToPlot = 0;
820 <        for (uint currentFlag = 0; currentFlag != lastCutFlags.size(); currentFlag++){
821 <          if(lastCutFlags.at(currentFlag)) numToPlot++;
822 <        }
823 <        if(objectToPlot == "primaryvertexs"){
824 <          oneDHists_.at(currentChannelIndex).at(histoName+"BeforePileupCorrection")->Fill(primaryvertexs->size());
825 <          oneDHists_.at(currentChannelIndex).at(histoName+"AfterPileupCorrection")->Fill(primaryvertexs->size(),scaleFactor);
826 <        }
827 <        else {
828 <          oneDHists_.at(currentChannelIndex).at(histoName)->Fill(numToPlot,scaleFactor);
829 <        }
830 <      }
831 <      else if(objectToPlot == "jets") oneDHists_.at(currentChannelIndex).at(histoName)->Fill(jets->size(),scaleFactor);
832 <      else if(objectToPlot == "muons") oneDHists_.at(currentChannelIndex).at(histoName)->Fill(muons->size(),scaleFactor);
833 <      else if(objectToPlot == "secondaryMuons") oneDHists_.at(currentChannelIndex).at(histoName)->Fill(muons->size(),scaleFactor);
834 <      else if(objectToPlot == "dimuonPairs") oneDHists_.at(currentChannelIndex).at(histoName)->Fill(muons->size()*(muons->size()-1)/2,scaleFactor);
835 <      else if(objectToPlot == "muonSecondaryMuonPairs") oneDHists_.at(currentChannelIndex).at(histoName)->Fill(muons->size()*(muons->size()-1)/2,scaleFactor);
836 <      else if(objectToPlot == "electrons") oneDHists_.at(currentChannelIndex).at(histoName)->Fill(electrons->size(),scaleFactor);
837 <      else if(objectToPlot == "dielectronPairs") oneDHists_.at(currentChannelIndex).at(histoName)->Fill(electrons->size()*(electrons->size()-1)/2,scaleFactor);
838 <      else if(objectToPlot == "electronMuonPairs") oneDHists_.at(currentChannelIndex).at(histoName)->Fill(electrons->size()*muons->size(),scaleFactor);
839 <      else if(objectToPlot == "electronTrackPairs") oneDHists_.at(currentChannelIndex).at(histoName)->Fill(electrons->size()*tracks->size(),scaleFactor);
840 <      else if(objectToPlot == "events") oneDHists_.at(currentChannelIndex).at(histoName)->Fill(events->size(),scaleFactor);
841 <      else if(objectToPlot == "taus") oneDHists_.at(currentChannelIndex).at(histoName)->Fill(taus->size(),scaleFactor);
842 <      else if(objectToPlot == "mets") oneDHists_.at(currentChannelIndex).at(histoName)->Fill(mets->size(),scaleFactor);
843 <      else if(objectToPlot == "tracks") oneDHists_.at(currentChannelIndex).at(histoName)->Fill(tracks->size(),scaleFactor);
844 <      else if(objectToPlot == "genjets") oneDHists_.at(currentChannelIndex).at(histoName)->Fill(genjets->size(),scaleFactor);
845 <      else if(objectToPlot == "mcparticles") oneDHists_.at(currentChannelIndex).at(histoName)->Fill(mcparticles->size(),scaleFactor);
846 <      else if(objectToPlot == "bxlumis") oneDHists_.at(currentChannelIndex).at(histoName)->Fill(bxlumis->size(),scaleFactor);
847 <      else if(objectToPlot == "photons") oneDHists_.at(currentChannelIndex).at(histoName)->Fill(photons->size(),scaleFactor);
848 <      else if(objectToPlot == "superclusters") oneDHists_.at(currentChannelIndex).at(histoName)->Fill(superclusters->size(),scaleFactor);
849 <      else if(objectToPlot == "primaryvertexs"){
850 <        oneDHists_.at(currentChannelIndex).at(histoName+"BeforePileupCorrection")->Fill(primaryvertexs->size());
851 <        oneDHists_.at(currentChannelIndex).at(histoName+"AfterPileupCorrection")->Fill(primaryvertexs->size(),scaleFactor);
852 <      }
1250 >    (*channelDecisions)[currentChannel.name] = eventPassedAllCuts;
1251  
1252 <    } // end for (uint currentObjectIndex = 0; currentObjectIndex != objectsToPlot.size(); currentObjectIndex++){
1252 >  } // end loop over channel
1253  
1254 <  } //end loop over channel
1254 >  masterCutFlow_->fillCutFlow(masterScaleFactor);
1255  
1256 <  masterCutFlow_->fillCutFlow(scaleFactor);
1256 >  event.put (channelDecisions, "channelDecisions");
1257  
1258   } // end void OSUAnalysis::analyze (const edm::Event &event, const edm::EventSetup &setup)
1259  
# Line 872 | Line 1270 | OSUAnalysis::evaluateComparison (double
1270    else if(comparison == "==") return testValue == cutValue;
1271    else if(comparison == "=") return testValue == cutValue;
1272    else if(comparison == "!=") return testValue != cutValue;
1273 <  else {std::cout << "WARNING: invalid comparison operator '" << comparison << "'\n"; return false;}
1273 >  else {cout << "WARNING: invalid comparison operator '" << comparison << "'\n"; return false;}
1274 >
1275 > }
1276 >
1277 > bool
1278 > OSUAnalysis::evaluateComparison (string testValue, string comparison, string cutValue){
1279 >
1280 >
1281 >  if(comparison == ">")       return testValue >  cutValue;
1282 >  else if(comparison == ">=") return testValue >= cutValue;
1283 >  else if(comparison == "<")  return testValue <  cutValue;
1284 >  else if(comparison == "<=") return testValue <= cutValue;
1285 >  else if(comparison == "==") return testValue == cutValue;
1286 >  else if(comparison == "=") return testValue == cutValue;
1287 >  else if(comparison == "!=") return testValue != cutValue;
1288 >  else {cout << "WARNING: invalid comparison operator '" << comparison << "'\n"; return false;}
1289  
1290   }
1291  
1292   bool
1293 < OSUAnalysis::evaluateTriggers (vector<string> triggersToTest, const BNtriggerCollection* triggerCollection){
1293 > OSUAnalysis::evaluateTriggers (vector<string> triggersToTest, vector<string> triggersToVeto, const BNtriggerCollection* triggerCollection){
1294  
1295 +  //initialize to false until a chosen trigger is passed
1296    bool triggerDecision = false;
1297  
1298 <  for (BNtriggerCollection::const_iterator trigger = triggerCollection->begin (); trigger != triggerCollection->end (); trigger++)
1299 <    {
1300 <      if(trigger->pass != 1) continue;
1301 <      for(uint triggerName = 0; triggerName != triggersToTest.size(); triggerName++)
1302 <        {
1303 <          if(trigger->name.find(triggersToTest.at(triggerName))!=std::string::npos){
1304 <            triggerDecision = true;
1305 <          }
1306 <        }
1298 >  if (printAllTriggers_) cout << "Printing list of all available triggers (which this event may or may not pass):" << endl;
1299 >  //loop over all triggers defined in the event
1300 >  for (BNtriggerCollection::const_iterator trigger = triggerCollection->begin (); trigger != triggerCollection->end (); trigger++){
1301 >
1302 >    if (printAllTriggers_) cout << "   " << trigger->name << endl;
1303 >
1304 >    //we're only interested in triggers that actually passed
1305 >    if(trigger->pass != 1) continue;
1306 >
1307 >    //if the event passes one of the veto triggers, exit and return false
1308 >    for(uint triggerName = 0; triggerName != triggersToVeto.size(); triggerName++){
1309 >      if(trigger->name.find(triggersToVeto.at(triggerName))!=string::npos) return false;
1310      }
1311 <  return triggerDecision;
1311 >    //if the event passes one of the chosen triggers, set triggerDecision to true
1312 >    for(uint triggerName = 0; triggerName != triggersToTest.size(); triggerName++){
1313 >      if(trigger->name.find(triggersToTest.at(triggerName))!=string::npos) triggerDecision = true;
1314 >    }
1315 >  }
1316 >
1317 >  printAllTriggers_ = false;  // only print triggers once, not every event
1318  
1319 +  //if none of the veto triggers fired:
1320 +  //return the OR of all the chosen triggers
1321 +  if (triggersToTest.size() != 0) return triggerDecision;
1322 +  //or if no triggers were defined return true
1323 +  else return true;
1324   }
1325  
1326 < std::vector<std::string>
1326 >
1327 > vector<string>
1328   OSUAnalysis::splitString (string inputString){
1329  
1330 <  std::stringstream stringStream(inputString);
1331 <  std::istream_iterator<std::string> begin(stringStream);
1332 <  std::istream_iterator<std::string> end;
1333 <  std::vector<std::string> stringVector(begin, end);
1330 >  stringstream stringStream(inputString);
1331 >  istream_iterator<string> begin(stringStream);
1332 >  istream_iterator<string> end;
1333 >  vector<string> stringVector(begin, end);
1334    return stringVector;
1335  
1336   }
1337  
1338  
1339   void OSUAnalysis::getTwoObjs(string tempInputCollection, string& obj1, string& obj2) {
1340 <  // Set two object strings from the tempInputCollection string,
1341 <  // For example, if tempInputCollection is "electron-muon pairs",
1342 <  // then obj1 = "electrons" and obj2 = "muons".  
1343 <  // Note that the objects have an "s" appended.  
1340 >  // Set two object strings from the tempInputCollection string,
1341 >  // For example, if tempInputCollection is "electron-muon pairs",
1342 >  // then obj1 = "electrons" and obj2 = "muons".
1343 >  // Note that the objects have an "s" appended.
1344  
1345    int dashIndex = tempInputCollection.find("-");
1346    int spaceIndex = tempInputCollection.find_last_of(" ");
1347    int secondWordLength = spaceIndex - dashIndex;
1348 <  obj1 = tempInputCollection.substr(0,dashIndex) + "s";  
1348 >  obj1 = tempInputCollection.substr(0,dashIndex) + "s";
1349    obj2 = tempInputCollection.substr(dashIndex+1,secondWordLength-1)+"s";
1350 <  
1351 < }
1350 >
1351 > }
1352  
1353  
1354   string OSUAnalysis::getObjToGet(string obj) {
1355    // Return the string corresponding to the object to get for the given obj string.
1356 <  // Right now this only handles the case in which obj contains "secondary",
1357 <  // e.g, "secondary muons".  
1358 <  // Note that "s" is NOT appended.  
930 <  
931 <  if (obj.find("secondary")==std::string::npos) return obj;  // "secondary" is not found  
932 <  int firstSpaceIndex = obj.find_first_of(" ");  
933 <  return obj.substr(firstSpaceIndex+1,obj.length()-1);
1356 >  // Right now this only handles the case in which obj contains "secondary",
1357 >  // e.g, "secondary muons".
1358 >  // Note that "s" is NOT appended.
1359  
1360 < }  
1360 >  if (obj.find("secondary")==string::npos) return obj;  // "secondary" is not found
1361 >  int firstSpaceIndex = obj.find_first_of(" ");
1362 >  return obj.substr(firstSpaceIndex+1,obj.length()-1);
1363  
1364 + }
1365  
1366  
1367 + //!jet valueLookup
1368   double
1369 < OSUAnalysis::valueLookup (const BNjet* object, string variable, string function){
1369 > OSUAnalysis::valueLookup (const BNjet* object, string variable, string function, string &stringValue){
1370  
1371    double value = 0.0;
1372    if(variable == "energy") value = object->energy;
# Line 1056 | Line 1485 | OSUAnalysis::valueLookup (const BNjet* o
1485    else if(variable == "puJetId_loose_simple") value = object->puJetId_loose_simple;
1486    else if(variable == "puJetId_loose_cutbased") value = object->puJetId_loose_cutbased;
1487  
1488 +  //user defined variable
1489 +  else if(variable == "disappTrkLeadingJetID") {
1490 +    value = object->pt > 110
1491 +      && fabs(object->eta) < 2.4
1492 +      && object->chargedHadronEnergyFraction > 0.2
1493 +      && object->neutralHadronEnergyFraction < 0.7
1494 +      && object->chargedEmEnergyFraction < 0.5
1495 +      && object->neutralEmEnergyFraction < 0.7;
1496 +  }
1497 +
1498 +  else if(variable == "disappTrkSubLeadingJetID") {
1499 +    value = object->pt > 30
1500 +      && fabs(object->eta) < 4.5
1501 +      && object->neutralHadronEnergyFraction < 0.7
1502 +      && object->chargedEmEnergyFraction < 0.5;
1503 +  }
1504  
1505 <  else{std::cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
1505 >
1506 >  else{cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
1507  
1508    value = applyFunction(function, value);
1509  
# Line 1065 | Line 1511 | OSUAnalysis::valueLookup (const BNjet* o
1511   }
1512  
1513  
1514 <
1514 > //!muon valueLookup
1515   double
1516 < OSUAnalysis::valueLookup (const BNmuon* object, string variable, string function){
1516 > OSUAnalysis::valueLookup (const BNmuon* object, string variable, string function, string &stringValue){
1517  
1518    double value = 0.0;
1519    if(variable == "energy") value = object->energy;
# Line 1222 | Line 1668 | OSUAnalysis::valueLookup (const BNmuon*
1668    else if(variable == "time_ndof") value = object->time_ndof;
1669  
1670    //user-defined variables
1671 +  else if(variable == "looseID") {
1672 +    value = object->pt > 10
1673 +      && object->isGlobalMuon > 0
1674 +      && object->isTrackerMuon > 0;
1675 +      }
1676    else if(variable == "correctedD0VertexErr") value =  hypot (object->tkD0err, hypot (chosenVertex ()->xError, chosenVertex ()->yError));
1677    else if(variable == "correctedD0VertexSig") value =  object->correctedD0Vertex / hypot (object->tkD0err, hypot (chosenVertex ()->xError, chosenVertex ()->yError));
1678    else if(variable == "detIso") value = (object->trackIsoDR03) / object->pt;
1679    else if(variable == "relPFdBetaIso") value = (object->pfIsoR04SumChargedHadronPt + max(0.0, object->pfIsoR04SumNeutralHadronEt + object->pfIsoR04SumPhotonEt - 0.5*object->pfIsoR04SumPUPt)) / object->pt;
1680    else if(variable == "relPFrhoIso") value = ( object->chargedHadronIso + max(0.0, object->neutralHadronIso + object->photonIso - object->AEffDr03*object->rhoPrime) ) / object->pt;
1681    else if(variable == "metMT") {
1682 <    const BNmet *met = chosenMET ();
1232 <    if (met)
1682 >    if (const BNmet *met = chosenMET ())
1683        {
1684 <        TLorentzVector p1 (object->px, object->py, object->pz, object->energy),
1685 <          p2 (met->px, met->py, 0.0, met->pt);
1236 <
1237 <        value = (p1 + p2).Mt ();
1684 >        double dPhi = deltaPhi (object->phi, met->phi);
1685 >        value = sqrt (2 * object->pt * met->pt * (1 - cos (dPhi)));
1686        }
1687      else
1688        value = -999;
# Line 1352 | Line 1800 | OSUAnalysis::valueLookup (const BNmuon*
1800      value = object->isGlobalMuon > 0                \
1801        && object->isPFMuon > 0                        \
1802        && object->normalizedChi2 < 10                \
1803 <                                  && object->numberOfValidMuonHits > 0        \
1803 >      && object->numberOfValidMuonHits > 0        \
1804        && object->numberOfMatchedStations > 1        \
1805        && fabs(object->correctedD0Vertex) < 0.2        \
1806        && fabs(object->correctedDZ) < 0.5        \
# Line 1361 | Line 1809 | OSUAnalysis::valueLookup (const BNmuon*
1809    }
1810    else if(variable == "tightIDdisplaced"){
1811      value = object->isGlobalMuon > 0                \
1812 +      && object->isPFMuon > 0                        \
1813        && object->normalizedChi2 < 10                \
1814 <                                  && object->numberOfValidMuonHits > 0        \
1814 >      && object->numberOfValidMuonHits > 0        \
1815        && object->numberOfMatchedStations > 1        \
1816        && object->numberOfValidPixelHits > 0        \
1817        && object->numberOfLayersWithMeasurement > 5;
1818    }
1819  
1820 <  else if(variable == "genDeltaRLowest") value = getGenDeltaRLowest(object);
1820 >  else if(variable == "genDeltaRLowest") value = getGenDeltaRLowest(object);
1821  
1822    else if(variable == "genMatchedPdgId"){
1823      int index = getGenMatchedParticleIndex(object);
# Line 1388 | Line 1837 | OSUAnalysis::valueLookup (const BNmuon*
1837    }
1838    else if(variable == "genMatchedMotherIdReverse"){
1839      int index = getGenMatchedParticleIndex(object);
1840 <    if(index == -1) value = 23;
1841 <    else value = 23 -getPdgIdBinValue(mcparticles->at(index).motherId);
1840 >    if(index == -1) value = 24;
1841 >    else value = 24 - getPdgIdBinValue(mcparticles->at(index).motherId);
1842    }
1843    else if(variable == "genMatchedGrandmotherId"){
1844      int index = getGenMatchedParticleIndex(object);
# Line 1401 | Line 1850 | OSUAnalysis::valueLookup (const BNmuon*
1850      }
1851      else value = getPdgIdBinValue(mcparticles->at(index).grandMotherId);
1852    }
1853 +  else if(variable == "genMatchedGrandmotherIdReverse"){
1854 +    int index = getGenMatchedParticleIndex(object);
1855 +    if(index == -1) value = 24;
1856 +    else if(fabs(mcparticles->at(index).motherId) == 15){
1857 +      int motherIndex = findTauMotherIndex(&mcparticles->at(index));
1858 +      if(motherIndex == -1) value = 24;
1859 +      else value = 24 - getPdgIdBinValue(mcparticles->at(motherIndex).motherId);
1860 +    }
1861 +    else value = 24 - getPdgIdBinValue(mcparticles->at(index).grandMotherId);
1862 +  }
1863 +  else if(variable == "pfMuonsFromVertex"){
1864 +    double d0Error, dzError;
1865  
1866 +    d0Error = hypot (object->tkD0err, hypot (chosenVertex ()->xError, chosenVertex ()->yError));
1867 +    dzError = hypot (object->tkDZerr, chosenVertex ()->zError);
1868 +    value = fabs (object->correctedD0Vertex) > 0.2 || fabs (object->correctedDZ) > 0.5
1869 +      || fabs (object->correctedD0Vertex / d0Error) > 99.0
1870 +      || fabs (object->correctedDZ / dzError) > 99.0;
1871 +    value = (object->isStandAloneMuon && !object->isTrackerMuon && !object->isGlobalMuon) || !value;
1872 +  }
1873  
1874  
1875 <  else{std::cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
1875 >
1876 >  else{cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
1877  
1878    value = applyFunction(function, value);
1879  
1880    return value;
1881   }
1882  
1883 <
1883 > //!electron valueLookup
1884   double
1885 < OSUAnalysis::valueLookup (const BNelectron* object, string variable, string function){
1885 > OSUAnalysis::valueLookup (const BNelectron* object, string variable, string function, string &stringValue){
1886  
1887    double value = 0.0;
1888    if(variable == "energy") value = object->energy;
# Line 1579 | Line 2048 | OSUAnalysis::valueLookup (const BNelectr
2048    else if(variable == "detIso") value = (object->trackIso) / object->pt;
2049    else if(variable == "relPFrhoIso") value = ( object->chargedHadronIsoDR03 + max(0.0, object->neutralHadronIsoDR03 + object->photonIsoDR03 - object->AEffDr03*object->rhoPrime) ) / object->pt;
2050    else if(variable == "metMT") {
2051 <    const BNmet *met = chosenMET ();
1583 <    if (met)
2051 >    if (const BNmet *met = chosenMET ())
2052        {
2053 <        TLorentzVector p1 (object->px, object->py, object->pz, object->energy),
2054 <          p2 (met->px, met->py, 0.0, met->pt);
1587 <
1588 <        value = (p1 + p2).Mt ();
2053 >        double dPhi = deltaPhi (object->phi, met->phi);
2054 >        value = sqrt (2 * object->pt * met->pt * (1 - cos (dPhi)));
2055        }
2056      else
2057        value = -999;
# Line 1677 | Line 2143 | OSUAnalysis::valueLookup (const BNelectr
2143        }
2144    }
2145  
2146 +  else if(variable == "looseID"){
2147 +    value = object->pt > 10
2148 +      && object->mvaNonTrigV0 > 0;
2149 +      }
2150    else if(variable == "correctedD0VertexInEBPositiveCharge"){
2151      if(fabs(object->eta) < 0.8 && object->charge > 0) value = object->correctedD0Vertex;
2152      else value = -999;
# Line 1750 | Line 2220 | OSUAnalysis::valueLookup (const BNelectr
2220    }
2221  
2222  
2223 <  else if(variable == "genDeltaRLowest") value = getGenDeltaRLowest(object);
2223 >  else if(variable == "genDeltaRLowest") value = getGenDeltaRLowest(object);
2224  
2225    else if(variable == "genMatchedPdgId"){
2226      int index = getGenMatchedParticleIndex(object);
# Line 1771 | Line 2241 | OSUAnalysis::valueLookup (const BNelectr
2241    }
2242    else if(variable == "genMatchedMotherIdReverse"){
2243      int index = getGenMatchedParticleIndex(object);
2244 <    if(index == -1) value = 23;
2245 <    else value = 23 -getPdgIdBinValue(mcparticles->at(index).motherId);
2244 >    if(index == -1) value = 24;
2245 >    else value = 24 -getPdgIdBinValue(mcparticles->at(index).motherId);
2246    }
2247    else if(variable == "genMatchedGrandmotherId"){
2248      int index = getGenMatchedParticleIndex(object);
# Line 1784 | Line 2254 | OSUAnalysis::valueLookup (const BNelectr
2254      }
2255      else value = getPdgIdBinValue(mcparticles->at(index).grandMotherId);
2256    }
2257 +  else if(variable == "genMatchedGrandmotherIdReverse"){
2258 +    int index = getGenMatchedParticleIndex(object);
2259 +    if(index == -1) value = 24;
2260 +    else if(fabs(mcparticles->at(index).motherId) == 15){
2261 +      int motherIndex = findTauMotherIndex(&mcparticles->at(index));
2262 +      if(motherIndex == -1) value = 24;
2263 +      else value = 24 - getPdgIdBinValue(mcparticles->at(motherIndex).motherId);
2264 +    }
2265 +    else value = 24 - getPdgIdBinValue(mcparticles->at(index).grandMotherId);
2266 +  }
2267 +  else if(variable == "pfElectronsFromVertex"){
2268 +    double d0Error, dzError;
2269 +
2270 +    d0Error = hypot (object->tkD0err, hypot (chosenVertex ()->xError, chosenVertex ()->yError));
2271 +    dzError = hypot (object->tkDZerr, chosenVertex ()->zError);
2272 +    value = fabs (object->correctedD0Vertex) > 0.2 || fabs (object->correctedDZ) > 0.5
2273 +      || fabs (object->correctedD0Vertex / d0Error) > 99.0
2274 +      || fabs (object->correctedDZ / dzError) > 99.0;
2275 +    value = !value;
2276 +  }
2277  
2278  
2279  
2280 <  else{std::cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
2280 >  else{cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
2281  
2282    value = applyFunction(function, value);
2283  
2284    return value;
2285   }
2286  
2287 <
2287 > //!event valueLookup
2288   double
2289 < OSUAnalysis::valueLookup (const BNevent* object, string variable, string function){
2289 > OSUAnalysis::valueLookup (const BNevent* object, string variable, string function, string &stringValue){
2290  
2291    double value = 0.0;
2292  
# Line 1865 | Line 2355 | OSUAnalysis::valueLookup (const BNevent*
2355    else if(variable == "id2") value = object->id2;
2356    else if(variable == "evt") value = object->evt;
2357    else if(variable == "puScaleFactor"){
2358 <    if(datasetType_ != "data")
2358 >    if(doPileupReweighting_ && datasetType_ != "data")
2359        value = puWeight_->at (events->at (0).numTruePV);
2360      else
2361        value = 1.0;
2362    }
2363 <  else if(variable == "muonScaleFactor"){
2364 <    if(datasetType_ != "data")
2365 <      //      value = muonSFWeight_->at (chosenMuon ()->eta);
2366 <      value = 1.0;
2367 <    else
1878 <      value = 1.0;
1879 <  }
1880 <  else if(variable == "electronScaleFactor"){
1881 <    if(datasetType_ != "data")
1882 <      //      value = electronSFWeight_->at (chosenElectron ()->eta, chosenElectron ()->pt);
1883 <      value = 1.0;
1884 <    else
1885 <      value = 1.0;
1886 <  }
1887 <  else if(variable == "cTauScaleFactor")
1888 <    value = cTauScaleFactor_;
1889 <
1890 <  else{std::cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
2363 >  else if(variable == "muonScaleFactor") value = muonScaleFactor_;
2364 >  else if(variable == "electronScaleFactor") value = electronScaleFactor_;
2365 >  else if(variable == "stopCTauScaleFactor") value = stopCTauScaleFactor_;
2366 >  else if(variable == "bTagScaleFactor") value = bTagScaleFactor_;
2367 >  else{cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
2368  
2369    value = applyFunction(function, value);
2370  
2371    return value;
2372   }
2373  
2374 + //!tau valueLookup
2375   double
2376 < OSUAnalysis::valueLookup (const BNtau* object, string variable, string function){
2376 > OSUAnalysis::valueLookup (const BNtau* object, string variable, string function, string &stringValue){
2377  
2378    double value = 0.0;
2379  
# Line 1939 | Line 2417 | OSUAnalysis::valueLookup (const BNtau* o
2417    else if(variable == "HPSdecayModeFinding") value = object->HPSdecayModeFinding;
2418    else if(variable == "leadingTrackValid") value = object->leadingTrackValid;
2419  
2420 +  else if (variable == "looseHadronicID") {
2421 +    value = object->pt > 10
2422 +      && object->eta < 2.3
2423 +      && object->HPSbyLooseCombinedIsolationDeltaBetaCorr > 0
2424 +      && object->HPSdecayModeFinding > 0
2425 +      && object->HPSagainstElectronLoose > 0
2426 +      && object->HPSagainstMuonTight > 0;
2427 +  }
2428  
2429 <
1944 <  else if(variable == "genDeltaRLowest") value = getGenDeltaRLowest(object);
2429 >  else if(variable == "genDeltaRLowest") value = getGenDeltaRLowest(object);
2430  
2431    else if(variable == "genMatchedPdgId"){
2432      int index = getGenMatchedParticleIndex(object);
# Line 1961 | Line 2446 | OSUAnalysis::valueLookup (const BNtau* o
2446    }
2447    else if(variable == "genMatchedMotherIdReverse"){
2448      int index = getGenMatchedParticleIndex(object);
2449 <    if(index == -1) value = 23;
2450 <    else value = 23 -getPdgIdBinValue(mcparticles->at(index).motherId);
2449 >    if(index == -1) value = 24;
2450 >    else value = 24 -getPdgIdBinValue(mcparticles->at(index).motherId);
2451    }
2452    else if(variable == "genMatchedGrandmotherId"){
2453      int index = getGenMatchedParticleIndex(object);
# Line 1974 | Line 2459 | OSUAnalysis::valueLookup (const BNtau* o
2459      }
2460      else value = getPdgIdBinValue(mcparticles->at(index).grandMotherId);
2461    }
2462 +  else if(variable == "genMatchedGrandmotherIdReverse"){
2463 +    int index = getGenMatchedParticleIndex(object);
2464 +    if(index == -1) value = 24;
2465 +    else if(fabs(mcparticles->at(index).motherId) == 15){
2466 +      int motherIndex = findTauMotherIndex(&mcparticles->at(index));
2467 +      if(motherIndex == -1) value = 24;
2468 +      else value = 24 - getPdgIdBinValue(mcparticles->at(motherIndex).motherId);
2469 +    }
2470 +    else value = 24 - getPdgIdBinValue(mcparticles->at(index).grandMotherId);
2471 +  }
2472  
2473  
2474 <  else{std::cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
2474 >  else{cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
2475  
2476    value = applyFunction(function, value);
2477  
2478    return value;
2479   }
2480  
2481 + //!met valueLookup
2482   double
2483 < OSUAnalysis::valueLookup (const BNmet* object, string variable, string function){
2483 > OSUAnalysis::valueLookup (const BNmet* object, string variable, string function, string &stringValue){
2484  
2485    double value = 0.0;
2486  
# Line 2048 | Line 2544 | OSUAnalysis::valueLookup (const BNmet* o
2544    else if(variable == "pfT1jet10pt") value = object->pfT1jet10pt;
2545    else if(variable == "pfT1jet10phi") value = object->pfT1jet10phi;
2546  
2547 <  else{std::cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
2547 >  else{cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
2548  
2549    value = applyFunction(function, value);
2550  
2551    return value;
2552   }
2553  
2554 + //!track valueLookup
2555   double
2556 < OSUAnalysis::valueLookup (const BNtrack* object, string variable, string function){
2556 > OSUAnalysis::valueLookup (const BNtrack* object, string variable, string function, string &stringValue){
2557  
2558    double value = 0.0;
2559    double pMag = sqrt(object->pt * object->pt +
2560 <                     object->pz * object->pz);
2561 <  
2560 >                     object->pz * object->pz);
2561 >
2562    if(variable == "pt") value = object->pt;
2563    else if(variable == "px") value = object->px;
2564    else if(variable == "py") value = object->py;
# Line 2082 | Line 2579 | OSUAnalysis::valueLookup (const BNtrack*
2579  
2580  
2581    //additional BNs info for disappTrks
2085 –  else if(variable == "isGoodPtResolution") value = object->isGoodPtResolution;
2582    else if(variable == "caloEMDeltaRp3") value = object->caloEMDeltaRp3;
2583    else if(variable == "caloHadDeltaRp3") value = object->caloHadDeltaRp3;
2584    else if(variable == "caloEMDeltaRp4") value = object->caloEMDeltaRp4;
2585    else if(variable == "caloHadDeltaRp4") value = object->caloHadDeltaRp4;
2586    else if(variable == "caloEMDeltaRp5") value = object->caloEMDeltaRp5;
2587    else if(variable == "caloHadDeltaRp5") value = object->caloHadDeltaRp5;
2588 +  else if(variable == "nTracksRp5") value = object->nTracksRp5;
2589    else if(variable == "nHitsMissingOuter") value = object->nHitsMissingOuter;
2590    else if(variable == "nHitsMissingInner") value = object->nHitsMissingInner;
2591    else if(variable == "nHitsMissingMiddle") value = object->nHitsMissingMiddle;
2592 <  
2592 >  else if(variable == "depTrkRp5") value = object->depTrkRp5;
2593  
2594    //user defined variables
2595    else if(variable == "d0wrtBS") value = (object->vx-events->at(0).BSx)*object->py/object->pt - (object->vy-events->at(0).BSy)*object->px/object->pt;
2596    else if(variable == "dZwrtBS") value = object->dZ - events->at(0).BSz;
2597 +  else if(variable == "depTrkRp5MinusPt")           value =  (object->depTrkRp5 - object->pt);
2598    else if(variable == "caloTotDeltaRp5")            value =  (object->caloHadDeltaRp5 + object->caloEMDeltaRp5);
2599    else if(variable == "caloTotDeltaRp5ByP")         value = ((object->caloHadDeltaRp5 + object->caloEMDeltaRp5)/pMag);
2600 <  else if(variable == "caloTotDeltaRp5RhoCorr")     value = getTrkCaloTotRhoCorr(object);  
2601 <  else if(variable == "caloTotDeltaRp5ByPRhoCorr")  value = getTrkCaloTotRhoCorr(object) / pMag;  
2600 >  else if(variable == "caloTotDeltaRp5RhoCorr")     value = getTrkCaloTotRhoCorr(object);
2601 >  else if(variable == "caloTotDeltaRp5ByPRhoCorr")  value = getTrkCaloTotRhoCorr(object) / pMag;
2602    else if(variable == "isIso")                      value = getTrkIsIso(object, tracks.product());
2603    else if(variable == "isMatchedDeadEcal")          value = getTrkIsMatchedDeadEcal(object);
2604    else if(variable == "ptErrorByPt")                value = (object->ptError/object->pt);
2605    else if(variable == "ptError")                    value = object->ptError;
2606    else if(variable == "ptRes")                      value = getTrkPtRes(object);
2607 <  else if (variable == "d0wrtPV"){      
2608 <    double vx = object->vx - chosenVertex ()->x,        
2609 <      vy = object->vy - chosenVertex ()->y,      
2610 <      px = object->px,  
2611 <      py = object->py,  
2612 <      pt = object->pt;  
2613 <    value = (-vx * py + vy * px) / pt;  
2614 <  }      
2615 <  else if (variable == "dZwrtPV"){      
2616 <    double vx = object->vx - chosenVertex ()->x,        
2617 <      vy = object->vy - chosenVertex ()->y,      
2618 <      vz = object->vz - chosenVertex ()->z,      
2619 <      px = object->px,  
2620 <      py = object->py,  
2621 <      pz = object->pz,  
2622 <      pt = object->pt;  
2623 <    value = vz - (vx * px + vy * py)/pt * (pz/pt);      
2624 <  }    
2625 <  else if(variable == "genDeltaRLowest") value = getGenDeltaRLowest(object);
2607 >  else if (variable == "d0wrtPV"){
2608 >    double vx = object->vx - chosenVertex ()->x,
2609 >      vy = object->vy - chosenVertex ()->y,
2610 >      px = object->px,
2611 >      py = object->py,
2612 >      pt = object->pt;
2613 >    value = (-vx * py + vy * px) / pt;
2614 >  }
2615 >  else if (variable == "dZwrtPV"){
2616 >    double vx = object->vx - chosenVertex ()->x,
2617 >      vy = object->vy - chosenVertex ()->y,
2618 >      vz = object->vz - chosenVertex ()->z,
2619 >      px = object->px,
2620 >      py = object->py,
2621 >      pz = object->pz,
2622 >      pt = object->pt;
2623 >    value = vz - (vx * px + vy * py)/pt * (pz/pt);
2624 >  }
2625 >
2626 >
2627 >  else if(variable == "genDeltaRLowest") value = getGenDeltaRLowest(object);
2628  
2629    else if(variable == "genMatchedPdgId"){
2630      int index = getGenMatchedParticleIndex(object);
# Line 2145 | Line 2645 | OSUAnalysis::valueLookup (const BNtrack*
2645    }
2646    else if(variable == "genMatchedMotherIdReverse"){
2647      int index = getGenMatchedParticleIndex(object);
2648 <    if(index == -1) value = 23;
2649 <    else value = 23 -getPdgIdBinValue(mcparticles->at(index).motherId);
2648 >    if(index == -1) value = 24;
2649 >    else value = 24 -getPdgIdBinValue(mcparticles->at(index).motherId);
2650    }
2651    else if(variable == "genMatchedGrandmotherId"){
2652      int index = getGenMatchedParticleIndex(object);
# Line 2158 | Line 2658 | OSUAnalysis::valueLookup (const BNtrack*
2658      }
2659      else value = getPdgIdBinValue(mcparticles->at(index).grandMotherId);
2660    }
2661 +  else if(variable == "genMatchedGrandmotherIdReverse"){
2662 +    int index = getGenMatchedParticleIndex(object);
2663 +    if(index == -1) value = 24;
2664 +    else if(fabs(mcparticles->at(index).motherId) == 15){
2665 +      int motherIndex = findTauMotherIndex(&mcparticles->at(index));
2666 +      if(motherIndex == -1) value = 24;
2667 +      else value = 24 - getPdgIdBinValue(mcparticles->at(motherIndex).motherId);
2668 +    }
2669 +    else value = 24 - getPdgIdBinValue(mcparticles->at(index).grandMotherId);
2670 +  }
2671  
2672  
2673  
2674 <  else{std::cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
2674 >  else{cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
2675  
2676    value = applyFunction(function, value);
2677  
2678    return value;
2679   }
2680  
2681 + //!genjet valueLookup
2682   double
2683 < OSUAnalysis::valueLookup (const BNgenjet* object, string variable, string function){
2683 > OSUAnalysis::valueLookup (const BNgenjet* object, string variable, string function, string &stringValue){
2684  
2685    double value = 0.0;
2686  
# Line 2189 | Line 2700 | OSUAnalysis::valueLookup (const BNgenjet
2700    else if(variable == "charge") value = object->charge;
2701  
2702  
2703 <  else{std::cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
2703 >  else{cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
2704  
2705    value = applyFunction(function, value);
2706  
2707    return value;
2708   }
2709  
2710 + //!mcparticle valueLookup
2711   double
2712 < OSUAnalysis::valueLookup (const BNmcparticle* object, string variable, string function){
2712 > OSUAnalysis::valueLookup (const BNmcparticle* object, string variable, string function, string &stringValue){
2713  
2714    double value = 0.0;
2715  
# Line 2322 | Line 2834 | OSUAnalysis::valueLookup (const BNmcpart
2834    }
2835  
2836  
2837 <  else{std::cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
2837 >  else{cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
2838  
2839    value = applyFunction(function, value);
2840  
2841    return value;
2842   }
2843  
2844 + //!primaryvertex valueLookup
2845   double
2846 < OSUAnalysis::valueLookup (const BNprimaryvertex* object, string variable, string function){
2846 > OSUAnalysis::valueLookup (const BNprimaryvertex* object, string variable, string function, string &stringValue){
2847  
2848    double value = 0.0;
2849  
# Line 2349 | Line 2862 | OSUAnalysis::valueLookup (const BNprimar
2862    else if(variable == "isGood") value = object->isGood;
2863  
2864  
2865 <  else{std::cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
2865 >  else{cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
2866  
2867    value = applyFunction(function, value);
2868  
2869    return value;
2870   }
2871  
2872 + //!bxlumi valueLookup
2873   double
2874 < OSUAnalysis::valueLookup (const BNbxlumi* object, string variable, string function){
2874 > OSUAnalysis::valueLookup (const BNbxlumi* object, string variable, string function, string &stringValue){
2875  
2876    double value = 0.0;
2877  
# Line 2366 | Line 2880 | OSUAnalysis::valueLookup (const BNbxlumi
2880    else if(variable == "bx_LUMI_now") value = object->bx_LUMI_now;
2881  
2882  
2883 <  else{std::cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
2883 >  else{cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
2884  
2885    value = applyFunction(function, value);
2886  
2887    return value;
2888   }
2889  
2890 + //!photon valueLookup
2891   double
2892 < OSUAnalysis::valueLookup (const BNphoton* object, string variable, string function){
2892 > OSUAnalysis::valueLookup (const BNphoton* object, string variable, string function, string &stringValue){
2893  
2894    double value = 0.0;
2895  
# Line 2449 | Line 2964 | OSUAnalysis::valueLookup (const BNphoton
2964    else if(variable == "seedRecoFlag") value = object->seedRecoFlag;
2965  
2966  
2452 –
2967  
2968 <  else if(variable == "genDeltaRLowest") value = getGenDeltaRLowest(object);
2968 >
2969 >  else if(variable == "genDeltaRLowest") value = getGenDeltaRLowest(object);
2970  
2971    else if(variable == "genMatchedPdgId"){
2972      int index = getGenMatchedParticleIndex(object);
# Line 2473 | Line 2988 | OSUAnalysis::valueLookup (const BNphoton
2988    }
2989    else if(variable == "genMatchedMotherIdReverse"){
2990      int index = getGenMatchedParticleIndex(object);
2991 <    if(index == -1) value = 23;
2992 <    else value = 23 -getPdgIdBinValue(mcparticles->at(index).motherId);
2991 >    if(index == -1) value = 24;
2992 >    else value = 24 -getPdgIdBinValue(mcparticles->at(index).motherId);
2993    }
2994    else if(variable == "genMatchedGrandmotherId"){
2995      int index = getGenMatchedParticleIndex(object);
# Line 2486 | Line 3001 | OSUAnalysis::valueLookup (const BNphoton
3001      }
3002      else value = getPdgIdBinValue(mcparticles->at(index).grandMotherId);
3003    }
3004 +  else if(variable == "genMatchedGrandmotherIdReverse"){
3005 +    int index = getGenMatchedParticleIndex(object);
3006 +    if(index == -1) value = 24;
3007 +    else if(fabs(mcparticles->at(index).motherId) == 15){
3008 +      int motherIndex = findTauMotherIndex(&mcparticles->at(index));
3009 +      if(motherIndex == -1) value = 24;
3010 +      else value = 24 - getPdgIdBinValue(mcparticles->at(motherIndex).motherId);
3011 +    }
3012 +    else value = 24 - getPdgIdBinValue(mcparticles->at(index).grandMotherId);
3013 +  }
3014  
3015  
3016 <  else{std::cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
3016 >  else{cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
3017  
3018    value = applyFunction(function, value);
3019  
3020    return value;
3021   }
3022  
3023 + //!supercluster valueLookup
3024   double
3025 < OSUAnalysis::valueLookup (const BNsupercluster* object, string variable, string function){
3025 > OSUAnalysis::valueLookup (const BNsupercluster* object, string variable, string function, string &stringValue){
3026  
3027    double value = 0.0;
3028  
# Line 2510 | Line 3036 | OSUAnalysis::valueLookup (const BNsuperc
3036    else if(variable == "theta") value = object->theta;
3037  
3038  
3039 <  else{std::cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
3039 >  else{cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
3040  
3041    value = applyFunction(function, value);
3042  
3043    return value;
3044   }
3045  
3046 + //!trigobj valueLookup
3047 + double
3048 + OSUAnalysis::valueLookup (const BNtrigobj* object, string variable, string function, string &stringValue){
3049 +
3050 +  double value = 0.0;
3051 +
3052 +  if(variable == "pt") value = object->pt;
3053 +  else if(variable == "eta") value = object->eta;
3054 +  else if(variable == "phi") value = object->phi;
3055 +  else if(variable == "px") value = object->px;
3056 +  else if(variable == "py") value = object->py;
3057 +  else if(variable == "pz") value = object->pz;
3058 +  else if(variable == "et") value = object->et;
3059 +  else if(variable == "energy") value = object->energy;
3060 +  else if(variable == "etTotal") value = object->etTotal;
3061 +  else if(variable == "id") value = object->id;
3062 +  else if(variable == "charge") value = object->charge;
3063 +  else if(variable == "isIsolated") value = object->isIsolated;
3064 +  else if(variable == "isMip") value = object->isMip;
3065 +  else if(variable == "isForward") value = object->isForward;
3066 +  else if(variable == "isRPC") value = object->isRPC;
3067 +  else if(variable == "bx") value = object->bx;
3068 +  else if(variable == "filter") {
3069 +    if ((stringValue = object->filter) == "")
3070 +      stringValue = "none";  // stringValue should only be empty if value is filled
3071 +  }
3072 +
3073 +  else{cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
3074 +
3075 +  value = applyFunction(function, value);
3076 +
3077 +  return value;
3078 + }
3079  
3080 + //!muon-muon pair valueLookup
3081   double
3082 < OSUAnalysis::valueLookup (const BNmuon* object1, const BNmuon* object2, string variable, string function){
3082 > OSUAnalysis::valueLookup (const BNmuon* object1, const BNmuon* object2, string variable, string function, string &stringValue){
3083  
3084    double value = 0.0;
3085  
# Line 2581 | Line 3141 | OSUAnalysis::valueLookup (const BNmuon*
3141        value = object2->correctedD0;
3142      }
3143  
3144 <  else{std::cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
3144 >  else{cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
3145 >
3146 >  value = applyFunction(function, value);
3147 >
3148 >  return value;
3149 > }
3150 >
3151 > //!muon-photon pair valueLookup
3152 > double
3153 > OSUAnalysis::valueLookup (const BNmuon* object1, const BNphoton* object2, string variable, string function, string &stringValue){
3154 >
3155 >  double value = 0.0;
3156 >
3157 >  if(variable == "deltaPhi") value = fabs(deltaPhi(object1->phi,object2->phi));
3158 >  else if(variable == "deltaEta") value = fabs(object1->eta - object2->eta);
3159 >  else if(variable == "photonEta") value = object2->eta;
3160 >  else if(variable == "muonEta") value = object1->eta;
3161 >  else if(variable == "photonPhi") value = object2->phi;
3162 >  else if(variable == "muonPhi") value = object1->phi;
3163 >  else if(variable == "deltaR") value = deltaR(object1->eta,object1->phi,object2->eta,object2->phi);
3164 >  else if(variable == "photonGenMotherId") value = object2->genMotherId;
3165 >  else if(variable == "muonRelPFdBetaIso") value = (object1->pfIsoR04SumChargedHadronPt + max(0.0, object1->pfIsoR04SumNeutralHadronEt + object1->pfIsoR04SumPhotonEt - 0.5*object1->pfIsoR04SumPUPt)) / object1->pt;
3166 >  else if(variable == "invMass"){
3167 >    TLorentzVector fourVector1(object1->px, object1->py, object1->pz, object1->energy);
3168 >    TLorentzVector fourVector2(object2->px, object2->py, object2->pz, object2->energy);
3169 >    value = (fourVector1 + fourVector2).M();
3170 >  }
3171 >  else if(variable == "pt"){
3172 >    TLorentzVector fourVector1(object1->px, object1->py, object1->pz, object1->energy);
3173 >    TLorentzVector fourVector2(object2->px, object2->py, object2->pz, object2->energy);
3174 >    value = (fourVector1 + fourVector2).Pt();
3175 >  }
3176 >  else if(variable == "threeDAngle")
3177 >    {
3178 >      TVector3 threeVector1(object1->px, object1->py, object1->pz);
3179 >      TVector3 threeVector2(object2->px, object2->py, object2->pz);
3180 >      value = (threeVector1.Angle(threeVector2));
3181 >    }
3182 >  else if(variable == "alpha")
3183 >    {
3184 >      static const double pi = 3.1415926535897932384626433832795028841971693993751058;
3185 >      TVector3 threeVector1(object1->px, object1->py, object1->pz);
3186 >      TVector3 threeVector2(object2->px, object2->py, object2->pz);
3187 >      value = (pi-threeVector1.Angle(threeVector2));
3188 >    }
3189 >  else{cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
3190 >
3191 >  value = applyFunction(function, value);
3192 >
3193 >  return value;
3194 > }
3195 >
3196 > //!electron-photon pair valueLookup
3197 > double
3198 > OSUAnalysis::valueLookup (const BNelectron* object1, const BNphoton* object2, string variable, string function, string &stringValue){
3199 >
3200 >  double value = 0.0;
3201 >
3202 >  if(variable == "deltaPhi") value = fabs(deltaPhi(object1->phi,object2->phi));
3203 >  else if(variable == "deltaEta") value = fabs(object1->eta - object2->eta);
3204 >  else if(variable == "photonEta") value = object2->eta;
3205 >  else if(variable == "electronEta") value = object1->eta;
3206 >  else if(variable == "photonPhi") value = object2->phi;
3207 >  else if(variable == "electronPhi") value = object1->phi;
3208 >  else if(variable == "deltaR") value = deltaR(object1->eta,object1->phi,object2->eta,object2->phi);
3209 >  else if(variable == "photonGenMotherId") value = object2->genMotherId;
3210 >  else if(variable == "electronRelPFrhoIso") value = ( object1->chargedHadronIsoDR03 + max(0.0, object1->neutralHadronIsoDR03 + object1->photonIsoDR03 - object1->AEffDr03*object1->rhoPrime) ) / object1->pt;
3211 >  else if(variable == "invMass"){
3212 >    TLorentzVector fourVector1(object1->px, object1->py, object1->pz, object1->energy);
3213 >    TLorentzVector fourVector2(object2->px, object2->py, object2->pz, object2->energy);
3214 >    value = (fourVector1 + fourVector2).M();
3215 >  }
3216 >  else if(variable == "pt"){
3217 >    TLorentzVector fourVector1(object1->px, object1->py, object1->pz, object1->energy);
3218 >    TLorentzVector fourVector2(object2->px, object2->py, object2->pz, object2->energy);
3219 >    value = (fourVector1 + fourVector2).Pt();
3220 >  }
3221 >  else if(variable == "threeDAngle")
3222 >    {
3223 >      TVector3 threeVector1(object1->px, object1->py, object1->pz);
3224 >      TVector3 threeVector2(object2->px, object2->py, object2->pz);
3225 >      value = (threeVector1.Angle(threeVector2));
3226 >    }
3227 >  else if(variable == "alpha")
3228 >    {
3229 >      static const double pi = 3.1415926535897932384626433832795028841971693993751058;
3230 >      TVector3 threeVector1(object1->px, object1->py, object1->pz);
3231 >      TVector3 threeVector2(object2->px, object2->py, object2->pz);
3232 >      value = (pi-threeVector1.Angle(threeVector2));
3233 >    }
3234 >  else{cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
3235  
3236    value = applyFunction(function, value);
3237  
3238    return value;
3239   }
3240  
3241 + //!electron-electron pair valueLookup
3242   double
3243 < OSUAnalysis::valueLookup (const BNelectron* object1, const BNelectron* object2, string variable, string function){
3243 > OSUAnalysis::valueLookup (const BNelectron* object1, const BNelectron* object2, string variable, string function, string &stringValue){
3244  
3245    double value = 0.0;
3246  
# Line 2636 | Line 3287 | OSUAnalysis::valueLookup (const BNelectr
3287      value = object2->correctedD0;
3288    }
3289  
3290 <  else{std::cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
3290 >  else{cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
3291  
3292    value = applyFunction(function, value);
3293  
3294    return value;
3295   }
3296 <
3296 > //!electron-muon pair valueLookup
3297   double
3298 < OSUAnalysis::valueLookup (const BNelectron* object1, const BNmuon* object2, string variable, string function){
3298 > OSUAnalysis::valueLookup (const BNelectron* object1, const BNmuon* object2, string variable, string function, string &stringValue){
3299  
3300    double value = 0.0;
3301  
# Line 2702 | Line 3353 | OSUAnalysis::valueLookup (const BNelectr
3353    else if(variable == "muonRelPFdBetaIso"){
3354      value = (object2->pfIsoR04SumChargedHadronPt + max(0.0, object2->pfIsoR04SumNeutralHadronEt + object2->pfIsoR04SumPhotonEt - 0.5*object2->pfIsoR04SumPUPt)) / object2->pt;
3355    }
3356 +  else{cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
3357 +  value = applyFunction(function, value);
3358  
3359 <  else{std::cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
3359 >  return value;
3360 > }
3361 >
3362 > //!electron-jet pair valueLookup
3363 > double
3364 > OSUAnalysis::valueLookup (const BNelectron* object1, const BNjet* object2, string variable, string function, string &stringValue){
3365 >
3366 >  double value = 0.0;
3367 >
3368 >  if(variable == "deltaPhi") value = fabs(deltaPhi(object1->phi,object2->phi));
3369 >  else if(variable == "deltaEta") value = fabs(object1->eta - object2->eta);
3370 >  else if(variable == "jetEta") value = object2->eta;
3371 >  else if(variable == "jetPhi") value = object2->phi;
3372 >  else if(variable == "electronEta") value = object1->eta;
3373 >  else if(variable == "electronPhi") value = object1->phi;
3374 >  else if(variable == "deltaR") value = deltaR(object1->eta,object1->phi,object2->eta,object2->phi);
3375 >  else if(variable == "invMass"){
3376 >    TLorentzVector fourVector1(object1->px, object1->py, object1->pz, object1->energy);
3377 >    TLorentzVector fourVector2(object2->px, object2->py, object2->pz, object2->energy);
3378 >    value = (fourVector1 + fourVector2).M();
3379 >  }
3380 >  else if(variable == "pt"){
3381 >    TLorentzVector fourVector1(object1->px, object1->py, object1->pz, object1->energy);
3382 >    TLorentzVector fourVector2(object2->px, object2->py, object2->pz, object2->energy);
3383 >    value = (fourVector1 + fourVector2).Pt();
3384 >  }
3385 >  else if(variable == "threeDAngle")
3386 >    {
3387 >      TVector3 threeVector1(object1->px, object1->py, object1->pz);
3388 >      TVector3 threeVector2(object2->px, object2->py, object2->pz);
3389 >      value = (threeVector1.Angle(threeVector2));
3390 >    }
3391 >  else if(variable == "chargeProduct"){
3392 >    value = object1->charge*object2->charge;
3393 >  }
3394 >
3395 >  else{cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
3396 >  value = applyFunction(function, value);
3397 >
3398 >  return value;
3399 > }
3400 >
3401 > //!photon-jet pair valueLookup
3402 > double
3403 > OSUAnalysis::valueLookup (const BNphoton* object1, const BNjet* object2, string variable, string function, string &stringValue){
3404 >
3405 >  double value = 0.0;
3406 >
3407 >  if(variable == "deltaPhi") value = fabs(deltaPhi(object1->phi,object2->phi));
3408 >  else if(variable == "deltaEta") value = fabs(object1->eta - object2->eta);
3409 >  else if(variable == "jetEta") value = object2->eta;
3410 >  else if(variable == "jetPhi") value = object2->phi;
3411 >  else if(variable == "photonEta") value = object1->eta;
3412 >  else if(variable == "photonPhi") value = object1->phi;
3413 >  else if(variable == "photonGenMotherId") value = object1->genMotherId;
3414 >  else if(variable == "deltaR") value = deltaR(object1->eta,object1->phi,object2->eta,object2->phi);
3415 >  else if(variable == "invMass"){
3416 >    TLorentzVector fourVector1(object1->px, object1->py, object1->pz, object1->energy);
3417 >    TLorentzVector fourVector2(object2->px, object2->py, object2->pz, object2->energy);
3418 >    value = (fourVector1 + fourVector2).M();
3419 >  }
3420 >  else if(variable == "pt"){
3421 >    TLorentzVector fourVector1(object1->px, object1->py, object1->pz, object1->energy);
3422 >    TLorentzVector fourVector2(object2->px, object2->py, object2->pz, object2->energy);
3423 >    value = (fourVector1 + fourVector2).Pt();
3424 >  }
3425 >  else if(variable == "threeDAngle")
3426 >    {
3427 >      TVector3 threeVector1(object1->px, object1->py, object1->pz);
3428 >      TVector3 threeVector2(object2->px, object2->py, object2->pz);
3429 >      value = (threeVector1.Angle(threeVector2));
3430 >    }
3431 >  else{cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
3432 >  value = applyFunction(function, value);
3433 >
3434 >  return value;
3435 > }
3436 >
3437 > //!muon-jet pair valueLookup
3438 > double
3439 > OSUAnalysis::valueLookup (const BNmuon* object1, const BNjet* object2, string variable, string function, string &stringValue){
3440 >
3441 >  double value = 0.0;
3442 >
3443 >  if(variable == "deltaPhi") value = fabs(deltaPhi(object1->phi,object2->phi));
3444 >  else if(variable == "jetEta") value = object2->eta;
3445 >  else if(variable == "jetPhi") value = object2->phi;
3446 >  else if(variable == "muonEta") value = object1->eta;
3447 >  else if(variable == "muonPhi") value = object1->phi;
3448 >  else if(variable == "deltaEta") value = fabs(object1->eta - object2->eta);
3449 >  else if(variable == "deltaR") value = deltaR(object1->eta,object1->phi,object2->eta,object2->phi);
3450 >  else if(variable == "invMass"){
3451 >    TLorentzVector fourVector1(object1->px, object1->py, object1->pz, object1->energy);
3452 >    TLorentzVector fourVector2(object2->px, object2->py, object2->pz, object2->energy);
3453 >    value = (fourVector1 + fourVector2).M();
3454 >  }
3455 >  else if(variable == "pt"){
3456 >    TLorentzVector fourVector1(object1->px, object1->py, object1->pz, object1->energy);
3457 >    TLorentzVector fourVector2(object2->px, object2->py, object2->pz, object2->energy);
3458 >    value = (fourVector1 + fourVector2).Pt();
3459 >  }
3460 >  else if(variable == "threeDAngle")
3461 >    {
3462 >      TVector3 threeVector1(object1->px, object1->py, object1->pz);
3463 >      TVector3 threeVector2(object2->px, object2->py, object2->pz);
3464 >      value = (threeVector1.Angle(threeVector2));
3465 >    }
3466 >  else if(variable == "chargeProduct"){
3467 >    value = object1->charge*object2->charge;
3468 >  }
3469  
3470 +  else{cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
3471    value = applyFunction(function, value);
3472  
3473    return value;
3474   }
3475 + //!jet-jet pair valueLookup
3476 + double
3477 + OSUAnalysis::valueLookup (const BNjet* object1, const BNjet* object2, string variable, string function, string &stringValue){
3478  
3479 +  double value = 0.0;
3480  
3481 < double  
2715 < OSUAnalysis::valueLookup (const BNelectron* object1, const BNtrack* object2, string variable, string function){  
2716 <  double electronMass = 0.000511;        
2717 <  double value = 0.0;    
2718 <  TLorentzVector fourVector1(0, 0, 0, 0);        
2719 <  TLorentzVector fourVector2(0, 0, 0, 0);        
2720 <  if(variable == "deltaPhi") value = fabs(deltaPhi(object1->phi,object2->phi));  
3481 >  if(variable == "deltaPhi") value = fabs(deltaPhi(object1->phi,object2->phi));
3482    else if(variable == "deltaEta") value = fabs(object1->eta - object2->eta);
3483 <  else if(variable == "deltaR") value = deltaR(object1->eta,object1->phi,object2->eta,object2->phi);    
3484 <  else if(variable == "invMass"){        
3485 <    fourVector1.SetPtEtaPhiM(object1->pt, object1->eta, object1->phi, electronMass);    
3486 <    fourVector2.SetPtEtaPhiM(object2->pt, object2->eta, object2->phi, electronMass );    
3487 <        
3488 <    value = (fourVector1 + fourVector2).M();    
3483 >  else if(variable == "absDeltaPt") value = fabs(object1->pt - object2->pt);
3484 >  else if(variable == "deltaR") value = deltaR(object1->eta,object1->phi,object2->eta,object2->phi);
3485 >  else if(variable == "invMass"){
3486 >    TLorentzVector fourVector1(object1->px, object1->py, object1->pz, object1->energy);
3487 >    TLorentzVector fourVector2(object2->px, object2->py, object2->pz, object2->energy);
3488 >    value = (fourVector1 + fourVector2).M();
3489 >  }
3490 >  else if(variable == "pt"){
3491 >    TLorentzVector fourVector1(object1->px, object1->py, object1->pz, object1->energy);
3492 >    TLorentzVector fourVector2(object2->px, object2->py, object2->pz, object2->energy);
3493 >    value = (fourVector1 + fourVector2).Pt();
3494 >  }
3495 >  else if(variable == "threeDAngle")
3496 >    {
3497 >      TVector3 threeVector1(object1->px, object1->py, object1->pz);
3498 >      TVector3 threeVector2(object2->px, object2->py, object2->pz);
3499 >      value = (threeVector1.Angle(threeVector2));
3500 >    }
3501 >  else if(variable == "chargeProduct"){
3502 >    value = object1->charge*object2->charge;
3503    }
3504 <  else{std::cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}  
3505 <  value = applyFunction(function, value);        
3506 <  return value;  
3504 >
3505 >  else{cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
3506 >  value = applyFunction(function, value);
3507 >
3508 >  return value;
3509   }
3510 + //!electron-track pair valueLookup
3511 + double
3512 + OSUAnalysis::valueLookup (const BNelectron* object1, const BNtrack* object2, string variable, string function, string &stringValue){
3513 +  double electronMass = 0.000511;
3514 +  double value = 0.0;
3515 +  TLorentzVector fourVector1(0, 0, 0, 0);
3516 +  TLorentzVector fourVector2(0, 0, 0, 0);
3517 +  if(variable == "deltaPhi") value = fabs(deltaPhi(object1->phi,object2->phi));
3518 +  else if(variable == "deltaEta") value = fabs(object1->eta - object2->eta);
3519 +  else if(variable == "deltaR") value = deltaR(object1->eta,object1->phi,object2->eta,object2->phi);
3520 +  else if(variable == "invMass"){
3521 +    fourVector1.SetPtEtaPhiM(object1->pt, object1->eta, object1->phi, electronMass);
3522 +    fourVector2.SetPtEtaPhiM(object2->pt, object2->eta, object2->phi, electronMass );
3523  
3524 +    value = (fourVector1 + fourVector2).M();
3525 +  }
3526 +  else if(variable == "chargeProduct"){
3527 +    value = object1->charge*object2->charge;
3528 +  }
3529 +  else{std::cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
3530 +  value = applyFunction(function, value);
3531 +  return value;
3532 +
3533 + }
3534  
3535  
3536 + //!muon-track pair valueLookup
3537   double
3538 < OSUAnalysis::valueLookup (const BNmuon* object1, const BNtrack* object2, string variable, string function){
3538 > OSUAnalysis::valueLookup (const BNmuon* object1, const BNtrack* object2, string variable, string function, string &stringValue){
3539    double pionMass = 0.140;
3540    double muonMass = 0.106;
3541    double value = 0.0;
# Line 2749 | Line 3550 | OSUAnalysis::valueLookup (const BNmuon*
3550  
3551      value = (fourVector1 + fourVector2).M();
3552    }
3553 +  else if(variable == "chargeProduct"){
3554 +    value = object1->charge*object2->charge;
3555 +  }
3556  
3557    else{std::cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
3558    value = applyFunction(function, value);
3559    return value;
3560   }
3561  
3562 <
3562 > //!tau-tau pair valueLookup
3563   double
3564 < OSUAnalysis::valueLookup (const BNtau* object1, const BNtau* object2, string variable, string function){
3564 > OSUAnalysis::valueLookup (const BNtau* object1, const BNtau* object2, string variable, string function, string &stringValue){
3565    double value = 0.0;
3566    if(variable == "deltaPhi") value = fabs(deltaPhi(object1->phi,object2->phi));
3567    else if(variable == "deltaEta") value = fabs(object1->eta - object2->eta);
# Line 2768 | Line 3572 | OSUAnalysis::valueLookup (const BNtau* o
3572      value = (fourVector1 + fourVector2).M();
3573    }
3574  
3575 +  else if(variable == "chargeProduct"){
3576 +    value = object1->charge*object2->charge;
3577 +  }
3578 +
3579    else{std::cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
3580    value = applyFunction(function, value);
3581    return value;
3582   }
3583  
3584 <
3584 > //!muon-tau pair valueLookup
3585   double
3586 < OSUAnalysis::valueLookup (const BNmuon* object1, const BNtau* object2, string variable, string function){
3586 > OSUAnalysis::valueLookup (const BNmuon* object1, const BNtau* object2, string variable, string function, string &stringValue){
3587    double value = 0.0;
3588    if(variable == "deltaPhi") value = fabs(deltaPhi(object1->phi,object2->phi));
3589    else if(variable == "deltaEta") value = fabs(object1->eta - object2->eta);
# Line 2786 | Line 3594 | OSUAnalysis::valueLookup (const BNmuon*
3594      value = (fourVector1 + fourVector2).M();
3595    }
3596  
3597 +  else if(variable == "chargeProduct"){
3598 +    value = object1->charge*object2->charge;
3599 +  }
3600 +
3601    else{std::cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
3602    value = applyFunction(function, value);
3603    return value;
3604   }
3605  
3606 + //!tau-track pair valueLookup
3607   double
3608 < OSUAnalysis::valueLookup (const BNtau* object1, const BNtrack* object2, string variable, string function){
3608 > OSUAnalysis::valueLookup (const BNtau* object1, const BNtrack* object2, string variable, string function, string &stringValue){
3609    double value = 0.0;
3610    if(variable == "deltaPhi") value = fabs(deltaPhi(object1->phi,object2->phi));
3611    else if(variable == "deltaR") value = deltaR(object1->eta,object1->phi,object2->eta,object2->phi);
3612 +  else if(variable == "chargeProduct"){
3613 +    value = object1->charge*object2->charge;
3614 +  }
3615  
3616    else{std::cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
3617    value = applyFunction(function, value);
# Line 2803 | Line 3619 | OSUAnalysis::valueLookup (const BNtau* o
3619   }
3620  
3621  
3622 <
3622 > //!track-event pair valueLookup
3623   double
3624 < OSUAnalysis::valueLookup (const BNtrack* object1, const BNevent* object2, string variable, string function){
3624 > OSUAnalysis::valueLookup (const BNtrack* object1, const BNevent* object2, string variable, string function, string &stringValue){
3625  
3626    double value = 0.0;
3627    double pMag = sqrt(object1->pt * object1->pt +
3628 <                     object1->pz * object1->pz);  
3628 >                     object1->pz * object1->pz);
3629  
3630    if      (variable == "numPV")                      value = object2->numPV;
3631    else if (variable == "caloTotDeltaRp5")            value =  (object1->caloHadDeltaRp5 + object1->caloEMDeltaRp5);
3632    else if (variable == "caloTotDeltaRp5ByP")         value = ((object1->caloHadDeltaRp5 + object1->caloEMDeltaRp5)/pMag);
3633 <  else if (variable == "caloTotDeltaRp5_RhoCorr")    value = getTrkCaloTotRhoCorr(object1);  
3634 <  else if (variable == "caloTotDeltaRp5ByP_RhoCorr") value = getTrkCaloTotRhoCorr(object1) / pMag;  
3633 >  else if (variable == "caloTotDeltaRp5_RhoCorr")    value = getTrkCaloTotRhoCorr(object1);
3634 >  else if (variable == "caloTotDeltaRp5ByP_RhoCorr") value = getTrkCaloTotRhoCorr(object1) / pMag;
3635 >
3636 >  else { cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999; }
3637 >
3638 >  value = applyFunction(function, value);
3639 >
3640 >  return value;
3641 >
3642 > }
3643 >
3644 > //!electron-trigobj pair valueLookup
3645 > double
3646 > OSUAnalysis::valueLookup (const BNelectron* object1, const BNtrigobj* object2, string variable, string function, string &stringValue){
3647 >
3648 >  double value = 0.0;
3649 >
3650 >  if (variable == "deltaR") value = deltaR(object1->eta,object1->phi,object2->eta,object2->phi);
3651 >  else if (variable == "match"){
3652 >    if (deltaR(object1->eta,object1->phi,object2->eta,object2->phi) < 0.2 && abs(object2->id) == 11)
3653 >      stringValue = object2->filter;
3654 >    else
3655 >      stringValue = "none";
3656 >  }
3657 >
3658 >  else { cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999; }
3659 >
3660 >  value = applyFunction(function, value);
3661 >
3662 >  return value;
3663 >
3664 > }
3665 >
3666 > //!muon-trigobj pair valueLookup
3667 > double
3668 > OSUAnalysis::valueLookup (const BNmuon* object1, const BNtrigobj* object2, string variable, string function, string &stringValue){
3669 >
3670 >  double value = 0.0;
3671 >
3672 >  if (variable == "deltaR") value = deltaR(object1->eta,object1->phi,object2->eta,object2->phi);
3673 >
3674 >  else { cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999; }
3675 >
3676 >  value = applyFunction(function, value);
3677 >
3678 >  return value;
3679 >
3680 > }
3681 >
3682 > //!stop valueLookup
3683 > double
3684 > OSUAnalysis::valueLookup (const BNstop* object, string variable, string function, string &stringValue){
3685 >
3686 >
3687 >  double value = 0.0;
3688 >
3689 >  if(variable == "ctau") value = object->ctau;
3690 >
3691 >  else if (variable == "d0"){
3692 >    double vx = object->vx - chosenVertex ()->x,
3693 >      vy = object->vy - chosenVertex ()->y,
3694 >      px = object->px,
3695 >      py = object->py,
3696 >      pt = object->pt;
3697 >    value = (-vx * py + vy * px) / pt;
3698 >  }
3699 >
3700 >  else if (variable == "dz"){
3701 >    double vx = object->vx - chosenVertex ()->x,
3702 >      vy = object->vy - chosenVertex ()->y,
3703 >      vz = object->vz - chosenVertex ()->z,
3704 >      px = object->px,
3705 >      py = object->py,
3706 >      pz = object->pz,
3707 >      pt = object->pt;
3708 >    value = vz - (vx * px + vy * py)/pt * (pz/pt);
3709 >  }
3710 >
3711 >  else if (variable == "minD0"){
3712 >    double minD0=999;
3713 >    for(BNprimaryvertexCollection::const_iterator vertex = primaryvertexs->begin (); vertex != primaryvertexs->end (); vertex++){
3714 >      double vx = object->vx - vertex->x,
3715 >        vy = object->vy - vertex->y,
3716 >        px = object->px,
3717 >        py = object->py,
3718 >        pt = object->pt;
3719 >      value = (-vx * py + vy * px) / pt;
3720 >      if(abs(value) < abs(minD0)) minD0 = value;
3721 >    }
3722 >    value = minD0;
3723 >  }
3724 >  else if (variable == "minDz"){
3725 >    double minDz=999;
3726 >    for(BNprimaryvertexCollection::const_iterator vertex = primaryvertexs->begin (); vertex != primaryvertexs->end (); vertex++){
3727 >      double vx = object->vx - vertex->x,
3728 >        vy = object->vy - vertex->y,
3729 >        vz = object->vz - vertex->z,
3730 >        px = object->px,
3731 >        py = object->py,
3732 >        pz = object->pz,
3733 >        pt = object->pt;
3734 >      value = vz - (vx * px + vy * py)/pt * (pz/pt);
3735 >      if(abs(value) < abs(minDz)) minDz = value;
3736 >    }
3737 >    value = minDz;
3738 >  }
3739 >  else if(variable == "distToVertex"){
3740 >    value = sqrt((object->vx-chosenVertex()->x)*(object->vx-chosenVertex()->x) + \
3741 >                 (object->vy-chosenVertex()->y)*(object->vy-chosenVertex()->y) + \
3742 >                 (object->vz-chosenVertex()->z)*(object->vz-chosenVertex()->z));
3743 >  }
3744 >  else if (variable == "minDistToVertex"){
3745 >    double minDistToVertex=999;
3746 >    for(BNprimaryvertexCollection::const_iterator vertex = primaryvertexs->begin (); vertex != primaryvertexs->end (); vertex++){
3747 >      value = sqrt((object->vx-vertex->x)*(object->vx-vertex->x) + \
3748 >                   (object->vy-vertex->y)*(object->vy-vertex->y) + \
3749 >                   (object->vz-vertex->z)*(object->vz-vertex->z));
3750 >
3751 >      if(abs(value) < abs(minDistToVertex)) minDistToVertex = value;
3752 >    }
3753 >    value = minDistToVertex;
3754 >  }
3755 >  else if (variable == "distToVertexDifference"){
3756 >    double minDistToVertex=999;
3757 >    for(BNprimaryvertexCollection::const_iterator vertex = primaryvertexs->begin (); vertex != primaryvertexs->end (); vertex++){
3758 >      value = sqrt((object->vx-vertex->x)*(object->vx-vertex->x) + \
3759 >                   (object->vy-vertex->y)*(object->vy-vertex->y) + \
3760 >                   (object->vz-vertex->z)*(object->vz-vertex->z));
3761 >
3762 >      if(abs(value) < abs(minDistToVertex)) minDistToVertex = value;
3763 >    }
3764 >    double distToChosenVertex = sqrt((object->vx-chosenVertex()->x)*(object->vx-chosenVertex()->x) + \
3765 >                                     (object->vy-chosenVertex()->y)*(object->vy-chosenVertex()->y) + \
3766 >                                     (object->vz-chosenVertex()->z)*(object->vz-chosenVertex()->z));
3767 >
3768 >    value = distToChosenVertex - minDistToVertex;
3769 >  }
3770 >
3771 >  else if (variable == "closestVertexRank"){
3772 >    double minDistToVertex=999;
3773 >    int vertex_rank = 0;
3774 >    for(BNprimaryvertexCollection::const_iterator vertex = primaryvertexs->begin (); vertex != primaryvertexs->end (); vertex++){
3775 >      vertex_rank++;
3776 >      int dist = sqrt((object->vx-vertex->x)*(object->vx-vertex->x) + \
3777 >                      (object->vy-vertex->y)*(object->vy-vertex->y) + \
3778 >                      (object->vz-vertex->z)*(object->vz-vertex->z));
3779 >
3780 >      if(abs(dist) < abs(minDistToVertex)){
3781 >        value = vertex_rank;
3782 >        minDistToVertex = dist;
3783 >      }
3784 >    }
3785 >  }
3786 >
3787  
3788 <  else { std::cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999; }
3788 >
3789 >
3790 >  else { cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999; }
3791  
3792    value = applyFunction(function, value);
3793  
3794    return value;
3795  
3796 < }  
3796 > }
3797 >
3798 >
3799 >
3800  
3801   // Calculate the number of tracks in cone of DeltaR<0.5 around track1.
3802   // Return true iff no other tracks are found in this cone.
# Line 2872 | Line 3845 | OSUAnalysis::getTrkPtTrue (const BNtrack
3845  
3846   double
3847   OSUAnalysis::getTrkCaloTotRhoCorr(const BNtrack* track) {
3848 <  // Return the pile-up (rho) corrected isolation energy, i.e., the total calorimeter energy around the candidate track.  
3849 <  if (!useTrackCaloRhoCorr_) return -99;  
3850 <  // if (!rhokt6CaloJetsHandle_) {
3851 <  //   cout << "ERROR [getTrkCaloTotRhoCorr]:  The collection rhokt6CaloJetsHandle is not available!" << endl;  
3852 <  //   return -99;  
3848 >  // Return the pile-up (rho) corrected isolation energy, i.e., the total calorimeter energy around the candidate track.
3849 >  if (!useTrackCaloRhoCorr_) return -99;
3850 >  // if (!rhokt6CaloJetsHandle_) {
3851 >  //   cout << "ERROR [getTrkCaloTotRhoCorr]:  The collection rhokt6CaloJetsHandle is not available!" << endl;
3852 >  //   return -99;
3853    // }
3854 <  double radDeltaRCone = 0.5;  
3855 <  double rhoCorr_kt6CaloJets = *rhokt6CaloJetsHandle_ * TMath::Pi() * pow(radDeltaRCone, 2);  // Define effective area as pi*r^2, where r is radius of DeltaR cone.  
3856 <  double rawCaloTot = track->caloHadDeltaRp5 + track->caloEMDeltaRp5;  
3857 <  double caloTotRhoCorrCalo = TMath::Max(0., rawCaloTot - rhoCorr_kt6CaloJets);  
3858 <  return caloTotRhoCorrCalo;  
3859 <
3854 >  double radDeltaRCone = 0.5;
3855 >  double rhoCorr_kt6CaloJets = *rhokt6CaloJetsHandle_ * TMath::Pi() * pow(radDeltaRCone, 2);  // Define effective area as pi*r^2, where r is radius of DeltaR cone.
3856 >  double rawCaloTot = track->caloHadDeltaRp5 + track->caloEMDeltaRp5;
3857 >  double caloTotRhoCorrCalo = TMath::Max(0., rawCaloTot - rhoCorr_kt6CaloJets);
3858 >  return caloTotRhoCorrCalo;
3859 >
3860   }
3861  
3862  
# Line 2921 | Line 3894 | OSUAnalysis::getTrkIsMatchedDeadEcal (co
3894    double deltaRLowest = 999;
3895    int value = 0;
3896    if (DeadEcalVec.size() == 0) WriteDeadEcal();
3897 <  for(std::vector<DeadEcal>::const_iterator ecal = DeadEcalVec.begin(); ecal != DeadEcalVec.end(); ++ecal){
3897 >  for(vector<DeadEcal>::const_iterator ecal = DeadEcalVec.begin(); ecal != DeadEcalVec.end(); ++ecal){
3898      double eta = ecal->etaEcal;
3899      double phi = ecal->phiEcal;
3900 <    double deltaRtemp = deltaR(eta, track1->eta, phi, track1->phi);
3900 >    double deltaRtemp = deltaR(eta, phi, track1->eta, track1->phi);
3901      if(deltaRtemp < deltaRLowest) deltaRLowest = deltaRtemp;
3902    }
3903    if (deltaRLowest<0.05) {value = 1;}
# Line 2932 | Line 3905 | OSUAnalysis::getTrkIsMatchedDeadEcal (co
3905    return value;
3906   }
3907  
3908 < // Returns the smallest DeltaR between the object and any generated true particle in the event.  
3908 > // Returns the smallest DeltaR between the object and any generated true particle in the event.
3909   template <class InputObject>
3910   double OSUAnalysis::getGenDeltaRLowest(InputObject object){
3911    double genDeltaRLowest = 999.;
# Line 2952 | Line 3925 | OSUAnalysis::applyFunction(string functi
3925    else if(function == "log") value = log10(value);
3926  
3927    else if(function == "") value = value;
3928 <  else{std::cout << "WARNING: invalid function '" << function << "'\n";}
3928 >  else{cout << "WARNING: invalid function '" << function << "'\n";}
3929  
3930    return value;
3931  
# Line 2961 | Line 3934 | OSUAnalysis::applyFunction(string functi
3934  
3935   template <class InputCollection>
3936   void OSUAnalysis::setObjectFlags(cut &currentCut, uint currentCutIndex, flagMap &individualFlags, flagMap &cumulativeFlags, InputCollection inputCollection, string inputType){
3937 <
3938 <  if (currentCut.inputCollection.find("pair")!=std::string::npos)  {
3939 <    string obj1, obj2;
3937 >
3938 >  if (currentCut.inputCollection.find("pair")!=string::npos)  {
3939 >    string obj1, obj2;
3940      getTwoObjs(currentCut.inputCollection, obj1, obj2);
3941      if (inputType==obj1 ||
3942 <        inputType==obj2) {
3942 >        inputType==obj2) {
3943        // Do not add a cut to individualFlags or cumulativeFlags, if the cut is on a paired collection,
3944 <      // and the inputType is a member of the pair.  
3945 <      // The cut will instead be applied when the setObjectFlags() is called for the paired collection.  
3946 <      // For example, if currentCut.inputCollection==electron-muon pairs,
3947 <      // then the flags should not be set here when inputType==muons or inputType==electrons.  
3948 <      return;
3949 <    }  
3950 <  }    
3944 >      // and the inputType is a member of the pair.
3945 >      // The cut will instead be applied when the setObjectFlags() is called for the paired collection.
3946 >      // For example, if currentCut.inputCollection==electron-muon pairs,
3947 >      // then the flags should not be set here when inputType==muons or inputType==electrons.
3948 >      return;
3949 >    }
3950 >  }
3951  
3952    for (uint object = 0; object != inputCollection->size(); object++){
3953  
3954 <    bool decision = true;//object passes if this cut doesn't cut on that type of object
3954 >    bool cutDecision = true;//object passes if this cut doesn't cut on that type of object
3955 >    bool plotDecision = true;
3956  
3957      if(currentCut.inputCollection == inputType){
3958  
3959        vector<bool> subcutDecisions;
3960        for( int subcutIndex = 0; subcutIndex != currentCut.numSubcuts; subcutIndex++){
3961 <        double value = valueLookup(&inputCollection->at(object), currentCut.variables.at(subcutIndex), currentCut.functions.at(subcutIndex));
3962 <        subcutDecisions.push_back(evaluateComparison(value,currentCut.comparativeOperators.at(subcutIndex),currentCut.cutValues.at(subcutIndex)));
3961 >        string stringValue = "";
3962 >        double value = valueLookup(&inputCollection->at(object), currentCut.variables.at(subcutIndex), currentCut.functions.at(subcutIndex), stringValue);
3963 >        if (stringValue == "") subcutDecisions.push_back(evaluateComparison(value,currentCut.comparativeOperators.at(subcutIndex),currentCut.cutValues.at(subcutIndex)));
3964 >        else subcutDecisions.push_back(evaluateComparison(stringValue,currentCut.comparativeOperators.at(subcutIndex),currentCut.cutStringValues.at(subcutIndex)));
3965  
3966        }
3967 <      if(currentCut.numSubcuts == 1) decision = subcutDecisions.at(0);
3967 >      if(currentCut.numSubcuts == 1) cutDecision = subcutDecisions.at(0);
3968        else{
3969          bool tempDecision = true;
3970          for( int subcutIndex = 0;subcutIndex != currentCut.numSubcuts-1; subcutIndex++){
# Line 2997 | Line 3973 | void OSUAnalysis::setObjectFlags(cut &cu
3973            else if(currentCut.logicalOperators.at(subcutIndex) == "|"|| currentCut.logicalOperators.at(subcutIndex) == "||")
3974              tempDecision = subcutDecisions.at(subcutIndex) || subcutDecisions.at(subcutIndex+1);
3975          }
3976 <        decision = tempDecision;
3976 >        cutDecision = tempDecision;
3977        }
3978 +      //invert the cut for plotting if this cut is a veto
3979 +      if(currentCut.isVeto) plotDecision = !cutDecision;
3980 +      else plotDecision = cutDecision;
3981      }
3982  
3983 <    individualFlags.at(inputType).at(currentCutIndex).push_back(decision);
3983 >    //if(cutDecision != plotDecision && currentCut.variables.at(0) == "pt") cout << "---------------\n" << cutDecision << " " << plotDecision << endl;
3984 >    individualFlags.at(inputType).at(currentCutIndex).push_back(make_pair(cutDecision,plotDecision));
3985  
3986 <    //set flags for objects that pass each cut AND all the previous cuts
3987 <    bool previousCumulativeFlag = true;
3986 >    //set flags for objects that pass this cut AND all the previous cuts
3987 >    bool previousCumulativeCutFlag = true;
3988      for(uint previousCutIndex = 0; previousCutIndex != currentCutIndex; previousCutIndex++){
3989 <      if(previousCumulativeFlag && individualFlags.at(inputType).at(previousCutIndex).at(object)) previousCumulativeFlag = true;
3990 <      else{ previousCumulativeFlag = false; break;}
3989 >      if(previousCumulativeCutFlag && individualFlags.at(inputType).at(previousCutIndex).at(object).first) previousCumulativeCutFlag = true;
3990 >      else{ previousCumulativeCutFlag = false; break;}
3991      }
3992 <    cumulativeFlags.at(inputType).at(currentCutIndex).push_back(previousCumulativeFlag && decision);
3992 >    previousCumulativeCutFlag = previousCumulativeCutFlag && cutDecision;
3993 >    bool previousCumulativePlotFlag = true;
3994 >    for(uint previousCutIndex = 0; previousCutIndex != currentCutIndex; previousCutIndex++){
3995 >      if(previousCumulativePlotFlag && individualFlags.at(inputType).at(previousCutIndex).at(object).second) previousCumulativePlotFlag = true;
3996 >      else{ previousCumulativePlotFlag = false; break;}
3997 >    }
3998 >    previousCumulativePlotFlag = previousCumulativePlotFlag && plotDecision;
3999 >
4000 >    //if(inputType == "muons") cout << previousCumulativeCutFlag << " " << previousCumulativePlotFlag << " " << currentCut.variables.at(0) << "\n---------------\n\n";
4001 >    cumulativeFlags.at(inputType).at(currentCutIndex).push_back(make_pair(previousCumulativeCutFlag,previousCumulativePlotFlag));
4002  
4003    }
4004  
# Line 3018 | Line 4007 | void OSUAnalysis::setObjectFlags(cut &cu
4007  
4008   template <class InputCollection1, class InputCollection2>
4009   void OSUAnalysis::setObjectFlags(cut &currentCut, uint currentCutIndex, flagMap &individualFlags, flagMap &cumulativeFlags, \
4010 <                                 InputCollection1 inputCollection1, InputCollection2 inputCollection2, vector<bool> flags1, vector<bool> flags2, string inputType){
4010 >                                 InputCollection1 inputCollection1, InputCollection2 inputCollection2, flagPair flags1, flagPair flags2, string inputType){
4011  
4012  
4013    bool sameObjects = false;
4014    if(typeid(InputCollection1).name() == typeid(InputCollection2).name()) sameObjects = true;
4015  
4016 <  // Get the strings for the two objects that make up the pair.  
4017 <  string obj1Type, obj2Type;
4016 >  // Get the strings for the two objects that make up the pair.
4017 >  string obj1Type, obj2Type;
4018    getTwoObjs(inputType, obj1Type, obj2Type);
4019    bool isTwoTypesOfObject = true;
4020 <  if (obj1Type==obj2Type) isTwoTypesOfObject = false;  
4020 >  if (obj1Type==obj2Type) isTwoTypesOfObject = false;
4021  
4022 <  // Initialize the flags for individual objects to all be false, if the cut is on the pair.  
4023 <  // Set them to true later, if any paired object passes (in which case both of its constituents should pass).  
4024 <  if (currentCut.inputCollection == inputType) {    
4022 >  // Initialize the flags for individual objects to all be false, if the cut is on the pair.
4023 >  // Set them to true later, if any paired object passes (in which case both of its constituents should pass).
4024 >  if (currentCut.inputCollection == inputType) {
4025      for (uint object1 = 0; object1 != inputCollection1->size(); object1++) {
4026 <      individualFlags.at(obj1Type).at(currentCutIndex).push_back(false);
4027 <      cumulativeFlags.at(obj1Type).at(currentCutIndex).push_back(false);
4026 >      individualFlags.at(obj1Type).at(currentCutIndex).push_back(make_pair(false,false));
4027 >      cumulativeFlags.at(obj1Type).at(currentCutIndex).push_back(make_pair(false,false));
4028      }
4029 <    if (isTwoTypesOfObject) { // Only initialize the second object if it is different from the first.  
4029 >    if (isTwoTypesOfObject) { // Only initialize the second object if it is different from the first.
4030        for (uint object2 = 0; object2 != inputCollection2->size(); object2++)  {
4031 <        individualFlags.at(obj2Type).at(currentCutIndex).push_back(false);
4032 <        cumulativeFlags.at(obj2Type).at(currentCutIndex).push_back(false);
4031 >        individualFlags.at(obj2Type).at(currentCutIndex).push_back(make_pair(false,false));
4032 >        cumulativeFlags.at(obj2Type).at(currentCutIndex).push_back(make_pair(false,false));
4033        }
4034      }
4035    }
4036 <  
4036 >
4037    int counter = 0;
4038  
4039    for (uint object1 = 0; object1 != inputCollection1->size(); object1++){
# Line 3053 | Line 4042 | void OSUAnalysis::setObjectFlags(cut &cu
4042        if(sameObjects && object1 >= object2) continue;//account for duplicate pairs if both collections are the same
4043  
4044  
4045 <      bool decision = true;//object passes if this cut doesn't cut on that type of object
4045 >      bool cutDecision = true;//object passes if this cut doesn't cut on that type of object
4046 >      bool plotDecision = true;
4047  
4048        if(currentCut.inputCollection == inputType){
4049  
4050          vector<bool> subcutDecisions;
4051          for( int subcutIndex = 0; subcutIndex != currentCut.numSubcuts; subcutIndex++){
4052 <          double value = valueLookup(&inputCollection1->at(object1), &inputCollection2->at(object2), currentCut.variables.at(subcutIndex), currentCut.functions.at(subcutIndex));
4053 <          subcutDecisions.push_back(evaluateComparison(value,currentCut.comparativeOperators.at(subcutIndex),currentCut.cutValues.at(subcutIndex)));
4052 >          string stringValue = "";
4053 >          double value = valueLookup(&inputCollection1->at(object1), &inputCollection2->at(object2), currentCut.variables.at(subcutIndex), currentCut.functions.at(subcutIndex), stringValue);
4054 >          if (stringValue == "") subcutDecisions.push_back(evaluateComparison(value,currentCut.comparativeOperators.at(subcutIndex),currentCut.cutValues.at(subcutIndex)));
4055 >          else subcutDecisions.push_back(evaluateComparison(stringValue,currentCut.comparativeOperators.at(subcutIndex),currentCut.cutStringValues.at(subcutIndex)));
4056          }
4057  
4058 <        if(currentCut.numSubcuts == 1) decision = subcutDecisions.at(0);
4058 >        if(currentCut.numSubcuts == 1) cutDecision = subcutDecisions.at(0);
4059          else{
4060            bool tempDecision = subcutDecisions.at(0);
4061            for( int subcutIndex = 1; subcutIndex < currentCut.numSubcuts; subcutIndex++){
# Line 3072 | Line 4064 | void OSUAnalysis::setObjectFlags(cut &cu
4064              else if(currentCut.logicalOperators.at(subcutIndex-1) == "|"|| currentCut.logicalOperators.at(subcutIndex-1) == "||")
4065                tempDecision = tempDecision || subcutDecisions.at(subcutIndex);
4066            }
4067 <          decision = tempDecision;
4067 >          cutDecision = tempDecision;
4068          }
4069 +        //invert the cut for plotting if this cut is a veto
4070 +        if(currentCut.isVeto) plotDecision = !cutDecision;
4071 +        else plotDecision = cutDecision;
4072 +      }
4073 +      individualFlags.at(inputType).at(currentCutIndex).push_back(make_pair(cutDecision,plotDecision));
4074 +      if (cutDecision && currentCut.inputCollection == inputType) {  // only set the flags for the individual objects if the pair object is being cut on
4075 +        individualFlags.at(obj1Type).at(currentCutIndex).at(object1).first = true;
4076 +        individualFlags.at(obj2Type).at(currentCutIndex).at(object2).first = true;
4077 +      }
4078 +      if (plotDecision && currentCut.inputCollection == inputType) {  // only set the flags for the individual objects if the pair object is being cut on
4079 +        individualFlags.at(obj1Type).at(currentCutIndex).at(object1).second = true;
4080 +        individualFlags.at(obj2Type).at(currentCutIndex).at(object2).second = true;
4081 +      }
4082 +
4083 +      //set flags for objects that pass this cut AND all the previous cuts
4084 +      bool previousCumulativeCutFlag = true;
4085 +      for(uint previousCutIndex = 0; previousCutIndex != currentCutIndex; previousCutIndex++){
4086 +        if(previousCumulativeCutFlag && individualFlags.at(inputType).at(previousCutIndex).at(counter).first) previousCumulativeCutFlag = true;
4087 +        else{ previousCumulativeCutFlag = false; break;}
4088        }
4089 <      // if (decision) isPassObj1.at(object1) = true;
3079 <      // if (decision) isPassObj2.at(object2) = true;
3080 <      individualFlags.at(inputType).at(currentCutIndex).push_back(decision);  
3081 <      if (decision && currentCut.inputCollection == inputType) {  // only set the flags for the individual objects if the pair object is being cut on  
3082 <        individualFlags.at(obj1Type).at(currentCutIndex).at(object1) = true;  
3083 <        individualFlags.at(obj2Type).at(currentCutIndex).at(object2) = true;  
3084 <      }  
4089 >      previousCumulativeCutFlag = previousCumulativeCutFlag && cutDecision;
4090  
4091 <      //set flags for objects that pass each cut AND all the previous cuts
3087 <      bool previousCumulativeFlag = true;
4091 >      bool previousCumulativePlotFlag = true;
4092        for(uint previousCutIndex = 0; previousCutIndex != currentCutIndex; previousCutIndex++){
4093 <        if(previousCumulativeFlag && individualFlags.at(inputType).at(previousCutIndex).at(counter)) previousCumulativeFlag = true;
4094 <        else{ previousCumulativeFlag = false; break;}
4093 >        if(previousCumulativePlotFlag && individualFlags.at(inputType).at(previousCutIndex).at(counter).second) previousCumulativePlotFlag = true;
4094 >        else{ previousCumulativePlotFlag = false; break;}
4095        }
4096 +      previousCumulativePlotFlag = previousCumulativePlotFlag && plotDecision;
4097 +      
4098        //apply flags for the components of the composite object as well
4099 <      bool currentCumulativeFlag = true;
4100 <      if(flags1.size() == 0 && flags2.size() == 0) currentCumulativeFlag = previousCumulativeFlag && decision;
4101 <      else if(flags1.size() == 0) currentCumulativeFlag = previousCumulativeFlag && decision && flags2.at(object2);
4102 <      else if(flags2.size() == 0) currentCumulativeFlag = previousCumulativeFlag && decision && flags1.at(object1);
4103 <      else currentCumulativeFlag = previousCumulativeFlag && decision && flags1.at(object1) && flags2.at(object2);
4104 <      cumulativeFlags.at(inputType).at(currentCutIndex).push_back(currentCumulativeFlag);
4105 <      if (currentCumulativeFlag && currentCut.inputCollection == inputType) {  // only set the flags for the individual objects if the pair object is being cut on  
4106 <        cumulativeFlags.at(obj1Type).at(currentCutIndex).at(object1) = true && getPreviousCumulativeFlags(currentCutIndex, individualFlags, obj1Type, object1);  
4107 <        cumulativeFlags.at(obj2Type).at(currentCutIndex).at(object2) = true && getPreviousCumulativeFlags(currentCutIndex, individualFlags, obj2Type, object2);  
4099 >      bool currentCumulativeCutFlag = true;
4100 >      bool currentCumulativePlotFlag = true;
4101 >
4102 >      if(flags1.size() == 0 && flags2.size() == 0) currentCumulativeCutFlag = previousCumulativeCutFlag;
4103 >      else if(flags1.size() == 0) currentCumulativeCutFlag = previousCumulativeCutFlag && flags2.at(object2).first;
4104 >      else if(flags2.size() == 0) currentCumulativeCutFlag = previousCumulativeCutFlag && flags1.at(object1).first;
4105 >      else currentCumulativeCutFlag = previousCumulativeCutFlag && flags1.at(object1).first && flags2.at(object2).first;
4106 >
4107 >      if(flags1.size() == 0 && flags2.size() == 0) currentCumulativePlotFlag = previousCumulativePlotFlag;
4108 >      else if(flags1.size() == 0) currentCumulativePlotFlag = previousCumulativePlotFlag && flags2.at(object2).second;
4109 >      else if(flags2.size() == 0) currentCumulativePlotFlag = previousCumulativePlotFlag && flags1.at(object1).second;
4110 >      else currentCumulativePlotFlag = previousCumulativePlotFlag && flags1.at(object1).first && flags2.at(object2).second;
4111 >
4112 >      cumulativeFlags.at(inputType).at(currentCutIndex).push_back(make_pair(currentCumulativeCutFlag,currentCumulativePlotFlag));
4113 >
4114 >      if (currentCumulativeCutFlag && currentCut.inputCollection == inputType) {  // only set the flags for the individual objects if the pair object is being cut on
4115 >        cumulativeFlags.at(obj1Type).at(currentCutIndex).at(object1).first = true && getPreviousCumulativeFlags(currentCutIndex, individualFlags, obj1Type, object1, "cut");
4116 >        cumulativeFlags.at(obj2Type).at(currentCutIndex).at(object2).first = true && getPreviousCumulativeFlags(currentCutIndex, individualFlags, obj2Type, object2, "cut");
4117 >      }
4118 >
4119 >      if (currentCumulativePlotFlag && currentCut.inputCollection == inputType) {  // only set the flags for the individual objects if the pair object is being cut on
4120 >        cumulativeFlags.at(obj1Type).at(currentCutIndex).at(object1).second = true && getPreviousCumulativeFlags(currentCutIndex, individualFlags, obj1Type, object1, "plot");
4121 >        cumulativeFlags.at(obj2Type).at(currentCutIndex).at(object2).second = true && getPreviousCumulativeFlags(currentCutIndex, individualFlags, obj2Type, object2, "plot");
4122        }
4123 +
4124        counter++;
4125  
4126 <    } // end   for (uint object2 = 0; object2 != inputCollection2->size(); object2++){
4127 <  }  // end   for (uint object1 = 0; object1 != inputCollection1->size(); object1++){
4126 >    } // end   for (uint object2 = 0; object2 != inputCollection2->size(); object2++)
4127 >  }  // end   for (uint object1 = 0; object1 != inputCollection1->size(); object1++)
4128  
4129   }
4130  
4131  
4132 < bool OSUAnalysis::getPreviousCumulativeFlags(uint currentCutIndex, flagMap &individualFlags, string obj1Type, uint object1) {
4133 <  // Return true iff for the collection obj1Type, the element with index object1 has individal flags set to true for
4134 <  // all cuts up to currentCutIndex  
4135 <  bool previousCumulativeFlag = true;  
4136 <  for (uint previousCutIndex = 0; previousCutIndex < currentCutIndex; previousCutIndex++) {  
4137 <    if (previousCumulativeFlag && individualFlags.at(obj1Type).at(previousCutIndex).at(object1)) previousCumulativeFlag = true;
4138 <    else {  
4139 <      previousCumulativeFlag = false; break;  
4132 > bool OSUAnalysis::getPreviousCumulativeFlags(uint currentCutIndex, flagMap &individualFlags, string obj1Type, uint object1, string flagType) {
4133 >  // Return true iff for the collection obj1Type, the element with index object1 has individal flags set to true for
4134 >  // all cuts up to currentCutIndex
4135 >  bool previousCumulativeFlag = true;
4136 >  for (uint previousCutIndex = 0; previousCutIndex < currentCutIndex; previousCutIndex++) {
4137 >    bool tempFlag = false;
4138 >    if(flagType == "cut") tempFlag = individualFlags.at(obj1Type).at(previousCutIndex).at(object1).first;
4139 >    else if(flagType == "plot") tempFlag = individualFlags.at(obj1Type).at(previousCutIndex).at(object1).second;
4140 >
4141 >    if (previousCumulativeFlag && tempFlag) previousCumulativeFlag = true;
4142 >    else {
4143 >      previousCumulativeFlag = false; break;
4144      }
4145    }
4146 <  return previousCumulativeFlag;  
4147 < }  
4146 >  return previousCumulativeFlag;
4147 > }
4148 >
4149 >
4150 >
4151 >
4152 > template <class InputCollection>
4153 > void OSUAnalysis::assignTreeBranch(BranchSpecs parameters, InputCollection inputCollection, flagPair flags){
4154 >  // This function is similar to fill1DHistogram(), but instead of filling a histogram it assigns a value to a variable for the BNTree
4155 >
4156 >  if (BNTreeBranchVals_.count(parameters.name)==0) cout << "Error[assignTreeBranch]:  trying to assign value to " << parameters.name << " that does not have a branch set up.  Will likely seg fault." << endl;
4157 >  for (uint object = 0; object != inputCollection->size(); object++) {
4158 >
4159 >    if (!plotAllObjectsInPassingEvents_ && !flags.at(object).second) continue;
4160 >
4161 >    string inputVariable = parameters.inputVariable;
4162 >    string function = "";
4163 >    string stringValue = "";
4164 >    double value = valueLookup(&inputCollection->at(object), inputVariable, function, stringValue);
4165 >    BNTreeBranchVals_.at(parameters.name).push_back(value);
4166 >
4167 >  }
4168 > }
4169  
4170  
4171   template <class InputCollection>
4172 < void OSUAnalysis::fill1DHistogram(TH1* histo, histogram parameters, InputCollection inputCollection,vector<bool> flags, double scaleFactor){
4172 > void OSUAnalysis::fill1DHistogram(TH1* histo, histogram parameters, InputCollection inputCollection, flagPair flags, double scaleFactor){
4173 >
4174  
4175    for (uint object = 0; object != inputCollection->size(); object++){
4176  
4177 <    if(!plotAllObjectsInPassingEvents_ && !flags.at(object)) continue;
4177 >    //cout << "flags.at(object).second: " << flags.at(object).second << endl;
4178 >
4179 >    if(!plotAllObjectsInPassingEvents_ && !flags.at(object).second) continue;
4180  
4181      string currentString = parameters.inputVariables.at(0);
4182      string inputVariable = "";
4183      string function = "";
4184 <    if(currentString.find("(")==std::string::npos){
4184 >    if(currentString.find("(")==string::npos){
4185        inputVariable = currentString;// variable to cut on
4186      }
4187      else{
# Line 3141 | Line 4190 | void OSUAnalysis::fill1DHistogram(TH1* h
4190        inputVariable = inputVariable.substr(0,inputVariable.size()-1);//remove trailing ")"
4191      }
4192  
4193 <    double value = valueLookup(&inputCollection->at(object), inputVariable, function);
4193 >    string stringValue = "";
4194 >    double value = valueLookup(&inputCollection->at(object), inputVariable, function, stringValue);
4195      histo->Fill(value,scaleFactor);
4196  
4197      if (printEventInfo_) {
4198 <      // Write information about event to screen, for testing purposes.  
4199 <      cout << "  Info for event:  value for histogram " << histo->GetName() << ":  " << value << endl;  
4198 >      // Write information about event to screen, for testing purposes.
4199 >      cout << "  Info for event:  value for histogram " << histo->GetName() << ":  " << value << endl;
4200      }
4201 <    
4201 >
4202    }
4203   }
4204  
4205   template <class InputCollection1, class InputCollection2>
4206 < void OSUAnalysis::fill1DHistogram(TH1* histo, histogram parameters, InputCollection1 inputCollection1, InputCollection2 inputCollection2, vector<bool> flags1, vector<bool> flags2, vector<bool> pairFlags, double scaleFactor){
4206 > void OSUAnalysis::fill1DHistogram(TH1* histo, histogram parameters, InputCollection1 inputCollection1, InputCollection2 inputCollection2, flagPair flags1, flagPair flags2, flagPair pairFlags, double scaleFactor){
4207  
4208    bool sameObjects = false;
4209    if(typeid(InputCollection1).name() == typeid(InputCollection2).name()) sameObjects = true;
# Line 3166 | Line 4216 | void OSUAnalysis::fill1DHistogram(TH1* h
4216  
4217        pairCounter++;
4218        //only take objects which have passed all cuts and pairs which have passed all cuts
4219 <      if(!plotAllObjectsInPassingEvents_ && !flags1.at(object1)) continue;
4220 <      if(!plotAllObjectsInPassingEvents_ && !flags2.at(object2)) continue;
4221 <      if(!plotAllObjectsInPassingEvents_ && !pairFlags.at(pairCounter)) continue;
4219 >      if(!plotAllObjectsInPassingEvents_ && !flags1.at(object1).second) continue;
4220 >      if(!plotAllObjectsInPassingEvents_ && !flags2.at(object2).second) continue;
4221 >      if(!plotAllObjectsInPassingEvents_ && !pairFlags.at(pairCounter).second) continue;
4222  
4223        string currentString = parameters.inputVariables.at(0);
4224        string inputVariable = "";
4225        string function = "";
4226 <      if(currentString.find("(")==std::string::npos){
4226 >      if(currentString.find("(")==string::npos){
4227          inputVariable = currentString;// variable to cut on
4228        }
4229        else{
# Line 3182 | Line 4232 | void OSUAnalysis::fill1DHistogram(TH1* h
4232          inputVariable = inputVariable.substr(0,inputVariable.size()-1);//remove trailing ")"
4233        }
4234  
4235 <      double value = valueLookup(&inputCollection1->at(object1), &inputCollection2->at(object2), inputVariable, function);
4235 >      string stringValue = "";
4236 >      double value = valueLookup(&inputCollection1->at(object1), &inputCollection2->at(object2), inputVariable, function, stringValue);
4237        histo->Fill(value,scaleFactor);
4238  
4239      }
# Line 3192 | Line 4243 | void OSUAnalysis::fill1DHistogram(TH1* h
4243  
4244  
4245   template <class InputCollection>
4246 < void OSUAnalysis::fill2DHistogram(TH2* histo, histogram parameters, InputCollection inputCollection,vector<bool> flags, double scaleFactor){
4246 > void OSUAnalysis::fill2DHistogram(TH2* histo, histogram parameters, InputCollection inputCollection, flagPair flags, double scaleFactor){
4247  
4248    for (uint object = 0; object != inputCollection->size(); object++){
4249  
4250 <    if(!plotAllObjectsInPassingEvents_ && !flags.at(object)) continue;
4250 >    if(!plotAllObjectsInPassingEvents_ && !flags.at(object).second) continue;
4251  
4252 +    string stringValue = "";
4253      string currentString = parameters.inputVariables.at(0);
4254      string inputVariable = "";
4255      string function = "";
4256 <    if(currentString.find("(")==std::string::npos){
4256 >    if(currentString.find("(")==string::npos){
4257        inputVariable = currentString;// variable to cut on
4258      }
4259      else{
# Line 3209 | Line 4261 | void OSUAnalysis::fill2DHistogram(TH2* h
4261        inputVariable = currentString.substr(currentString.find("(")+1);//get rest of string
4262        inputVariable = inputVariable.substr(0,inputVariable.size()-1);//remove trailing ")"
4263      }
4264 <    double valueX = valueLookup(&inputCollection->at(object), inputVariable, function);
4264 >    double valueX = valueLookup(&inputCollection->at(object), inputVariable, function, stringValue);
4265  
4266      currentString = parameters.inputVariables.at(1);
4267      inputVariable = "";
4268      function = "";
4269 <    if(currentString.find("(")==std::string::npos){
4269 >    if(currentString.find("(")==string::npos){
4270        inputVariable = currentString;// variable to cut on
4271      }
4272      else{
# Line 3223 | Line 4275 | void OSUAnalysis::fill2DHistogram(TH2* h
4275        inputVariable = inputVariable.substr(0,inputVariable.size()-1);//remove trailing ")"
4276      }
4277  
4278 <    double valueY = valueLookup(&inputCollection->at(object), inputVariable, function);
4278 >    double valueY = valueLookup(&inputCollection->at(object), inputVariable, function, stringValue);
4279  
4280      histo->Fill(valueX,valueY,scaleFactor);
4281  
# Line 3232 | Line 4284 | void OSUAnalysis::fill2DHistogram(TH2* h
4284   }
4285  
4286   template <class InputCollection1, class InputCollection2>
4287 < void OSUAnalysis::fill2DHistogram(TH2* histo, histogram parameters, InputCollection1 inputCollection1, InputCollection2 inputCollection2, vector<bool> flags1, vector<bool> flags2, vector<bool> pairFlags, double scaleFactor){
4287 > void OSUAnalysis::fill2DHistogram(TH2* histo, histogram parameters, InputCollection1 inputCollection1, InputCollection2 inputCollection2, flagPair flags1, flagPair flags2, flagPair pairFlags, double scaleFactor){
4288  
4289    bool sameObjects = false;
4290    if(typeid(InputCollection1).name() == typeid(InputCollection2).name()) sameObjects = true;
# Line 3246 | Line 4298 | void OSUAnalysis::fill2DHistogram(TH2* h
4298        pairCounter++;
4299  
4300        //only take objects which have passed all cuts and pairs which have passed all cuts
4301 <      if(!plotAllObjectsInPassingEvents_ && !flags1.at(object1)) continue;
4302 <      if(!plotAllObjectsInPassingEvents_ && !flags2.at(object2)) continue;
4303 <      if(!plotAllObjectsInPassingEvents_ && !pairFlags.at(pairCounter)) continue;
4301 >      if(!plotAllObjectsInPassingEvents_ && !flags1.at(object1).second) continue;
4302 >      if(!plotAllObjectsInPassingEvents_ && !flags2.at(object2).second) continue;
4303 >      if(!plotAllObjectsInPassingEvents_ && !pairFlags.at(pairCounter).second) continue;
4304  
4305 +      string stringValue = "";
4306        string currentString = parameters.inputVariables.at(0);
4307        string inputVariable = "";
4308        string function = "";
4309 <      if(currentString.find("(")==std::string::npos){
4309 >      if(currentString.find("(")==string::npos){
4310          inputVariable = currentString;// variable to cut on
4311        }
4312        else{
# Line 3261 | Line 4314 | void OSUAnalysis::fill2DHistogram(TH2* h
4314          inputVariable = currentString.substr(currentString.find("(")+1);//get rest of string
4315          inputVariable = inputVariable.substr(0,inputVariable.size()-1);//remove trailing ")"
4316        }
4317 <      double valueX = valueLookup(&inputCollection1->at(object1), &inputCollection2->at(object2), inputVariable, function);
4317 >      double valueX = valueLookup(&inputCollection1->at(object1), &inputCollection2->at(object2), inputVariable, function, stringValue);
4318  
4319        currentString = parameters.inputVariables.at(1);
4320        inputVariable = "";
4321        function = "";
4322 <      if(currentString.find("(")==std::string::npos){
4322 >      if(currentString.find("(")==string::npos){
4323          inputVariable = currentString;// variable to cut on
4324        }
4325        else{
# Line 3274 | Line 4327 | void OSUAnalysis::fill2DHistogram(TH2* h
4327          inputVariable = currentString.substr(currentString.find("(")+1);//get rest of string
4328          inputVariable = inputVariable.substr(0,inputVariable.size()-1);//remove trailing ")"
4329        }
4330 <      double valueY = valueLookup(&inputCollection1->at(object1), &inputCollection2->at(object2), inputVariable, function);
4330 >      double valueY = valueLookup(&inputCollection1->at(object1), &inputCollection2->at(object2), inputVariable, function, stringValue);
4331  
4332  
4333        histo->Fill(valueX,valueY,scaleFactor);
# Line 3295 | Line 4348 | int OSUAnalysis::getGenMatchedParticleIn
4348  
4349      double currentDeltaR = deltaR(object->eta,object->phi,mcparticle->eta,mcparticle->phi);
4350      if(currentDeltaR > 0.05) continue;
4351 <    //     cout << std::setprecision(3) << std::setw(20)
4351 >    //     cout << setprecision(3) << setw(20)
4352      //          << "\tcurrentParticle:  eta = " << mcparticles->at(mcparticle - mcparticles->begin()).eta
4353 <    //          << std::setw(20)
4353 >    //          << setw(20)
4354      //          << "\tphi = " << mcparticles->at(mcparticle - mcparticles->begin()).phi
4355 <    //          << std::setw(20)
4355 >    //          << setw(20)
4356      //          << "\tdeltaR = " << currentDeltaR
4357 <    //          << std::setprecision(1)
4358 <    //          << std::setw(20)
4357 >    //          << setprecision(1)
4358 >    //          << setw(20)
4359      //          << "\tid = " << mcparticles->at(mcparticle - mcparticles->begin()).id
4360 <    //          << std::setw(20)
4360 >    //          << setw(20)
4361      //          << "\tmotherId = " << mcparticles->at(mcparticle - mcparticles->begin()).motherId
4362 <    //          << std::setw(20)
4362 >    //          << setw(20)
4363      //          << "\tstatus = " << mcparticles->at(mcparticle - mcparticles->begin()).status<< endl;
4364      if(currentDeltaR < bestMatchDeltaR && mcparticles->at(mcparticle - mcparticles->begin()).id != mcparticles->at(mcparticle - mcparticles->begin()).motherId){
4365        bestMatchIndex = mcparticle - mcparticles->begin();
# Line 3369 | Line 4422 | int OSUAnalysis::findTauMotherIndex(cons
4422   // 20        strange baryon
4423   // 21        charm baryon
4424   // 22        bottom baryon
4425 < // 23        other
4425 > // 23        QCD string
4426 > // 24        other
4427  
4428   int OSUAnalysis::getPdgIdBinValue(int pdgId){
4429  
# Line 3393 | Line 4447 | int OSUAnalysis::getPdgIdBinValue(int pd
4447    else if(absPdgId > 3000 && absPdgId < 4000  ) binValue = 20;
4448    else if(absPdgId > 4000 && absPdgId < 5000  ) binValue = 21;
4449    else if(absPdgId > 5000 && absPdgId < 6000  ) binValue = 22;
4450 +  else if(absPdgId == 92  ) binValue = 23;
4451  
4452 <  else binValue = 23;
4452 >  else binValue = 24;
4453  
4454    return binValue;
4455  
# Line 3404 | Line 4459 | const BNprimaryvertex *
4459   OSUAnalysis::chosenVertex ()
4460   {
4461    const BNprimaryvertex *chosenVertex = 0;
4462 <  if(std::find(objectsToCut.begin(), objectsToCut.end(), "primaryvertexs") != objectsToCut.end()) {
4463 <    vector<bool> vertexFlags = cumulativeFlags.at("primaryvertexs").back().size() ? cumulativeFlags.at("primaryvertexs").back() :
4464 <      cumulativeFlags.at("primaryvertexs").at(cumulativeFlags.at("primaryvertexs").size() - 2);
4462 >  if(cumulativeFlags.find ("primaryvertexs") != cumulativeFlags.end ()){
4463 >    flagPair vertexFlags;
4464 >    for (int i = cumulativeFlags.at("primaryvertexs").size() - 1; i >= 0; i--){
4465 >      if (cumulativeFlags.at("primaryvertexs").at(i).size()){
4466 >        vertexFlags = cumulativeFlags.at("primaryvertexs").at(i);
4467 >        break;
4468 >      }
4469 >    }
4470      for (uint vertexIndex = 0; vertexIndex != vertexFlags.size(); vertexIndex++){
4471 <      if(!vertexFlags.at(vertexIndex)) continue;
4471 >      if(!vertexFlags.at(vertexIndex).first) continue;
4472        chosenVertex = & primaryvertexs->at(vertexIndex);
4473        break;
4474      }
4475    }
4476 <  else {
4477 <    chosenVertex = &primaryvertexs->at(0);
3418 <  }
4476 >  else if (find (objectsToGet.begin (), objectsToGet.end (), "primaryvertexs") != objectsToGet.end ())
4477 >    chosenVertex = & primaryvertexs->at (0);
4478  
4479    return chosenVertex;
4480   }
# Line 3424 | Line 4483 | const BNmet *
4483   OSUAnalysis::chosenMET ()
4484   {
4485    const BNmet *chosenMET = 0;
4486 <  if(std::find(objectsToCut.begin(), objectsToCut.end(), "mets") != objectsToCut.end()) {
4487 <    vector<bool> metFlags = cumulativeFlags.at("mets").back().size() ? cumulativeFlags.at("mets").back() :
4488 <      cumulativeFlags.at("mets").at(cumulativeFlags.at("mets").size() - 2);
4486 >  if(cumulativeFlags.find ("mets") != cumulativeFlags.end ()){
4487 >    flagPair metFlags;
4488 >    for (int i = cumulativeFlags.at("mets").size() - 1; i >= 0; i--){
4489 >      if (cumulativeFlags.at("mets").at(i).size()){
4490 >        metFlags = cumulativeFlags.at("mets").at(i);
4491 >        break;
4492 >      }
4493 >    }
4494      for (uint metIndex = 0; metIndex != metFlags.size(); metIndex++){
4495 <      if(!metFlags.at(metIndex)) continue;
4495 >      if(!metFlags.at(metIndex).first) continue;
4496        chosenMET = & mets->at(metIndex);
4497        break;
4498      }
4499    }
4500 <  else {
4501 <    chosenMET = &mets->at(0);
3438 <  }
4500 >  else if (find (objectsToGet.begin (), objectsToGet.end (), "mets") != objectsToGet.end ())
4501 >    chosenMET = & mets->at (0);
4502  
4503    return chosenMET;
4504   }
# Line 3444 | Line 4507 | const BNelectron *
4507   OSUAnalysis::chosenElectron ()
4508   {
4509    const BNelectron *chosenElectron = 0;
4510 <  if(std::find(objectsToCut.begin(), objectsToCut.end(), "electrons") != objectsToCut.end()) {
4511 <    vector<bool> electronFlags = cumulativeFlags.at("electrons").back().size() ? cumulativeFlags.at("electrons").back() :
4512 <      cumulativeFlags.at("electrons").at(cumulativeFlags.at("electrons").size() - 2);
4510 >  if(cumulativeFlags.find ("electrons") != cumulativeFlags.end ()){
4511 >    flagPair electronFlags;
4512 >    for (int i = cumulativeFlags.at("electrons").size() - 1; i >= 0; i--){
4513 >      if (cumulativeFlags.at("electrons").at(i).size()){
4514 >        electronFlags = cumulativeFlags.at("electrons").at(i);
4515 >        break;
4516 >      }
4517 >    }
4518      for (uint electronIndex = 0; electronIndex != electronFlags.size(); electronIndex++){
4519 <      if(!electronFlags.at(electronIndex)) continue;
4519 >      if(!electronFlags.at(electronIndex).first) continue;
4520        chosenElectron = & electrons->at(electronIndex);
4521        break;
4522      }
4523    }
4524 <  else {
4525 <    chosenElectron = &electrons->at(0);
3458 <  }
4524 >  else if (find (objectsToGet.begin (), objectsToGet.end (), "electrons") != objectsToGet.end ())
4525 >    chosenElectron = & electrons->at (0);
4526  
4527    return chosenElectron;
4528   }
4529  
4530 +
4531   const BNmuon *
4532   OSUAnalysis::chosenMuon ()
4533   {
4534    const BNmuon *chosenMuon = 0;
4535 <  if(std::find(objectsToCut.begin(), objectsToCut.end(), "muons") != objectsToCut.end()) {
4536 <    vector<bool> muonFlags = cumulativeFlags.at("muons").back().size() ? cumulativeFlags.at("muons").back() :
4537 <      cumulativeFlags.at("muons").at(cumulativeFlags.at("muons").size() - 2);
4535 >  if(cumulativeFlags.find ("muons") != cumulativeFlags.end ()){
4536 >    flagPair muonFlags;
4537 >    for (int i = cumulativeFlags.at("muons").size() - 1; i >= 0; i--){
4538 >      if (cumulativeFlags.at("muons").at(i).size()){
4539 >        muonFlags = cumulativeFlags.at("muons").at(i);
4540 >        break;
4541 >      }
4542 >    }
4543      for (uint muonIndex = 0; muonIndex != muonFlags.size(); muonIndex++){
4544 <      if(!muonFlags.at(muonIndex)) continue;
4544 >      if(!muonFlags.at(muonIndex).first) continue;
4545        chosenMuon = & muons->at(muonIndex);
4546        break;
4547      }
4548    }
4549 <  else {
4550 <    chosenMuon = &muons->at(0);
3478 <  }
4549 >  else if (find (objectsToGet.begin (), objectsToGet.end (), "muons") != objectsToGet.end ())
4550 >    chosenMuon = & muons->at (0);
4551  
4552    return chosenMuon;
4553   }
4554  
3483 –
4555   DEFINE_FWK_MODULE(OSUAnalysis);

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