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Comparing UserCode/OSUT3Analysis/AnaTools/plugins/OSUAnalysis.cc (file contents):
Revision 1.8 by ahart, Wed Jan 30 22:29:59 2013 UTC vs.
Revision 1.102 by wulsin, Mon Jul 22 15:22:57 2013 UTC

# Line 1 | Line 1
1   #include "OSUT3Analysis/AnaTools/plugins/OSUAnalysis.h"
2
2   OSUAnalysis::OSUAnalysis (const edm::ParameterSet &cfg) :
3    // Retrieve parameters from the configuration file.
4    jets_ (cfg.getParameter<edm::InputTag> ("jets")),
# Line 11 | Line 10 | OSUAnalysis::OSUAnalysis (const edm::Par
10    tracks_ (cfg.getParameter<edm::InputTag> ("tracks")),
11    genjets_ (cfg.getParameter<edm::InputTag> ("genjets")),
12    mcparticles_ (cfg.getParameter<edm::InputTag> ("mcparticles")),
13 +  stops_ (cfg.getParameter<edm::InputTag> ("stops")),
14    primaryvertexs_ (cfg.getParameter<edm::InputTag> ("primaryvertexs")),
15    bxlumis_ (cfg.getParameter<edm::InputTag> ("bxlumis")),
16    photons_ (cfg.getParameter<edm::InputTag> ("photons")),
17    superclusters_ (cfg.getParameter<edm::InputTag> ("superclusters")),
18    triggers_ (cfg.getParameter<edm::InputTag> ("triggers")),
19 +  trigobjs_ (cfg.getParameter<edm::InputTag> ("trigobjs")),
20 +  puFile_ (cfg.getParameter<string> ("puFile")),
21 +  deadEcalFile_ (cfg.getParameter<string> ("deadEcalFile")),
22 +  muonSFFile_ (cfg.getParameter<string> ("muonSFFile")),
23 +  dataPU_ (cfg.getParameter<string> ("dataPU")),
24 +  electronSFID_ (cfg.getParameter<string> ("electronSFID")),
25 +  muonSF_ (cfg.getParameter<string> ("muonSF")),
26 +  dataset_ (cfg.getParameter<string> ("dataset")),
27 +  datasetType_ (cfg.getParameter<string> ("datasetType")),
28 +  channels_  (cfg.getParameter<vector<edm::ParameterSet> >("channels")),
29 +  histogramSets_ (cfg.getParameter<vector<edm::ParameterSet> >("histogramSets")),
30 +  useEDMFormat_   (cfg.getParameter<bool>("useEDMFormat")),
31 +  treeBranchSets_   (cfg.getParameter<vector<edm::ParameterSet> >("treeBranchSets")),
32 +  plotAllObjectsInPassingEvents_ (cfg.getParameter<bool> ("plotAllObjectsInPassingEvents")),
33 +  doPileupReweighting_ (cfg.getParameter<bool> ("doPileupReweighting")),
34 +  applyLeptonSF_ (cfg.getParameter<bool> ("applyLeptonSF")),
35 +  applyBtagSF_ (cfg.getParameter<bool> ("applyBtagSF")),
36 +  minBtag_ (cfg.getParameter<int> ("minBtag")),
37 +  printEventInfo_      (cfg.getParameter<bool> ("printEventInfo")),
38 +  printAllTriggers_    (cfg.getParameter<bool> ("printAllTriggers")),
39 +  useTrackCaloRhoCorr_ (cfg.getParameter<bool> ("useTrackCaloRhoCorr")),
40 +  stopCTau_ (cfg.getParameter<vector<double> > ("stopCTau")),
41 +  GetPlotsAfterEachCut_ (cfg.getParameter<bool> ("GetPlotsAfterEachCut"))
42 + {
43  
44 +  TH1::SetDefaultSumw2 ();
45  
46 <  channels_  (cfg.getParameter<vector<edm::ParameterSet> >("channels"))
46 >  //create pile-up reweighting object, if necessary
47 >  if(datasetType_ != "data") {
48 >    if(doPileupReweighting_) puWeight_ = new PUWeight (puFile_, dataPU_, dataset_);
49 >    if (applyLeptonSF_){
50 >      muonSFWeight_ = new MuonSFWeight (muonSFFile_, muonSF_);
51 >      electronSFWeight_ = new ElectronSFWeight ("53X", electronSFID_);
52 >    }
53 >    if (applyBtagSF_){
54 >      bTagSFWeight_ = new BtagSFWeight;
55 >    }
56 >  }
57 >  if (datasetType_ == "signalMC" && regex_match (dataset_, regex ("stop.*to.*_.*mm.*")))
58 >    stopCTauWeight_ = new StopCTauWeight (stopCTau_.at (0), stopCTau_.at (1), stops_);
59  
23 {
24  TH1::SetDefaultSumw2 ();
60  
61    // Construct Cutflow Objects. These store the results of cut decisions and
62    // handle filling cut flow histograms.
63    masterCutFlow_ = new CutFlow (fs_);
64 <  std::vector<TFileDirectory> directories;
64 >
65 >  //always get vertex collection so we can assign the primary vertex in the event
66 >  objectsToGet.push_back("primaryvertexs");
67 >  objectsToPlot.push_back("primaryvertexs");
68 >  objectsToFlag.push_back("primaryvertexs");
69 >
70 >
71 >  //always get the MC particles to do GEN-matching
72 >  objectsToGet.push_back("mcparticles");
73 >
74 >  //always get the event collection to do pile-up reweighting
75 >  objectsToGet.push_back("events");
76 >
77 >
78 >  // Parse the tree variable definitions.
79 >  for (uint iBranchSet = 0; !useEDMFormat_ && iBranchSet<treeBranchSets_.size(); iBranchSet++) {
80 >    string tempInputCollection = treeBranchSets_.at(iBranchSet).getParameter<string> ("inputCollection");
81 >    if(tempInputCollection.find("pairs")!=string::npos) { clog << "Warning:  tree filling is not configured for pairs of objects, so will not work for collection: " << tempInputCollection << endl; }
82 >    objectsToGet.push_back(tempInputCollection);
83 >    objectsToFlag.push_back(tempInputCollection);
84 >
85 >    vector<string> branchList(treeBranchSets_.at(iBranchSet).getParameter<vector<string> >("branches"));
86 >
87 >    for (uint iBranch = 0; iBranch<branchList.size(); iBranch++) {
88 >      BranchSpecs br;
89 >      br.inputCollection = tempInputCollection;
90 >      br.inputVariable = branchList.at(iBranch);
91 >      TString newName = TString(br.inputCollection) + "_" + TString(br.inputVariable);
92 >      br.name = string(newName.Data());
93 >      treeBranches_.push_back(br);
94 >    }
95 >
96 >  } // end   for (uint iBranchSet = 0; iBranchSet<treeBranchSets_.size(); iBranchSet++)
97 >
98 >
99 >  //parse the histogram definitions
100 >  for(uint currentHistogramSet = 0; currentHistogramSet != histogramSets_.size(); currentHistogramSet++){
101 >
102 >    string tempInputCollection = histogramSets_.at(currentHistogramSet).getParameter<string> ("inputCollection");
103 >    if(tempInputCollection == "muon-electron pairs") tempInputCollection = "electron-muon pairs";
104 >    if(tempInputCollection == "photon-muon pairs") tempInputCollection = "muon-photon pairs";
105 >    if(tempInputCollection == "photon-electron pairs") tempInputCollection = "electron-photon pairs";
106 >    if(tempInputCollection == "jet-electron pairs") tempInputCollection = "electron-jet pairs";
107 >    if(tempInputCollection == "jet-photon pairs") tempInputCollection = "photon-jet pairs";
108 >    if(tempInputCollection == "jet-muon pairs") tempInputCollection = "muon-jet pairs";
109 >    if(tempInputCollection == "event-muon pairs") tempInputCollection = "muon-event pairs";
110 >    if(tempInputCollection == "jet-met pairs")  tempInputCollection = "met-jet pairs";
111 >    if(tempInputCollection == "track-jet pairs")  tempInputCollection = "track-jet pairs";
112 >    if(tempInputCollection == "event-track pairs")   tempInputCollection = "track-event pairs";
113 >    if(tempInputCollection == "secondary muon-muon pairs")   tempInputCollection = "muon-secondary muon pairs";
114 >    if(tempInputCollection == "secondary jet-muon pairs")   tempInputCollection = "muon-secondary jet pairs";
115 >    if(tempInputCollection == "secondary photon-muon pairs")   tempInputCollection = "muon-secondary photon pairs";
116 >    if(tempInputCollection == "secondary jet-electron pairs")   tempInputCollection = "electron-secondary jet pairs";
117 >    if(tempInputCollection == "secondary jet-photon pairs")   tempInputCollection = "photon-secondary jet pairs";
118 >    if(tempInputCollection == "secondary jet-jet pairs")   tempInputCollection = "jet-secondary jet pairs";
119 >    if(tempInputCollection == "secondary electron-electron pairs")   tempInputCollection = "electron-secondary electron pairs";
120 >    if(tempInputCollection == "trigobj-electron pairs")   tempInputCollection = "electron-trigobj pairs";
121 >    if(tempInputCollection == "trigobj-muon pairs")   tempInputCollection = "muon-trigobj pairs";
122 >    if(tempInputCollection.find("pairs")==string::npos){ //just a single object
123 >      if(tempInputCollection.find("secondary")!=string::npos){//secondary object
124 >        int spaceIndex = tempInputCollection.find(" ");
125 >        int secondWordLength = tempInputCollection.size() - spaceIndex;
126 >        objectsToGet.push_back(tempInputCollection.substr(spaceIndex+1,secondWordLength));
127 >      }
128 >      else{
129 >        objectsToGet.push_back(tempInputCollection);
130 >      }
131 >      objectsToPlot.push_back(tempInputCollection);
132 >      objectsToFlag.push_back(tempInputCollection);
133 >    } else { //pair of objects, need to add the pair and the individual objects to the lists of things to Get/Plot/Cut
134 >      string obj1;
135 >      string obj2;
136 >      getTwoObjs(tempInputCollection, obj1, obj2);
137 >      string obj2ToGet = getObjToGet(obj2);
138 >      objectsToFlag.push_back(tempInputCollection);
139 >      objectsToFlag.push_back(obj1);
140 >      objectsToFlag.push_back(obj2);
141 >      objectsToPlot.push_back(tempInputCollection);
142 >      objectsToPlot.push_back(obj1);
143 >      objectsToPlot.push_back(obj2);
144 >      objectsToGet.push_back(tempInputCollection);
145 >      objectsToGet.push_back(obj1);
146 >      objectsToGet.push_back(obj2ToGet);
147 >    } // end else
148 >      if (find(objectsToPlot.begin(), objectsToPlot.end(), "events") != objectsToPlot.end())
149 >        objectsToGet.push_back("jets");
150 >
151 >
152 >    vector<edm::ParameterSet> histogramList_  (histogramSets_.at(currentHistogramSet).getParameter<vector<edm::ParameterSet> >("histograms"));
153 >
154 >    for(uint currentHistogram = 0; currentHistogram != histogramList_.size(); currentHistogram++){
155 >
156 >      vector<double> defaultValue;
157 >      defaultValue.push_back (-1.0);
158 >
159 >      histogram tempHistogram;
160 >      tempHistogram.inputCollection = tempInputCollection;
161 >      tempHistogram.name = histogramList_.at(currentHistogram).getParameter<string>("name");
162 >      tempHistogram.title = histogramList_.at(currentHistogram).getParameter<string>("title");
163 >      tempHistogram.bins = histogramList_.at(currentHistogram).getUntrackedParameter<vector<double> >("bins", defaultValue);
164 >      tempHistogram.variableBinsX = histogramList_.at(currentHistogram).getUntrackedParameter<vector<double> >("variableBinsX", defaultValue);
165 >      tempHistogram.variableBinsY = histogramList_.at(currentHistogram).getUntrackedParameter<vector<double> >("variableBinsY", defaultValue);
166 >      tempHistogram.inputVariables = histogramList_.at(currentHistogram).getParameter<vector<string> >("inputVariables");
167 >
168 >      histograms.push_back(tempHistogram);
169 >
170 >    }
171 >  } //   for(uint currentHistogramSet = 0; currentHistogramSet != histogramSets_.size(); currentHistogramSet++)
172 >
173 >  //make unique vector of objects we need to plot (so we can book a histogram with the number of each object)
174 >  sort( objectsToPlot.begin(), objectsToPlot.end() );
175 >  objectsToPlot.erase( unique( objectsToPlot.begin(), objectsToPlot.end() ), objectsToPlot.end() );
176 >
177 >
178 >
179 >  //add histograms with the gen-matched id, mother id, and grandmother id
180 >  for(uint currentObjectIndex = 0; currentObjectIndex != objectsToPlot.size(); currentObjectIndex++){
181 >
182 >    string currentObject = objectsToPlot.at(currentObjectIndex);
183 >    if(currentObject != "muons" && currentObject != "secondary muons" && currentObject != "secondary electrons" && currentObject != "electrons" && currentObject != "taus" && currentObject != "tracks" && currentObject != "photons" && currentObject != "secondary photons"&& currentObject != "superclusters") continue;
184 >
185 >    histogram tempIdHisto;
186 >    histogram tempMomIdHisto;
187 >    histogram tempGmaIdHisto;
188 >    histogram tempIdVsMomIdHisto;
189 >    histogram tempIdVsGmaIdHisto;
190 >
191 >    tempIdHisto.inputCollection = currentObject;
192 >    tempMomIdHisto.inputCollection = currentObject;
193 >    tempGmaIdHisto.inputCollection = currentObject;
194 >    tempIdVsMomIdHisto.inputCollection = currentObject;
195 >    tempIdVsGmaIdHisto.inputCollection = currentObject;
196 >
197 >    if(currentObject == "secondary muons") currentObject = "secondaryMuons";
198 >    if(currentObject == "secondary photons") currentObject = "secondaryPhotons";
199 >    if(currentObject == "secondary electrons") currentObject = "secondaryElectrons";
200 >
201 >    currentObject = currentObject.substr(0, currentObject.size()-1);
202 >    tempIdHisto.name = currentObject+"GenMatchId";
203 >    tempMomIdHisto.name = currentObject+"GenMatchMotherId";
204 >    tempGmaIdHisto.name = currentObject+"GenMatchGrandmotherId";
205 >    tempIdVsMomIdHisto.name = currentObject+"GenMatchIdVsMotherId";
206 >    tempIdVsGmaIdHisto.name = currentObject+"GenMatchIdVsGrandmotherId";
207 >
208 >    currentObject.at(0) = toupper(currentObject.at(0));
209 >    tempIdHisto.title = currentObject+" Gen-matched Particle";
210 >    tempMomIdHisto.title = currentObject+" Gen-matched Particle's Mother";
211 >    tempGmaIdHisto.title = currentObject+" Gen-matched Particle's Grandmother";
212 >    tempIdVsMomIdHisto.title = currentObject+" Gen-matched Particle's Mother vs. Particle;Particle;Mother";
213 >    tempIdVsGmaIdHisto.title = currentObject+" Gen-matched Particle's Grandmother vs. Particle;Particle;Grandmother";
214 >
215 >
216 >    int maxNum = 25;
217 >    vector<double> binVector;
218 >    binVector.push_back(maxNum);
219 >    binVector.push_back(0);
220 >    binVector.push_back(maxNum);
221 >
222 >    tempIdHisto.bins = binVector;
223 >    tempIdHisto.inputVariables.push_back("genMatchedId");
224 >    tempMomIdHisto.bins = binVector;
225 >    tempMomIdHisto.inputVariables.push_back("genMatchedMotherId");
226 >    tempGmaIdHisto.bins = binVector;
227 >    tempGmaIdHisto.inputVariables.push_back("genMatchedGrandmotherId");
228 >    binVector.push_back(maxNum);
229 >    binVector.push_back(0);
230 >    binVector.push_back(maxNum);
231 >    tempIdVsMomIdHisto.bins = binVector;
232 >    tempIdVsMomIdHisto.inputVariables.push_back("genMatchedId");
233 >    tempIdVsMomIdHisto.inputVariables.push_back("genMatchedMotherIdReverse");
234 >    tempIdVsGmaIdHisto.bins = binVector;
235 >    tempIdVsGmaIdHisto.inputVariables.push_back("genMatchedId");
236 >    tempIdVsGmaIdHisto.inputVariables.push_back("genMatchedGrandmotherIdReverse");
237 >
238 >    histograms.push_back(tempIdHisto);
239 >    histograms.push_back(tempMomIdHisto);
240 >    histograms.push_back(tempGmaIdHisto);
241 >    histograms.push_back(tempIdVsMomIdHisto);
242 >    histograms.push_back(tempIdVsGmaIdHisto);
243 >  }
244  
245  
246    channel tempChannel;
# Line 41 | Line 255 | OSUAnalysis::OSUAnalysis (const edm::Par
255      //set triggers for this channel
256      vector<string> triggerNames;
257      triggerNames.clear();
258 +    vector<string> triggerToVetoNames;
259 +    triggerToVetoNames.clear();
260 +
261      tempChannel.triggers.clear();
262 +    tempChannel.triggersToVeto.clear();
263      if(channels_.at(currentChannel).exists("triggers")){
264        triggerNames   = channels_.at(currentChannel).getParameter<vector<string> >("triggers");
265        for(uint trigger = 0; trigger!= triggerNames.size(); trigger++)
266          tempChannel.triggers.push_back(triggerNames.at(trigger));
267 <      allNecessaryObjects.push_back("triggers");
267 >      objectsToGet.push_back("triggers");
268      }
269 +    if(channels_.at(currentChannel).exists("triggersToVeto")){
270 +      triggerToVetoNames = channels_.at(currentChannel).getParameter<vector<string> >("triggersToVeto");
271 +      for(uint trigger = 0; trigger!= triggerToVetoNames.size(); trigger++)
272 +        tempChannel.triggersToVeto.push_back(triggerToVetoNames.at(trigger));
273 +      objectsToGet.push_back("triggers");
274 +    }
275 +
276  
277  
278      //create cutFlow for this channel
279      cutFlows_.push_back (new CutFlow (fs_, channelName));
280 <
281 <    //book a directory in the output file with the name of the channel
282 <    TFileDirectory subDir = fs_->mkdir( channelName );
58 <    directories.push_back(subDir);
59 <    std::map<std::string, TH1D*> histoMap;
60 <    oneDHists_.push_back(histoMap);
61 <
62 <    //gen histograms
63 <    oneDHists_.at(currentChannel)["genD0"] = directories.at(currentChannel).make<TH1D> ("genD0",channelLabel+" channel: Gen d_{0}; d_{0} [cm] ", 1000, -1, 1);
64 <    oneDHists_.at(currentChannel)["genAbsD0"] = directories.at(currentChannel).make<TH1D> ("genAbsD0",channelLabel+" channel: Gen d_{0}; |d_{0}| [cm] ", 1000, 0, 1);
65 <    oneDHists_.at(currentChannel)["genDZ"] = directories.at(currentChannel).make<TH1D> ("genDZ",channelLabel+" channel: Gen d_{z}; d_{z} [cm] ", 1000, -10, 10);
66 <    oneDHists_.at(currentChannel)["genAbsDZ"] = directories.at(currentChannel).make<TH1D> ("genAbsDZ",channelLabel+" channel: Gen d_{z}; |d_{z}| [cm] ", 1000, 0, 10);
67 <
68 <    //muon histograms
69 <    allNecessaryObjects.push_back("muons");
70 <    oneDHists_.at(currentChannel)["muonPt"]  = directories.at(currentChannel).make<TH1D> ("muonPt",channelLabel+" channel: Muon Transverse Momentum; p_{T} [GeV]", 100, 0, 500);
71 <    oneDHists_.at(currentChannel)["muonEta"] = directories.at(currentChannel).make<TH1D> ("muonEta",channelLabel+" channel: Muon Eta; #eta", 100, -5, 5);
72 <    oneDHists_.at(currentChannel)["muonD0"] = directories.at(currentChannel).make<TH1D> ("muonD0",channelLabel+" channel: Muon d_{0}; d_{0} [cm] ", 1000, -1, 1);
73 <    oneDHists_.at(currentChannel)["muonDz"] = directories.at(currentChannel).make<TH1D> ("muonDz",channelLabel+" channel: Muon d_{z}; d_{z} [cm] ", 1000, -20, 20);
74 <    oneDHists_.at(currentChannel)["muonAbsD0"] = directories.at(currentChannel).make<TH1D> ("muonAbsD0",channelLabel+" channel: Muon d_{0}; |d_{0}| [cm] ", 1000, 0, 1);
75 <    oneDHists_.at(currentChannel)["muonDZ"] = directories.at(currentChannel).make<TH1D> ("muonDZ",channelLabel+" channel: Muon d_{z}; d_{z} [cm] ", 1000, -10, 10);
76 <    oneDHists_.at(currentChannel)["muonAbsDZ"] = directories.at(currentChannel).make<TH1D> ("muonAbsDZ",channelLabel+" channel: Muon d_{z}; |d_{z}| [cm] ", 1000, 0, 10);
77 <    oneDHists_.at(currentChannel)["muonD0Sig"] = directories.at(currentChannel).make<TH1D> ("muonD0Sig",channelLabel+" channel: Muon d_{0} Significance; d_{0} / #sigma_{d_{0}} ", 1000, -10.0, 10.0);
78 <    oneDHists_.at(currentChannel)["muonAbsD0Sig"] = directories.at(currentChannel).make<TH1D> ("muonAbsD0Sig",channelLabel+" channel: Muon d_{0} Significance; |d_{0}| / #sigma_{d_{0}} ", 1000, 0, 10.0);
79 <    oneDHists_.at(currentChannel)["muonIso"] = directories.at(currentChannel).make<TH1D> ("muonIso",channelLabel+" channel: Muon Combined Relative Isolation; rel. iso. ", 1000, 0, 1);
80 <    oneDHists_.at(currentChannel)["numMuons"] = directories.at(currentChannel).make<TH1D> ("numMuons",channelLabel+" channel: Number of Selected Muons; # muons", 10, 0, 10);
81 <
82 <
83 <    //electron histograms
84 <    allNecessaryObjects.push_back("electrons");
85 <    oneDHists_.at(currentChannel)["electronPt"]  = directories.at(currentChannel).make<TH1D> ("electronPt",channelLabel+" channel: Electron Transverse Momentum; p_{T} [GeV]", 100, 0, 500);
86 <    oneDHists_.at(currentChannel)["electronEta"] = directories.at(currentChannel).make<TH1D> ("electronEta",channelLabel+" channel: Electron Eta; #eta", 50, -5, 5);
87 <    oneDHists_.at(currentChannel)["electronD0"] = directories.at(currentChannel).make<TH1D> ("electronD0",channelLabel+" channel: Electron d_{0}; d_{0} [cm] ", 1000, -1, 1);
88 <    oneDHists_.at(currentChannel)["electronDz"] = directories.at(currentChannel).make<TH1D> ("electronDz",channelLabel+" channel: Electron d_{z}; d_{z} [cm] ", 1000, -20, 20);
89 <    oneDHists_.at(currentChannel)["electronAbsD0"] = directories.at(currentChannel).make<TH1D> ("electronAbsD0",channelLabel+" channel: Electron d_{0}; |d_{0}| [cm] ", 1000, 0, 1);
90 <    oneDHists_.at(currentChannel)["electronDZ"] = directories.at(currentChannel).make<TH1D> ("electronDZ",channelLabel+" channel: Electron d_{z}; d_{z} [cm] ", 1000, -10, 10);
91 <    oneDHists_.at(currentChannel)["electronAbsDZ"] = directories.at(currentChannel).make<TH1D> ("electronAbsDZ",channelLabel+" channel: Electron d_{z}; |d_{z}| [cm] ", 1000, 0, 10);
92 <    oneDHists_.at(currentChannel)["electronD0Sig"] = directories.at(currentChannel).make<TH1D> ("electronD0Sig",channelLabel+" channel: Electron d_{0} Significance; d_{0} / #sigma_{d_{0}} ", 1000, -10.0, 10.0);
93 <    oneDHists_.at(currentChannel)["electronAbsD0Sig"] = directories.at(currentChannel).make<TH1D> ("electronAbsD0Sig",channelLabel+" channel: Electron d_{0} Significance; |d_{0}| / #sigma_{d_{0}} ", 1000, 0, 10.0);
94 <    oneDHists_.at(currentChannel)["electronIso"] = directories.at(currentChannel).make<TH1D> ("electronIso",channelLabel+" channel: Electron Combined Relative Isolation; rel. iso. ", 1000, 0, 1);
95 <    oneDHists_.at(currentChannel)["electronFbrem"] = directories.at(currentChannel).make<TH1D> ("electronFbrem",channelLabel+" channel: Electron Brem. Energy Fraction; fbrem", 1000, 0, 2);
96 <    oneDHists_.at(currentChannel)["electronMVATrig"] = directories.at(currentChannel).make<TH1D> ("electronMVATrig",channelLabel+" channel: Electron ID MVA Output", 100, -1, 1);
97 <    oneDHists_.at(currentChannel)["electronMVANonTrig"] = directories.at(currentChannel).make<TH1D> ("electronMVANonTrig",channelLabel+" channel: Electron ID MVA Output", 100, -1, 1);
98 <    oneDHists_.at(currentChannel)["numElectrons"] = directories.at(currentChannel).make<TH1D> ("numElectrons",channelLabel+" channel: Number of Selected Electrons; # electrons", 10, 0, 10);
99 <
100 <
101 <
280 >    vector<TFileDirectory> directories; //vector of directories in the output file.
281 >    vector<TFileDirectory> treeDirectories; //vector of directories for trees in the output file.
282 >    vector<string> subSubDirNames;//subdirectories in each channel.
283      //get list of cuts for this channel
284      vector<edm::ParameterSet> cuts_  (channels_.at(currentChannel).getParameter<vector<edm::ParameterSet> >("cuts"));
285  
105    vector<string> tempInputCollections;
106
286  
287      //loop over and parse all cuts
288      for(uint currentCut = 0; currentCut != cuts_.size(); currentCut++){
110
289        cut tempCut;
290 <     //store input collection for cut
291 <      string inputCollection = cuts_.at(currentCut).getParameter<string> ("inputCollection");
292 <      tempCut.inputCollection = inputCollection;
290 >      //store input collection for cut
291 >      string tempInputCollection = cuts_.at(currentCut).getParameter<string> ("inputCollection");
292 >      if(tempInputCollection == "muon-electron pairs") tempInputCollection = "electron-muon pairs";
293 >      if(tempInputCollection == "photon-electron pairs") tempInputCollection = "electron-photon pairs";
294 >      if(tempInputCollection == "photon-muon pairs") tempInputCollection = "muon-photon pairs";
295 >      if(tempInputCollection == "jet-electron pairs") tempInputCollection = "electron-jet pairs";
296 >      if(tempInputCollection == "jet-muon pairs") tempInputCollection = "muon-jet pairs";
297 >      if(tempInputCollection == "event-muon pairs") tempInputCollection = "muon-event pairs";
298 >      if(tempInputCollection == "jet-met pairs")  tempInputCollection = "met-jet pairs";
299 >      if(tempInputCollection == "track-jet pairs")  tempInputCollection = "track-jet pairs";
300 >      if(tempInputCollection == "jet-photon pairs") tempInputCollection = "photon-jet pairs";
301 >      if(tempInputCollection == "event-track pairs")   tempInputCollection = "track-event pairs";
302 >      if(tempInputCollection == "secondary muon-muon pairs")   tempInputCollection = "muon-secondary muon pairs";
303 >      if(tempInputCollection == "secondary jet-jet pairs")   tempInputCollection = "jet-secondary jet pairs";
304 >      if(tempInputCollection == "secondary jet-muon pairs")   tempInputCollection = "muon-secondary jet pairs";
305 >      if(tempInputCollection == "secondary photon-muon pairs")   tempInputCollection = "muon-secondary photon pairs";
306 >      if(tempInputCollection == "secondary jet-photon pairs")   tempInputCollection = "photon-secondary jet pairs";
307 >      if(tempInputCollection == "secondary jet-electron pairs")   tempInputCollection = "electron-secondary jet pairs";
308 >      if(tempInputCollection == "secondary electron-electron pairs")   tempInputCollection = "electron-secondary electron pairs";
309 >      if(tempInputCollection == "trigobj-electron pairs")   tempInputCollection = "electron-trigobj pairs";
310 >      if(tempInputCollection == "trigobj-muon pairs")   tempInputCollection = "muon-trigobj pairs";
311 >      tempCut.inputCollection = tempInputCollection;
312 >      if(tempInputCollection.find("pairs")==string::npos){ //just a single object
313 >        if(tempInputCollection.find("secondary")!=string::npos){//secondary object
314 >          int spaceIndex = tempInputCollection.find(" ");
315 >          int secondWordLength = tempInputCollection.size() - spaceIndex;
316 >          objectsToGet.push_back(tempInputCollection.substr(spaceIndex+1,secondWordLength));
317 >        }
318 >        else{
319 >          objectsToGet.push_back(tempInputCollection);
320 >        }
321 >        objectsToCut.push_back(tempInputCollection);
322 >        objectsToFlag.push_back(tempInputCollection);
323 >      }
324 >      else{//pair of objects, need to add them both to objectsToGet
325 >        string obj1;
326 >        string obj2;
327 >        getTwoObjs(tempInputCollection, obj1, obj2);
328 >        string obj2ToGet = getObjToGet(obj2);
329 >        objectsToCut.push_back(tempInputCollection);
330 >        objectsToCut.push_back(obj1);
331 >        objectsToCut.push_back(obj2);
332 >        objectsToFlag.push_back(tempInputCollection);
333 >        objectsToFlag.push_back(obj1);
334 >        objectsToFlag.push_back(obj2);
335 >        objectsToGet.push_back(tempInputCollection);
336 >        objectsToGet.push_back(obj1);
337 >        objectsToGet.push_back(obj2ToGet);
338 >
339 >      }
340 >
341  
116      tempInputCollections.push_back(inputCollection);
117      allNecessaryObjects.push_back(inputCollection);
342  
343        //split cut string into parts and store them
344        string cutString = cuts_.at(currentCut).getParameter<string> ("cutString");
345 <      std::vector<string> cutStringVector = splitString(cutString);
346 <      tempCut.variable = cutStringVector.at(0);// variable to cut on
347 <      tempCut.comparativeOperator = cutStringVector.at(1);// comparison to make
348 <      tempCut.cutValue = atof(cutStringVector.at(2).c_str());// threshold value to pass cut
345 >      vector<string> cutStringVector = splitString(cutString);
346 >      if(cutStringVector.size()!=3 && cutStringVector.size() % 4 !=3){
347 >        clog << "Error: Didn't find the expected number elements in the following cut string: '" << cutString << "'\n";
348 >        exit(0);
349 >      }
350 >      tempCut.numSubcuts = (cutStringVector.size()+1)/4;
351 >      for(int subcutIndex = 0; subcutIndex != tempCut.numSubcuts; subcutIndex++){//loop over all the pieces of the cut combined using &,|
352 >        int indexOffset = 4 * subcutIndex;
353 >        string currentVariableString = cutStringVector.at(indexOffset);
354 >        if(currentVariableString.find("(")==string::npos){
355 >          tempCut.functions.push_back("");//no function was specified
356 >          tempCut.variables.push_back(currentVariableString);// variable to cut on
357 >        }
358 >        else{
359 >          tempCut.functions.push_back(currentVariableString.substr(0,currentVariableString.find("(")));//function comes before the "("
360 >          string tempVariable = currentVariableString.substr(currentVariableString.find("(")+1);//get rest of string
361 >          tempCut.variables.push_back(tempVariable.substr(0,tempVariable.size()-1));//remove trailing ")"
362 >        }
363 >        tempCut.comparativeOperators.push_back(cutStringVector.at(indexOffset+1));// comparison to make
364 >        tempCut.cutValues.push_back(atof(cutStringVector.at(indexOffset+2).c_str()));// threshold value to pass cut
365 >        tempCut.cutStringValues.push_back(cutStringVector.at(indexOffset+2));// string value to pass cut
366 >        if(subcutIndex != 0) tempCut.logicalOperators.push_back(cutStringVector.at(indexOffset-1)); // logical comparison (and, or)
367 >      }
368  
369        //get number of objects required to pass cut for event to pass
370        string numberRequiredString = cuts_.at(currentCut).getParameter<string> ("numberRequired");
371 <      std::vector<string> numberRequiredVector = splitString(numberRequiredString);
371 >      vector<string> numberRequiredVector = splitString(numberRequiredString);
372 >      if(numberRequiredVector.size()!=2){
373 >        clog << "Error: Didn't find two elements in the following number requirement string: '" << numberRequiredString << "'\n";
374 >        exit(0);
375 >      }
376  
130      // determine number required if comparison contains "="
377        int numberRequiredInt = atoi(numberRequiredVector.at(1).c_str());
132      if(numberRequiredVector.at(0) == ">") numberRequiredInt++;
133      else if(numberRequiredVector.at(0) == "<") numberRequiredInt--;
134
378        tempCut.numberRequired = numberRequiredInt;// number of objects required to pass the cut
379        tempCut.eventComparativeOperator = numberRequiredVector.at(0);// comparison to make
380  
381 <      if(cuts_.at(currentCut).exists("function")){
382 <        tempCut.function = cuts_.at(currentCut).getParameter<string> ("function");
140 <      }
141 <      else tempCut.function = "";
381 >      //Set up vectors to store the directories and subDirectories for each channel.
382 >      string subSubDirName;
383        string tempCutName;
384        if(cuts_.at(currentCut).exists("alias")){
385          tempCutName = cuts_.at(currentCut).getParameter<string> ("alias");
386 +        subSubDirName = "After " + tempCutName + " Cut Applied";
387        }
388        else{
389          //construct string for cutflow table
390          bool plural = numberRequiredInt != 1;
391 <        string collectionString = plural ? inputCollection : inputCollection.substr(0, inputCollection.size()-1);
391 >        string collectionString = plural ? tempInputCollection : tempInputCollection.substr(0, tempInputCollection.size()-1);
392          string cutName =  numberRequiredString + " " + collectionString + " with " + cutString;
393          tempCutName = cutName;
394 +        subSubDirName = "After " + numberRequiredString + " " + collectionString + " with " + cutString + " Cut Applied";
395        }
153      tempCut.name = tempCutName;
396  
397 +      tempCut.isVeto = false;
398 +      if(cuts_.at(currentCut).exists("isVeto")){
399 +        bool isVeto = cuts_.at(currentCut).getParameter<bool> ("isVeto");
400 +        if (isVeto == true) tempCut.isVeto = true;
401 +      }
402 +      subSubDirNames.push_back(subSubDirName);
403 +      tempCut.name = tempCutName;
404  
405        tempChannel.cuts.push_back(tempCut);
406  
407  
408      }//end loop over cuts
409  
410 <    //make unique vector of all objects that this channel cuts on (so we know to set flags for those)
411 <    sort( tempInputCollections.begin(), tempInputCollections.end() );
412 <    tempInputCollections.erase( unique( tempInputCollections.begin(), tempInputCollections.end() ), tempInputCollections.end() );
413 <    tempChannel.inputCollections = tempInputCollections;
410 >    vector<map<string, TH1D*>> oneDHistsTmp;
411 >    vector<map<string, TH2D*>> twoDHistsTmp;
412 >    //book a directory in the output file with the name of the channel
413 >    TFileDirectory subDir = fs_->mkdir( channelName );
414 >    //loop over the cuts to set up subdirectory for each cut if GetPlotsAfterEachCut_ is true.
415 >    if(GetPlotsAfterEachCut_){
416 >      for( uint currentDir=0; currentDir != subSubDirNames.size(); currentDir++){
417 >        TFileDirectory subSubDir = subDir.mkdir( subSubDirNames[currentDir] );
418 >        directories.push_back(subSubDir);
419 >        map<string, TH1D*> oneDhistoMap;
420 >        oneDHistsTmp.push_back(oneDhistoMap);
421 >        map<string, TH2D*> twoDhistoMap;
422 >        twoDHistsTmp.push_back(twoDhistoMap);
423 >      }
424 >      treeDirectories.push_back(subDir);
425 >      oneDHists_.push_back(oneDHistsTmp);
426 >      twoDHists_.push_back(twoDHistsTmp);
427 >    }
428 >    //only set up directories with names of the channels if GetPlotsAfterEachCut_ is false.
429 >    else{
430 >      map<string, TH1D*> oneDhistoMap;
431 >      oneDHistsTmp.push_back(oneDhistoMap);
432 >      map<string, TH2D*> twoDhistoMap;
433 >      twoDHistsTmp.push_back(twoDhistoMap);
434 >      oneDHists_.push_back(oneDHistsTmp);
435 >      twoDHists_.push_back(twoDHistsTmp);
436 >      directories.push_back(subDir);
437 >      treeDirectories.push_back(subDir);
438 >
439 >    }
440 >
441 >    for(uint currentDir = 0; !useEDMFormat_ && currentDir != treeDirectories.size(); currentDir++){
442 >      TTree* newTree = treeDirectories.at(currentDir).make<TTree> (TString("BNTree_"+channelLabel), TString("BNTree_"+channelLabel));
443 >      BNTrees_.push_back(newTree);
444 >      for (uint iBranch = 0; iBranch < treeBranches_.size(); iBranch++){
445 >        BranchSpecs currentVar = treeBranches_.at(iBranch);
446 >        vector<float> newVec;
447 >        BNTreeBranchVals_[currentVar.name] = newVec;
448 >        BNTrees_.back()->Branch(TString(currentVar.name), &BNTreeBranchVals_.at(currentVar.name));
449 >      } // end for (uint iBranch = 0; iBranch < treeBranches_.size(); iBranch++)
450 >    }
451 >
452 >    //book all histograms included in the configuration
453 >    for(uint currentDir = 0; currentDir != directories.size(); currentDir++){//loop over all the directories.
454 >
455 >      for(uint currentHistogramIndex = 0; currentHistogramIndex != histograms.size(); currentHistogramIndex++){
456 >
457 >        histogram currentHistogram = histograms.at(currentHistogramIndex);
458 >        int numBinsElements = currentHistogram.bins.size();
459 >        int numInputVariables = currentHistogram.inputVariables.size();
460 >        int numBinEdgesX = currentHistogram.variableBinsX.size();
461 >        int numBinEdgesY = currentHistogram.variableBinsY.size();
462 >
463 >        if(numBinsElements == 1){
464 >          if(numBinEdgesX > 1){
465 >            if(numBinEdgesY > 1)
466 >              numBinsElements = 6;
467 >            else
468 >              numBinsElements = 3;
469 >          }
470 >        }
471 >        if(numBinsElements != 3 && numBinsElements !=6){
472 >          clog << "Error: Didn't find correct number of bin specifications for histogram named '" << currentHistogram.name << "'\n";
473 >          exit(0);
474 >        }
475 >        else if((numBinsElements == 3 && numInputVariables !=1) || (numBinsElements == 6 && numInputVariables!=2)){
476 >          clog << "Error: Didn't find correct number of input variables for histogram named '" << currentHistogram.name << "'\n";
477 >          exit(0);
478 >        }
479 >        else if(numBinsElements == 3){
480 >          if (currentHistogram.bins.size () == 3)
481 >            oneDHists_.at(currentChannel).at(currentDir)[currentHistogram.name] = directories.at(currentDir).make<TH1D> (TString(currentHistogram.name),channelLabel+" channel: "+currentHistogram.title, currentHistogram.bins.at(0), currentHistogram.bins.at(1), currentHistogram.bins.at(2));
482 >          else
483 >            {
484 >              oneDHists_.at(currentChannel).at(currentDir)[currentHistogram.name] = directories.at(currentDir).make<TH1D> (TString(currentHistogram.name),channelLabel+" channel: "+currentHistogram.title, numBinEdgesX - 1, currentHistogram.variableBinsX.data ());
485 >            }
486 >        }
487 >        else if(numBinsElements == 6){
488 >          if (currentHistogram.bins.size () == 6)
489 >            twoDHists_.at(currentChannel).at(currentDir)[currentHistogram.name] = directories.at(currentDir).make<TH2D> (TString(currentHistogram.name),channelLabel+" channel: "+currentHistogram.title, currentHistogram.bins.at(0), currentHistogram.bins.at(1), currentHistogram.bins.at(2),currentHistogram.bins.at(3),currentHistogram.bins.at(4),currentHistogram.bins.at(5));
490 >          else
491 >            twoDHists_.at(currentChannel).at(currentDir)[currentHistogram.name] = directories.at(currentDir).make<TH2D> (TString(currentHistogram.name),channelLabel+" channel: "+currentHistogram.title, numBinEdgesX - 1, currentHistogram.variableBinsX.data (), numBinEdgesY - 1, currentHistogram.variableBinsY.data ());
492 >        }
493 >
494 >
495 >        if(currentHistogram.name.find("GenMatch")==string::npos) continue;
496 >
497 >        // bin      particle type
498 >        // ---      -------------
499 >        //  0        unmatched
500 >        //  1        u
501 >        //  2        d
502 >        //  3        s
503 >        //  4        c
504 >        //  5        b
505 >        //  6        t
506 >        //  7        e
507 >        //  8        mu
508 >        //  9        tau
509 >        // 10        nu
510 >        // 11        g
511 >        // 12        gamma
512 >        // 13        Z
513 >        // 14        W
514 >        // 15        light meson
515 >        // 16        K meson
516 >        // 17        D meson
517 >        // 18        B meson
518 >        // 19        light baryon
519 >        // 20        strange baryon
520 >        // 21        charm baryon
521 >        // 22        bottom baryon
522 >        // 23        QCD string
523 >        // 24        other
524 >
525 >        vector<TString> labelArray;
526 >        labelArray.push_back("unmatched");
527 >        labelArray.push_back("u");
528 >        labelArray.push_back("d");
529 >        labelArray.push_back("s");
530 >        labelArray.push_back("c");
531 >        labelArray.push_back("b");
532 >        labelArray.push_back("t");
533 >        labelArray.push_back("e");
534 >        labelArray.push_back("#mu");
535 >        labelArray.push_back("#tau");
536 >        labelArray.push_back("#nu");
537 >        labelArray.push_back("g");
538 >        labelArray.push_back("#gamma");
539 >        labelArray.push_back("Z");
540 >        labelArray.push_back("W");
541 >        labelArray.push_back("light meson");
542 >        labelArray.push_back("K meson");
543 >        labelArray.push_back("D meson");
544 >        labelArray.push_back("B meson");
545 >        labelArray.push_back("light baryon");
546 >        labelArray.push_back("strange baryon");
547 >        labelArray.push_back("charm baryon");
548 >        labelArray.push_back("bottom baryon");
549 >        labelArray.push_back("QCD string");
550 >        labelArray.push_back("other");
551 >
552 >        for(int bin = 0; bin !=currentHistogram.bins.at(0); bin++){
553 >          if(currentHistogram.name.find("GenMatchIdVsMotherId")==string::npos && currentHistogram.name.find("GenMatchIdVsGrandmotherId")==string::npos) {
554 >            oneDHists_.at(currentChannel).at(currentDir)[currentHistogram.name]->GetXaxis()->SetBinLabel(bin+1,labelArray.at(bin));
555 >          }
556 >          else {
557 >            twoDHists_.at(currentChannel).at(currentDir)[currentHistogram.name]->GetYaxis()->SetBinLabel(bin+1,labelArray.at(currentHistogram.bins.at(0)-bin-1));
558 >            twoDHists_.at(currentChannel).at(currentDir)[currentHistogram.name]->GetXaxis()->SetBinLabel(bin+1,labelArray.at(bin));
559 >          }
560 >        }
561 >        if(currentHistogram.name.find("GenMatchIdVsMotherId")!=string::npos || currentHistogram.name.find("GenMatchIdVsGrandmotherId")!=string::npos) {
562 >          twoDHists_.at(currentChannel).at(currentDir)[currentHistogram.name]->GetXaxis()->CenterTitle();
563 >          twoDHists_.at(currentChannel).at(currentDir)[currentHistogram.name]->GetYaxis()->CenterTitle();
564 >        }
565 >
566 >      }  // end      for(uint currentHistogramIndex = 0; currentHistogramIndex != histograms.size(); currentHistogramIndex++)
567 >
568  
569 +      // Book a histogram for the number of each object type to be plotted.
570 +      // Name of objectToPlot here must match the name specified in OSUAnalysis::analyze().
571 +      for (uint currentObjectIndex = 0; currentObjectIndex != objectsToPlot.size(); currentObjectIndex++){
572 +        string currentObject = objectsToPlot.at(currentObjectIndex);
573 +        int maxNum = 10;
574 +        if(currentObject == "mcparticles") maxNum = 50;
575 +        else if(currentObject == "primaryvertexs") maxNum = 50;
576 +
577 +        if(currentObject == "muon-muon pairs")                currentObject = "dimuonPairs";
578 +        else if(currentObject == "electron-electron pairs")   currentObject = "dielectronPairs";
579 +        else if(currentObject == "electron-muon pairs")       currentObject = "electronMuonPairs";
580 +        else if(currentObject == "electron-photon pairs")     currentObject = "electronPhotonPairs";
581 +        else if(currentObject == "muon-photon pairs")         currentObject = "muonPhotonPairs";
582 +        else if(currentObject == "secondary jets")            currentObject = "secondaryJets";
583 +        else if(currentObject == "secondary photons")            currentObject = "secondaryPhotons";
584 +        else if(currentObject == "jet-jet pairs")             currentObject = "dijetPairs";
585 +        else if(currentObject == "jet-secondary jet pairs")   currentObject = "jetSecondaryJetPairs";
586 +        else if(currentObject == "electron-jet pairs")        currentObject = "electronJetPairs";
587 +        else if(currentObject == "muon-jet pairs")            currentObject = "muonJetPairs";
588 +        else if(currentObject == "muon-event pairs")            currentObject = "muonEventPairs";
589 +        else if(currentObject == "photon-jet pairs")            currentObject = "photonJetPairs";
590 +        else if(currentObject == "met-jet pairs")             currentObject = "metJetPairs";
591 +        else if(currentObject == "track-jet pairs")           currentObject = "trackJetPairs";
592 +        else if(currentObject == "muon-secondary jet pairs")  currentObject = "muonSecondaryJetPairs";
593 +        else if(currentObject == "muon-secondary photon pairs")  currentObject = "muonSecondaryPhotonPairs";
594 +        else if(currentObject == "photon-secondary jet pairs")  currentObject = "photonSecondaryJetPairs";
595 +        else if(currentObject == "electron-secondary jet pairs")  currentObject = "electronSecondaryJetPairs";
596 +        else if(currentObject == "track-event pairs")         currentObject = "trackEventPairs";
597 +        else if(currentObject == "electron-track pairs")      currentObject = "electronTrackPairs";
598 +        else if(currentObject == "muon-track pairs")          currentObject = "muonTrackPairs";
599 +        else if(currentObject == "muon-tau pairs")            currentObject = "muonTauPairs";
600 +        else if(currentObject == "tau-tau pairs")             currentObject = "ditauPairs";
601 +        else if(currentObject == "tau-track pairs")           currentObject = "tauTrackPairs";
602 +        else if(currentObject == "muon-secondary muon pairs") currentObject = "muonSecondaryMuonPairs";
603 +        else if(currentObject == "secondary muons")           currentObject = "secondaryMuons";
604 +        else if(currentObject == "electron-secondary electron pairs") currentObject = "electronSecondaryElectronPairs";
605 +        else if(currentObject == "secondary electrons")       currentObject = "secondaryElectrons";
606 +        else if(currentObject == "electron-trigobj pairs")    currentObject = "electronTrigobjPairs";
607 +        else if(currentObject == "muon-trigobj pairs")        currentObject = "muonTrigobjPairs";
608 +
609 +        currentObject.at(0) = toupper(currentObject.at(0));
610 +        string histoName = "num" + currentObject;
611 +
612 +        if(histoName == "numPrimaryvertexs"){
613 +          string newHistoName = histoName + "BeforePileupCorrection";
614 +          oneDHists_.at(currentChannel).at(currentDir)[newHistoName] = directories.at(currentDir).make<TH1D> (TString(newHistoName),channelLabel+" channel: Number of Selected "+currentObject+" Before Pileup Correction; # "+currentObject, maxNum, 0, maxNum);
615 +          newHistoName = histoName + "AfterPileupCorrection";
616 +          oneDHists_.at(currentChannel).at(currentDir)[newHistoName] = directories.at(currentDir).make<TH1D> (TString(newHistoName),channelLabel+" channel: Number of Selected "+currentObject+ " After Pileup Correction; # "+currentObject, maxNum, 0, maxNum);
617 +        }
618 +        else
619 +          oneDHists_.at(currentChannel).at(currentDir)[histoName] = directories.at(currentDir).make<TH1D> (TString(histoName),channelLabel+" channel: Number of Selected "+currentObject+"; # "+currentObject, maxNum, 0, maxNum);
620 +      }
621 +    }//end of loop over directories
622      channels.push_back(tempChannel);
623      tempChannel.cuts.clear();
168
624    }//end loop over channels
625  
171  //make unique vector of objects we need to cut on (so we make sure to get them from the event)
172  sort( allNecessaryObjects.begin(), allNecessaryObjects.end() );
173  allNecessaryObjects.erase( unique( allNecessaryObjects.begin(), allNecessaryObjects.end() ), allNecessaryObjects.end() );
626  
627 +  //make unique vector of objects we need to get from the event
628 +  sort( objectsToGet.begin(), objectsToGet.end() );
629 +  objectsToGet.erase( unique( objectsToGet.begin(), objectsToGet.end() ), objectsToGet.end() );
630 +  //make unique vector of objects we need to cut on
631 +  sort( objectsToCut.begin(), objectsToCut.end() );
632 +  objectsToCut.erase( unique( objectsToCut.begin(), objectsToCut.end() ), objectsToCut.end() );
633 +  //make unique vector of objects we need to set flags for
634 +  sort( objectsToFlag.begin(), objectsToFlag.end() );
635 +  objectsToFlag.erase( unique( objectsToFlag.begin(), objectsToFlag.end() ), objectsToFlag.end() );
636 +
637 +  produces<map<string, bool> > ("channelDecisions");
638 +
639 +  if (printEventInfo_) {
640 +    findEventsLog = new ofstream();  
641 +    findEventsLog->open("findEvents.txt");  
642 +    clog << "Listing run:lumi:event in file findEvents.txt for events that pass full selection (of any channel)." << endl;  
643 +  }
644 +
645 + } // end constructor OSUAnalysis::OSUAnalysis()
646  
176 }
647  
648   OSUAnalysis::~OSUAnalysis ()
649   {
650 +
651    // Destroying the CutFlow objects causes the cut flow numbers and time
652    // information to be printed to standard output.
653    for(uint currentChannel = 0; currentChannel != channels_.size(); currentChannel++){
654      delete cutFlows_.at(currentChannel);
655    }
656 +
657 +  if (findEventsLog) findEventsLog->close();  
658 +
659 +  clog << "=============================================" << endl;  
660 +  clog << "Successfully completed OSUAnalysis." << endl;  
661 +  clog << "=============================================" << endl;  
662 +
663   }
664  
665   void
666 < OSUAnalysis::analyze (const edm::Event &event, const edm::EventSetup &setup)
666 > OSUAnalysis::produce (edm::Event &event, const edm::EventSetup &setup)
667   {
190
191
668    // Retrieve necessary collections from the event.
669 <  edm::Handle<BNtriggerCollection> triggers;
670 <  if (std::find(allNecessaryObjects.begin(), allNecessaryObjects.end(), "triggers") != allNecessaryObjects.end())
669 >
670 >  if (find(objectsToGet.begin(), objectsToGet.end(), "triggers") != objectsToGet.end())
671      event.getByLabel (triggers_, triggers);
672  
673 <  edm::Handle<BNjetCollection> jets;
674 <  if (std::find(allNecessaryObjects.begin(), allNecessaryObjects.end(), "jets") != allNecessaryObjects.end())
673 >  if (find(objectsToGet.begin(), objectsToGet.end(), "trigobjs") != objectsToGet.end())
674 >    event.getByLabel (trigobjs_, trigobjs);
675 >
676 >  if (find(objectsToGet.begin(), objectsToGet.end(), "jets") != objectsToGet.end())
677      event.getByLabel (jets_, jets);
678  
679 <  edm::Handle<BNmuonCollection> muons;
202 <  if (std::find(allNecessaryObjects.begin(), allNecessaryObjects.end(), "muons") != allNecessaryObjects.end())
679 >  if (find(objectsToGet.begin(), objectsToGet.end(), "muons") != objectsToGet.end())
680      event.getByLabel (muons_, muons);
681  
682 <  edm::Handle<BNelectronCollection> electrons;
206 <  if (std::find(allNecessaryObjects.begin(), allNecessaryObjects.end(), "electrons") != allNecessaryObjects.end())
682 >  if (find(objectsToGet.begin(), objectsToGet.end(), "electrons") != objectsToGet.end())
683      event.getByLabel (electrons_, electrons);
684  
685 <  edm::Handle<BNeventCollection> events;
210 <  if (std::find(allNecessaryObjects.begin(), allNecessaryObjects.end(), "events") != allNecessaryObjects.end())
685 >  if (find(objectsToGet.begin(), objectsToGet.end(), "events") != objectsToGet.end())
686      event.getByLabel (events_, events);
687  
688 <  edm::Handle<BNtauCollection> taus;
214 <  if (std::find(allNecessaryObjects.begin(), allNecessaryObjects.end(), "taus") != allNecessaryObjects.end())
688 >  if (find(objectsToGet.begin(), objectsToGet.end(), "taus") != objectsToGet.end())
689      event.getByLabel (taus_, taus);
690  
691 <  edm::Handle<BNmetCollection> mets;
218 <  if (std::find(allNecessaryObjects.begin(), allNecessaryObjects.end(), "mets") != allNecessaryObjects.end())
691 >  if (find(objectsToGet.begin(), objectsToGet.end(), "mets") != objectsToGet.end())
692      event.getByLabel (mets_, mets);
693  
694 <  edm::Handle<BNtrackCollection> tracks;
222 <  if (std::find(allNecessaryObjects.begin(), allNecessaryObjects.end(), "tracks") != allNecessaryObjects.end())
694 >  if (find(objectsToGet.begin(), objectsToGet.end(), "tracks") != objectsToGet.end())
695      event.getByLabel (tracks_, tracks);
696  
697 <  edm::Handle<BNgenjetCollection> genjets;
226 <  if (std::find(allNecessaryObjects.begin(), allNecessaryObjects.end(), "genjets") != allNecessaryObjects.end())
697 >  if (find(objectsToGet.begin(), objectsToGet.end(), "genjets") != objectsToGet.end())
698      event.getByLabel (genjets_, genjets);
699  
700 <  edm::Handle<BNmcparticleCollection> mcparticles;
230 <  if (std::find(allNecessaryObjects.begin(), allNecessaryObjects.end(), "mcparticles") != allNecessaryObjects.end())
700 >  if (find(objectsToGet.begin(), objectsToGet.end(), "mcparticles") != objectsToGet.end())
701      event.getByLabel (mcparticles_, mcparticles);
702  
703 <  edm::Handle<BNprimaryvertexCollection> primaryvertexs;
234 <  if (std::find(allNecessaryObjects.begin(), allNecessaryObjects.end(), "primaryvertexs") != allNecessaryObjects.end())
703 >  if (find(objectsToGet.begin(), objectsToGet.end(), "primaryvertexs") != objectsToGet.end())
704      event.getByLabel (primaryvertexs_, primaryvertexs);
705  
706 <  edm::Handle<BNbxlumiCollection> bxlumis;
238 <  if (std::find(allNecessaryObjects.begin(), allNecessaryObjects.end(), "bxlumis") != allNecessaryObjects.end())
706 >  if (find(objectsToGet.begin(), objectsToGet.end(), "bxlumis") != objectsToGet.end())
707      event.getByLabel (bxlumis_, bxlumis);
708  
709 <  edm::Handle<BNphotonCollection> photons;
242 <  if (std::find(allNecessaryObjects.begin(), allNecessaryObjects.end(), "photons") != allNecessaryObjects.end())
709 >  if (find(objectsToGet.begin(), objectsToGet.end(), "photons") != objectsToGet.end())
710      event.getByLabel (photons_, photons);
711  
712 <  edm::Handle<BNsuperclusterCollection> superclusters;
246 <  if (std::find(allNecessaryObjects.begin(), allNecessaryObjects.end(), "superclusters") != allNecessaryObjects.end())
712 >  if (find(objectsToGet.begin(), objectsToGet.end(), "superclusters") != objectsToGet.end())
713      event.getByLabel (superclusters_, superclusters);
714  
715 +  if (datasetType_ == "signalMC"){
716 +    if (find(objectsToGet.begin(), objectsToGet.end(), "stops") != objectsToGet.end())
717 +      event.getByLabel (stops_, stops);
718 +  }
719 +
720 +  if (useTrackCaloRhoCorr_) {
721 +    // Used only for pile-up correction of by-hand calculation of isolation energy.
722 +    // This rho collection is not available in all BEANs.
723 +    // For description of rho values for different jet reconstruction algorithms, see
724 +    // https://twiki.cern.ch/twiki/bin/view/CMS/JetAlgorithms#Algorithms
725 +    event.getByLabel ("kt6CaloJets","rho", rhokt6CaloJetsHandle_);
726 +  }
727 +
728 +  double masterScaleFactor = 1.0;
729 +
730 +  //get pile-up event weight
731 +  if (doPileupReweighting_ && datasetType_ != "data") {
732 +    //for "data" datasets, the numTruePV is always set to -1
733 +    if (events->at(0).numTruePV < 0) clog << "WARNING[OSUAnalysis::analyze]: Event has numTruePV<0.  Turning off pile-up reweighting." << endl;
734 +    else masterScaleFactor *= puWeight_->at (events->at (0).numTruePV);
735 +  }
736 +
737 +  stopCTauScaleFactor_ = 1.0;
738 +  if (datasetType_ == "signalMC" && regex_match (dataset_, regex ("stop.*to.*_.*mm.*")))
739 +    stopCTauScaleFactor_ = stopCTauWeight_->at (event);
740 +  masterScaleFactor *= stopCTauScaleFactor_;
741  
742    //loop over all channels
743  
744 +  auto_ptr<map<string, bool> > channelDecisions (new map<string, bool>);
745    for(uint currentChannelIndex = 0; currentChannelIndex != channels.size(); currentChannelIndex++){
746      channel currentChannel = channels.at(currentChannelIndex);
747  
748      flagMap individualFlags;
256    flagMap cumulativeFlags;
749      counterMap passingCounter;
750 +    cumulativeFlags.clear ();
751 +
752 +    for (map<string, vector<float>>::iterator iter = BNTreeBranchVals_.begin();
753 +         iter != BNTreeBranchVals_.end(); iter++) {
754 +      iter->second.clear();  // clear array
755 +    }
756  
757      bool triggerDecision = true;
758 <    if(currentChannel.triggers.size() != 0){  //triggers specified
759 <      triggerDecision = evaluateTriggers(currentChannel.triggers,triggers.product());
758 >    if(currentChannel.triggers.size() != 0 || currentChannel.triggersToVeto.size() != 0){  //triggers specified
759 >      triggerDecision = evaluateTriggers(currentChannel.triggers, currentChannel.triggersToVeto, triggers.product());
760        cutFlows_.at(currentChannelIndex)->at ("trigger") = triggerDecision;
761      }
762  
# Line 266 | Line 764 | OSUAnalysis::analyze (const edm::Event &
764      for(uint currentCutIndex = 0; currentCutIndex != currentChannel.cuts.size(); currentCutIndex++){
765        cut currentCut = currentChannel.cuts.at(currentCutIndex);
766  
767 <      for(uint currentObjectIndex = 0; currentObjectIndex != allNecessaryObjects.size(); currentObjectIndex++){
767 >      for(uint currentObjectIndex = 0; currentObjectIndex != objectsToFlag.size(); currentObjectIndex++){
768 >        string currentObject = objectsToFlag.at(currentObjectIndex);
769 >
770 >        //initialize maps to get ready to set cuts
771 >        individualFlags[currentObject].push_back (vector<pair<bool,bool> > ());
772 >        cumulativeFlags[currentObject].push_back (vector<pair<bool,bool> > ());
773 >
774 >      }
775 >
776 >      //set flags for all relevant objects
777 >      for(uint currentObjectIndex = 0; currentObjectIndex != objectsToFlag.size(); currentObjectIndex++){
778 >        string currentObject = objectsToFlag.at(currentObjectIndex);
779 >
780 >        int flagsForPairCutsIndex = max(int(currentCutIndex-1),0);
781  
271        string currentObject = allNecessaryObjects.at(currentObjectIndex);
272        individualFlags[currentObject].push_back (vector<bool> ());
273        cumulativeFlags[currentObject].push_back (vector<bool> ());
782  
783 <        if(currentObject == "jets") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,jets.product(),"jets");
784 <        else if(currentObject == "muons") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,muons.product(),"muons");
783 >        if     (currentObject == "jets")            setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,jets.product(),"jets");
784 >        else if(currentObject == "secondary jets")  setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,jets.product(),"secondary jets");
785 >        else if(currentObject == "secondary photons")  setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,photons.product(),"secondary photons");
786 >        else if(currentObject == "muons")           setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,muons.product(),"muons");
787 >        else if(currentObject == "secondary muons") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,muons.product(),"secondary muons");
788 >        else if(currentObject == "secondary electrons") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,electrons.product(),"secondary electrons");
789          else if(currentObject == "electrons") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,electrons.product(),"electrons");
790          else if(currentObject == "events") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,events.product(),"events");
791          else if(currentObject == "taus") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,taus.product(),"taus");
# Line 285 | Line 797 | OSUAnalysis::analyze (const edm::Event &
797          else if(currentObject == "bxlumis") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,bxlumis.product(),"bxlumis");
798          else if(currentObject == "photons") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,photons.product(),"photons");
799          else if(currentObject == "superclusters") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,superclusters.product(),"superclusters");
800 +        else if(currentObject == "trigobjs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,trigobjs.product(),"trigobjs");
801  
802  
290      }
291
803  
804 +        else if(currentObject == "muon-muon pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,muons.product(),muons.product(), \
805 +                                                                   cumulativeFlags.at("muons").at(flagsForPairCutsIndex), \
806 +                                                                   cumulativeFlags.at("muons").at(flagsForPairCutsIndex), \
807 +                                                                   "muon-muon pairs");
808 +
809 +        else if(currentObject == "muon-secondary muon pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,muons.product(),muons.product(), \
810 +                                                                             cumulativeFlags.at("muons").at(flagsForPairCutsIndex), \
811 +                                                                             cumulativeFlags.at("secondary muons").at(flagsForPairCutsIndex), \
812 +                                                                             "muon-secondary muon pairs");
813 +
814 +        else if(currentObject == "muon-secondary photon pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,muons.product(),photons.product(), \
815 +                                                                             cumulativeFlags.at("muons").at(flagsForPairCutsIndex), \
816 +                                                                             cumulativeFlags.at("secondary photons").at(flagsForPairCutsIndex), \
817 +                                                                             "muon-secondary photon pairs");
818 +        else if(currentObject == "muon-secondary jet pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,muons.product(),jets.product(), \
819 +                                                                             cumulativeFlags.at("muons").at(flagsForPairCutsIndex), \
820 +                                                                             cumulativeFlags.at("secondary jets").at(flagsForPairCutsIndex), \
821 +                                                                             "muon-secondary jet pairs");
822 +        else if(currentObject == "photon-secondary jet pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,photons.product(),jets.product(), \
823 +                                                                             cumulativeFlags.at("photons").at(flagsForPairCutsIndex), \
824 +                                                                             cumulativeFlags.at("secondary jets").at(flagsForPairCutsIndex), \
825 +                                                                             "photon-secondary jet pairs");
826 +
827 +        else if(currentObject == "electron-secondary jet pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,electrons.product(),jets.product(), \
828 +                                                                             cumulativeFlags.at("electrons").at(flagsForPairCutsIndex), \
829 +                                                                             cumulativeFlags.at("secondary jets").at(flagsForPairCutsIndex), \
830 +                                                                             "electron-secondary jet pairs");
831 +
832 +        else if(currentObject == "electron-secondary electron pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,electrons.product(),electrons.product(), \
833 +                                                                                     cumulativeFlags.at("electrons").at(flagsForPairCutsIndex), \
834 +                                                                                     cumulativeFlags.at("secondary electrons").at(flagsForPairCutsIndex), \
835 +                                                                                     "electron-secondary electron pairs");
836 +
837 +        else if(currentObject == "electron-electron pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,electrons.product(),electrons.product(), \
838 +                                                                           cumulativeFlags.at("electrons").at(flagsForPairCutsIndex), \
839 +                                                                           cumulativeFlags.at("electrons").at(flagsForPairCutsIndex), \
840 +                                                                           "electron-electron pairs");
841 +        else if(currentObject == "electron-muon pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,electrons.product(),muons.product(), \
842 +                                                                       cumulativeFlags.at("electrons").at(flagsForPairCutsIndex), \
843 +                                                                       cumulativeFlags.at("muons").at(flagsForPairCutsIndex), \
844 +                                                                       "electron-muon pairs");
845 +        else if(currentObject == "jet-jet pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,jets.product(),jets.product(), \
846 +                                                                 cumulativeFlags.at("jets").at(flagsForPairCutsIndex), \
847 +                                                                 cumulativeFlags.at("jets").at(flagsForPairCutsIndex), \
848 +                                                                 "jet-jet pairs");
849 +        else if(currentObject == "jet-secondary jet pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,jets.product(),jets.product(), \
850 +                                                                 cumulativeFlags.at("jets").at(flagsForPairCutsIndex), \
851 +                                                                 cumulativeFlags.at("secondary jets").at(flagsForPairCutsIndex),\
852 +                                                                 "jet-secondary jet pairs");
853 +        else if(currentObject == "electron-jet pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,electrons.product(),jets.product(), \
854 +                                                                      cumulativeFlags.at("electrons").at(flagsForPairCutsIndex), \
855 +                                                                      cumulativeFlags.at("jets").at(flagsForPairCutsIndex), \
856 +                                                                      "electron-jet pairs");
857 +        else if(currentObject == "electron-photon pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,electrons.product(),photons.product(), \
858 +                                                                      cumulativeFlags.at("electrons").at(flagsForPairCutsIndex), \
859 +                                                                      cumulativeFlags.at("photons").at(flagsForPairCutsIndex), \
860 +                                                                      "electron-photon pairs");
861 +        else if(currentObject == "photon-jet pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,photons.product(),jets.product(), \
862 +                                                                      cumulativeFlags.at("photons").at(flagsForPairCutsIndex), \
863 +                                                                      cumulativeFlags.at("jets").at(flagsForPairCutsIndex), \
864 +                                                                      "photon-jet pairs");
865 +        else if(currentObject == "muon-jet pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,muons.product(),jets.product(), \
866 +                                                                  cumulativeFlags.at("muons").at(flagsForPairCutsIndex), \
867 +                                                                  cumulativeFlags.at("jets").at(flagsForPairCutsIndex), \
868 +                                                                  "muon-jet pairs");
869 +        else if(currentObject == "muon-event pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,muons.product(),events.product(), \
870 +                                                                  cumulativeFlags.at("muons").at(flagsForPairCutsIndex), \
871 +                                                                  cumulativeFlags.at("events").at(flagsForPairCutsIndex), \
872 +                                                                  "muon-event pairs");
873 +        else if(currentObject == "met-jet pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,mets.product(),jets.product(), \
874 +                                                                  cumulativeFlags.at("mets").at(flagsForPairCutsIndex), \
875 +                                                                  cumulativeFlags.at("jets").at(flagsForPairCutsIndex), \
876 +                                                                  "met-jet pairs");
877 +        else if(currentObject == "track-jet pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,tracks.product(),jets.product(), \
878 +                                                                 cumulativeFlags.at("tracks").at(flagsForPairCutsIndex), \
879 +                                                                 cumulativeFlags.at("jets").at(flagsForPairCutsIndex), \
880 +                                                                 "track-jet pairs");
881 +        else if(currentObject == "muon-photon pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,muons.product(),photons.product(), \
882 +                                                                  cumulativeFlags.at("muons").at(flagsForPairCutsIndex), \
883 +                                                                  cumulativeFlags.at("photons").at(flagsForPairCutsIndex), \
884 +                                                                  "muon-photon pairs");
885 +        else if(currentObject == "track-event pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,tracks.product(),events.product(),
886 +                                                                     cumulativeFlags.at("tracks").at(flagsForPairCutsIndex),
887 +                                                                     cumulativeFlags.at("events").at(flagsForPairCutsIndex),
888 +                                                                     "track-event pairs");
889 +        else if(currentObject == "electron-track pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,electrons.product(),tracks.product(),
890 +                                                                        cumulativeFlags.at("electrons").at(flagsForPairCutsIndex),
891 +                                                                        cumulativeFlags.at("tracks").at(flagsForPairCutsIndex),
892 +                                                                        "electron-track pairs");
893 +        else if(currentObject == "muon-track pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,muons.product(),tracks.product(),
894 +                                                                    cumulativeFlags.at("muons").at(flagsForPairCutsIndex),
895 +                                                                    cumulativeFlags.at("tracks").at(flagsForPairCutsIndex),
896 +                                                                    "muon-track pairs");
897 +        else if(currentObject == "muon-tau pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,muons.product(),taus.product(),
898 +                                                                  cumulativeFlags.at("muons").at(flagsForPairCutsIndex),
899 +                                                                  cumulativeFlags.at("taus").at(flagsForPairCutsIndex),
900 +                                                                  "muon-tau pairs");
901 +        else if(currentObject == "tau-tau pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,taus.product(),taus.product(),
902 +                                                                 cumulativeFlags.at("taus").at(flagsForPairCutsIndex),
903 +                                                                 cumulativeFlags.at("taus").at(flagsForPairCutsIndex),
904 +                                                                 "tau-tau pairs");
905 +        else if(currentObject == "tau-track pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,taus .product(),tracks.product(),
906 +                                                                   cumulativeFlags.at("taus").at(flagsForPairCutsIndex),
907 +                                                                   cumulativeFlags.at("tracks").at(flagsForPairCutsIndex),
908 +                                                                   "tau-track pairs");
909 +        else if(currentObject == "electron-trigobj pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,electrons.product(),trigobjs.product(),
910 +                                                                          cumulativeFlags.at("electrons").at(flagsForPairCutsIndex),
911 +                                                                          cumulativeFlags.at("trigobjs").at(flagsForPairCutsIndex),
912 +                                                                          "electron-trigobj pairs");
913 +        else if(currentObject == "muon-trigobj pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,muons.product(),trigobjs.product(),
914 +                                                                      cumulativeFlags.at("muons").at(flagsForPairCutsIndex),
915 +                                                                      cumulativeFlags.at("trigobjs").at(flagsForPairCutsIndex),
916 +                                                                      "muon-trigobj pairs");
917  
918 <    }//end loop over all cuts
919 <
918 >        if(currentObject == "stops" && datasetType_ == "signalMC") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,stops.product(),"stops");
919 >      }
920  
921  
922  
923 +    }//end loop over all cuts
924      //use cumulative flags to apply cuts at event level
925  
926 +    //a vector to store cumulative cut descisions after each cut.
927 +    vector<bool> eventPassedPreviousCuts;
928      bool eventPassedAllCuts = true;
302
929      //apply trigger (true if none were specified)
930      eventPassedAllCuts = eventPassedAllCuts && triggerDecision;
931  
306
932      for(uint currentCutIndex = 0; currentCutIndex != currentChannel.cuts.size(); currentCutIndex++){
933  
934        //loop over all objects and count how many passed the cumulative selection up to this point
935        cut currentCut = currentChannel.cuts.at(currentCutIndex);
936        int numberPassing = 0;
937  
938 <      for (uint object = 0; object != cumulativeFlags[currentCut.inputCollection].at(currentCutIndex).size() ; object++)
939 <          if(cumulativeFlags[currentCut.inputCollection].at(currentCutIndex).at(object)) numberPassing++;
940 <
316 <
938 >      for (uint object = 0; object != cumulativeFlags.at(currentCut.inputCollection).at(currentCutIndex).size() ; object++){
939 >        if(cumulativeFlags.at(currentCut.inputCollection).at(currentCutIndex).at(object).first) numberPassing++;
940 >      }
941        bool cutDecision = evaluateComparison(numberPassing,currentCut.eventComparativeOperator,currentCut.numberRequired);
942        cutFlows_.at(currentChannelIndex)->at (currentCut.name) = cutDecision;
319
943        eventPassedAllCuts = eventPassedAllCuts && cutDecision;
944 +      eventPassedPreviousCuts.push_back(eventPassedAllCuts);
945 +    }
946 +    //applying all appropriate scale factors
947 +    double scaleFactor = masterScaleFactor;
948 +    muonScaleFactor_ = electronScaleFactor_ = bTagScaleFactor_ = 1.0;
949 +
950 +    if(applyLeptonSF_ && datasetType_ != "data"){
951 +      //only apply SFs if we've cut on this object
952 +      if(find(objectsToCut.begin(),objectsToCut.end(),"muons") != objectsToCut.end ()){
953 +        flagPair muonFlags;
954 +        //get the last valid flags in the flag map
955 +        for (int i = cumulativeFlags.at("muons").size() - 1; i >= 0; i--){
956 +          if (cumulativeFlags.at("muons").at(i).size()){
957 +            muonFlags = cumulativeFlags.at("muons").at(i);
958 +            break;
959 +          }
960 +        }
961 +        //apply the weight for each of those objects
962 +        for (uint muonIndex = 0; muonIndex != muonFlags.size(); muonIndex++){
963 +          if(!muonFlags.at(muonIndex).second) continue;
964 +          muonScaleFactor_ *= muonSFWeight_->at (muons->at(muonIndex).eta);
965 +        }
966 +      }
967 +      //only apply SFs if we've cut on this object
968 +      if(find(objectsToCut.begin(),objectsToCut.end(),"electrons") != objectsToCut.end ()){
969 +        flagPair electronFlags;
970 +        //get the last valid flags in the flag map
971 +        for (int i = cumulativeFlags.at("electrons").size() - 1; i >= 0; i--){
972 +          if (cumulativeFlags.at("electrons").at(i).size()){
973 +            electronFlags = cumulativeFlags.at("electrons").at(i);
974 +            break;
975 +          }
976 +        }
977 +        //apply the weight for each of those objects
978 +        for (uint electronIndex = 0; electronIndex != electronFlags.size(); electronIndex++){
979 +          if(!electronFlags.at(electronIndex).second) continue;
980 +          electronScaleFactor_ *= electronSFWeight_->at (electrons->at(electronIndex).eta, electrons->at(electronIndex).pt);
981 +        }
982 +      }
983 +    }
984 +    if(applyBtagSF_ && datasetType_ != "data"){
985 +      //only apply SFs if we've cut on this object
986 +      if(find(objectsToCut.begin(),objectsToCut.end(),"jets") != objectsToCut.end ()){
987 +        flagPair jetFlags;
988 +        vector<double> jetSFs;
989 +        //get the last valid flags in the flag map
990 +        for (int i = cumulativeFlags.at("jets").size() - 1; i >= 0; i--){
991 +          if (cumulativeFlags.at("jets").at(i).size()){
992 +            jetFlags = cumulativeFlags.at("jets").at(i);
993 +            break;
994 +          }
995 +        }
996 +        //apply the weight for each of those objects
997 +        for (uint jetIndex = 0; jetIndex != jetFlags.size(); jetIndex++){
998 +          if(!jetFlags.at(jetIndex).second) continue;
999 +          double jetSFTmp = bTagSFWeight_->sflookup(jets->at(jetIndex).btagCombinedSecVertex, jets->at(jetIndex).pt, jets->at(jetIndex).flavour, jets->at(jetIndex).eta);
1000 +          jetSFs.push_back(jetSFTmp);
1001 +        }
1002 +        bTagScaleFactor_ *= bTagSFWeight_->weight( jetSFs, minBtag_);
1003 +      }
1004 +    }
1005 +    scaleFactor *= muonScaleFactor_;
1006 +    scaleFactor *= electronScaleFactor_;
1007 +    scaleFactor *= bTagScaleFactor_;
1008 +    cutFlows_.at(currentChannelIndex)->fillCutFlow(scaleFactor);
1009 +
1010 +    if (printEventInfo_ && eventPassedAllCuts) {
1011 +      // Write information about event to screen, for testing purposes.
1012 +      clog << "Event passed all cuts in channel " <<  currentChannel.name
1013 +           << ":  run:lumi:evt=  "  << events->at(0).run
1014 +           << ":" << events->at(0).lumi
1015 +           << ":" << events->at(0).evt
1016 +           << endl;
1017 +      if (findEventsLog) {
1018 +        (*findEventsLog) << events->at(0).run
1019 +                         << ":" << events->at(0).lumi
1020 +                         << ":" << events->at(0).evt << endl;
1021 +      }
1022  
1023      }
1024  
324    cutFlows_.at(currentChannelIndex)->fillCutFlow();
1025  
1026 +    //filling histograms
1027 +    for(uint currentCut = 0; currentCut != oneDHists_.at(currentChannelIndex).size(); currentCut++){//loop over all the directories in each channel.
1028 +      uint currentDir;
1029 +      if (!GetPlotsAfterEachCut_) { currentDir =  currentChannel.cuts.size() - oneDHists_.at(currentChannelIndex).size(); } //if GetPlotsAfterEachCut_ is false, set currentDir point to the last cut.
1030 +      else{
1031 +        currentDir = currentCut;
1032 +      }
1033  
1034  
1035 <    if(!eventPassedAllCuts)continue;
1035 >      if(eventPassedPreviousCuts.at(currentDir)){
1036  
1037 +        for (uint histogramIndex = 0; histogramIndex != histograms.size(); histogramIndex++){
1038 +          histogram currentHistogram = histograms.at(histogramIndex);
1039  
1040 <    TVector3 vertexPosition;
332 <    vector<bool> vertexFlags = cumulativeFlags["primaryvertexs"].back();
1040 >          if (cumulativeFlags.count(currentHistogram.inputCollection) == 0) clog << "Error: no flags found for collection:  " << currentHistogram.inputCollection << ", will cause a seg fault" << endl;
1041  
1042 <    for (uint vertexIndex = 0; vertexIndex != vertexFlags.size(); vertexIndex++){
1043 <      if(!vertexFlags.at(vertexIndex)) continue;
1042 >          if(currentHistogram.inputVariables.size() == 1){
1043 >            TH1D* histo;
1044 >            histo = oneDHists_.at(currentChannelIndex).at(currentCut).at(currentHistogram.name);
1045 >            if     (currentHistogram.inputCollection == "jets")            fill1DHistogram(histo,currentHistogram,jets.product(),cumulativeFlags.at("jets").at(currentDir),scaleFactor);
1046 >            else if(currentHistogram.inputCollection == "secondary jets")  fill1DHistogram(histo,currentHistogram,jets.product(),cumulativeFlags.at("secondary jets").at(currentDir),scaleFactor);
1047 >            else if(currentHistogram.inputCollection == "secondary photons")  fill1DHistogram(histo,currentHistogram,photons.product(),cumulativeFlags.at("secondary photons").at(currentDir),scaleFactor);
1048 >            else if(currentHistogram.inputCollection == "muons")           fill1DHistogram(histo,currentHistogram,muons.product(),cumulativeFlags.at("muons").at(currentDir),scaleFactor);
1049 >            else if(currentHistogram.inputCollection == "secondary muons") fill1DHistogram(histo,currentHistogram,muons.product(),cumulativeFlags.at("secondary muons").at(currentDir),scaleFactor);
1050 >            else if(currentHistogram.inputCollection == "secondary electrons") fill1DHistogram(histo,currentHistogram,electrons.product(),cumulativeFlags.at("secondary electrons").at(currentDir),scaleFactor);
1051 >            else if(currentHistogram.inputCollection == "muon-muon pairs") fill1DHistogram(histo,currentHistogram,muons.product(),muons.product(), \
1052 >                                                                                           cumulativeFlags.at("muons").at(currentDir),cumulativeFlags.at("muons").at(currentDir), \
1053 >                                                                                           cumulativeFlags.at("muon-muon pairs").at(currentDir),scaleFactor);
1054 >            else if(currentHistogram.inputCollection == "muon-secondary muon pairs") fill1DHistogram(histo,currentHistogram,muons.product(),muons.product(), \
1055 >                                                                                                     cumulativeFlags.at("muons").at(currentDir),cumulativeFlags.at("secondary muons").at(currentDir), \
1056 >                                                                                                     cumulativeFlags.at("muon-secondary muon pairs").at(currentDir),scaleFactor);
1057 >             else if(currentHistogram.inputCollection == "muon-secondary photon pairs") fill1DHistogram(histo,currentHistogram,muons.product(),photons.product(), \
1058 >                                                                                                     cumulativeFlags.at("muons").at(currentDir),cumulativeFlags.at("secondary photons").at(currentDir), \
1059 >                                                                                                     cumulativeFlags.at("muon-secondary photon pairs").at(currentDir),scaleFactor);
1060 >             else if(currentHistogram.inputCollection == "muon-secondary jet pairs") fill1DHistogram(histo,currentHistogram,muons.product(),jets.product(), \
1061 >                                                                                                     cumulativeFlags.at("muons").at(currentDir),cumulativeFlags.at("secondary jets").at(currentDir), \
1062 >                                                                                                     cumulativeFlags.at("muon-secondary jet pairs").at(currentDir),scaleFactor);
1063 >             else if(currentHistogram.inputCollection == "photon-secondary jet pairs") fill1DHistogram(histo,currentHistogram,photons.product(),jets.product(), \
1064 >                                                                                                     cumulativeFlags.at("photons").at(currentDir),cumulativeFlags.at("secondary jets").at(currentDir), \
1065 >                                                                                                     cumulativeFlags.at("photon-secondary jet pairs").at(currentDir),scaleFactor);
1066 >             else if(currentHistogram.inputCollection == "electron-secondary jet pairs") fill1DHistogram(histo,currentHistogram,electrons.product(),jets.product(), \
1067 >                                                                                                     cumulativeFlags.at("electrons").at(currentDir),cumulativeFlags.at("secondary jets").at(currentDir), \
1068 >                                                                                                     cumulativeFlags.at("electron-secondary jet pairs").at(currentDir),scaleFactor);
1069 >
1070 >            else if(currentHistogram.inputCollection == "electrons") fill1DHistogram(histo,currentHistogram,electrons.product(),cumulativeFlags.at("electrons").at(currentDir),scaleFactor);
1071 >            else if(currentHistogram.inputCollection == "electron-electron pairs") fill1DHistogram(histo,currentHistogram,electrons.product(),electrons.product(),\
1072 >                                                                                                   cumulativeFlags.at("electrons").at(currentDir),cumulativeFlags.at("electrons").at(currentDir),\
1073 >                                                                                                   cumulativeFlags.at("electron-electron pairs").at(currentDir),scaleFactor);
1074 >            else if(currentHistogram.inputCollection == "jet-jet pairs") fill1DHistogram(histo,currentHistogram,jets.product(),jets.product(),\
1075 >                                                                                         cumulativeFlags.at("jets").at(currentDir),cumulativeFlags.at("jets").at(currentDir),\
1076 >                                                                                         cumulativeFlags.at("jet-jet pairs").at(currentDir),scaleFactor);
1077 >             else if(currentHistogram.inputCollection == "jet-secondary jet pairs") fill1DHistogram(histo,currentHistogram,jets.product(),jets.product(), \
1078 >                                                                                                     cumulativeFlags.at("jets").at(currentDir),cumulativeFlags.at("secondary jets").at(currentDir), \
1079 >                                                                                                     cumulativeFlags.at("jet-secondary jet pairs").at(currentDir),scaleFactor);
1080 >
1081 >            else if(currentHistogram.inputCollection == "electron-secondary electron pairs") fill1DHistogram(histo,currentHistogram,electrons.product(),electrons.product(), \
1082 >                                                                                                             cumulativeFlags.at("electrons").at(currentDir),cumulativeFlags.at("secondary electrons").at(currentDir), \
1083 >                                                                                                             cumulativeFlags.at("electron-secondary electron pairs").at(currentDir),scaleFactor);
1084 >            else if(currentHistogram.inputCollection == "electron-muon pairs") fill1DHistogram(histo,currentHistogram, electrons.product(),muons.product(), \
1085 >                                                                                               cumulativeFlags.at("electrons").at(currentDir),cumulativeFlags.at("muons").at(currentDir),
1086 >                                                                                               cumulativeFlags.at("electron-muon pairs").at(currentDir),scaleFactor);
1087 >            else if(currentHistogram.inputCollection == "electron-jet pairs") fill1DHistogram(histo,currentHistogram, electrons.product(),jets.product(), \
1088 >                                                                                              cumulativeFlags.at("electrons").at(currentDir),cumulativeFlags.at("jets").at(currentDir),
1089 >                                                                                              cumulativeFlags.at("electron-jet pairs").at(currentDir),scaleFactor);
1090 >            else if(currentHistogram.inputCollection == "photon-jet pairs") fill1DHistogram(histo,currentHistogram, photons.product(),jets.product(), \
1091 >                                                                                              cumulativeFlags.at("photons").at(currentDir),cumulativeFlags.at("jets").at(currentDir),
1092 >                                                                                              cumulativeFlags.at("photon-jet pairs").at(currentDir),scaleFactor);
1093 >            else if(currentHistogram.inputCollection == "muon-jet pairs") fill1DHistogram(histo,currentHistogram, muons.product(),jets.product(), \
1094 >                                                                                          cumulativeFlags.at("muons").at(currentDir),cumulativeFlags.at("jets").at(currentDir),
1095 >                                                                                          cumulativeFlags.at("muon-jet pairs").at(currentDir),scaleFactor);
1096 >            else if(currentHistogram.inputCollection == "muon-event pairs") fill1DHistogram(histo,currentHistogram, muons.product(),events.product(), \
1097 >                                                                                          cumulativeFlags.at("muons").at(currentDir),cumulativeFlags.at("events").at(currentDir),
1098 >                                                                                          cumulativeFlags.at("muon-event pairs").at(currentDir),scaleFactor);
1099 >            else if(currentHistogram.inputCollection == "met-jet pairs")  fill1DHistogram(histo,currentHistogram, mets.product(),jets.product(), \
1100 >                                                                                          cumulativeFlags.at("mets").at(currentDir),cumulativeFlags.at("jets").at(currentDir),
1101 >                                                                                          cumulativeFlags.at("met-jet pairs").at(currentDir),scaleFactor);
1102 >            else if(currentHistogram.inputCollection == "track-jet pairs")  fill1DHistogram(histo,currentHistogram,tracks.product(),jets.product(), \
1103 >                                                                                          cumulativeFlags.at("tracks").at(currentDir),cumulativeFlags.at("jets").at(currentDir),
1104 >                                                                                          cumulativeFlags.at("track-jet pairs").at(currentDir),scaleFactor);
1105 >            else if(currentHistogram.inputCollection == "muon-photon pairs") fill1DHistogram(histo,currentHistogram, muons.product(),photons.product(), \
1106 >                                                                                          cumulativeFlags.at("muons").at(currentDir),cumulativeFlags.at("photons").at(currentDir),
1107 >                                                                                          cumulativeFlags.at("muon-photon pairs").at(currentDir),scaleFactor);
1108 >            else if(currentHistogram.inputCollection == "electron-photon pairs") fill1DHistogram(histo,currentHistogram, electrons.product(),photons.product(), \
1109 >                                                                                          cumulativeFlags.at("electrons").at(currentDir),cumulativeFlags.at("photons").at(currentDir),
1110 >                                                                                          cumulativeFlags.at("electron-photon pairs").at(currentDir),scaleFactor);
1111 >            else if(currentHistogram.inputCollection == "electron-track pairs") fill1DHistogram(histo,currentHistogram, electrons.product(),tracks.product(),
1112 >                                                                                                cumulativeFlags.at("electrons").at(currentDir),cumulativeFlags.at("tracks").at(currentDir),
1113 >                                                                                                cumulativeFlags.at("electron-track pairs").at(currentDir),scaleFactor);
1114 >            else if(currentHistogram.inputCollection == "muon-track pairs") fill1DHistogram(histo,currentHistogram, muons.product(),tracks.product(),
1115 >                                                                                            cumulativeFlags.at("muons").at(currentDir),cumulativeFlags.at("tracks").at(currentDir),
1116 >                                                                                            cumulativeFlags.at("muon-track pairs").at(currentDir),scaleFactor);
1117 >            else if(currentHistogram.inputCollection == "muon-tau pairs") fill1DHistogram(histo,currentHistogram, muons.product(),taus.product(),
1118 >                                                                                          cumulativeFlags.at("muons").at(currentDir),cumulativeFlags.at("taus").at(currentDir),
1119 >                                                                                          cumulativeFlags.at("muon-tau pairs").at(currentDir),scaleFactor);
1120 >            else if(currentHistogram.inputCollection == "tau-tau pairs") fill1DHistogram(histo,currentHistogram, taus.product(),taus.product(),
1121 >                                                                                         cumulativeFlags.at("taus").at(currentDir),cumulativeFlags.at("taus").at(currentDir),
1122 >                                                                                         cumulativeFlags.at("tau-tau pairs").at(currentDir),scaleFactor);
1123 >            else if(currentHistogram.inputCollection == "tau-track pairs") fill1DHistogram(histo,currentHistogram, taus.product(),tracks.product(),
1124 >                                                                                           cumulativeFlags.at("taus").at(currentDir),cumulativeFlags.at("tracks").at(currentDir),
1125 >                                                                                           cumulativeFlags.at("tau-track pairs").at(currentDir),scaleFactor);
1126 >            else if(currentHistogram.inputCollection == "electron-trigobj pairs") fill1DHistogram(histo,currentHistogram, electrons.product(),trigobjs.product(),
1127 >                                                                                                  cumulativeFlags.at("electrons").at(currentDir),cumulativeFlags.at("trigobjs").at(currentDir),
1128 >                                                                                                  cumulativeFlags.at("electron-trigobj pairs").at(currentDir),scaleFactor);
1129 >            else if(currentHistogram.inputCollection == "muon-trigobj pairs") fill1DHistogram(histo,currentHistogram, muons.product(),trigobjs.product(),
1130 >                                                                                              cumulativeFlags.at("muons").at(currentDir),cumulativeFlags.at("trigobjs").at(currentDir),
1131 >                                                                                              cumulativeFlags.at("muon-trigobj pairs").at(currentDir),scaleFactor);
1132 >
1133 >            else if(currentHistogram.inputCollection == "events") fill1DHistogram(histo,currentHistogram,events.product(),cumulativeFlags.at("events").at(currentDir),scaleFactor);
1134 >            else if(currentHistogram.inputCollection == "taus") fill1DHistogram(histo,currentHistogram,taus.product(),cumulativeFlags.at("taus").at(currentDir),scaleFactor);
1135 >            else if(currentHistogram.inputCollection == "mets") fill1DHistogram(histo,currentHistogram,mets.product(),cumulativeFlags.at("mets").at(currentDir),scaleFactor);
1136 >            else if(currentHistogram.inputCollection == "tracks") fill1DHistogram(histo,currentHistogram,tracks.product(),cumulativeFlags.at("tracks").at(currentDir),scaleFactor);
1137 >            else if(currentHistogram.inputCollection == "genjets") fill1DHistogram(histo,currentHistogram,genjets.product(),cumulativeFlags.at("genjets").at(currentDir),scaleFactor);
1138 >            else if(currentHistogram.inputCollection == "mcparticles") fill1DHistogram(histo,currentHistogram,mcparticles.product(),cumulativeFlags.at("mcparticles").at(currentDir),scaleFactor);
1139 >            else if(currentHistogram.inputCollection == "primaryvertexs") fill1DHistogram(histo,currentHistogram,primaryvertexs.product(),cumulativeFlags.at("primaryvertexs").at(currentDir),scaleFactor);
1140 >            else if(currentHistogram.inputCollection == "bxlumis") fill1DHistogram(histo,currentHistogram,bxlumis.product(),cumulativeFlags.at("bxlumis").at(currentDir),scaleFactor);
1141 >            else if(currentHistogram.inputCollection == "photons") fill1DHistogram(histo,currentHistogram,photons.product(),cumulativeFlags.at("photons").at(currentDir),scaleFactor);
1142 >            else if(currentHistogram.inputCollection == "superclusters") fill1DHistogram(histo,currentHistogram,superclusters.product(),cumulativeFlags.at("superclusters").at(currentDir),scaleFactor);
1143 >            else if(currentHistogram.inputCollection == "trigobjs") fill1DHistogram(histo,currentHistogram,trigobjs.product(),cumulativeFlags.at("trigobjs").at(currentDir),scaleFactor);
1144 >            else if(currentHistogram.inputCollection == "stops" && datasetType_ == "signalMC") fill1DHistogram(histo,currentHistogram,stops.product(),cumulativeFlags.at("stops").at(currentDir),scaleFactor);
1145 >          }
1146 >          else if(currentHistogram.inputVariables.size() == 2){
1147 >            TH2D* histo;
1148 >            histo = twoDHists_.at(currentChannelIndex).at(currentCut).at(currentHistogram.name);
1149 >            if     (currentHistogram.inputCollection == "jets")            fill2DHistogram(histo,currentHistogram,jets.product(),cumulativeFlags.at("jets").at(currentDir),scaleFactor);
1150 >            else if(currentHistogram.inputCollection == "secondary jets")  fill2DHistogram(histo,currentHistogram,jets.product(),cumulativeFlags.at("secondary jets").at(currentDir),scaleFactor);
1151 >            else if(currentHistogram.inputCollection == "secondary photons")  fill2DHistogram(histo,currentHistogram,photons.product(),cumulativeFlags.at("secondary photons").at(currentDir),scaleFactor);
1152 >            else if(currentHistogram.inputCollection == "muons")           fill2DHistogram(histo,currentHistogram,muons.product(),cumulativeFlags.at("muons").at(currentDir),scaleFactor);
1153 >            else if(currentHistogram.inputCollection == "secondary muons") fill2DHistogram(histo,currentHistogram,muons.product(),cumulativeFlags.at("secondary muons").at(currentDir),scaleFactor);
1154 >            else if(currentHistogram.inputCollection == "muon-muon pairs") fill2DHistogram(histo,currentHistogram,muons.product(),muons.product(), \
1155 >                                                                                           cumulativeFlags.at("muons").at(currentDir),cumulativeFlags.at("muons").at(currentDir), \
1156 >                                                                                           cumulativeFlags.at("muon-muon pairs").at(currentDir),scaleFactor);
1157 >            else if(currentHistogram.inputCollection == "muon-secondary muon pairs") fill2DHistogram(histo,currentHistogram,muons.product(),muons.product(), \
1158 >                                                                                                     cumulativeFlags.at("muons").at(currentDir),cumulativeFlags.at("secondary muons").at(currentDir), \
1159 >                                                                                                     cumulativeFlags.at("muon-secondary muon pairs").at(currentDir),scaleFactor);
1160 >            else if(currentHistogram.inputCollection == "muon-secondary photon pairs") fill2DHistogram(histo,currentHistogram,muons.product(),photons.product(), \
1161 >                                                                                                     cumulativeFlags.at("muons").at(currentDir),cumulativeFlags.at("secondary photons").at(currentDir), \
1162 >                                                                                                     cumulativeFlags.at("muon-secondary photon pairs").at(currentDir),scaleFactor);
1163 >            else if(currentHistogram.inputCollection == "muon-secondary jet pairs") fill2DHistogram(histo,currentHistogram,muons.product(),jets.product(), \
1164 >                                                                                                     cumulativeFlags.at("muons").at(currentDir),cumulativeFlags.at("secondary jets").at(currentDir), \
1165 >                                                                                                     cumulativeFlags.at("muon-secondary jet pairs").at(currentDir),scaleFactor);
1166 >            else if(currentHistogram.inputCollection == "electron-secondary jet pairs") fill2DHistogram(histo,currentHistogram,electrons.product(),jets.product(), \
1167 >                                                                                                     cumulativeFlags.at("electrons").at(currentDir),cumulativeFlags.at("secondary jets").at(currentDir), \
1168 >                                                                                                     cumulativeFlags.at("electron-secondary jet pairs").at(currentDir),scaleFactor);
1169 >            else if(currentHistogram.inputCollection == "photon-secondary jet pairs") fill2DHistogram(histo,currentHistogram,photons.product(),jets.product(), \
1170 >                                                                                                     cumulativeFlags.at("photons").at(currentDir),cumulativeFlags.at("secondary jets").at(currentDir), \
1171 >                                                                                                     cumulativeFlags.at("photon-secondary jet pairs").at(currentDir),scaleFactor);
1172 >            else if(currentHistogram.inputCollection == "electrons") fill2DHistogram(histo,currentHistogram,electrons.product(),cumulativeFlags.at("electrons").at(currentDir),scaleFactor);
1173 >            else if(currentHistogram.inputCollection == "secondary electrons") fill2DHistogram(histo,currentHistogram,electrons.product(),cumulativeFlags.at("secondary electrons").at(currentDir),scaleFactor);
1174 >            else if(currentHistogram.inputCollection == "electron-electron pairs") fill2DHistogram(histo,currentHistogram,electrons.product(),electrons.product(), \
1175 >                                                                                                   cumulativeFlags.at("electrons").at(currentDir),cumulativeFlags.at("electrons").at(currentDir), \
1176 >                                                                                                   cumulativeFlags.at("electron-electron pairs").at(currentDir),scaleFactor);
1177 >            else if(currentHistogram.inputCollection == "jet-jet pairs") fill2DHistogram(histo,currentHistogram,jets.product(),jets.product(), \
1178 >                                                                                         cumulativeFlags.at("jets").at(currentDir),cumulativeFlags.at("jets").at(currentDir), \
1179 >                                                                                         cumulativeFlags.at("jet-jet pairs").at(currentDir),scaleFactor);
1180 >            else if(currentHistogram.inputCollection == "electron-secondary electron pairs") fill2DHistogram(histo,currentHistogram,electrons.product(),electrons.product(), \
1181 >                                                                                                             cumulativeFlags.at("electrons").at(currentDir),cumulativeFlags.at("secondary electrons").at(currentDir), \
1182 >                                                                                                             cumulativeFlags.at("electron-secondary electron pairs").at(currentDir),scaleFactor);
1183 >            else if(currentHistogram.inputCollection == "electron-muon pairs") fill2DHistogram(histo,currentHistogram,electrons.product(),muons.product(), \
1184 >                                                                                               cumulativeFlags.at("electrons").at(currentDir),cumulativeFlags.at("muons").at(currentDir), \
1185 >                                                                                               cumulativeFlags.at("electron-muon pairs").at(currentDir),scaleFactor);
1186 >            else if(currentHistogram.inputCollection == "electron-jet pairs") fill2DHistogram(histo,currentHistogram,electrons.product(),jets.product(), \
1187 >                                                                                              cumulativeFlags.at("electrons").at(currentDir),cumulativeFlags.at("jets").at(currentDir), \
1188 >                                                                                              cumulativeFlags.at("electron-jet pairs").at(currentDir),scaleFactor);
1189 >            else if(currentHistogram.inputCollection == "electron-photon pairs") fill2DHistogram(histo,currentHistogram,electrons.product(),photons.product(), \
1190 >                                                                                              cumulativeFlags.at("electrons").at(currentDir),cumulativeFlags.at("photons").at(currentDir), \
1191 >                                                                                              cumulativeFlags.at("electron-photon pairs").at(currentDir),scaleFactor);
1192 >            else if(currentHistogram.inputCollection == "muon-jet pairs") fill2DHistogram(histo,currentHistogram,muons.product(),jets.product(), \
1193 >                                                                                          cumulativeFlags.at("muons").at(currentDir),cumulativeFlags.at("jets").at(currentDir), \
1194 >                                                                                          cumulativeFlags.at("muon-jet pairs").at(currentDir),scaleFactor);
1195 >            else if(currentHistogram.inputCollection == "muon-event pairs") fill2DHistogram(histo,currentHistogram,muons.product(),events.product(), \
1196 >                                                                                          cumulativeFlags.at("muons").at(currentDir),cumulativeFlags.at("events").at(currentDir), \
1197 >                                                                                          cumulativeFlags.at("muon-event pairs").at(currentDir),scaleFactor);
1198 >            else if(currentHistogram.inputCollection == "met-jet pairs") fill2DHistogram(histo,currentHistogram,mets.product(),jets.product(), \
1199 >                                                                                         cumulativeFlags.at("mets").at(currentDir),cumulativeFlags.at("jets").at(currentDir), \
1200 >                                                                                         cumulativeFlags.at("met-jet pairs").at(currentDir),scaleFactor);
1201 >            else if(currentHistogram.inputCollection == "track-jet pairs") fill2DHistogram(histo,currentHistogram,tracks.product(),jets.product(),
1202 >                                                                                         cumulativeFlags.at("tracks").at(currentDir),cumulativeFlags.at("jets").at(currentDir), \
1203 >                                                                                         cumulativeFlags.at("track-jet pairs").at(currentDir),scaleFactor);
1204 >            else if(currentHistogram.inputCollection == "photon-jet pairs") fill2DHistogram(histo,currentHistogram,photons.product(),jets.product(), \
1205 >                                                                                          cumulativeFlags.at("photons").at(currentDir),cumulativeFlags.at("jets").at(currentDir), \
1206 >                                                                                          cumulativeFlags.at("photon-jet pairs").at(currentDir),scaleFactor);
1207 >            else if(currentHistogram.inputCollection == "muon-photon pairs") fill2DHistogram(histo,currentHistogram,muons.product(),photons.product(), \
1208 >                                                                                          cumulativeFlags.at("muons").at(currentDir),cumulativeFlags.at("photons").at(currentDir), \
1209 >                                                                                          cumulativeFlags.at("muon-photon pairs").at(currentDir),scaleFactor);
1210 >            else if(currentHistogram.inputCollection == "electron-track pairs") fill2DHistogram(histo,currentHistogram,electrons.product(),tracks.product(),
1211 >                                                                                                cumulativeFlags.at("electrons").at(currentDir),cumulativeFlags.at("tracks").at(currentDir),
1212 >                                                                                                cumulativeFlags.at("electron-track pairs").at(currentDir),scaleFactor);
1213 >            else if(currentHistogram.inputCollection == "muon-track pairs") fill2DHistogram(histo,currentHistogram,muons.product(),tracks.product(),
1214 >                                                                                            cumulativeFlags.at("muons").at(currentDir),cumulativeFlags.at("tracks").at(currentDir),
1215 >                                                                                            cumulativeFlags.at("muon-track pairs").at(currentDir),scaleFactor);
1216 >            else if(currentHistogram.inputCollection == "muon-tau pairs") fill2DHistogram(histo,currentHistogram,muons.product(),taus.product(),
1217 >                                                                                          cumulativeFlags.at("muons").at(currentDir),cumulativeFlags.at("taus").at(currentDir),
1218 >                                                                                          cumulativeFlags.at("muon-tau pairs").at(currentDir),scaleFactor);
1219 >            else if(currentHistogram.inputCollection == "tau-tau pairs") fill2DHistogram(histo,currentHistogram,taus.product(),taus.product(),
1220 >                                                                                         cumulativeFlags.at("taus").at(currentDir),cumulativeFlags.at("taus").at(currentDir),
1221 >                                                                                         cumulativeFlags.at("tau-tau pairs").at(currentDir),scaleFactor);
1222 >            else if(currentHistogram.inputCollection == "tau-track pairs") fill2DHistogram(histo,currentHistogram,taus.product(),tracks.product(),
1223 >                                                                                           cumulativeFlags.at("taus").at(currentDir),cumulativeFlags.at("tracks").at(currentDir),
1224 >                                                                                           cumulativeFlags.at("tau-track pairs").at(currentDir),scaleFactor);
1225 >            else if(currentHistogram.inputCollection == "electron-trigobj pairs") fill2DHistogram(histo,currentHistogram,electrons.product(),trigobjs.product(),
1226 >                                                                                                  cumulativeFlags.at("electrons").at(currentDir),cumulativeFlags.at("trigobjs").at(currentDir),
1227 >                                                                                                  cumulativeFlags.at("electron-trigobj pairs").at(currentDir),scaleFactor);
1228 >            else if(currentHistogram.inputCollection == "muon-trigobj pairs") fill2DHistogram(histo,currentHistogram,muons.product(),trigobjs.product(),
1229 >                                                                                              cumulativeFlags.at("muons").at(currentDir),cumulativeFlags.at("trigobjs").at(currentDir),
1230 >                                                                                              cumulativeFlags.at("muon-trigobj pairs").at(currentDir),scaleFactor);
1231 >            else if(currentHistogram.inputCollection == "events") fill2DHistogram(histo,currentHistogram,events.product(),cumulativeFlags.at("events").at(currentDir),scaleFactor);
1232 >            else if(currentHistogram.inputCollection == "taus") fill2DHistogram(histo,currentHistogram,taus.product(),cumulativeFlags.at("taus").at(currentDir),scaleFactor);
1233 >            else if(currentHistogram.inputCollection == "mets") fill2DHistogram(histo,currentHistogram,mets.product(),cumulativeFlags.at("mets").at(currentDir),scaleFactor);
1234 >            else if(currentHistogram.inputCollection == "tracks") fill2DHistogram(histo,currentHistogram,tracks.product(),cumulativeFlags.at("tracks").at(currentDir),scaleFactor);
1235 >            else if(currentHistogram.inputCollection == "track-event pairs") fill2DHistogram(histo,currentHistogram,tracks.product(),events.product(),
1236 >                                                                                             cumulativeFlags.at("tracks").at(currentDir),cumulativeFlags.at("events").at(currentDir),
1237 >                                                                                             cumulativeFlags.at("track-event pairs").at(currentDir),scaleFactor);
1238 >            else if(currentHistogram.inputCollection == "genjets") fill2DHistogram(histo,currentHistogram,genjets.product(),cumulativeFlags.at("genjets").at(currentDir),scaleFactor);
1239 >            else if(currentHistogram.inputCollection == "mcparticles") fill2DHistogram(histo,currentHistogram,mcparticles.product(),cumulativeFlags.at("mcparticles").at(currentDir),scaleFactor);
1240 >            else if(currentHistogram.inputCollection == "primaryvertexs") fill2DHistogram(histo,currentHistogram,primaryvertexs.product(),cumulativeFlags.at("primaryvertexs").at(currentDir),scaleFactor);
1241 >            else if(currentHistogram.inputCollection == "bxlumis") fill2DHistogram(histo,currentHistogram,bxlumis.product(),cumulativeFlags.at("bxlumis").at(currentDir),scaleFactor);
1242 >            else if(currentHistogram.inputCollection == "photons") fill2DHistogram(histo,currentHistogram,photons.product(),cumulativeFlags.at("photons").at(currentDir),scaleFactor);
1243 >            else if(currentHistogram.inputCollection == "superclusters") fill2DHistogram(histo,currentHistogram,superclusters.product(),cumulativeFlags.at("superclusters").at(currentDir),scaleFactor);
1244 >            else if(currentHistogram.inputCollection == "trigobjs") fill2DHistogram(histo,currentHistogram,trigobjs.product(),cumulativeFlags.at("trigobjs").at(currentDir),scaleFactor);
1245 >            else if(currentHistogram.inputCollection == "stops" && datasetType_ == "signalMC") fill2DHistogram(histo,currentHistogram,stops.product(),cumulativeFlags.at("stops").at(currentDir),scaleFactor);
1246 >          }
1247  
1248 <      vertexPosition.SetXYZ (primaryvertexs->at(vertexIndex).x,primaryvertexs->at(vertexIndex).y,primaryvertexs->at(vertexIndex).z);
338 <      break;
339 <    }
1248 >        }
1249  
341    vector<bool> mcparticleFlags = cumulativeFlags["mcparticles"].back();
1250  
1251 <    for (uint mcparticleIndex = 0; mcparticleIndex != mcparticleFlags.size(); mcparticleIndex++){
1252 <      if(!mcparticleFlags.at(mcparticleIndex)) continue;
1251 >        //fills histograms with the sizes of collections
1252 >        for (uint currentObjectIndex = 0; currentObjectIndex != objectsToPlot.size(); currentObjectIndex++){
1253  
1254 <      double vx = mcparticles->at(mcparticleIndex).vx - vertexPosition.X (),
1255 <             vy = mcparticles->at(mcparticleIndex).vy - vertexPosition.Y (),
348 <             vz = mcparticles->at(mcparticleIndex).vz - vertexPosition.Z (),
349 <             px = mcparticles->at(mcparticleIndex).px,
350 <             py = mcparticles->at(mcparticleIndex).py,
351 <             pt = mcparticles->at(mcparticleIndex).pt,
352 <             d0;
353 <
354 <      d0 = (-vx * py + vy * px) / pt;
355 <      oneDHists_.at(currentChannelIndex)["genD0"]->Fill (d0);
356 <      oneDHists_.at(currentChannelIndex)["genAbsD0"]->Fill (fabs (d0));
357 <      oneDHists_.at(currentChannelIndex)["genDZ"]->Fill (vz);
358 <      oneDHists_.at(currentChannelIndex)["genAbsDZ"]->Fill (fabs (vz));
359 <    }
1254 >          string currentObject = objectsToPlot.at(currentObjectIndex);
1255 >          string objectToPlot = "";
1256  
1257 <    vector<bool> electronFlags = cumulativeFlags["electrons"].back();
1258 <    int electronCounter = 0;
1257 >          // Name of objectToPlot here must match the name specified in OSUAnalysis::OSUAnalysis().
1258 >          if(currentObject == "muon-muon pairs")                         objectToPlot = "dimuonPairs";
1259 >          else if(currentObject == "electron-electron pairs")            objectToPlot = "dielectronPairs";
1260 >          else if(currentObject == "electron-muon pairs")                objectToPlot = "electronMuonPairs";
1261 >          else if(currentObject == "electron-photon pairs")              objectToPlot = "electronPhotonPairs";
1262 >          else if(currentObject == "electron-jet pairs")                 objectToPlot = "electronJetPairs";
1263 >          else if(currentObject == "muon-jet pairs")                     objectToPlot = "muonJetPairs";
1264 >          else if(currentObject == "muon-event pairs")                     objectToPlot = "muonEventPairs";
1265 >          else if(currentObject == "muon-photon pairs")                     objectToPlot = "muonPhotonPairs";
1266 >          else if(currentObject == "photon-jet pairs")                     objectToPlot = "photonJetPairs";
1267 >          else if(currentObject == "met-jet pairs")                      objectToPlot = "metJetPairs";
1268 >          else if(currentObject == "track-jet pairs")                    objectToPlot = "trackJetPairs";
1269 >          else if(currentObject == "jet-jet pairs")                      objectToPlot = "dijetPairs";
1270 >          else if(currentObject == "jet-secondary jet pairs")            objectToPlot = "jetSecondaryJetPairs";
1271 >          else if(currentObject == "secondary jets")                     objectToPlot = "secondaryJets";
1272 >          else if(currentObject == "secondary photons")                     objectToPlot = "secondaryPhotons";
1273 >          else if(currentObject == "electron-track pairs")               objectToPlot = "electronTrackPairs";
1274 >          else if(currentObject == "muon-track pairs")                   objectToPlot = "muonTrackPairs";
1275 >          else if(currentObject == "muon-tau pairs")                     objectToPlot = "muonTauPairs";
1276 >          else if(currentObject == "tau-tau pairs")                      objectToPlot = "ditauPairs";
1277 >          else if(currentObject == "tau-track pairs")                    objectToPlot = "tauTrackPairs";
1278 >          else if(currentObject == "track-event pairs")                  objectToPlot = "trackEventPairs";
1279 >          else if(currentObject == "muon-secondary muon pairs")          objectToPlot = "muonSecondaryMuonPairs";
1280 >          else if(currentObject == "secondary muons")                    objectToPlot = "secondaryMuons";
1281 >          else if(currentObject == "muon-secondary jet pairs")           objectToPlot = "muonSecondaryJetPairs";
1282 >          else if(currentObject == "muon-secondary photon pairs")           objectToPlot = "muonSecondaryJetPairs";
1283 >          else if(currentObject == "electron-secondary jet pairs")       objectToPlot = "electronSecondaryJetPairs";
1284 >          else if(currentObject == "photon-secondary jet pairs")         objectToPlot = "photonSecondaryJetPairs";
1285 >          else if(currentObject == "electron-secondary electron pairs")  objectToPlot = "electronSecondaryElectronPairs";
1286 >          else if(currentObject == "secondary electrons")                objectToPlot = "secondaryElectrons";
1287 >          else if(currentObject == "electron-trigobj pairs")             objectToPlot = "electronTrigobjPairs";
1288 >          else if(currentObject == "muon-trigobj pairs")                 objectToPlot = "muonTrigobjPairs";
1289 >          else objectToPlot = currentObject;
1290 >
1291 >          string tempCurrentObject = objectToPlot;
1292 >          tempCurrentObject.at(0) = toupper(tempCurrentObject.at(0));
1293 >          string histoName = "num" + tempCurrentObject;
1294 >
1295 >
1296 >          if(find(objectsToCut.begin(), objectsToCut.end(), currentObject) != objectsToCut.end()) {
1297 >            flagPair lastCutFlags = cumulativeFlags.at(currentObject).at(currentDir);
1298 >            int numToPlot = 0;
1299 >            for (uint currentFlag = 0; currentFlag != lastCutFlags.size(); currentFlag++){
1300 >              if(lastCutFlags.at(currentFlag).second) numToPlot++;
1301 >            }
1302 >
1303 >            if(objectToPlot == "primaryvertexs"){
1304 >              oneDHists_.at(currentChannelIndex).at(currentCut).at(histoName+"BeforePileupCorrection")->Fill(primaryvertexs->size());
1305 >              oneDHists_.at(currentChannelIndex).at(currentCut).at(histoName+"AfterPileupCorrection")->Fill(primaryvertexs->size(),scaleFactor);
1306 >            }
1307 >            else {
1308 >              oneDHists_.at(currentChannelIndex).at(currentCut).at(histoName)->Fill(numToPlot,scaleFactor);
1309 >            }
1310 >          }
1311 >        } // end for (uint currentObjectIndex = 0; currentObjectIndex != objectsToPlot.size(); currentObjectIndex++)
1312  
364    for (uint electronIndex = 0; electronIndex != electronFlags.size(); electronIndex++){
365      if(!electronFlags.at(electronIndex)) continue;
1313  
1314 +      } // end if(eventPassedPreviousCuts.at(currentDir))
1315 +    } // end loop over cuts
1316  
1317 <      electronCounter++;
1318 <      oneDHists_.at(currentChannelIndex)["electronPt"]->Fill (electrons->at(electronIndex).pt);
1319 <      oneDHists_.at(currentChannelIndex)["electronEta"]->Fill (electrons->at(electronIndex).eta);
1320 <      oneDHists_.at(currentChannelIndex)["electronD0"]->Fill (electrons->at(electronIndex).correctedD0Vertex);
1321 <      oneDHists_.at(currentChannelIndex)["electronDz"]->Fill (electrons->at(electronIndex).correctedDZ);
1322 <      oneDHists_.at(currentChannelIndex)["electronAbsD0"]->Fill (fabs(electrons->at(electronIndex).correctedD0Vertex));
1323 <      oneDHists_.at(currentChannelIndex)["electronDZ"]->Fill (electrons->at(electronIndex).correctedDZ);
1324 <      oneDHists_.at(currentChannelIndex)["electronAbsDZ"]->Fill (fabs(electrons->at(electronIndex).correctedDZ));
1325 <      oneDHists_.at(currentChannelIndex)["electronD0Sig"]->Fill (electrons->at(electronIndex).correctedD0Vertex / electrons->at(electronIndex).tkD0err);
1326 <      oneDHists_.at(currentChannelIndex)["electronAbsD0Sig"]->Fill (fabs(electrons->at(electronIndex).correctedD0Vertex) / electrons->at(electronIndex).tkD0err);
1327 <      oneDHists_.at(currentChannelIndex)["electronIso"]->Fill (electrons->at(electronIndex).puChargedHadronIso / electrons->at(electronIndex).pt);
1328 <      oneDHists_.at(currentChannelIndex)["electronFbrem"]->Fill (electrons->at(electronIndex).fbrem);
1329 <      oneDHists_.at(currentChannelIndex)["electronMVATrig"]->Fill (electrons->at(electronIndex).mvaTrigV0);
1330 <      oneDHists_.at(currentChannelIndex)["electronMVANonTrig"]->Fill (electrons->at(electronIndex).mvaNonTrigV0);
1317 >    if (!useEDMFormat_ && eventPassedAllCuts){
1318 >      // Assign BNTree variables
1319 >      for (uint iBranch = 0; iBranch != treeBranches_.size(); iBranch++) {
1320 >        BranchSpecs brSpecs = treeBranches_.at(iBranch);
1321 >        string coll = brSpecs.inputCollection;
1322 >        if (cumulativeFlags.count(coll) == 0) clog << "Error: no flags found for collection:  " << coll << ", will cause a seg fault" << endl;
1323 >
1324 >        if     (coll == "jets")                assignTreeBranch(brSpecs,jets.product(),          cumulativeFlags.at(coll).back());
1325 >        else if(coll == "secondary jets")      assignTreeBranch(brSpecs,jets.product(),          cumulativeFlags.at(coll).back());
1326 >        else if(coll == "secondary photons")      assignTreeBranch(brSpecs,photons.product(),          cumulativeFlags.at(coll).back());
1327 >        else if(coll == "muons")               assignTreeBranch(brSpecs,muons.product(),         cumulativeFlags.at(coll).back());
1328 >        else if(coll == "secondary muons")     assignTreeBranch(brSpecs,muons.product(),         cumulativeFlags.at(coll).back());
1329 >        else if(coll == "electrons")           assignTreeBranch(brSpecs,electrons.product(),     cumulativeFlags.at(coll).back());
1330 >        else if(coll == "secondary electrons") assignTreeBranch(brSpecs,electrons.product(),     cumulativeFlags.at(coll).back());
1331 >        else if(coll == "events")              assignTreeBranch(brSpecs,events.product(),        cumulativeFlags.at(coll).back());
1332 >        else if(coll == "taus")                assignTreeBranch(brSpecs,taus.product(),          cumulativeFlags.at(coll).back());
1333 >        else if(coll == "mets")                assignTreeBranch(brSpecs,mets.product(),          cumulativeFlags.at(coll).back());
1334 >        else if(coll == "tracks")              assignTreeBranch(brSpecs,tracks.product(),        cumulativeFlags.at(coll).back());
1335 >        else if(coll == "genjets")             assignTreeBranch(brSpecs,genjets.product(),       cumulativeFlags.at(coll).back());
1336 >        else if(coll == "mcparticles")         assignTreeBranch(brSpecs,mcparticles.product(),   cumulativeFlags.at(coll).back());
1337 >        else if(coll == "primaryvertexs")      assignTreeBranch(brSpecs,primaryvertexs.product(),cumulativeFlags.at(coll).back());
1338 >        else if(coll == "bxlumis")             assignTreeBranch(brSpecs,bxlumis.product(),       cumulativeFlags.at(coll).back());
1339 >        else if(coll == "photons")             assignTreeBranch(brSpecs,photons.product(),       cumulativeFlags.at(coll).back());
1340 >        else if(coll == "superclusters")       assignTreeBranch(brSpecs,superclusters.product(), cumulativeFlags.at(coll).back());
1341 >        else if(coll == "trigobjs")            assignTreeBranch(brSpecs,trigobjs.product(),      cumulativeFlags.at(coll).back());
1342 >        else if(coll == "stops"
1343 >                && datasetType_ == "signalMC") assignTreeBranch(brSpecs,stops.product(),         cumulativeFlags.at(coll).back());
1344 >      } // end loop over branches
1345  
1346 +      if (!BNTrees_.at(currentChannelIndex)) { clog << "ERROR:  Undefined BNTree.  Will likely seg fault." << endl; }
1347 +      BNTrees_.at(currentChannelIndex)->Fill();  // only fill if event has passed cuts
1348      }
384    oneDHists_.at(currentChannelIndex)["numElectrons"]->Fill (electronCounter);
1349  
1350 +    (*channelDecisions)[currentChannel.name] = eventPassedAllCuts;
1351  
1352 <    vector<bool> muonFlags = cumulativeFlags["muons"].back();
388 <    int muonCounter = 0;
1352 >  } // end loop over channel
1353  
1354 +  masterCutFlow_->fillCutFlow(masterScaleFactor);
1355  
1356 <    for (uint muonIndex = 0; muonIndex != muonFlags.size(); muonIndex++){
392 <      if(!muonFlags.at(muonIndex)) continue;
393 <      muonCounter++;
394 <
395 <      oneDHists_.at(currentChannelIndex)["muonPt"]->Fill (muons->at(muonIndex).pt);
396 <      oneDHists_.at(currentChannelIndex)["muonEta"]->Fill (muons->at(muonIndex).eta);
397 <      oneDHists_.at(currentChannelIndex)["muonD0"]->Fill (muons->at(muonIndex).correctedD0Vertex);
398 <      oneDHists_.at(currentChannelIndex)["muonDz"]->Fill (muons->at(muonIndex).correctedDZ);
399 <      oneDHists_.at(currentChannelIndex)["muonAbsD0"]->Fill (fabs(muons->at(muonIndex).correctedD0Vertex));
400 <      oneDHists_.at(currentChannelIndex)["muonDZ"]->Fill (muons->at(muonIndex).correctedDZ);
401 <      oneDHists_.at(currentChannelIndex)["muonAbsDZ"]->Fill (fabs(muons->at(muonIndex).correctedDZ));
402 <      oneDHists_.at(currentChannelIndex)["muonD0Sig"]->Fill (muons->at(muonIndex).correctedD0Vertex / muons->at(muonIndex).tkD0err);
403 <      oneDHists_.at(currentChannelIndex)["muonAbsD0Sig"]->Fill (fabs(muons->at(muonIndex).correctedD0Vertex) / muons->at(muonIndex).tkD0err);
404 <      oneDHists_.at(currentChannelIndex)["muonIso"]->Fill (muons->at(muonIndex).puChargedHadronIso / muons->at(muonIndex).pt);
405 <    }
406 <    oneDHists_.at(currentChannelIndex)["numMuons"]->Fill (muonCounter);
407 <
1356 >  event.put (channelDecisions, "channelDecisions");
1357  
1358 + } // end void OSUAnalysis::analyze (const edm::Event &event, const edm::EventSetup &setup)
1359  
1360  
1361  
1362 <  } //end loop over channel
1362 > bool
1363 > OSUAnalysis::evaluateComparison (double testValue, string comparison, double cutValue){
1364  
414  masterCutFlow_->fillCutFlow();
1365  
1366 +  if(comparison == ">")       return testValue >  cutValue;
1367 +  else if(comparison == ">=") return testValue >= cutValue;
1368 +  else if(comparison == "<")  return testValue <  cutValue;
1369 +  else if(comparison == "<=") return testValue <= cutValue;
1370 +  else if(comparison == "==") return testValue == cutValue;
1371 +  else if(comparison == "=") return testValue == cutValue;
1372 +  else if(comparison == "!=") return testValue != cutValue;
1373 +  else {clog << "WARNING: invalid comparison operator '" << comparison << "'\n"; return false;}
1374  
1375   }
1376  
419
1377   bool
1378 < OSUAnalysis::evaluateComparison (double testValue, string comparison, double cutValue){
1378 > OSUAnalysis::evaluateComparison (string testValue, string comparison, string cutValue){
1379  
1380  
1381    if(comparison == ">")       return testValue >  cutValue;
# Line 426 | Line 1383 | OSUAnalysis::evaluateComparison (double
1383    else if(comparison == "<")  return testValue <  cutValue;
1384    else if(comparison == "<=") return testValue <= cutValue;
1385    else if(comparison == "==") return testValue == cutValue;
1386 +  else if(comparison == "=") return testValue == cutValue;
1387    else if(comparison == "!=") return testValue != cutValue;
1388 <  else {std::cout << "WARNING: invalid comparison operator '" << comparison << "'\n"; return false;}
1388 >  else {clog << "WARNING: invalid comparison operator '" << comparison << "'\n"; return false;}
1389  
1390   }
1391  
1392   bool
1393 < OSUAnalysis::evaluateTriggers (vector<string> triggersToTest, const BNtriggerCollection* triggerCollection){
1393 > OSUAnalysis::evaluateTriggers (vector<string> triggersToTest, vector<string> triggersToVeto, const BNtriggerCollection* triggerCollection){
1394  
1395 +  //initialize to false until a chosen trigger is passed
1396    bool triggerDecision = false;
1397  
1398 <  for (BNtriggerCollection::const_iterator trigger = triggerCollection->begin (); trigger != triggerCollection->end (); trigger++)
1399 <    {
1400 <      if(trigger->pass != 1) continue;
1401 <      for(uint triggerName = 0; triggerName != triggersToTest.size(); triggerName++)
1402 <        {
1403 <          if(trigger->name.find(triggersToTest.at(triggerName))!=std::string::npos){
1404 <            triggerDecision = true;
1405 <          }
1406 <        }
1398 >  if (printAllTriggers_) clog << "Printing list of all available triggers (which this event may or may not pass):" << endl;
1399 >  //loop over all triggers defined in the event
1400 >  for (BNtriggerCollection::const_iterator trigger = triggerCollection->begin (); trigger != triggerCollection->end (); trigger++){
1401 >
1402 >    if (printAllTriggers_) clog << "   " << trigger->name << endl;
1403 >
1404 >    //we're only interested in triggers that actually passed
1405 >    if(trigger->pass != 1) continue;
1406 >
1407 >    //if the event passes one of the veto triggers, exit and return false
1408 >    for(uint triggerName = 0; triggerName != triggersToVeto.size(); triggerName++){
1409 >      if(trigger->name.find(triggersToVeto.at(triggerName))!=string::npos) return false;
1410      }
1411 <  return triggerDecision;
1411 >    //if the event passes one of the chosen triggers, set triggerDecision to true
1412 >    for(uint triggerName = 0; triggerName != triggersToTest.size(); triggerName++){
1413 >      if(trigger->name.find(triggersToTest.at(triggerName))!=string::npos) triggerDecision = true;
1414 >    }
1415 >  }
1416  
1417 +  printAllTriggers_ = false;  // only print triggers once, not every event
1418 +
1419 +  //if none of the veto triggers fired:
1420 +  //return the OR of all the chosen triggers
1421 +  if (triggersToTest.size() != 0) return triggerDecision;
1422 +  //or if no triggers were defined return true
1423 +  else return true;
1424   }
1425  
1426 < std::vector<std::string>
1426 >
1427 > vector<string>
1428   OSUAnalysis::splitString (string inputString){
1429  
1430 <  std::stringstream stringStream(inputString);
1431 <  std::istream_iterator<std::string> begin(stringStream);
1432 <  std::istream_iterator<std::string> end;
1433 <  std::vector<std::string> stringVector(begin, end);
1430 >  stringstream stringStream(inputString);
1431 >  istream_iterator<string> begin(stringStream);
1432 >  istream_iterator<string> end;
1433 >  vector<string> stringVector(begin, end);
1434    return stringVector;
1435  
1436   }
1437  
1438 +
1439 + void OSUAnalysis::getTwoObjs(string tempInputCollection, string& obj1, string& obj2) {
1440 +  // Set two object strings from the tempInputCollection string,
1441 +  // For example, if tempInputCollection is "electron-muon pairs",
1442 +  // then obj1 = "electrons" and obj2 = "muons".
1443 +  // Note that the objects have an "s" appended.
1444 +
1445 +  int dashIndex = tempInputCollection.find("-");
1446 +  int spaceIndex = tempInputCollection.find_last_of(" ");
1447 +  int secondWordLength = spaceIndex - dashIndex;
1448 +  obj1 = tempInputCollection.substr(0,dashIndex) + "s";
1449 +  obj2 = tempInputCollection.substr(dashIndex+1,secondWordLength-1)+"s";
1450 +
1451 + }
1452 +
1453 +
1454 + string OSUAnalysis::getObjToGet(string obj) {
1455 +  // Return the string corresponding to the object to get for the given obj string.
1456 +  // Right now this only handles the case in which obj contains "secondary",
1457 +  // e.g, "secondary muons".
1458 +  // Note that "s" is NOT appended.
1459 +
1460 +  if (obj.find("secondary")==string::npos) return obj;  // "secondary" is not found
1461 +  int firstSpaceIndex = obj.find_first_of(" ");
1462 +  return obj.substr(firstSpaceIndex+1,obj.length()-1);
1463 +
1464 + }
1465 +
1466 +
1467 + //!jet valueLookup
1468   double
1469 < OSUAnalysis::valueLookup (const BNjet* object, string variable, string function){
1469 > OSUAnalysis::valueLookup (const BNjet* object, string variable, string function, string &stringValue){
1470  
1471    double value = 0.0;
1472    if(variable == "energy") value = object->energy;
# Line 581 | Line 1585 | OSUAnalysis::valueLookup (const BNjet* o
1585    else if(variable == "puJetId_loose_simple") value = object->puJetId_loose_simple;
1586    else if(variable == "puJetId_loose_cutbased") value = object->puJetId_loose_cutbased;
1587  
1588 +  //user defined variable
1589 +  else if(variable == "disappTrkLeadingJetID") {
1590 +    value = object->pt > 110
1591 +      && fabs(object->eta) < 2.4
1592 +      && object->chargedHadronEnergyFraction > 0.2
1593 +      && object->neutralHadronEnergyFraction < 0.7
1594 +      && object->chargedEmEnergyFraction < 0.5
1595 +      && object->neutralEmEnergyFraction < 0.7;
1596 +  }
1597 +
1598 +  else if(variable == "disappTrkSubLeadingJetID") {
1599 +    value = object->pt > 30
1600 +      && fabs(object->eta) < 4.5
1601 +      && object->neutralHadronEnergyFraction < 0.7
1602 +      && object->chargedEmEnergyFraction < 0.5;
1603 +  }
1604 +
1605 +  else if(variable == "dPhiMet") {
1606 +    if (const BNmet *met = chosenMET ()) {
1607 +      value = deltaPhi (object->phi, met->phi);
1608 +    } else value = -999;
1609 +  }
1610  
1611 <  else{std::cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
1611 >
1612 >  else{clog << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
1613  
1614    value = applyFunction(function, value);
1615  
1616    return value;
1617 < }
591 <
1617 > } // end jet valueLookup
1618  
1619  
1620 + //!muon valueLookup
1621   double
1622 < OSUAnalysis::valueLookup (const BNmuon* object, string variable, string function){
1622 > OSUAnalysis::valueLookup (const BNmuon* object, string variable, string function, string &stringValue){
1623  
1624    double value = 0.0;
1625    if(variable == "energy") value = object->energy;
# Line 608 | Line 1635 | OSUAnalysis::valueLookup (const BNmuon*
1635    else if(variable == "ecalIso") value = object->ecalIso;
1636    else if(variable == "hcalIso") value = object->hcalIso;
1637    else if(variable == "caloIso") value = object->caloIso;
1638 <  else if(variable == "trackIsoDR03") value = object->trackIsoDR03;
1638 >  else if(variable == "trackIsDR03") value = object->trackIsoDR03;
1639    else if(variable == "ecalIsoDR03") value = object->ecalIsoDR03;
1640    else if(variable == "hcalIsoDR03") value = object->hcalIsoDR03;
1641    else if(variable == "caloIsoDR03") value = object->caloIsoDR03;
# Line 684 | Line 1711 | OSUAnalysis::valueLookup (const BNmuon*
1711    else if(variable == "neutralHadronIsoDR04") value = object->neutralHadronIsoDR04;
1712    else if(variable == "photonIsoDR04") value = object->photonIsoDR04;
1713    else if(variable == "puChargedHadronIsoDR04") value = object->puChargedHadronIsoDR04;
1714 +  else if(variable == "chargedHadronIsoDR04") value = object->chargedHadronIsoDR04;
1715 +  else if(variable == "neutralHadronIsoDR04") value = object->neutralHadronIsoDR04;
1716 +  else if(variable == "photonIsoDR04") value = object->photonIsoDR04;
1717 +  else if(variable == "puChargedHadronIsoDR04") value = object->puChargedHadronIsoDR04;
1718    else if(variable == "rhoPrime") value = object->rhoPrime;
1719    else if(variable == "AEffDr03") value = object->AEffDr03;
1720    else if(variable == "AEffDr04") value = object->AEffDr04;
# Line 691 | Line 1722 | OSUAnalysis::valueLookup (const BNmuon*
1722    else if(variable == "pfIsoR03SumNeutralHadronEt") value = object->pfIsoR03SumNeutralHadronEt;
1723    else if(variable == "pfIsoR03SumPhotonEt") value = object->pfIsoR03SumPhotonEt;
1724    else if(variable == "pfIsoR03SumPUPt") value = object->pfIsoR03SumPUPt;
1725 +  else if(variable == "relpfIsoR04SumExceptChargedHad") value = (object->pfIsoR04SumNeutralHadronEt + object->pfIsoR04SumPhotonEt - 0.5*object->pfIsoR04SumPUPt)/ object->pt;
1726 +  else if(variable == "relpfIsoR04SumChargedHadronPt") value = object->pfIsoR04SumChargedHadronPt/object->pt;
1727 +  else if(variable == "relpfIsoR04SumNeutralHadronEt") value = object->pfIsoR04SumNeutralHadronEt/object->pt;
1728 +  else if(variable == "relpfIsoR04SumPhotonEt") value = object->pfIsoR04SumPhotonEt/object->pt;
1729 +  else if(variable == "relpfIsoR04SumPUPt") value = object->pfIsoR04SumPUPt/object->pt;
1730    else if(variable == "pfIsoR04SumChargedHadronPt") value = object->pfIsoR04SumChargedHadronPt;
1731    else if(variable == "pfIsoR04SumNeutralHadronEt") value = object->pfIsoR04SumNeutralHadronEt;
1732    else if(variable == "pfIsoR04SumPhotonEt") value = object->pfIsoR04SumPhotonEt;
# Line 746 | Line 1782 | OSUAnalysis::valueLookup (const BNmuon*
1782    else if(variable == "numberOfMatchedStations") value = object->numberOfMatchedStations;
1783    else if(variable == "time_ndof") value = object->time_ndof;
1784  
1785 <  else{std::cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
1785 >  //user-defined variables
1786 >  else if(variable == "looseID") {
1787 >    value = object->pt > 10 &&
1788 >      (object->isGlobalMuon  > 0 ||
1789 >       object->isTrackerMuon > 0);
1790 >  }
1791 >  else if(variable == "correctedD0VertexErr") value =  hypot (object->tkD0err, hypot (chosenVertex ()->xError, chosenVertex ()->yError));
1792 >  else if(variable == "correctedD0VertexSig") value =  object->correctedD0Vertex / hypot (object->tkD0err, hypot (chosenVertex ()->xError, chosenVertex ()->yError));
1793 >  else if(variable == "detIso") value = (object->trackIsoDR03) / object->pt;
1794 >  else if(variable == "relPFdBetaIso") value = (object->pfIsoR04SumChargedHadronPt + max(0.0, object->pfIsoR04SumNeutralHadronEt + object->pfIsoR04SumPhotonEt - 0.5*object->pfIsoR04SumPUPt)) / object->pt;
1795 >  else if(variable == "relPFdBetaIsoPseudo") value = (object->pfIsoR04SumChargedHadronPt + object->pfIsoR04SumNeutralHadronEt + object->pfIsoR04SumPhotonEt - 0.5*object->pfIsoR04SumPUPt) / object->pt;
1796 >  else if(variable == "relPFrhoIso") value = ( object->chargedHadronIso + max(0.0, object->neutralHadronIso + object->photonIso - object->AEffDr03*object->rhoPrime) ) / object->pt;
1797 >  else if(variable == "metMT") {
1798 >    if (const BNmet *met = chosenMET ())
1799 >      {
1800 >        double dPhi = deltaPhi (object->phi, met->phi);
1801 >        value = sqrt (2 * object->pt * met->pt * (1 - cos (dPhi)));
1802 >      }
1803 >    else
1804 >      value = -999;
1805 >  }
1806 >
1807 >
1808 >
1809 >  else if(variable == "correctedD0VertexInEBPlus"){
1810 >    if(fabs(object->eta) < 0.8 && object->eta > 0) value = object->correctedD0Vertex;
1811 >    else value = -999;
1812 >  }
1813 >  else if(variable == "correctedD0VertexOutEBPlus"){
1814 >    if(fabs(object->eta) < 1.479 && fabs(object->eta) > 0.8 && object->eta > 0) value = object->correctedD0Vertex;
1815 >    else value = -999;
1816 >  }
1817 >  else if(variable == "correctedD0VertexEEPlus"){
1818 >    if(fabs(object->eta) > 1.479 && object->eta > 0) value = object->correctedD0Vertex;
1819 >    else value = -999;
1820 >  }
1821 >
1822 >  else if(variable == "correctedD0BeamspotInEBPlus"){
1823 >    if(fabs(object->eta) < 0.8 && object->eta > 0) value = object->correctedD0;
1824 >    else value = -999;
1825 >  }
1826 >  else if(variable == "correctedD0BeamspotOutEBPlus"){
1827 >    if(fabs(object->eta) < 1.479 && fabs(object->eta) > 0.8 && object->eta > 0) value = object->correctedD0;
1828 >    else value = -999;
1829 >  }
1830 >  else if(variable == "correctedD0BeamspotEEPlus"){
1831 >    if(fabs(object->eta) > 1.479 && object->eta > 0) value = object->correctedD0;
1832 >    else value = -999;
1833 >  }
1834 >
1835 >  else if(variable == "correctedD0VertexInEBMinus"){
1836 >    if(fabs(object->eta) < 0.8 && object->eta < 0) value = object->correctedD0Vertex;
1837 >    else value = -999;
1838 >  }
1839 >  else if(variable == "correctedD0VertexOutEBMinus"){
1840 >    if(fabs(object->eta) < 1.479 && fabs(object->eta) > 0.8 && object->eta < 0) value = object->correctedD0Vertex;
1841 >    else value = -999;
1842 >  }
1843 >  else if(variable == "correctedD0VertexEEMinus"){
1844 >    if(fabs(object->eta) > 1.479 && object->eta < 0) value = object->correctedD0Vertex;
1845 >    else value = -999;
1846 >  }
1847 >
1848 >  else if(variable == "correctedD0BeamspotInEBMinus"){
1849 >    if(fabs(object->eta) < 0.8 && object->eta < 0) value = object->correctedD0;
1850 >    else value = -999;
1851 >  }
1852 >  else if(variable == "correctedD0BeamspotOutEBMinus"){
1853 >    if(fabs(object->eta) < 1.479 && fabs(object->eta) > 0.8 && object->eta < 0) value = object->correctedD0;
1854 >    else value = -999;
1855 >  }
1856 >  else if(variable == "correctedD0BeamspotEEMinus"){
1857 >    if(fabs(object->eta) > 1.479 && object->eta < 0) value = object->correctedD0;
1858 >    else value = -999;
1859 >  }
1860 >
1861 >
1862 >  else if(variable == "correctedD0VertexInEBPositiveCharge"){
1863 >    if(fabs(object->eta) < 0.8 && object->charge > 0) value = object->correctedD0Vertex;
1864 >    else value = -999;
1865 >  }
1866 >  else if(variable == "correctedD0VertexOutEBPositiveCharge"){
1867 >    if(fabs(object->eta) < 1.479 && fabs(object->eta) > 0.8 && object->charge > 0) value = object->correctedD0Vertex;
1868 >    else value = -999;
1869 >  }
1870 >  else if(variable == "correctedD0VertexEEPositiveCharge"){
1871 >    if(fabs(object->eta) > 1.479 && object->charge > 0) value = object->correctedD0Vertex;
1872 >    else value = -999;
1873 >  }
1874 >
1875 >  else if(variable == "correctedD0BeamspotInEBPositiveCharge"){
1876 >    if(fabs(object->eta) < 0.8 && object->charge > 0) value = object->correctedD0;
1877 >    else value = -999;
1878 >  }
1879 >  else if(variable == "correctedD0BeamspotOutEBPositiveCharge"){
1880 >    if(fabs(object->eta) < 1.479 && fabs(object->eta) > 0.8 && object->charge > 0) value = object->correctedD0;
1881 >    else value = -999;
1882 >  }
1883 >  else if(variable == "correctedD0BeamspotEEPositiveCharge"){
1884 >    if(fabs(object->eta) > 1.479 && object->charge > 0) value = object->correctedD0;
1885 >    else value = -999;
1886 >  }
1887 >
1888 >  else if(variable == "correctedD0VertexInEBNegativeCharge"){
1889 >    if(fabs(object->eta) < 0.8 && object->charge < 0) value = object->correctedD0Vertex;
1890 >    else value = -999;
1891 >  }
1892 >  else if(variable == "correctedD0VertexOutEBNegativeCharge"){
1893 >    if(fabs(object->eta) < 1.479 && fabs(object->eta) > 0.8 && object->charge < 0) value = object->correctedD0Vertex;
1894 >    else value = -999;
1895 >  }
1896 >  else if(variable == "correctedD0VertexEENegativeCharge"){
1897 >    if(fabs(object->eta) > 1.479 && object->charge < 0) value = object->correctedD0Vertex;
1898 >    else value = -999;
1899 >  }
1900 >
1901 >  else if(variable == "correctedD0BeamspotInEBNegativeCharge"){
1902 >    if(fabs(object->eta) < 0.8 && object->charge < 0) value = object->correctedD0;
1903 >    else value = -999;
1904 >  }
1905 >  else if(variable == "correctedD0BeamspotOutEBNegativeCharge"){
1906 >    if(fabs(object->eta) < 1.479 && fabs(object->eta) > 0.8 && object->charge < 0) value = object->correctedD0;
1907 >    else value = -999;
1908 >  }
1909 >  else if(variable == "correctedD0BeamspotEENegativeCharge"){
1910 >    if(fabs(object->eta) > 1.479 && object->charge < 0) value = object->correctedD0;
1911 >    else value = -999;
1912 >  }
1913 >
1914 >
1915 >  else if(variable == "tightID") {
1916 >    value = object->isGlobalMuon > 0                \
1917 >      && object->isPFMuon > 0                        \
1918 >      && object->normalizedChi2 < 10                \
1919 >      && object->numberOfValidMuonHits > 0        \
1920 >      && object->numberOfMatchedStations > 1        \
1921 >      && fabs(object->correctedD0Vertex) < 0.2        \
1922 >      && fabs(object->correctedDZ) < 0.5        \
1923 >      && object->numberOfValidPixelHits > 0                \
1924 >      && object->numberOfLayersWithMeasurement > 5;
1925 >  }
1926 >  else if(variable == "tightIDdisplaced"){
1927 >    value = object->isGlobalMuon > 0                \
1928 >      && object->isPFMuon > 0                        \
1929 >      && object->normalizedChi2 < 10                \
1930 >      && object->numberOfValidMuonHits > 0        \
1931 >      && object->numberOfMatchedStations > 1        \
1932 >      && object->numberOfValidPixelHits > 0        \
1933 >      && object->numberOfLayersWithMeasurement > 5;
1934 >  }
1935 >
1936 >  else if(variable == "genDeltaRLowest") value = getGenDeltaRLowest(object);
1937 >
1938 >  else if(variable == "genMatchedPdgId"){
1939 >    int index = getGenMatchedParticleIndex(object);
1940 >    if(index == -1) value = 0;
1941 >    else value = mcparticles->at(index).id;
1942 >  }
1943 >
1944 >  else if(variable == "genMatchedId"){
1945 >    int index = getGenMatchedParticleIndex(object);
1946 >    if(index == -1) value = 0;
1947 >    else value = getPdgIdBinValue(mcparticles->at(index).id);
1948 >  }
1949 >  else if(variable == "genMatchedMotherId"){
1950 >    int index = getGenMatchedParticleIndex(object);
1951 >    if(index == -1) value = 0;
1952 >    else value = getPdgIdBinValue(mcparticles->at(index).motherId);
1953 >  }
1954 >  else if(variable == "genMatchedMotherIdReverse"){
1955 >    int index = getGenMatchedParticleIndex(object);
1956 >    if(index == -1) value = 24;
1957 >    else value = 24 - getPdgIdBinValue(mcparticles->at(index).motherId);
1958 >  }
1959 >  else if(variable == "genMatchedGrandmotherId"){
1960 >    int index = getGenMatchedParticleIndex(object);
1961 >    if(index == -1) value = 0;
1962 >    else if(fabs(mcparticles->at(index).motherId) == 15){
1963 >      int motherIndex = findTauMotherIndex(&mcparticles->at(index));
1964 >      if(motherIndex == -1) value = 0;
1965 >      else value = getPdgIdBinValue(mcparticles->at(motherIndex).motherId);
1966 >    }
1967 >    else value = getPdgIdBinValue(mcparticles->at(index).grandMotherId);
1968 >  }
1969 >  else if(variable == "genMatchedGrandmotherIdReverse"){
1970 >    int index = getGenMatchedParticleIndex(object);
1971 >    if(index == -1) value = 24;
1972 >    else if(fabs(mcparticles->at(index).motherId) == 15){
1973 >      int motherIndex = findTauMotherIndex(&mcparticles->at(index));
1974 >      if(motherIndex == -1) value = 24;
1975 >      else value = 24 - getPdgIdBinValue(mcparticles->at(motherIndex).motherId);
1976 >    }
1977 >    else value = 24 - getPdgIdBinValue(mcparticles->at(index).grandMotherId);
1978 >  }
1979 >  else if(variable == "pfMuonsFromVertex"){
1980 >    double d0Error, dzError;
1981 >
1982 >    d0Error = hypot (object->tkD0err, hypot (chosenVertex ()->xError, chosenVertex ()->yError));
1983 >    dzError = hypot (object->tkDZerr, chosenVertex ()->zError);
1984 >    value = fabs (object->correctedD0Vertex) > 0.2 || fabs (object->correctedDZ) > 0.5
1985 >      || fabs (object->correctedD0Vertex / d0Error) > 99.0
1986 >      || fabs (object->correctedDZ / dzError) > 99.0;
1987 >    value = (object->isStandAloneMuon && !object->isTrackerMuon && !object->isGlobalMuon) || !value;
1988 >  }
1989 >
1990 >
1991 >
1992 >  else{clog << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
1993  
1994    value = applyFunction(function, value);
1995  
1996    return value;
1997 < }
1997 > } // end muon valueLookup
1998  
1999  
2000 + //!electron valueLookup
2001   double
2002 < OSUAnalysis::valueLookup (const BNelectron* object, string variable, string function){
2002 > OSUAnalysis::valueLookup (const BNelectron* object, string variable, string function, string &stringValue){
2003  
2004    double value = 0.0;
2005    if(variable == "energy") value = object->energy;
# Line 915 | Line 2159 | OSUAnalysis::valueLookup (const BNelectr
2159    else if(variable == "eidHyperTight4MC") value = object->eidHyperTight4MC;
2160    else if(variable == "passConvVeto") value = object->passConvVeto;
2161  
2162 +  //user-defined variables
2163 +  else if(variable == "correctedD0VertexErr") value =  hypot (object->tkD0err, hypot (chosenVertex ()->xError, chosenVertex ()->yError));
2164 +  else if(variable == "correctedD0VertexSig") value =  object->correctedD0Vertex / hypot (object->tkD0err, hypot (chosenVertex ()->xError, chosenVertex ()->yError));
2165 +  else if(variable == "detIso") value = (object->trackIso) / object->pt;
2166 +  else if(variable == "relPFrhoIso") value = ( object->chargedHadronIsoDR03 + max(0.0, object->neutralHadronIsoDR03 + object->photonIsoDR03 - object->AEffDr03*object->rhoPrime) ) / object->pt;
2167 +  else if(variable == "relPFrhoIsoEB") value = object->isEB ? ( object->chargedHadronIsoDR03 + max(0.0, object->neutralHadronIsoDR03 + object->photonIsoDR03 - object->AEffDr03*object->rhoPrime) ) / object->pt : -999;
2168 +  else if(variable == "relPFrhoIsoEE") value = object->isEE ? ( object->chargedHadronIsoDR03 + max(0.0, object->neutralHadronIsoDR03 + object->photonIsoDR03 - object->AEffDr03*object->rhoPrime) ) / object->pt : -999;
2169 +  else if(variable == "metMT") {
2170 +    if (const BNmet *met = chosenMET ())
2171 +      {
2172 +        double dPhi = deltaPhi (object->phi, met->phi);
2173 +        value = sqrt (2 * object->pt * met->pt * (1 - cos (dPhi)));
2174 +      }
2175 +    else
2176 +      value = -999;
2177 +  }
2178 +
2179 +  else if(variable == "correctedD0VertexEEPositiveChargeLowPt"){
2180 +    if(fabs(object->eta) > 1.479 && object->charge > 0 && object->pt > 45) value = object->correctedD0Vertex;
2181 +    else value = -999;
2182 +  }
2183 +  else if(variable == "correctedD0VertexEEPositiveChargeHighPt"){
2184 +    if(fabs(object->eta) > 1.479 && object->charge > 0 && object->pt < 45) value = object->correctedD0Vertex;
2185 +    else value = -999;
2186 +  }
2187 +
2188 +  else if(variable == "correctedD0VertexInEBPlus"){
2189 +    if(fabs(object->eta) < 0.8 && object->eta > 0) value = object->correctedD0Vertex;
2190 +    else value = -999;
2191 +  }
2192 +  else if(variable == "correctedD0VertexOutEBPlus"){
2193 +    if(object->isEB && fabs(object->eta) > 0.8 && object->eta > 0) value = object->correctedD0Vertex;
2194 +    else value = -999;
2195 +  }
2196 +  else if(variable == "correctedD0VertexEEPlus"){
2197 +    if(object->isEE && object->eta > 0) value = object->correctedD0Vertex;
2198 +    else value = -999;
2199 +  }
2200 +
2201 +  else if(variable == "correctedD0BeamspotInEBPlus"){
2202 +    if(fabs(object->eta) < 0.8 && object->eta > 0) value = object->correctedD0;
2203 +    else value = -999;
2204 +  }
2205 +  else if(variable == "correctedD0BeamspotOutEBPlus"){
2206 +    if(object->isEB && fabs(object->eta) > 0.8 && object->eta > 0) value = object->correctedD0;
2207 +    else value = -999;
2208 +  }
2209 +  else if(variable == "correctedD0BeamspotEEPlus"){
2210 +    if(object->isEE && object->eta > 0) value = object->correctedD0;
2211 +    else value = -999;
2212 +  }
2213 +
2214 +  else if(variable == "correctedD0VertexInEBMinus"){
2215 +    if(fabs(object->eta) < 0.8 && object->eta < 0) value = object->correctedD0Vertex;
2216 +    else value = -999;
2217 +  }
2218 +  else if(variable == "correctedD0VertexOutEBMinus"){
2219 +    if(object->isEB && fabs(object->eta) > 0.8 && object->eta < 0) value = object->correctedD0Vertex;
2220 +    else value = -999;
2221 +  }
2222 +  else if(variable == "correctedD0VertexEEMinus"){
2223 +    if(object->isEE && object->eta < 0) value = object->correctedD0Vertex;
2224 +    else value = -999;
2225 +  }
2226 +
2227 +  else if(variable == "correctedD0BeamspotInEBMinus"){
2228 +    if(fabs(object->eta) < 0.8 && object->eta < 0) value = object->correctedD0;
2229 +    else value = -999;
2230 +  }
2231 +  else if(variable == "correctedD0BeamspotOutEBMinus"){
2232 +    if(object->isEB && fabs(object->eta) > 0.8 && object->eta < 0) value = object->correctedD0;
2233 +    else value = -999;
2234 +  }
2235 +  else if(variable == "correctedD0BeamspotEEMinus"){
2236 +    if(object->isEE && object->eta < 0) value = object->correctedD0;
2237 +    else value = -999;
2238 +  }
2239 +
2240 +  else if(variable == "looseID"){
2241 +    if (object->isEB)
2242 +      {
2243 +        value = fabs(object->delEtaIn) < 0.007 \
2244 +          && fabs (object->delPhiIn) < 0.15 \
2245 +          && object->scSigmaIEtaIEta < 0.01 \
2246 +          && object->hadOverEm < 0.12 \
2247 +          && fabs (object->correctedD0Vertex) < 0.02 \
2248 +          && fabs (object->correctedDZ) < 0.2 \
2249 +          && object->absInvEMinusInvPin < 0.05 \
2250 +          && object->passConvVeto;
2251 +      }
2252 +    else
2253 +      {
2254 +        value = fabs(object->delEtaIn) < 0.009 \
2255 +          && fabs (object->delPhiIn) < 0.10 \
2256 +          && object->scSigmaIEtaIEta < 0.03 \
2257 +          && object->hadOverEm < 0.10 \
2258 +          && fabs (object->correctedD0Vertex) < 0.02 \
2259 +          && fabs (object->correctedDZ) < 0.2 \
2260 +          && object->absInvEMinusInvPin < 0.05 \
2261 +          && object->passConvVeto;
2262 +      }
2263 +  }
2264 +
2265 +  else if(variable == "tightID"){
2266 +    if (object->isEB)
2267 +      {
2268 +        value = fabs(object->delEtaIn) < 0.004 \
2269 +          && fabs (object->delPhiIn) < 0.03 \
2270 +          && object->scSigmaIEtaIEta < 0.01 \
2271 +          && object->hadOverEm < 0.12 \
2272 +          && fabs (object->correctedD0Vertex) < 0.02 \
2273 +          && fabs (object->correctedDZ) < 0.1 \
2274 +          && object->absInvEMinusInvPin < 0.05 \
2275 +          && object->passConvVeto;
2276 +      }
2277 +    else
2278 +      {
2279 +        value = fabs(object->delEtaIn) < 0.005 \
2280 +          && fabs (object->delPhiIn) < 0.02 \
2281 +          && object->scSigmaIEtaIEta < 0.03 \
2282 +          && object->hadOverEm < 0.10 \
2283 +          && fabs (object->correctedD0Vertex) < 0.02 \
2284 +          && fabs (object->correctedDZ) < 0.1 \
2285 +          && object->absInvEMinusInvPin < 0.05 \
2286 +          && object->passConvVeto;
2287 +      }
2288 +  }
2289 +
2290 +  else if(variable == "looseID"){
2291 +    value = object->pt > 10
2292 +      && object->mvaNonTrigV0 > 0;
2293 +      }
2294 +  else if(variable == "correctedD0VertexInEBPositiveCharge"){
2295 +    if(fabs(object->eta) < 0.8 && object->charge > 0) value = object->correctedD0Vertex;
2296 +    else value = -999;
2297 +  }
2298 +  else if(variable == "correctedD0VertexOutEBPositiveCharge"){
2299 +    if(object->isEB && fabs(object->eta) > 0.8 && object->charge > 0) value = object->correctedD0Vertex;
2300 +    else value = -999;
2301 +  }
2302 +  else if(variable == "correctedD0VertexEEPositiveCharge"){
2303 +    if(object->isEE && object->charge > 0) value = object->correctedD0Vertex;
2304 +    else value = -999;
2305 +  }
2306 +
2307 +  else if(variable == "correctedD0BeamspotInEBPositiveCharge"){
2308 +    if(fabs(object->eta) < 0.8 && object->charge > 0) value = object->correctedD0;
2309 +    else value = -999;
2310 +  }
2311 +  else if(variable == "correctedD0BeamspotOutEBPositiveCharge"){
2312 +    if(object->isEB && fabs(object->eta) > 0.8 && object->charge > 0) value = object->correctedD0;
2313 +    else value = -999;
2314 +  }
2315 +  else if(variable == "correctedD0BeamspotEEPositiveCharge"){
2316 +    if(object->isEE && object->charge > 0) value = object->correctedD0;
2317 +    else value = -999;
2318 +  }
2319 +
2320 +  else if(variable == "correctedD0VertexInEBNegativeCharge"){
2321 +    if(fabs(object->eta) < 0.8 && object->charge < 0) value = object->correctedD0Vertex;
2322 +    else value = -999;
2323 +  }
2324 +  else if(variable == "correctedD0VertexOutEBNegativeCharge"){
2325 +    if(object->isEB && fabs(object->eta) > 0.8 && object->charge < 0) value = object->correctedD0Vertex;
2326 +    else value = -999;
2327 +  }
2328 +  else if(variable == "correctedD0VertexEENegativeCharge"){
2329 +    if(object->isEE && object->charge < 0) value = object->correctedD0Vertex;
2330 +    else value = -999;
2331 +  }
2332 +
2333 +  else if(variable == "correctedD0BeamspotInEBNegativeCharge"){
2334 +    if(fabs(object->eta) < 0.8 && object->charge < 0) value = object->correctedD0;
2335 +    else value = -999;
2336 +  }
2337 +  else if(variable == "correctedD0BeamspotOutEBNegativeCharge"){
2338 +    if(object->isEB && fabs(object->eta) > 0.8 && object->charge < 0) value = object->correctedD0;
2339 +    else value = -999;
2340 +  }
2341 +  else if(variable == "correctedD0BeamspotEENegativeCharge"){
2342 +    if(object->isEE && object->charge < 0) value = object->correctedD0;
2343 +    else value = -999;
2344 +  }
2345 +
2346 +
2347 +  else if(variable == "tightIDdisplaced"){
2348 +    if (object->isEB)
2349 +      {
2350 +        value = fabs(object->delEtaIn) < 0.004 \
2351 +          && fabs (object->delPhiIn) < 0.03 \
2352 +          && object->scSigmaIEtaIEta < 0.01 \
2353 +          && object->hadOverEm < 0.12 \
2354 +          && object->absInvEMinusInvPin < 0.05;
2355 +      }
2356 +    else
2357 +      {
2358 +        value = fabs (object->delEtaIn) < 0.005 \
2359 +          && fabs (object->delPhiIn) < 0.02 \
2360 +          && object->scSigmaIEtaIEta < 0.03 \
2361 +          && object->hadOverEm < 0.10 \
2362 +          && object->absInvEMinusInvPin < 0.05;
2363 +      }
2364 +  }
2365 +
2366 +
2367 +  else if(variable == "genDeltaRLowest") value = getGenDeltaRLowest(object);
2368 +
2369 +  else if(variable == "genMatchedPdgId"){
2370 +    int index = getGenMatchedParticleIndex(object);
2371 +    if(index == -1) value = 0;
2372 +    else value = mcparticles->at(index).id;
2373 +  }
2374 +
2375 +
2376 +  else if(variable == "genMatchedId"){
2377 +    int index = getGenMatchedParticleIndex(object);
2378 +    if(index == -1) value = 0;
2379 +    else value = getPdgIdBinValue(mcparticles->at(index).id);
2380 +  }
2381 +  else if(variable == "genMatchedMotherId"){
2382 +    int index = getGenMatchedParticleIndex(object);
2383 +    if(index == -1) value = 0;
2384 +    else value = getPdgIdBinValue(mcparticles->at(index).motherId);
2385 +  }
2386 +  else if(variable == "genMatchedMotherIdReverse"){
2387 +    int index = getGenMatchedParticleIndex(object);
2388 +    if(index == -1) value = 24;
2389 +    else value = 24 -getPdgIdBinValue(mcparticles->at(index).motherId);
2390 +  }
2391 +  else if(variable == "genMatchedGrandmotherId"){
2392 +    int index = getGenMatchedParticleIndex(object);
2393 +    if(index == -1) value = 0;
2394 +    else if(fabs(mcparticles->at(index).motherId) == 15){
2395 +      int motherIndex = findTauMotherIndex(&mcparticles->at(index));
2396 +      if(motherIndex == -1) value = 0;
2397 +      else value = getPdgIdBinValue(mcparticles->at(motherIndex).motherId);
2398 +    }
2399 +    else value = getPdgIdBinValue(mcparticles->at(index).grandMotherId);
2400 +  }
2401 +  else if(variable == "genMatchedGrandmotherIdReverse"){
2402 +    int index = getGenMatchedParticleIndex(object);
2403 +    if(index == -1) value = 24;
2404 +    else if(fabs(mcparticles->at(index).motherId) == 15){
2405 +      int motherIndex = findTauMotherIndex(&mcparticles->at(index));
2406 +      if(motherIndex == -1) value = 24;
2407 +      else value = 24 - getPdgIdBinValue(mcparticles->at(motherIndex).motherId);
2408 +    }
2409 +    else value = 24 - getPdgIdBinValue(mcparticles->at(index).grandMotherId);
2410 +  }
2411 +  else if(variable == "pfElectronsFromVertex"){
2412 +    double d0Error, dzError;
2413 +
2414 +    d0Error = hypot (object->tkD0err, hypot (chosenVertex ()->xError, chosenVertex ()->yError));
2415 +    dzError = hypot (object->tkDZerr, chosenVertex ()->zError);
2416 +    value = fabs (object->correctedD0Vertex) > 0.2 || fabs (object->correctedDZ) > 0.5
2417 +      || fabs (object->correctedD0Vertex / d0Error) > 99.0
2418 +      || fabs (object->correctedDZ / dzError) > 99.0;
2419 +    value = !value;
2420 +  }
2421 +
2422 +
2423  
2424 <  else{std::cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
2424 >  else{clog << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
2425  
2426    value = applyFunction(function, value);
2427  
2428    return value;
2429 < }
2429 > } // end electron valueLookup
2430  
2431  
2432 + //!event valueLookup
2433   double
2434 < OSUAnalysis::valueLookup (const BNevent* object, string variable, string function){
2434 > OSUAnalysis::valueLookup (const BNevent* object, string variable, string function, string &stringValue){
2435  
2436    double value = 0.0;
2437  
# Line 933 | Line 2439 | OSUAnalysis::valueLookup (const BNevent*
2439    else if(variable == "pthat") value = object->pthat;
2440    else if(variable == "qScale") value = object->qScale;
2441    else if(variable == "alphaQCD") value = object->alphaQCD;
2442 +  else if(variable == "Ht") value = getHt(jets.product());
2443    else if(variable == "alphaQED") value = object->alphaQED;
2444    else if(variable == "scalePDF") value = object->scalePDF;
2445    else if(variable == "x1") value = object->x1;
# Line 993 | Line 2500 | OSUAnalysis::valueLookup (const BNevent*
2500    else if(variable == "id1") value = object->id1;
2501    else if(variable == "id2") value = object->id2;
2502    else if(variable == "evt") value = object->evt;
2503 <
2504 <  else{std::cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
2503 >  else if(variable == "puScaleFactor"){
2504 >    if(doPileupReweighting_ && datasetType_ != "data")
2505 >      value = puWeight_->at (events->at (0).numTruePV);
2506 >    else
2507 >      value = 1.0;
2508 >  }
2509 >  else if(variable == "muonScaleFactor") value = muonScaleFactor_;
2510 >  else if(variable == "electronScaleFactor") value = electronScaleFactor_;
2511 >  else if(variable == "stopCTauScaleFactor") value = stopCTauScaleFactor_;
2512 >  else if(variable == "bTagScaleFactor") value = bTagScaleFactor_;
2513 >  else if(variable == "ht") value = chosenHT ();
2514 >  else if(variable == "leadMuPairInvMass"){
2515 >    pair<const BNmuon *, const BNmuon *> muPair = leadMuonPair ();
2516 >    TLorentzVector p0 (muPair.first->px, muPair.first->py, muPair.first->pz, muPair.first->energy),
2517 >                   p1 (muPair.second->px, muPair.second->py, muPair.second->pz, muPair.second->energy);
2518 >    value = (p0 + p1).M ();
2519 >  }
2520 >  else if(variable == "leadMuPairPt"){
2521 >    pair<const BNmuon *, const BNmuon *> muPair = leadMuonPair ();
2522 >    TVector2 pt0 (muPair.first->px, muPair.first->py),
2523 >             pt1 (muPair.second->px, muPair.second->py);
2524 >    pt0 += pt1;
2525 >    value = pt0.Mod ();
2526 >  }
2527 >  else if(variable == "leadElPairInvMass"){
2528 >    pair<const BNelectron *, const BNelectron *> muPair = leadElectronPair ();
2529 >    TLorentzVector p0 (muPair.first->px, muPair.first->py, muPair.first->pz, muPair.first->energy),
2530 >                   p1 (muPair.second->px, muPair.second->py, muPair.second->pz, muPair.second->energy);
2531 >    value = (p0 + p1).M ();
2532 >  }
2533 >  else if(variable == "leadElPairPt"){
2534 >    pair<const BNelectron *, const BNelectron *> muPair = leadElectronPair ();
2535 >    TVector2 pt0 (muPair.first->px, muPair.first->py),
2536 >             pt1 (muPair.second->px, muPair.second->py);
2537 >    pt0 += pt1;
2538 >    value = pt0.Mod ();
2539 >  }
2540 >  else{clog << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
2541  
2542    value = applyFunction(function, value);
2543  
2544    return value;
2545 < }
2545 > } // end event valueLookup
2546  
2547 +
2548 + //!tau valueLookup
2549   double
2550 < OSUAnalysis::valueLookup (const BNtau* object, string variable, string function){
2550 > OSUAnalysis::valueLookup (const BNtau* object, string variable, string function, string &stringValue){
2551  
2552    double value = 0.0;
2553  
# Line 1046 | Line 2591 | OSUAnalysis::valueLookup (const BNtau* o
2591    else if(variable == "HPSdecayModeFinding") value = object->HPSdecayModeFinding;
2592    else if(variable == "leadingTrackValid") value = object->leadingTrackValid;
2593  
2594 +  else if (variable == "looseHadronicID") {
2595 +    value = object->pt > 10
2596 +      && object->eta < 2.3
2597 +      && object->HPSbyLooseCombinedIsolationDeltaBetaCorr > 0
2598 +      && object->HPSdecayModeFinding > 0
2599 +      && object->HPSagainstElectronLoose > 0
2600 +      && object->HPSagainstMuonTight > 0;
2601 +  }
2602 +
2603 +  else if(variable == "genDeltaRLowest") value = getGenDeltaRLowest(object);
2604  
2605 <  else{std::cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
2605 >  else if(variable == "genMatchedPdgId"){
2606 >    int index = getGenMatchedParticleIndex(object);
2607 >    if(index == -1) value = 0;
2608 >    else value = mcparticles->at(index).id;
2609 >  }
2610 >
2611 >  else if(variable == "genMatchedId"){
2612 >    int index = getGenMatchedParticleIndex(object);
2613 >    if(index == -1) value = 0;
2614 >    else value = getPdgIdBinValue(mcparticles->at(index).id);
2615 >  }
2616 >  else if(variable == "genMatchedMotherId"){
2617 >    int index = getGenMatchedParticleIndex(object);
2618 >    if(index == -1) value = 0;
2619 >    else value = getPdgIdBinValue(mcparticles->at(index).motherId);
2620 >  }
2621 >  else if(variable == "genMatchedMotherIdReverse"){
2622 >    int index = getGenMatchedParticleIndex(object);
2623 >    if(index == -1) value = 24;
2624 >    else value = 24 -getPdgIdBinValue(mcparticles->at(index).motherId);
2625 >  }
2626 >  else if(variable == "genMatchedGrandmotherId"){
2627 >    int index = getGenMatchedParticleIndex(object);
2628 >    if(index == -1) value = 0;
2629 >    else if(fabs(mcparticles->at(index).motherId) == 15){
2630 >      int motherIndex = findTauMotherIndex(&mcparticles->at(index));
2631 >      if(motherIndex == -1) value = 0;
2632 >      else value = getPdgIdBinValue(mcparticles->at(motherIndex).motherId);
2633 >    }
2634 >    else value = getPdgIdBinValue(mcparticles->at(index).grandMotherId);
2635 >  }
2636 >  else if(variable == "genMatchedGrandmotherIdReverse"){
2637 >    int index = getGenMatchedParticleIndex(object);
2638 >    if(index == -1) value = 24;
2639 >    else if(fabs(mcparticles->at(index).motherId) == 15){
2640 >      int motherIndex = findTauMotherIndex(&mcparticles->at(index));
2641 >      if(motherIndex == -1) value = 24;
2642 >      else value = 24 - getPdgIdBinValue(mcparticles->at(motherIndex).motherId);
2643 >    }
2644 >    else value = 24 - getPdgIdBinValue(mcparticles->at(index).grandMotherId);
2645 >  }
2646 >
2647 >
2648 >  else{clog << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
2649  
2650    value = applyFunction(function, value);
2651  
2652    return value;
2653 < }
2653 > } // end tau valueLookup
2654 >
2655  
2656 + //!met valueLookup
2657   double
2658 < OSUAnalysis::valueLookup (const BNmet* object, string variable, string function){
2658 > OSUAnalysis::valueLookup (const BNmet* object, string variable, string function, string &stringValue){
2659  
2660    double value = 0.0;
2661  
# Line 1119 | Line 2719 | OSUAnalysis::valueLookup (const BNmet* o
2719    else if(variable == "pfT1jet10pt") value = object->pfT1jet10pt;
2720    else if(variable == "pfT1jet10phi") value = object->pfT1jet10phi;
2721  
2722 <  else{std::cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
2722 >  else{clog << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
2723  
2724    value = applyFunction(function, value);
2725  
2726    return value;
2727 < }
2727 > } // end met valueLookup
2728 >
2729  
2730 + //!track valueLookup
2731   double
2732 < OSUAnalysis::valueLookup (const BNtrack* object, string variable, string function){
2732 > OSUAnalysis::valueLookup (const BNtrack* object, string variable, string function, string &stringValue){
2733  
2734    double value = 0.0;
2735 +  double pMag = sqrt(object->pt * object->pt +
2736 +                     object->pz * object->pz);
2737  
2738    if(variable == "pt") value = object->pt;
2739    else if(variable == "px") value = object->px;
# Line 1149 | Line 2753 | OSUAnalysis::valueLookup (const BNtrack*
2753    else if(variable == "numValidHits") value = object->numValidHits;
2754    else if(variable == "isHighPurity") value = object->isHighPurity;
2755  
2756 +  //additional BNs info for disappTrks
2757 +  else if(variable == "caloEMDeltaRp3")     value = object->caloEMDeltaRp3;
2758 +  else if(variable == "caloHadDeltaRp3")    value = object->caloHadDeltaRp3;
2759 +  else if(variable == "caloEMDeltaRp4")     value = object->caloEMDeltaRp4;
2760 +  else if(variable == "caloHadDeltaRp4")    value = object->caloHadDeltaRp4;
2761 +  else if(variable == "caloEMDeltaRp5")     value = object->caloEMDeltaRp5;
2762 +  else if(variable == "caloHadDeltaRp5")    value = object->caloHadDeltaRp5;
2763 +  else if(variable == "nHitsMissingOuter")  value = object->nHitsMissingOuter;
2764 +  else if(variable == "nHitsMissingInner")  value = object->nHitsMissingInner;
2765 +  else if(variable == "nHitsMissingMiddle") value = object->nHitsMissingMiddle;
2766 +  else if(variable == "depTrkRp3")          value = object->depTrkRp3;
2767 +  else if(variable == "trkRelIsoRp3")       value = (object->depTrkRp3 - object->pt) / object->pt;
2768 +  else if(variable == "trkRelIsoRp5")       value = (object->depTrkRp5 - object->pt) / object->pt;
2769 +  else if(variable == "depEcalRp3")         value = object->depEcalRp3;
2770 +  else if(variable == "depHcalRp3")         value = object->depHcalRp3;
2771 +  else if(variable == "depHoRp3")           value = object->depHoRp3;
2772 +  else if(variable == "nTracksRp3")         value = object->nTracksRp3;
2773 +  else if(variable == "trackerVetoPtRp3")   value = object->trackerVetoPtRp3;
2774 +  else if(variable == "emVetoEtRp3")        value = object->emVetoEtRp3;
2775 +  else if(variable == "hadVetoEtRp3")       value = object->hadVetoEtRp3;
2776 +  else if(variable == "hoVetoEtRp3")        value = object->hoVetoEtRp3;
2777 +  else if(variable == "depTrkRp5")          value = object->depTrkRp5;
2778 +  else if(variable == "depEcalRp5")         value = object->depEcalRp5;
2779 +  else if(variable == "depHcalRp5")         value = object->depHcalRp5;
2780 +  else if(variable == "depHoRp5")           value = object->depHoRp5;
2781 +  else if(variable == "nTracksRp5")         value = object->nTracksRp5;
2782 +  else if(variable == "trackerVetoPtRp5")   value = object->trackerVetoPtRp5;
2783 +  else if(variable == "emVetoEtRp5")        value = object->emVetoEtRp5;
2784 +  else if(variable == "hadVetoEtRp5")       value = object->hadVetoEtRp5;
2785 +  else if(variable == "hoVetoEtRp5")        value = object->hoVetoEtRp5;
2786 +
2787 +  //user defined variables
2788 +  else if(variable == "d0wrtBS") value = (object->vx-events->at(0).BSx)*object->py/object->pt - (object->vy-events->at(0).BSy)*object->px/object->pt;
2789 +  else if(variable == "dZwrtBS") value = object->dZ - events->at(0).BSz;
2790 +  else if(variable == "depTrkRp5MinusPt"){
2791 +    if ( (object->depTrkRp5 - object->pt) < 0 ) {
2792 +           value = 0;
2793 +         }
2794 +         else value =  (object->depTrkRp5 - object->pt);
2795 +  }
2796 +  else if(variable == "depTrkRp3MinusPt"){
2797 +    if ( (object->depTrkRp3 - object->pt) < 0 ) {
2798 +      value = 0;
2799 +    }
2800 +    else value =  (object->depTrkRp3 - object->pt);
2801 +  }
2802 +
2803 +  else if(variable == "dPhiMet") {
2804 +    if (const BNmet *met = chosenMET ()) {
2805 +      value = deltaPhi (object->phi, met->phi);
2806 +    } else value = -999;
2807 +  }
2808 +  
2809 +  
2810 +  else if(variable == "caloTotDeltaRp5")            value =  (object->caloHadDeltaRp5 + object->caloEMDeltaRp5);
2811 +  else if(variable == "caloTotDeltaRp5ByP")         value = ((object->caloHadDeltaRp5 + object->caloEMDeltaRp5)/pMag);
2812 +  else if(variable == "caloTotDeltaRp5RhoCorr")     value = getTrkCaloTotRhoCorr(object);
2813 +  else if(variable == "caloTotDeltaRp5ByPRhoCorr")  value = getTrkCaloTotRhoCorr(object) / pMag;
2814 +  else if(variable == "isIso")                      value = getTrkIsIso(object, tracks.product());
2815 +  else if(variable == "isMatchedDeadEcal")          value = getTrkIsMatchedDeadEcal(object);
2816 +  else if(variable == "ptErrorByPt")                value = (object->ptError/object->pt);
2817 +  else if(variable == "ptError")                    value = object->ptError;
2818 +  else if(variable == "ptRes")                      value = getTrkPtRes(object);
2819 +  else if (variable == "d0wrtPV"){
2820 +    double vx = object->vx - chosenVertex ()->x,
2821 +      vy = object->vy - chosenVertex ()->y,
2822 +      px = object->px,
2823 +      py = object->py,
2824 +      pt = object->pt;
2825 +    value = (-vx * py + vy * px) / pt;
2826 +  }
2827 +  else if (variable == "dZwrtPV"){
2828 +    double vx = object->vx - chosenVertex ()->x,
2829 +      vy = object->vy - chosenVertex ()->y,
2830 +      vz = object->vz - chosenVertex ()->z,
2831 +      px = object->px,
2832 +      py = object->py,
2833 +      pz = object->pz,
2834 +      pt = object->pt;
2835 +    value = vz - (vx * px + vy * py)/pt * (pz/pt);
2836 +  }
2837 +
2838 +
2839 +  else if(variable == "genDeltaRLowest") value = getGenDeltaRLowest(object);
2840 +
2841 +  else if(variable == "genMatchedPdgId"){
2842 +    int index = getGenMatchedParticleIndex(object);
2843 +    if(index == -1) value = 0;
2844 +    else value = mcparticles->at(index).id;
2845 +  }
2846 +
2847 +
2848 +  else if(variable == "genMatchedId"){
2849 +    int index = getGenMatchedParticleIndex(object);
2850 +    if(index == -1) value = 0;
2851 +    else value = getPdgIdBinValue(mcparticles->at(index).id);
2852 +  }
2853 +  else if(variable == "genMatchedMotherId"){
2854 +    int index = getGenMatchedParticleIndex(object);
2855 +    if(index == -1) value = 0;
2856 +    else value = getPdgIdBinValue(mcparticles->at(index).motherId);
2857 +  }
2858 +  else if(variable == "genMatchedMotherIdReverse"){
2859 +    int index = getGenMatchedParticleIndex(object);
2860 +    if(index == -1) value = 24;
2861 +    else value = 24 -getPdgIdBinValue(mcparticles->at(index).motherId);
2862 +  }
2863 +  else if(variable == "genMatchedGrandmotherId"){
2864 +    int index = getGenMatchedParticleIndex(object);
2865 +    if(index == -1) value = 0;
2866 +    else if(fabs(mcparticles->at(index).motherId) == 15){
2867 +      int motherIndex = findTauMotherIndex(&mcparticles->at(index));
2868 +      if(motherIndex == -1) value = 0;
2869 +      else value = getPdgIdBinValue(mcparticles->at(motherIndex).motherId);
2870 +    }
2871 +    else value = getPdgIdBinValue(mcparticles->at(index).grandMotherId);
2872 +  }
2873 +  else if(variable == "genMatchedGrandmotherIdReverse"){
2874 +    int index = getGenMatchedParticleIndex(object);
2875 +    if(index == -1) value = 24;
2876 +    else if(fabs(mcparticles->at(index).motherId) == 15){
2877 +      int motherIndex = findTauMotherIndex(&mcparticles->at(index));
2878 +      if(motherIndex == -1) value = 24;
2879 +      else value = 24 - getPdgIdBinValue(mcparticles->at(motherIndex).motherId);
2880 +    }
2881 +    else value = 24 - getPdgIdBinValue(mcparticles->at(index).grandMotherId);
2882 +  }
2883 +
2884  
2885 <  else{std::cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
2885 >
2886 >  else{clog << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
2887  
2888    value = applyFunction(function, value);
2889  
2890    return value;
2891 < }
2891 > } // end track valueLookup
2892  
2893 +
2894 + //!genjet valueLookup
2895   double
2896 < OSUAnalysis::valueLookup (const BNgenjet* object, string variable, string function){
2896 > OSUAnalysis::valueLookup (const BNgenjet* object, string variable, string function, string &stringValue){
2897  
2898    double value = 0.0;
2899  
# Line 1178 | Line 2913 | OSUAnalysis::valueLookup (const BNgenjet
2913    else if(variable == "charge") value = object->charge;
2914  
2915  
2916 <  else{std::cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
2916 >  else{clog << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
2917  
2918    value = applyFunction(function, value);
2919  
2920    return value;
2921   }
2922  
2923 + //!mcparticle valueLookup
2924   double
2925 < OSUAnalysis::valueLookup (const BNmcparticle* object, string variable, string function){
2925 > OSUAnalysis::valueLookup (const BNmcparticle* object, string variable, string function, string &stringValue){
2926  
2927    double value = 0.0;
2928  
# Line 1275 | Line 3011 | OSUAnalysis::valueLookup (const BNmcpart
3011    else if(variable == "grandMother11Status") value = object->grandMother11Status;
3012    else if(variable == "grandMother11Charge") value = object->grandMother11Charge;
3013  
3014 <  else{std::cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
3014 >  //user-defined variables
3015 >  else if (variable == "d0"){
3016 >    double vx = object->vx - chosenVertex ()->x,
3017 >      vy = object->vy - chosenVertex ()->y,
3018 >      px = object->px,
3019 >      py = object->py,
3020 >      pt = object->pt;
3021 >    value = (-vx * py + vy * px) / pt;
3022 >  }
3023 >  else if (variable == "dz"){
3024 >    double vx = object->vx - chosenVertex ()->x,
3025 >      vy = object->vy - chosenVertex ()->y,
3026 >      vz = object->vz - chosenVertex ()->z,
3027 >      px = object->px,
3028 >      py = object->py,
3029 >      pz = object->pz,
3030 >      pt = object->pt;
3031 >    value = vz - (vx * px + vy * py)/pt * (pz/pt);
3032 >  }
3033 >  else if(variable == "v0"){
3034 >    value = sqrt(object->vx*object->vx + object->vy*object->vy);
3035 >  }
3036 >  else if(variable == "deltaV0"){
3037 >    value = sqrt((object->vx-chosenVertex ()->x)*(object->vx-chosenVertex ()->x) + (object->vy-chosenVertex ()->y)*(object->vy-chosenVertex ()->y));
3038 >  }
3039 >  else if (variable == "deltaVx"){
3040 >    value = object->vx - chosenVertex ()->x;
3041 >  }
3042 >  else if (variable == "deltaVy"){
3043 >    value = object->vy - chosenVertex ()->y;
3044 >  }
3045 >  else if (variable == "deltaVz"){
3046 >    value = object->vz - chosenVertex ()->z;
3047 >  }
3048 >
3049 >
3050 >  else{clog << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
3051  
3052    value = applyFunction(function, value);
3053  
3054    return value;
3055 < }
3055 > } // end mcparticle valueLookup
3056 >
3057  
3058 + //!primaryvertex valueLookup
3059   double
3060 < OSUAnalysis::valueLookup (const BNprimaryvertex* object, string variable, string function){
3060 > OSUAnalysis::valueLookup (const BNprimaryvertex* object, string variable, string function, string &stringValue){
3061  
3062    double value = 0.0;
3063  
# Line 1302 | Line 3076 | OSUAnalysis::valueLookup (const BNprimar
3076    else if(variable == "isGood") value = object->isGood;
3077  
3078  
3079 <  else{std::cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
3079 >  else{clog << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
3080  
3081    value = applyFunction(function, value);
3082  
3083    return value;
3084   }
3085  
3086 + //!bxlumi valueLookup
3087   double
3088 < OSUAnalysis::valueLookup (const BNbxlumi* object, string variable, string function){
3088 > OSUAnalysis::valueLookup (const BNbxlumi* object, string variable, string function, string &stringValue){
3089  
3090    double value = 0.0;
3091  
# Line 1319 | Line 3094 | OSUAnalysis::valueLookup (const BNbxlumi
3094    else if(variable == "bx_LUMI_now") value = object->bx_LUMI_now;
3095  
3096  
3097 <  else{std::cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
3097 >  else{clog << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
3098  
3099    value = applyFunction(function, value);
3100  
3101    return value;
3102   }
3103  
3104 + //!photon valueLookup
3105   double
3106 < OSUAnalysis::valueLookup (const BNphoton* object, string variable, string function){
3106 > OSUAnalysis::valueLookup (const BNphoton* object, string variable, string function, string &stringValue){
3107  
3108    double value = 0.0;
3109  
# Line 1402 | Line 3178 | OSUAnalysis::valueLookup (const BNphoton
3178    else if(variable == "seedRecoFlag") value = object->seedRecoFlag;
3179  
3180  
3181 <  else{std::cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
3181 >
3182 >
3183 >  else if(variable == "genDeltaRLowest") value = getGenDeltaRLowest(object);
3184 >
3185 >  else if(variable == "genMatchedPdgId"){
3186 >    int index = getGenMatchedParticleIndex(object);
3187 >    if(index == -1) value = 0;
3188 >    else value = mcparticles->at(index).id;
3189 >  }
3190 >
3191 >
3192 >
3193 >  else if(variable == "genMatchedId"){
3194 >    int index = getGenMatchedParticleIndex(object);
3195 >    if(index == -1) value = 0;
3196 >    else value = getPdgIdBinValue(mcparticles->at(index).id);
3197 >  }
3198 >  else if(variable == "genMatchedMotherId"){
3199 >    int index = getGenMatchedParticleIndex(object);
3200 >    if(index == -1) value = 0;
3201 >    else value = getPdgIdBinValue(mcparticles->at(index).motherId);
3202 >  }
3203 >  else if(variable == "genMatchedMotherIdReverse"){
3204 >    int index = getGenMatchedParticleIndex(object);
3205 >    if(index == -1) value = 24;
3206 >    else value = 24 -getPdgIdBinValue(mcparticles->at(index).motherId);
3207 >  }
3208 >  else if(variable == "genMatchedGrandmotherId"){
3209 >    int index = getGenMatchedParticleIndex(object);
3210 >    if(index == -1) value = 0;
3211 >    else if(fabs(mcparticles->at(index).motherId) == 15){
3212 >      int motherIndex = findTauMotherIndex(&mcparticles->at(index));
3213 >      if(motherIndex == -1) value = 0;
3214 >      else value = getPdgIdBinValue(mcparticles->at(motherIndex).motherId);
3215 >    }
3216 >    else value = getPdgIdBinValue(mcparticles->at(index).grandMotherId);
3217 >  }
3218 >  else if(variable == "genMatchedGrandmotherIdReverse"){
3219 >    int index = getGenMatchedParticleIndex(object);
3220 >    if(index == -1) value = 24;
3221 >    else if(fabs(mcparticles->at(index).motherId) == 15){
3222 >      int motherIndex = findTauMotherIndex(&mcparticles->at(index));
3223 >      if(motherIndex == -1) value = 24;
3224 >      else value = 24 - getPdgIdBinValue(mcparticles->at(motherIndex).motherId);
3225 >    }
3226 >    else value = 24 - getPdgIdBinValue(mcparticles->at(index).grandMotherId);
3227 >  }
3228 >
3229 >
3230 >  else{clog << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
3231  
3232    value = applyFunction(function, value);
3233  
3234    return value;
3235 < }
3235 > } // end photon valueLookup
3236  
3237 +
3238 + //!supercluster valueLookup
3239   double
3240 < OSUAnalysis::valueLookup (const BNsupercluster* object, string variable, string function){
3240 > OSUAnalysis::valueLookup (const BNsupercluster* object, string variable, string function, string &stringValue){
3241  
3242    double value = 0.0;
3243  
# Line 1424 | Line 3251 | OSUAnalysis::valueLookup (const BNsuperc
3251    else if(variable == "theta") value = object->theta;
3252  
3253  
3254 <  else{std::cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
3254 >  else{clog << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
3255 >
3256 >  value = applyFunction(function, value);
3257 >
3258 >  return value;
3259 > }
3260 >
3261 > //!trigobj valueLookup
3262 > double
3263 > OSUAnalysis::valueLookup (const BNtrigobj* object, string variable, string function, string &stringValue){
3264 >
3265 >  double value = 0.0;
3266 >
3267 >  if(variable == "pt") value = object->pt;
3268 >  else if(variable == "eta") value = object->eta;
3269 >  else if(variable == "phi") value = object->phi;
3270 >  else if(variable == "px") value = object->px;
3271 >  else if(variable == "py") value = object->py;
3272 >  else if(variable == "pz") value = object->pz;
3273 >  else if(variable == "et") value = object->et;
3274 >  else if(variable == "energy") value = object->energy;
3275 >  else if(variable == "etTotal") value = object->etTotal;
3276 >  else if(variable == "id") value = object->id;
3277 >  else if(variable == "charge") value = object->charge;
3278 >  else if(variable == "isIsolated") value = object->isIsolated;
3279 >  else if(variable == "isMip") value = object->isMip;
3280 >  else if(variable == "isForward") value = object->isForward;
3281 >  else if(variable == "isRPC") value = object->isRPC;
3282 >  else if(variable == "bx") value = object->bx;
3283 >  else if(variable == "filter") {
3284 >    if ((stringValue = object->filter) == "")
3285 >      stringValue = "none";  // stringValue should only be empty if value is filled
3286 >  }
3287 >
3288 >  else{clog << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
3289 >
3290 >  value = applyFunction(function, value);
3291 >
3292 >  return value;
3293 > }
3294 >
3295 > //!muon-muon pair valueLookup
3296 > double
3297 > OSUAnalysis::valueLookup (const BNmuon* object1, const BNmuon* object2, string variable, string function, string &stringValue){
3298 >
3299 >  double value = 0.0;
3300 >
3301 >  if(variable == "deltaPhi") value = fabs(deltaPhi(object1->phi,object2->phi));
3302 >  else if(variable == "deltaEta") value = fabs(object1->eta - object2->eta);
3303 >  else if(variable == "deltaR") value = deltaR(object1->eta,object1->phi,object2->eta,object2->phi);
3304 >  else if(variable == "invMass"){
3305 >    TLorentzVector fourVector1(object1->px, object1->py, object1->pz, object1->energy);
3306 >    TLorentzVector fourVector2(object2->px, object2->py, object2->pz, object2->energy);
3307 >    value = (fourVector1 + fourVector2).M();
3308 >  }
3309 >  else if(variable == "pt"){
3310 >    TLorentzVector fourVector1(object1->px, object1->py, object1->pz, object1->energy);
3311 >    TLorentzVector fourVector2(object2->px, object2->py, object2->pz, object2->energy);
3312 >    value = (fourVector1 + fourVector2).Pt();
3313 >  }
3314 >  else if(variable == "threeDAngle")
3315 >    {
3316 >      TVector3 threeVector1(object1->px, object1->py, object1->pz);
3317 >      TVector3 threeVector2(object2->px, object2->py, object2->pz);
3318 >      value = (threeVector1.Angle(threeVector2));
3319 >    }
3320 >  else if(variable == "alpha")
3321 >    {
3322 >      static const double pi = 3.1415926535897932384626433832795028841971693993751058;
3323 >      TVector3 threeVector1(object1->px, object1->py, object1->pz);
3324 >      TVector3 threeVector2(object2->px, object2->py, object2->pz);
3325 >      value = (pi-threeVector1.Angle(threeVector2));
3326 >    }
3327 >  else if(variable == "deltaCorrectedD0Vertex") value = object1->correctedD0Vertex - object2->correctedD0Vertex;
3328 >  else if(variable == "deltaAbsCorrectedD0Vertex") value = fabs(object1->correctedD0Vertex) - fabs(object2->correctedD0Vertex);
3329 >  else if(variable == "d0Sign"){
3330 >    double d0Sign = (object1->correctedD0Vertex*object2->correctedD0Vertex)/fabs(object1->correctedD0Vertex*object2->correctedD0Vertex);
3331 >    if(d0Sign < 0) value = -0.5;
3332 >    else if (d0Sign > 0) value = 0.5;
3333 >    else value = -999;
3334 >  }
3335 >  else if(variable == "chargeProduct"){
3336 >    value = object1->charge*object2->charge;
3337 >  }
3338 >  else if(variable == "muon1CorrectedD0Vertex"){
3339 >    value = object1->correctedD0Vertex;
3340 >  }
3341 >  else if(variable == "muon2CorrectedD0Vertex"){
3342 >    value = object2->correctedD0Vertex;
3343 >  }
3344 >  else if(variable == "muon1timeAtIpInOut"){
3345 >    value = object1->timeAtIpInOut;
3346 >  }
3347 >  else if(variable == "muon2timeAtIpInOut"){
3348 >    value = object2->timeAtIpInOut;
3349 >  }
3350 >  else if(variable == "muon1correctedD0")
3351 >    {
3352 >      value = object1->correctedD0;
3353 >    }
3354 >  else if(variable == "muon2correctedD0")
3355 >    {
3356 >      value = object2->correctedD0;
3357 >    }
3358 >
3359 >  else{clog << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
3360 >
3361 >  value = applyFunction(function, value);
3362 >
3363 >  return value;
3364 > } // end muon-muon pair valueLookup
3365 >
3366 >
3367 > //!muon-photon pair valueLookup
3368 > double
3369 > OSUAnalysis::valueLookup (const BNmuon* object1, const BNphoton* object2, string variable, string function, string &stringValue){
3370 >
3371 >  double value = 0.0;
3372 >
3373 >  if(variable == "deltaPhi") value = fabs(deltaPhi(object1->phi,object2->phi));
3374 >  else if(variable == "deltaEta") value = fabs(object1->eta - object2->eta);
3375 >  else if(variable == "photonEta") value = object2->eta;
3376 >  else if(variable == "photonPt") value = object2->pt;
3377 >  else if(variable == "muonEta") value = object1->eta;
3378 >  else if(variable == "photonPhi") value = object2->phi;
3379 >  else if(variable == "muonPhi") value = object1->phi;
3380 >  else if(variable == "deltaR") value = deltaR(object1->eta,object1->phi,object2->eta,object2->phi);
3381 >  else if(variable == "photonGenMotherId") value = object2->genMotherId;
3382 >  else if(variable == "muonRelPFdBetaIso") value = (object1->pfIsoR04SumChargedHadronPt + max(0.0, object1->pfIsoR04SumNeutralHadronEt + object1->pfIsoR04SumPhotonEt - 0.5*object1->pfIsoR04SumPUPt)) / object1->pt;
3383 >  else if(variable == "invMass"){
3384 >    TLorentzVector fourVector1(object1->px, object1->py, object1->pz, object1->energy);
3385 >    TLorentzVector fourVector2(object2->px, object2->py, object2->pz, object2->energy);
3386 >    value = (fourVector1 + fourVector2).M();
3387 >  }
3388 >  else if(variable == "pt"){
3389 >    TLorentzVector fourVector1(object1->px, object1->py, object1->pz, object1->energy);
3390 >    TLorentzVector fourVector2(object2->px, object2->py, object2->pz, object2->energy);
3391 >    value = (fourVector1 + fourVector2).Pt();
3392 >  }
3393 >  else if(variable == "threeDAngle")
3394 >    {
3395 >      TVector3 threeVector1(object1->px, object1->py, object1->pz);
3396 >      TVector3 threeVector2(object2->px, object2->py, object2->pz);
3397 >      value = (threeVector1.Angle(threeVector2));
3398 >    }
3399 >  else if(variable == "alpha")
3400 >    {
3401 >      static const double pi = 3.1415926535897932384626433832795028841971693993751058;
3402 >      TVector3 threeVector1(object1->px, object1->py, object1->pz);
3403 >      TVector3 threeVector2(object2->px, object2->py, object2->pz);
3404 >      value = (pi-threeVector1.Angle(threeVector2));
3405 >    }
3406 >  else{clog << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
3407 >
3408 >  value = applyFunction(function, value);
3409 >
3410 >  return value;
3411 > }
3412 >
3413 > //!electron-photon pair valueLookup
3414 > double
3415 > OSUAnalysis::valueLookup (const BNelectron* object1, const BNphoton* object2, string variable, string function, string &stringValue){
3416 >
3417 >  double value = 0.0;
3418 >
3419 >  if(variable == "deltaPhi") value = fabs(deltaPhi(object1->phi,object2->phi));
3420 >  else if(variable == "deltaEta") value = fabs(object1->eta - object2->eta);
3421 >  else if(variable == "photonEta") value = object2->eta;
3422 >  else if(variable == "photonPt") value = object2->pt;
3423 >  else if(variable == "electronEta") value = object1->eta;
3424 >  else if(variable == "photonPhi") value = object2->phi;
3425 >  else if(variable == "electronPhi") value = object1->phi;
3426 >  else if(variable == "deltaR") value = deltaR(object1->eta,object1->phi,object2->eta,object2->phi);
3427 >  else if(variable == "photonGenMotherId") value = object2->genMotherId;
3428 >  else if(variable == "electronRelPFrhoIso") value = ( object1->chargedHadronIsoDR03 + max(0.0, object1->neutralHadronIsoDR03 + object1->photonIsoDR03 - object1->AEffDr03*object1->rhoPrime) ) / object1->pt;
3429 >  else if(variable == "invMass"){
3430 >    TLorentzVector fourVector1(object1->px, object1->py, object1->pz, object1->energy);
3431 >    TLorentzVector fourVector2(object2->px, object2->py, object2->pz, object2->energy);
3432 >    value = (fourVector1 + fourVector2).M();
3433 >  }
3434 >  else if(variable == "pt"){
3435 >    TLorentzVector fourVector1(object1->px, object1->py, object1->pz, object1->energy);
3436 >    TLorentzVector fourVector2(object2->px, object2->py, object2->pz, object2->energy);
3437 >    value = (fourVector1 + fourVector2).Pt();
3438 >  }
3439 >  else if(variable == "threeDAngle")
3440 >    {
3441 >      TVector3 threeVector1(object1->px, object1->py, object1->pz);
3442 >      TVector3 threeVector2(object2->px, object2->py, object2->pz);
3443 >      value = (threeVector1.Angle(threeVector2));
3444 >    }
3445 >  else if(variable == "alpha")
3446 >    {
3447 >      static const double pi = 3.1415926535897932384626433832795028841971693993751058;
3448 >      TVector3 threeVector1(object1->px, object1->py, object1->pz);
3449 >      TVector3 threeVector2(object2->px, object2->py, object2->pz);
3450 >      value = (pi-threeVector1.Angle(threeVector2));
3451 >    }
3452 >  else{clog << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
3453 >
3454 >  value = applyFunction(function, value);
3455 >
3456 >  return value;
3457 > }
3458 >
3459 > //!electron-electron pair valueLookup
3460 > double
3461 > OSUAnalysis::valueLookup (const BNelectron* object1, const BNelectron* object2, string variable, string function, string &stringValue){
3462 >
3463 >  double value = 0.0;
3464 >
3465 >  if(variable == "deltaPhi") value = fabs(deltaPhi(object1->phi,object2->phi));
3466 >  else if(variable == "deltaEta") value = fabs(object1->eta - object2->eta);
3467 >  else if(variable == "deltaR") value = deltaR(object1->eta,object1->phi,object2->eta,object2->phi);
3468 >  else if(variable == "invMass"){
3469 >    TLorentzVector fourVector1(object1->px, object1->py, object1->pz, object1->energy);
3470 >    TLorentzVector fourVector2(object2->px, object2->py, object2->pz, object2->energy);
3471 >    value = (fourVector1 + fourVector2).M();
3472 >  }
3473 >  else if(variable == "pt"){
3474 >    TLorentzVector fourVector1(object1->px, object1->py, object1->pz, object1->energy);
3475 >    TLorentzVector fourVector2(object2->px, object2->py, object2->pz, object2->energy);
3476 >    value = (fourVector1 + fourVector2).Pt();
3477 >  }
3478 >  else if(variable == "threeDAngle")
3479 >    {
3480 >      TVector3 threeVector1(object1->px, object1->py, object1->pz);
3481 >      TVector3 threeVector2(object2->px, object2->py, object2->pz);
3482 >      value = (threeVector1.Angle(threeVector2));
3483 >    }
3484 >  else if(variable == "deltaCorrectedD0Vertex") value = object1->correctedD0Vertex - object2->correctedD0Vertex;
3485 >  else if(variable == "deltaAbsCorrectedD0Vertex") value = fabs(object1->correctedD0Vertex) - fabs(object2->correctedD0Vertex);
3486 >  else if(variable == "d0Sign"){
3487 >    double d0Sign = (object1->correctedD0Vertex*object2->correctedD0Vertex)/fabs(object1->correctedD0Vertex*object2->correctedD0Vertex);
3488 >    if(d0Sign < 0) value = -0.5;
3489 >    else if (d0Sign > 0) value = 0.5;
3490 >    else value = -999;
3491 >  }
3492 >  else if(variable == "chargeProduct"){
3493 >    value = object1->charge*object2->charge;
3494 >  }
3495 >  else if(variable == "electron1CorrectedD0Vertex"){
3496 >    value = object1->correctedD0Vertex;
3497 >  }
3498 >  else if(variable == "electron2CorrectedD0Vertex"){
3499 >    value = object2->correctedD0Vertex;
3500 >  }
3501 >  else if(variable == "electron1CorrectedD0"){
3502 >    value = object1->correctedD0;
3503 >  }
3504 >  else if(variable == "electron2CorrectedD0"){
3505 >    value = object2->correctedD0;
3506 >  }
3507 >
3508 >  else{clog << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
3509 >
3510 >  value = applyFunction(function, value);
3511 >
3512 >  return value;
3513 > }
3514 >
3515 > //!electron-muon pair valueLookup
3516 > double
3517 > OSUAnalysis::valueLookup (const BNelectron* object1, const BNmuon* object2, string variable, string function, string &stringValue){
3518 >
3519 >  double value = 0.0;
3520 >
3521 >  if(variable == "deltaPhi") value = fabs(deltaPhi(object1->phi,object2->phi));
3522 >  else if(variable == "deltaEta") value = fabs(object1->eta - object2->eta);
3523 >  else if(variable == "deltaR") value = deltaR(object1->eta,object1->phi,object2->eta,object2->phi);
3524 >  else if(variable == "invMass"){
3525 >    TLorentzVector fourVector1(object1->px, object1->py, object1->pz, object1->energy);
3526 >    TLorentzVector fourVector2(object2->px, object2->py, object2->pz, object2->energy);
3527 >    value = (fourVector1 + fourVector2).M();
3528 >  }
3529 >  else if(variable == "pt"){
3530 >    TLorentzVector fourVector1(object1->px, object1->py, object1->pz, object1->energy);
3531 >    TLorentzVector fourVector2(object2->px, object2->py, object2->pz, object2->energy);
3532 >    value = (fourVector1 + fourVector2).Pt();
3533 >  }
3534 >  else if(variable == "threeDAngle")
3535 >    {
3536 >      TVector3 threeVector1(object1->px, object1->py, object1->pz);
3537 >      TVector3 threeVector2(object2->px, object2->py, object2->pz);
3538 >      value = (threeVector1.Angle(threeVector2));
3539 >    }
3540 >  else if(variable == "deltaCorrectedD0Vertex") value = object1->correctedD0Vertex - object2->correctedD0Vertex;
3541 >  else if(variable == "deltaAbsCorrectedD0Vertex") value = fabs(object1->correctedD0Vertex) - fabs(object2->correctedD0Vertex);
3542 >  else if(variable == "d0Sign"){
3543 >    double d0Sign = (object1->correctedD0Vertex*object2->correctedD0Vertex)/fabs(object1->correctedD0Vertex*object2->correctedD0Vertex);
3544 >    if(d0Sign < 0) value = -0.5;
3545 >    else if (d0Sign > 0) value = 0.5;
3546 >    else value = -999;
3547 >  }
3548 >  else if(variable == "chargeProduct"){
3549 >    value = object1->charge*object2->charge;
3550 >  }
3551 >  else if(variable == "electronCorrectedD0Vertex"){
3552 >    value = object1->correctedD0Vertex;
3553 >  }
3554 >  else if(variable == "muonCorrectedD0Vertex"){
3555 >    value = object2->correctedD0Vertex;
3556 >  }
3557 >  else if(variable == "electronCorrectedD0"){
3558 >    value = object1->correctedD0;
3559 >  }
3560 >  else if(variable == "muonCorrectedD0"){
3561 >    value = object2->correctedD0;
3562 >  }
3563 >  else if(variable == "electronDetIso"){
3564 >    value = (object1->trackIso) / object1->pt;
3565 >  }
3566 >  else if(variable == "muonDetIso"){
3567 >    value = (object2->trackIsoDR03) / object2->pt;
3568 >  }
3569 >  else if(variable == "electronRelPFrhoIso"){
3570 >    value = ( object1->chargedHadronIsoDR03 + max(0.0, object1->neutralHadronIsoDR03 + object1->photonIsoDR03 - object1->AEffDr03*object1->rhoPrime) ) / object1->pt;
3571 >  }
3572 >  else if(variable == "muonRelPFdBetaIso"){
3573 >    value = (object2->pfIsoR04SumChargedHadronPt + max(0.0, object2->pfIsoR04SumNeutralHadronEt + object2->pfIsoR04SumPhotonEt - 0.5*object2->pfIsoR04SumPUPt)) / object2->pt;
3574 >  }
3575 >  else{clog << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
3576 >  value = applyFunction(function, value);
3577 >
3578 >  return value;
3579 > } // end electron-muon pair valueLookup
3580 >
3581 >
3582 > //!electron-jet pair valueLookup
3583 > double
3584 > OSUAnalysis::valueLookup (const BNelectron* object1, const BNjet* object2, string variable, string function, string &stringValue){
3585 >
3586 >  double value = 0.0;
3587 >
3588 >  if(variable == "deltaPhi") value = fabs(deltaPhi(object1->phi,object2->phi));
3589 >  else if(variable == "deltaEta") value = fabs(object1->eta - object2->eta);
3590 >  else if(variable == "jetEta") value = object2->eta;
3591 >  else if(variable == "jetPhi") value = object2->phi;
3592 >  else if(variable == "electronEta") value = object1->eta;
3593 >  else if(variable == "electronPhi") value = object1->phi;
3594 >  else if(variable == "deltaR") value = deltaR(object1->eta,object1->phi,object2->eta,object2->phi);
3595 >  else if(variable == "invMass"){
3596 >    TLorentzVector fourVector1(object1->px, object1->py, object1->pz, object1->energy);
3597 >    TLorentzVector fourVector2(object2->px, object2->py, object2->pz, object2->energy);
3598 >    value = (fourVector1 + fourVector2).M();
3599 >  }
3600 >  else if(variable == "pt"){
3601 >    TLorentzVector fourVector1(object1->px, object1->py, object1->pz, object1->energy);
3602 >    TLorentzVector fourVector2(object2->px, object2->py, object2->pz, object2->energy);
3603 >    value = (fourVector1 + fourVector2).Pt();
3604 >  }
3605 >  else if(variable == "threeDAngle")
3606 >    {
3607 >      TVector3 threeVector1(object1->px, object1->py, object1->pz);
3608 >      TVector3 threeVector2(object2->px, object2->py, object2->pz);
3609 >      value = (threeVector1.Angle(threeVector2));
3610 >    }
3611 >  else if(variable == "chargeProduct"){
3612 >    value = object1->charge*object2->charge;
3613 >  }
3614 >
3615 >  else{clog << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
3616 >  value = applyFunction(function, value);
3617 >
3618 >  return value;
3619 > }
3620 >
3621 > //!photon-jet pair valueLookup
3622 > double
3623 > OSUAnalysis::valueLookup (const BNphoton* object1, const BNjet* object2, string variable, string function, string &stringValue){
3624 >
3625 >  double value = 0.0;
3626 >
3627 >  if(variable == "deltaPhi") value = fabs(deltaPhi(object1->phi,object2->phi));
3628 >  else if(variable == "deltaEta") value = fabs(object1->eta - object2->eta);
3629 >  else if(variable == "jetEta") value = object2->eta;
3630 >  else if(variable == "jetPhi") value = object2->phi;
3631 >  else if(variable == "photonEta") value = object1->eta;
3632 >  else if(variable == "photonPhi") value = object1->phi;
3633 >  else if(variable == "photonGenMotherId") value = object1->genMotherId;
3634 >  else if(variable == "deltaR") value = deltaR(object1->eta,object1->phi,object2->eta,object2->phi);
3635 >  else if(variable == "invMass"){
3636 >    TLorentzVector fourVector1(object1->px, object1->py, object1->pz, object1->energy);
3637 >    TLorentzVector fourVector2(object2->px, object2->py, object2->pz, object2->energy);
3638 >    value = (fourVector1 + fourVector2).M();
3639 >  }
3640 >  else if(variable == "pt"){
3641 >    TLorentzVector fourVector1(object1->px, object1->py, object1->pz, object1->energy);
3642 >    TLorentzVector fourVector2(object2->px, object2->py, object2->pz, object2->energy);
3643 >    value = (fourVector1 + fourVector2).Pt();
3644 >  }
3645 >  else if(variable == "threeDAngle")
3646 >    {
3647 >      TVector3 threeVector1(object1->px, object1->py, object1->pz);
3648 >      TVector3 threeVector2(object2->px, object2->py, object2->pz);
3649 >      value = (threeVector1.Angle(threeVector2));
3650 >    }
3651 >  else{clog << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
3652 >  value = applyFunction(function, value);
3653 >
3654 >  return value;
3655 > }
3656 >
3657 > // track-jet pair valueLookup
3658 > double
3659 > OSUAnalysis::valueLookup (const BNtrack* object1, const BNjet* object2, string variable, string function, string &stringValue){
3660 >
3661 >  double value = 0.0;
3662 >
3663 >  if(variable == "deltaPhi") value = fabs(deltaPhi(object1->phi,object2->phi));
3664 >  else if(variable == "deltaR") value = deltaR(object1->eta,object1->phi,object2->eta,object2->phi);
3665 >
3666 >  else{clog << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
3667 >  value = applyFunction(function, value);
3668 >
3669 >  return value;
3670 >
3671 > }
3672 >
3673 >
3674 >
3675 > // met-jet pair valueLookup
3676 > double
3677 > OSUAnalysis::valueLookup (const BNmet* object1, const BNjet* object2, string variable, string function, string &stringValue){
3678 >
3679 >  double value = 0.0;
3680 >
3681 >  if(variable == "deltaPhi") value = fabs(deltaPhi(object1->phi,object2->phi));
3682 >
3683 >  else{clog << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
3684 >  value = applyFunction(function, value);
3685 >
3686 >  return value;
3687 >
3688 > }  
3689 >
3690 >
3691 >
3692 > //!muon-jet pair valueLookup
3693 > double
3694 > OSUAnalysis::valueLookup (const BNmuon* object1, const BNjet* object2, string variable, string function, string &stringValue){
3695 >
3696 >  double value = 0.0;
3697 >
3698 >  if(variable == "deltaPhi") value = fabs(deltaPhi(object1->phi,object2->phi));
3699 >  else if(variable == "jetEta") value = object2->eta;
3700 >  else if(variable == "relPFdBetaIso") value = (object1->pfIsoR04SumChargedHadronPt + max(0.0, object1->pfIsoR04SumNeutralHadronEt + object1->pfIsoR04SumPhotonEt - 0.5*object1->pfIsoR04SumPUPt)) / object1->pt;
3701 >  else if(variable == "jetPt") value = object2->pt;
3702 >  else if(variable == "jetPhi") value = object2->phi;
3703 >  else if(variable == "deltaPt") value = object1->pt - object2->pt;
3704 >  else if(variable == "muonEta") value = object1->eta;
3705 >  else if(variable == "muonPt") value = object1->pt;
3706 >  else if(variable == "muonPhi") value = object1->phi;
3707 >  else if(variable == "deltaEta") value = fabs(object1->eta - object2->eta);          
3708 >  else if(variable == "deltaR") value = deltaR(object1->eta,object1->phi,object2->eta,object2->phi);
3709 >  else if(variable == "invMass"){
3710 >    TLorentzVector fourVector1(object1->px, object1->py, object1->pz, object1->energy);
3711 >    TLorentzVector fourVector2(object2->px, object2->py, object2->pz, object2->energy);
3712 >    value = (fourVector1 + fourVector2).M();
3713 >  }
3714 >  else if(variable == "pt"){
3715 >    TLorentzVector fourVector1(object1->px, object1->py, object1->pz, object1->energy);
3716 >    TLorentzVector fourVector2(object2->px, object2->py, object2->pz, object2->energy);
3717 >    value = (fourVector1 + fourVector2).Pt();
3718 >  }
3719 >  else if(variable == "threeDAngle")
3720 >    {
3721 >      TVector3 threeVector1(object1->px, object1->py, object1->pz);
3722 >      TVector3 threeVector2(object2->px, object2->py, object2->pz);
3723 >      value = (threeVector1.Angle(threeVector2));
3724 >    }
3725 >  else if(variable == "chargeProduct"){
3726 >    value = object1->charge*object2->charge;
3727 >  }
3728 >
3729 >  else{clog << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
3730 >  value = applyFunction(function, value);
3731 >
3732 >  return value;
3733 > }
3734 >
3735 > //!muon-event valueLookup
3736 > double
3737 > OSUAnalysis::valueLookup (const BNmuon* object1, const BNevent* object2, string variable, string function, string &stringValue){
3738 >
3739 >  double value = 0.0;
3740 >
3741 >  if(variable == "muonEta") value = object1->eta;
3742 >  else if(variable == "muonPt") value = object1->pt;
3743 >  else if(variable == "muonPhi") value = object1->phi;
3744 >  else if(variable == "Ht") value = getHt(jets.product());
3745 >  else if(variable == "pthat")   value = object2->pthat;
3746 >  else if(variable == "relPFdBetaIso") value = (object1->pfIsoR04SumChargedHadronPt + max(0.0, object1->pfIsoR04SumNeutralHadronEt + object1->pfIsoR04SumPhotonEt - 0.5*object1->pfIsoR04SumPUPt)) / object1->pt;
3747 >  else{clog << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
3748 >  value = applyFunction(function, value);
3749 >
3750 >  return value;
3751 > }
3752 > //!jet-jet pair valueLookup
3753 > double
3754 > OSUAnalysis::valueLookup (const BNjet* object1, const BNjet* object2, string variable, string function, string &stringValue){
3755 >
3756 >  double value = 0.0;
3757 >
3758 >  if(variable == "deltaPhi") value = fabs(deltaPhi(object1->phi,object2->phi));
3759 >  else if(variable == "deltaEta") value = fabs(object1->eta - object2->eta);
3760 >  else if(variable == "deltaPt") value = object1->pt - object2->pt;
3761 >  else if(variable == "deltaR") value = deltaR(object1->eta,object1->phi,object2->eta,object2->phi);
3762 >  else if(variable == "invMass"){
3763 >    TLorentzVector fourVector1(object1->px, object1->py, object1->pz, object1->energy);
3764 >    TLorentzVector fourVector2(object2->px, object2->py, object2->pz, object2->energy);
3765 >    value = (fourVector1 + fourVector2).M();
3766 >  }
3767 >  else if(variable == "pt"){
3768 >    TLorentzVector fourVector1(object1->px, object1->py, object1->pz, object1->energy);
3769 >    TLorentzVector fourVector2(object2->px, object2->py, object2->pz, object2->energy);
3770 >    value = (fourVector1 + fourVector2).Pt();
3771 >  }
3772 >  else if(variable == "threeDAngle")
3773 >    {
3774 >      TVector3 threeVector1(object1->px, object1->py, object1->pz);
3775 >      TVector3 threeVector2(object2->px, object2->py, object2->pz);
3776 >      value = (threeVector1.Angle(threeVector2));
3777 >    }
3778 >  else if(variable == "chargeProduct"){
3779 >    value = object1->charge*object2->charge;
3780 >  }
3781 >
3782 >  else{clog << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
3783 >  value = applyFunction(function, value);
3784 >
3785 >  return value;
3786 > }
3787 >
3788 > //!electron-track pair valueLookup
3789 > double
3790 > OSUAnalysis::valueLookup (const BNelectron* object1, const BNtrack* object2, string variable, string function, string &stringValue){
3791 >  double electronMass = 0.000511;
3792 >  double value = 0.0;
3793 >  TLorentzVector fourVector1(0, 0, 0, 0);
3794 >  TLorentzVector fourVector2(0, 0, 0, 0);
3795 >  if(variable == "deltaPhi") value = fabs(deltaPhi(object1->phi,object2->phi));
3796 >  else if(variable == "deltaEta") value = fabs(object1->eta - object2->eta);
3797 >  else if(variable == "deltaR") value = deltaR(object1->eta,object1->phi,object2->eta,object2->phi);
3798 >  else if(variable == "invMass"){
3799 >    fourVector1.SetPtEtaPhiM(object1->pt, object1->eta, object1->phi, electronMass);
3800 >    fourVector2.SetPtEtaPhiM(object2->pt, object2->eta, object2->phi, electronMass );
3801 >
3802 >    value = (fourVector1 + fourVector2).M();
3803 >  }
3804 >  else if(variable == "chargeProduct"){
3805 >    value = object1->charge*object2->charge;
3806 >  }
3807 >  else{clog << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
3808 >  value = applyFunction(function, value);
3809 >  return value;
3810 >
3811 > }
3812 >
3813 >
3814 > //!muon-track pair valueLookup
3815 > double
3816 > OSUAnalysis::valueLookup (const BNmuon* object1, const BNtrack* object2, string variable, string function, string &stringValue){
3817 >  double pionMass = 0.140;
3818 >  double muonMass = 0.106;
3819 >  double value = 0.0;
3820 >  TLorentzVector fourVector1(0, 0, 0, 0);
3821 >  TLorentzVector fourVector2(0, 0, 0, 0);
3822 >  if(variable == "deltaPhi") value = fabs(deltaPhi(object1->phi,object2->phi));
3823 >  else if(variable == "deltaEta") value = fabs(object1->eta - object2->eta);
3824 >  else if(variable == "deltaR") value = deltaR(object1->eta,object1->phi,object2->eta,object2->phi);
3825 >  else if(variable == "invMass"){
3826 >    fourVector1.SetPtEtaPhiM(object1->pt, object1->eta, object1->phi, muonMass);
3827 >    fourVector2.SetPtEtaPhiM(object2->pt, object2->eta, object2->phi, pionMass );
3828 >
3829 >    value = (fourVector1 + fourVector2).M();
3830 >  }
3831 >  else if(variable == "chargeProduct"){
3832 >    value = object1->charge*object2->charge;
3833 >  }
3834 >
3835 >  else{clog << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
3836 >  value = applyFunction(function, value);
3837 >  return value;
3838 > }
3839 >
3840 > //!tau-tau pair valueLookup
3841 > double
3842 > OSUAnalysis::valueLookup (const BNtau* object1, const BNtau* object2, string variable, string function, string &stringValue){
3843 >  double value = 0.0;
3844 >  if(variable == "deltaPhi") value = fabs(deltaPhi(object1->phi,object2->phi));
3845 >  else if(variable == "deltaEta") value = fabs(object1->eta - object2->eta);
3846 >  else if(variable == "deltaR") value = deltaR(object1->eta,object1->phi,object2->eta,object2->phi);
3847 >  else if(variable == "invMass"){
3848 >    TLorentzVector fourVector1(object1->px, object1->py, object1->pz, object1->energy);
3849 >    TLorentzVector fourVector2(object2->px, object2->py, object2->pz, object2->energy);
3850 >    value = (fourVector1 + fourVector2).M();
3851 >  }
3852 >
3853 >  else if(variable == "chargeProduct"){
3854 >    value = object1->charge*object2->charge;
3855 >  }
3856 >
3857 >  else{clog << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
3858 >  value = applyFunction(function, value);
3859 >  return value;
3860 > }
3861 >
3862 > //!muon-tau pair valueLookup
3863 > double
3864 > OSUAnalysis::valueLookup (const BNmuon* object1, const BNtau* object2, string variable, string function, string &stringValue){
3865 >  double value = 0.0;
3866 >  if(variable == "deltaPhi") value = fabs(deltaPhi(object1->phi,object2->phi));
3867 >  else if(variable == "deltaEta") value = fabs(object1->eta - object2->eta);
3868 >  else if(variable == "deltaR") value = deltaR(object1->eta,object1->phi,object2->eta,object2->phi);
3869 >  else if(variable == "invMass"){
3870 >    TLorentzVector fourVector1(object1->px, object1->py, object1->pz, object1->energy);
3871 >    TLorentzVector fourVector2(object2->px, object2->py, object2->pz, object2->energy);
3872 >    value = (fourVector1 + fourVector2).M();
3873 >  }
3874 >
3875 >  else if(variable == "chargeProduct"){
3876 >    value = object1->charge*object2->charge;
3877 >  }
3878 >
3879 >  else{clog << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
3880 >  value = applyFunction(function, value);
3881 >  return value;
3882 > }
3883 >
3884 > //!tau-track pair valueLookup
3885 > double
3886 > OSUAnalysis::valueLookup (const BNtau* object1, const BNtrack* object2, string variable, string function, string &stringValue){
3887 >  double value = 0.0;
3888 >  if(variable == "deltaPhi") value = fabs(deltaPhi(object1->phi,object2->phi));
3889 >  else if(variable == "deltaR") value = deltaR(object1->eta,object1->phi,object2->eta,object2->phi);
3890 >  else if(variable == "chargeProduct"){
3891 >    value = object1->charge*object2->charge;
3892 >  }
3893 >
3894 >  else{clog << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
3895 >  value = applyFunction(function, value);
3896 >  return value;
3897 > }
3898 >
3899 >
3900 > //!track-event pair valueLookup
3901 > double
3902 > OSUAnalysis::valueLookup (const BNtrack* object1, const BNevent* object2, string variable, string function, string &stringValue){
3903 >
3904 >  double value = 0.0;
3905 >  double pMag = sqrt(object1->pt * object1->pt +
3906 >                     object1->pz * object1->pz);
3907 >
3908 >  if      (variable == "numPV")                      value = object2->numPV;
3909 >  else if (variable == "caloTotDeltaRp5")            value =  (object1->caloHadDeltaRp5 + object1->caloEMDeltaRp5);
3910 >  else if (variable == "caloTotDeltaRp5ByP")         value = ((object1->caloHadDeltaRp5 + object1->caloEMDeltaRp5)/pMag);
3911 >  else if (variable == "caloTotDeltaRp5_RhoCorr")    value = getTrkCaloTotRhoCorr(object1);
3912 >  else if (variable == "caloTotDeltaRp5ByP_RhoCorr") value = getTrkCaloTotRhoCorr(object1) / pMag;
3913 >
3914 >  else { clog << "WARNING: invalid variable '" << variable << "'\n"; value = -999; }
3915 >
3916 >  value = applyFunction(function, value);
3917 >
3918 >  return value;
3919 >
3920 > }
3921 >
3922 > //!electron-trigobj pair valueLookup
3923 > double
3924 > OSUAnalysis::valueLookup (const BNelectron* object1, const BNtrigobj* object2, string variable, string function, string &stringValue){
3925 >
3926 >  double value = 0.0;
3927 >
3928 >  if (variable == "deltaR") value = deltaR(object1->eta,object1->phi,object2->eta,object2->phi);
3929 >  else if (variable == "match"){
3930 >    if (deltaR(object1->eta,object1->phi,object2->eta,object2->phi) < 0.2 && abs(object2->id) == 11)
3931 >      stringValue = object2->filter;
3932 >    else
3933 >      stringValue = "none";
3934 >  }
3935 >
3936 >  else { clog << "WARNING: invalid variable '" << variable << "'\n"; value = -999; }
3937 >
3938 >  value = applyFunction(function, value);
3939 >
3940 >  return value;
3941 >
3942 > }
3943 >
3944 > //!muon-trigobj pair valueLookup
3945 > double
3946 > OSUAnalysis::valueLookup (const BNmuon* object1, const BNtrigobj* object2, string variable, string function, string &stringValue){
3947 >
3948 >  double value = 0.0;
3949 >
3950 >  if (variable == "deltaR") value = deltaR(object1->eta,object1->phi,object2->eta,object2->phi);
3951 >
3952 >  else { clog << "WARNING: invalid variable '" << variable << "'\n"; value = -999; }
3953 >
3954 >  value = applyFunction(function, value);
3955 >
3956 >  return value;
3957 >
3958 > }
3959 >
3960 > //!stop valueLookup
3961 > double
3962 > OSUAnalysis::valueLookup (const BNstop* object, string variable, string function, string &stringValue){
3963 >
3964 >
3965 >  double value = 0.0;
3966 >
3967 >  if(variable == "ctau") value = object->ctau;
3968 >
3969 >  else if (variable == "d0"){
3970 >    double vx = object->vx - chosenVertex ()->x,
3971 >      vy = object->vy - chosenVertex ()->y,
3972 >      px = object->px,
3973 >      py = object->py,
3974 >      pt = object->pt;
3975 >    value = (-vx * py + vy * px) / pt;
3976 >  }
3977 >
3978 >  else if (variable == "dz"){
3979 >    double vx = object->vx - chosenVertex ()->x,
3980 >      vy = object->vy - chosenVertex ()->y,
3981 >      vz = object->vz - chosenVertex ()->z,
3982 >      px = object->px,
3983 >      py = object->py,
3984 >      pz = object->pz,
3985 >      pt = object->pt;
3986 >    value = vz - (vx * px + vy * py)/pt * (pz/pt);
3987 >  }
3988 >
3989 >  else if (variable == "minD0"){
3990 >    double minD0=999;
3991 >    for(BNprimaryvertexCollection::const_iterator vertex = primaryvertexs->begin (); vertex != primaryvertexs->end (); vertex++){
3992 >      double vx = object->vx - vertex->x,
3993 >        vy = object->vy - vertex->y,
3994 >        px = object->px,
3995 >        py = object->py,
3996 >        pt = object->pt;
3997 >      value = (-vx * py + vy * px) / pt;
3998 >      if(abs(value) < abs(minD0)) minD0 = value;
3999 >    }
4000 >    value = minD0;
4001 >  }
4002 >  else if (variable == "minDz"){
4003 >    double minDz=999;
4004 >    for(BNprimaryvertexCollection::const_iterator vertex = primaryvertexs->begin (); vertex != primaryvertexs->end (); vertex++){
4005 >      double vx = object->vx - vertex->x,
4006 >        vy = object->vy - vertex->y,
4007 >        vz = object->vz - vertex->z,
4008 >        px = object->px,
4009 >        py = object->py,
4010 >        pz = object->pz,
4011 >        pt = object->pt;
4012 >      value = vz - (vx * px + vy * py)/pt * (pz/pt);
4013 >      if(abs(value) < abs(minDz)) minDz = value;
4014 >    }
4015 >    value = minDz;
4016 >  }
4017 >  else if(variable == "distToVertex"){
4018 >    value = sqrt((object->vx-chosenVertex()->x)*(object->vx-chosenVertex()->x) + \
4019 >                 (object->vy-chosenVertex()->y)*(object->vy-chosenVertex()->y) + \
4020 >                 (object->vz-chosenVertex()->z)*(object->vz-chosenVertex()->z));
4021 >  }
4022 >  else if (variable == "minDistToVertex"){
4023 >    double minDistToVertex=999;
4024 >    for(BNprimaryvertexCollection::const_iterator vertex = primaryvertexs->begin (); vertex != primaryvertexs->end (); vertex++){
4025 >      value = sqrt((object->vx-vertex->x)*(object->vx-vertex->x) + \
4026 >                   (object->vy-vertex->y)*(object->vy-vertex->y) + \
4027 >                   (object->vz-vertex->z)*(object->vz-vertex->z));
4028 >
4029 >      if(abs(value) < abs(minDistToVertex)) minDistToVertex = value;
4030 >    }
4031 >    value = minDistToVertex;
4032 >  }
4033 >  else if (variable == "distToVertexDifference"){
4034 >    double minDistToVertex=999;
4035 >    for(BNprimaryvertexCollection::const_iterator vertex = primaryvertexs->begin (); vertex != primaryvertexs->end (); vertex++){
4036 >      value = sqrt((object->vx-vertex->x)*(object->vx-vertex->x) + \
4037 >                   (object->vy-vertex->y)*(object->vy-vertex->y) + \
4038 >                   (object->vz-vertex->z)*(object->vz-vertex->z));
4039 >
4040 >      if(abs(value) < abs(minDistToVertex)) minDistToVertex = value;
4041 >    }
4042 >    double distToChosenVertex = sqrt((object->vx-chosenVertex()->x)*(object->vx-chosenVertex()->x) + \
4043 >                                     (object->vy-chosenVertex()->y)*(object->vy-chosenVertex()->y) + \
4044 >                                     (object->vz-chosenVertex()->z)*(object->vz-chosenVertex()->z));
4045 >
4046 >    value = distToChosenVertex - minDistToVertex;
4047 >  }
4048 >
4049 >  else if (variable == "closestVertexRank"){
4050 >    double minDistToVertex=999;
4051 >    int vertex_rank = 0;
4052 >    for(BNprimaryvertexCollection::const_iterator vertex = primaryvertexs->begin (); vertex != primaryvertexs->end (); vertex++){
4053 >      vertex_rank++;
4054 >      int dist = sqrt((object->vx-vertex->x)*(object->vx-vertex->x) + \
4055 >                      (object->vy-vertex->y)*(object->vy-vertex->y) + \
4056 >                      (object->vz-vertex->z)*(object->vz-vertex->z));
4057 >
4058 >      if(abs(dist) < abs(minDistToVertex)){
4059 >        value = vertex_rank;
4060 >        minDistToVertex = dist;
4061 >      }
4062 >    }
4063 >  }
4064 >
4065 >  else if (variable == "decaysToTau"){
4066 >    value = abs (object->daughter0Id) == 15 || abs (object->daughter1Id) == 15;
4067 >  }
4068 >
4069 >
4070 >
4071 >
4072 >  else { clog << "WARNING: invalid variable '" << variable << "'\n"; value = -999; }
4073  
4074    value = applyFunction(function, value);
4075  
4076    return value;
4077 +
4078 + } // end stop valueLookup
4079 +
4080 +
4081 +
4082 +
4083 +
4084 + // Calculate the number of tracks in cone of DeltaR<0.5 around track1.
4085 + // Return true iff no other tracks are found in this cone.
4086 + int
4087 + OSUAnalysis::getTrkIsIso (const BNtrack* track1, const BNtrackCollection* trackColl){
4088 +  for(BNtrackCollection::const_iterator track2 = trackColl->begin(); track2 !=trackColl->end(); track2++){
4089 +    if(track1->eta == track2->eta && track1->phi == track2->phi) continue; // Do not compare the track to itself.
4090 +    double deltaRtrk = deltaR(track1->eta, track1->phi, track2->eta, track2->phi);
4091 +    if(deltaRtrk < 0.5) return 0;
4092 +  }
4093 +  return 1;
4094 +
4095 + }
4096 +
4097 + //calculate the scalar sum of Jet Pt in the event.
4098 + double
4099 + OSUAnalysis::getHt (const BNjetCollection* jetColl){
4100 +  double Ht = 0;
4101 +  for(BNjetCollection::const_iterator jet = jetColl->begin(); jet !=jetColl->end(); jet++){
4102 +    Ht += abs(jet->pt);
4103 +  }
4104 +  return Ht;
4105 + }
4106 +
4107 + double
4108 + OSUAnalysis::getTrkPtRes (const BNtrack* track1){
4109 +
4110 +  double ptTrue = getTrkPtTrue(track1, mcparticles.product());
4111 +  double PtRes = (track1->pt - ptTrue) / ptTrue;
4112 +
4113 +  return PtRes;
4114 +
4115 + }
4116 +
4117 +
4118 + double
4119 + OSUAnalysis::getTrkPtTrue (const BNtrack* track1, const BNmcparticleCollection* genPartColl){
4120 +  double value = -99;
4121 +  double genDeltaRLowest = 999;
4122 +
4123 +  for (BNmcparticleCollection::const_iterator genPart = genPartColl->begin(); genPart !=genPartColl->end(); genPart++){
4124 +    double genDeltaRtemp = deltaR(genPart->eta, genPart->phi,track1->eta, track1->phi);
4125 +    if (genDeltaRtemp < genDeltaRLowest) {
4126 +      genDeltaRLowest = genDeltaRtemp;
4127 +      if (genDeltaRLowest < 0.05) {   // Only consider it truth-matched if DeltaR<0.15.
4128 +        double ptTrue = genPart->pt;
4129 +        value = ptTrue;
4130 +      }
4131 +    }
4132 +  }
4133 +
4134 +  return value;
4135 +
4136 + }
4137 +
4138 + double
4139 + OSUAnalysis::getTrkCaloTotRhoCorr(const BNtrack* track) {
4140 +  // Return the pile-up (rho) corrected isolation energy, i.e., the total calorimeter energy around the candidate track.
4141 +  if (!useTrackCaloRhoCorr_) return -99;
4142 +  // if (!rhokt6CaloJetsHandle_) {
4143 +  //   clog << "ERROR [getTrkCaloTotRhoCorr]:  The collection rhokt6CaloJetsHandle is not available!" << endl;
4144 +  //   return -99;
4145 +  // }
4146 +  double radDeltaRCone = 0.5;
4147 +  double rhoCorr_kt6CaloJets = *rhokt6CaloJetsHandle_ * TMath::Pi() * pow(radDeltaRCone, 2);  // Define effective area as pi*r^2, where r is radius of DeltaR cone.
4148 +  double rawCaloTot = track->caloHadDeltaRp5 + track->caloEMDeltaRp5;
4149 +  double caloTotRhoCorrCalo = TMath::Max(0., rawCaloTot - rhoCorr_kt6CaloJets);
4150 +  return caloTotRhoCorrCalo;
4151 +
4152 + }
4153 +
4154 +
4155 +
4156 +
4157 + //creates a map of the dead Ecal channels in the barrel and endcap
4158 + //to see how the map of dead Ecal channels is created look at function getChannelStatusMaps() here:
4159 + //http://cmssw.cvs.cern.ch/cgi-bin/cmssw.cgi/UserCode/jbrinson/DisappTrk/OSUT3Analysis/AnaTools/src/OSUAnalysis.cc?revision=1.88&view=markup
4160 + void
4161 + OSUAnalysis::WriteDeadEcal (){
4162 +  double etaEcal, phiEcal;
4163 +  ifstream DeadEcalFile(deadEcalFile_);
4164 +  if(!DeadEcalFile) {
4165 +    clog << "Error: DeadEcalFile has not been found." << endl;
4166 +    return;
4167 +  }
4168 +  if(DeadEcalVec.size()!= 0){
4169 +    clog << "Error: DeadEcalVec has a nonzero size" << endl;
4170 +    return;
4171 +  }
4172 +  while(!DeadEcalFile.eof())
4173 +    {
4174 +      DeadEcalFile >> etaEcal >> phiEcal;
4175 +      DeadEcal newChan;
4176 +      newChan.etaEcal = etaEcal;
4177 +      newChan.phiEcal = phiEcal;
4178 +      DeadEcalVec.push_back(newChan);
4179 +    }
4180 +  if(DeadEcalVec.size() == 0) clog << "Warning: No dead Ecal channels have been found." << endl;
4181 + }
4182 +
4183 + //if a track is found within dR<0.05 of a dead Ecal channel value = 1, otherwise value = 0
4184 + int
4185 + OSUAnalysis::getTrkIsMatchedDeadEcal (const BNtrack* track1){
4186 +  double deltaRLowest = 999;
4187 +  int value = 0;
4188 +  if (DeadEcalVec.size() == 0) WriteDeadEcal();
4189 +  for(vector<DeadEcal>::const_iterator ecal = DeadEcalVec.begin(); ecal != DeadEcalVec.end(); ++ecal){
4190 +    double eta = ecal->etaEcal;
4191 +    double phi = ecal->phiEcal;
4192 +    double deltaRtemp = deltaR(eta, phi, track1->eta, track1->phi);
4193 +    if(deltaRtemp < deltaRLowest) deltaRLowest = deltaRtemp;
4194 +  }
4195 +  if (deltaRLowest<0.05) {value = 1;}
4196 +  else {value = 0;}
4197 +  return value;
4198   }
4199  
4200 + // Returns the smallest DeltaR between the object and any generated true particle in the event.
4201 + template <class InputObject>
4202 + double OSUAnalysis::getGenDeltaRLowest(InputObject object){
4203 +  double genDeltaRLowest = 999.;
4204 +  for(BNmcparticleCollection::const_iterator mcparticle = mcparticles->begin (); mcparticle != mcparticles->end (); mcparticle++){
4205 +    double deltaRtemp = deltaR(mcparticle->eta, mcparticle->phi, object->eta, object->phi);
4206 +    if (deltaRtemp < genDeltaRLowest) genDeltaRLowest = deltaRtemp;
4207 +  }
4208 +  return genDeltaRLowest;
4209 + }
4210  
4211   double
4212   OSUAnalysis::applyFunction(string function, double value){
4213  
4214 <  if(function == "abs") value = abs(value);
4214 >  if(function == "abs") value = fabs(value);
4215 >  else if(function == "fabs") value = fabs(value);
4216 >  else if(function == "log10") value = log10(value);
4217 >  else if(function == "log") value = log10(value);
4218  
4219 +  else if(function == "") value = value;
4220 +  else{clog << "WARNING: invalid function '" << function << "'\n";}
4221  
4222    return value;
4223  
# Line 1446 | Line 4227 | OSUAnalysis::applyFunction(string functi
4227   template <class InputCollection>
4228   void OSUAnalysis::setObjectFlags(cut &currentCut, uint currentCutIndex, flagMap &individualFlags, flagMap &cumulativeFlags, InputCollection inputCollection, string inputType){
4229  
4230 +  if (currentCut.inputCollection.find("pair")!=string::npos)  {
4231 +    string obj1, obj2;
4232 +    getTwoObjs(currentCut.inputCollection, obj1, obj2);
4233 +    if (inputType==obj1 ||
4234 +        inputType==obj2) {
4235 +      // Do not add a cut to individualFlags or cumulativeFlags, if the cut is on a paired collection,
4236 +      // and the inputType is a member of the pair.
4237 +      // The cut will instead be applied when the setObjectFlags() is called for the paired collection.
4238 +      // For example, if currentCut.inputCollection==electron-muon pairs,
4239 +      // then the flags should not be set here when inputType==muons or inputType==electrons.
4240 +      return;
4241 +    }
4242 +  }
4243  
4244    for (uint object = 0; object != inputCollection->size(); object++){
4245  
4246 <    bool decision = true;//object passes if this cut doesn't cut on that type of object
4246 >    bool cutDecision = true;//object passes if this cut doesn't cut on that type of object
4247 >    bool plotDecision = true;
4248  
4249      if(currentCut.inputCollection == inputType){
4250  
4251 <      double value = valueLookup(&inputCollection->at(object), currentCut.variable, currentCut.function);
4251 >      vector<bool> subcutDecisions;
4252 >      for( int subcutIndex = 0; subcutIndex != currentCut.numSubcuts; subcutIndex++){
4253 >        string stringValue = "";
4254 >        double value = valueLookup(&inputCollection->at(object), currentCut.variables.at(subcutIndex), currentCut.functions.at(subcutIndex), stringValue);
4255 >        if (stringValue == "") subcutDecisions.push_back(evaluateComparison(value,currentCut.comparativeOperators.at(subcutIndex),currentCut.cutValues.at(subcutIndex)));
4256 >        else subcutDecisions.push_back(evaluateComparison(stringValue,currentCut.comparativeOperators.at(subcutIndex),currentCut.cutStringValues.at(subcutIndex)));
4257  
4258 <      decision = evaluateComparison(value,currentCut.comparativeOperator,currentCut.cutValue);
4258 >      }
4259 >      if(currentCut.numSubcuts == 1) cutDecision = subcutDecisions.at(0);
4260 >      else{
4261 >        bool tempDecision = true;
4262 >        for( int subcutIndex = 0;subcutIndex != currentCut.numSubcuts-1; subcutIndex++){
4263 >          if(currentCut.logicalOperators.at(subcutIndex) == "&" || currentCut.logicalOperators.at(subcutIndex) == "&&")
4264 >            tempDecision = subcutDecisions.at(subcutIndex) && subcutDecisions.at(subcutIndex+1);
4265 >          else if(currentCut.logicalOperators.at(subcutIndex) == "|"|| currentCut.logicalOperators.at(subcutIndex) == "||")
4266 >            tempDecision = subcutDecisions.at(subcutIndex) || subcutDecisions.at(subcutIndex+1);
4267 >        }
4268 >        cutDecision = tempDecision;
4269 >      }
4270 >      //invert the cut for plotting if this cut is a veto
4271 >      if(currentCut.isVeto) plotDecision = !cutDecision;
4272 >      else plotDecision = cutDecision;
4273      }
1460    individualFlags[inputType].at(currentCutIndex).push_back(decision);
4274  
4275 +    individualFlags.at(inputType).at(currentCutIndex).push_back(make_pair(cutDecision,plotDecision));
4276  
4277 <    //set flags for objects that pass each cut AND all the previous cuts
4278 <    bool previousCumulativeFlag = true;
4277 >    //set flags for objects that pass this cut AND all the previous cuts
4278 >    bool previousCumulativeCutFlag = true;
4279 >    for(uint previousCutIndex = 0; previousCutIndex != currentCutIndex; previousCutIndex++){
4280 >      if(previousCumulativeCutFlag && individualFlags.at(inputType).at(previousCutIndex).at(object).first) previousCumulativeCutFlag = true;
4281 >      else{ previousCumulativeCutFlag = false; break;}
4282 >    }
4283 >    previousCumulativeCutFlag = previousCumulativeCutFlag && cutDecision;
4284 >    bool previousCumulativePlotFlag = true;
4285      for(uint previousCutIndex = 0; previousCutIndex != currentCutIndex; previousCutIndex++){
4286 <      if(previousCumulativeFlag && individualFlags[inputType].at(previousCutIndex).at(object)) previousCumulativeFlag = true;
4287 <      else{ previousCumulativeFlag = false; break;}
4286 >      if(previousCumulativePlotFlag && individualFlags.at(inputType).at(previousCutIndex).at(object).second) previousCumulativePlotFlag = true;
4287 >      else{ previousCumulativePlotFlag = false; break;}
4288      }
4289 <    cumulativeFlags[inputType].at(currentCutIndex).push_back(previousCumulativeFlag && decision);
4289 >    previousCumulativePlotFlag = previousCumulativePlotFlag && plotDecision;
4290 >
4291 >    cumulativeFlags.at(inputType).at(currentCutIndex).push_back(make_pair(previousCumulativeCutFlag,previousCumulativePlotFlag));
4292  
4293    }
4294  
4295   }
4296  
4297  
4298 + template <class InputCollection1, class InputCollection2>
4299 + void OSUAnalysis::setObjectFlags(cut &currentCut, uint currentCutIndex, flagMap &individualFlags, flagMap &cumulativeFlags, \
4300 +                                 InputCollection1 inputCollection1, InputCollection2 inputCollection2, flagPair flags1, flagPair flags2, string inputType){
4301 +
4302 +
4303 +  bool sameObjects = false;
4304 +  if(typeid(InputCollection1).name() == typeid(InputCollection2).name()) sameObjects = true;
4305 +
4306 +  // Get the strings for the two objects that make up the pair.
4307 +  string obj1Type, obj2Type;
4308 +  getTwoObjs(inputType, obj1Type, obj2Type);
4309 +  bool isTwoTypesOfObject = true;
4310 +  if (obj1Type==obj2Type) isTwoTypesOfObject = false;
4311 +
4312 +  // Initialize the flags for individual objects to all be false, if the cut is on the pair.
4313 +  // Set them to true later, if any paired object passes (in which case both of its constituents should pass).
4314 +  if (currentCut.inputCollection == inputType) {
4315 +    for (uint object1 = 0; object1 != inputCollection1->size(); object1++) {
4316 +      individualFlags.at(obj1Type).at(currentCutIndex).push_back(make_pair(false,false));
4317 +      cumulativeFlags.at(obj1Type).at(currentCutIndex).push_back(make_pair(false,false));
4318 +    }
4319 +    if (isTwoTypesOfObject) { // Only initialize the second object if it is different from the first.
4320 +      for (uint object2 = 0; object2 != inputCollection2->size(); object2++)  {
4321 +        individualFlags.at(obj2Type).at(currentCutIndex).push_back(make_pair(false,false));
4322 +        cumulativeFlags.at(obj2Type).at(currentCutIndex).push_back(make_pair(false,false));
4323 +      }
4324 +    }
4325 +  }
4326  
4327 +  int counter = 0;
4328  
4329 +  for (uint object1 = 0; object1 != inputCollection1->size(); object1++){
4330 +    for (uint object2 = 0; object2 != inputCollection2->size(); object2++){
4331  
4332 < DEFINE_FWK_MODULE(OSUAnalysis);
4332 >      if(sameObjects && object1 >= object2) continue;//account for duplicate pairs if both collections are the same
4333 >
4334 >
4335 >      bool cutDecision = true;//object passes if this cut doesn't cut on that type of object
4336 >      bool plotDecision = true;
4337 >
4338 >      if(currentCut.inputCollection == inputType){
4339 >
4340 >        vector<bool> subcutDecisions;
4341 >        for( int subcutIndex = 0; subcutIndex != currentCut.numSubcuts; subcutIndex++){
4342 >          string stringValue = "";
4343 >          double value = valueLookup(&inputCollection1->at(object1), &inputCollection2->at(object2), currentCut.variables.at(subcutIndex), currentCut.functions.at(subcutIndex), stringValue);
4344 >          if (stringValue == "") subcutDecisions.push_back(evaluateComparison(value,currentCut.comparativeOperators.at(subcutIndex),currentCut.cutValues.at(subcutIndex)));
4345 >          else subcutDecisions.push_back(evaluateComparison(stringValue,currentCut.comparativeOperators.at(subcutIndex),currentCut.cutStringValues.at(subcutIndex)));
4346 >        }
4347 >
4348 >        if(currentCut.numSubcuts == 1) cutDecision = subcutDecisions.at(0);
4349 >        else{
4350 >          bool tempDecision = subcutDecisions.at(0);
4351 >          for( int subcutIndex = 1; subcutIndex < currentCut.numSubcuts; subcutIndex++){
4352 >            if(currentCut.logicalOperators.at(subcutIndex-1) == "&" || currentCut.logicalOperators.at(subcutIndex-1) == "&&")
4353 >              tempDecision = tempDecision && subcutDecisions.at(subcutIndex);
4354 >            else if(currentCut.logicalOperators.at(subcutIndex-1) == "|"|| currentCut.logicalOperators.at(subcutIndex-1) == "||")
4355 >              tempDecision = tempDecision || subcutDecisions.at(subcutIndex);
4356 >          }
4357 >          cutDecision = tempDecision;
4358 >        }
4359 >        //invert the cut for plotting if this cut is a veto
4360 >        if(currentCut.isVeto) plotDecision = !cutDecision;
4361 >        else plotDecision = cutDecision;
4362 >      }
4363 >      individualFlags.at(inputType).at(currentCutIndex).push_back(make_pair(cutDecision,plotDecision));
4364 >      if (cutDecision && currentCut.inputCollection == inputType) {  // only set the flags for the individual objects if the pair object is being cut on
4365 >        individualFlags.at(obj1Type).at(currentCutIndex).at(object1).first = true;
4366 >        individualFlags.at(obj2Type).at(currentCutIndex).at(object2).first = true;
4367 >      }
4368 >      if (plotDecision && currentCut.inputCollection == inputType) {  // only set the flags for the individual objects if the pair object is being cut on
4369 >        individualFlags.at(obj1Type).at(currentCutIndex).at(object1).second = true;
4370 >        individualFlags.at(obj2Type).at(currentCutIndex).at(object2).second = true;
4371 >      }
4372 >
4373 >      //set flags for objects that pass this cut AND all the previous cuts
4374 >      bool previousCumulativeCutFlag = true;
4375 >      for(uint previousCutIndex = 0; previousCutIndex != currentCutIndex; previousCutIndex++){
4376 >        if(previousCumulativeCutFlag && individualFlags.at(inputType).at(previousCutIndex).at(counter).first) previousCumulativeCutFlag = true;
4377 >        else{ previousCumulativeCutFlag = false; break;}
4378 >      }
4379 >      previousCumulativeCutFlag = previousCumulativeCutFlag && cutDecision;
4380 >
4381 >      bool previousCumulativePlotFlag = true;
4382 >      for(uint previousCutIndex = 0; previousCutIndex != currentCutIndex; previousCutIndex++){
4383 >        if(previousCumulativePlotFlag && individualFlags.at(inputType).at(previousCutIndex).at(counter).second) previousCumulativePlotFlag = true;
4384 >        else{ previousCumulativePlotFlag = false; break;}
4385 >      }
4386 >      previousCumulativePlotFlag = previousCumulativePlotFlag && plotDecision;
4387 >      
4388 >      //apply flags for the components of the composite object as well
4389 >      bool currentCumulativeCutFlag = true;
4390 >      bool currentCumulativePlotFlag = true;
4391 >
4392 >      if(flags1.size() == 0 && flags2.size() == 0) currentCumulativeCutFlag = previousCumulativeCutFlag;
4393 >      else if(flags1.size() == 0) currentCumulativeCutFlag = previousCumulativeCutFlag && flags2.at(object2).first;
4394 >      else if(flags2.size() == 0) currentCumulativeCutFlag = previousCumulativeCutFlag && flags1.at(object1).first;
4395 >      else currentCumulativeCutFlag = previousCumulativeCutFlag && flags1.at(object1).first && flags2.at(object2).first;
4396 >
4397 >      if(flags1.size() == 0 && flags2.size() == 0) currentCumulativePlotFlag = previousCumulativePlotFlag;
4398 >      else if(flags1.size() == 0) currentCumulativePlotFlag = previousCumulativePlotFlag && flags2.at(object2).second;
4399 >      else if(flags2.size() == 0) currentCumulativePlotFlag = previousCumulativePlotFlag && flags1.at(object1).second;
4400 >      else currentCumulativePlotFlag = previousCumulativePlotFlag && flags1.at(object1).first && flags2.at(object2).second;
4401 >
4402 >      cumulativeFlags.at(inputType).at(currentCutIndex).push_back(make_pair(currentCumulativeCutFlag,currentCumulativePlotFlag));
4403 >
4404 >      if (currentCumulativeCutFlag && currentCut.inputCollection == inputType) {  // only set the flags for the individual objects if the pair object is being cut on
4405 >        cumulativeFlags.at(obj1Type).at(currentCutIndex).at(object1).first = true && getPreviousCumulativeFlags(currentCutIndex, individualFlags, obj1Type, object1, "cut");
4406 >        cumulativeFlags.at(obj2Type).at(currentCutIndex).at(object2).first = true && getPreviousCumulativeFlags(currentCutIndex, individualFlags, obj2Type, object2, "cut");
4407 >      }
4408 >
4409 >      if (currentCumulativePlotFlag && currentCut.inputCollection == inputType) {  // only set the flags for the individual objects if the pair object is being cut on
4410 >        cumulativeFlags.at(obj1Type).at(currentCutIndex).at(object1).second = true && getPreviousCumulativeFlags(currentCutIndex, individualFlags, obj1Type, object1, "plot");
4411 >        cumulativeFlags.at(obj2Type).at(currentCutIndex).at(object2).second = true && getPreviousCumulativeFlags(currentCutIndex, individualFlags, obj2Type, object2, "plot");
4412 >      }
4413 >
4414 >      counter++;
4415 >
4416 >    } // end   for (uint object2 = 0; object2 != inputCollection2->size(); object2++)
4417 >  }  // end   for (uint object1 = 0; object1 != inputCollection1->size(); object1++)
4418 >
4419 > }
4420 >
4421 >
4422 > bool OSUAnalysis::getPreviousCumulativeFlags(uint currentCutIndex, flagMap &individualFlags, string obj1Type, uint object1, string flagType) {
4423 >  // Return true iff for the collection obj1Type, the element with index object1 has individal flags set to true for
4424 >  // all cuts up to currentCutIndex
4425 >  bool previousCumulativeFlag = true;
4426 >  for (uint previousCutIndex = 0; previousCutIndex < currentCutIndex; previousCutIndex++) {
4427 >    bool tempFlag = false;
4428 >    if(flagType == "cut") tempFlag = individualFlags.at(obj1Type).at(previousCutIndex).at(object1).first;
4429 >    else if(flagType == "plot") tempFlag = individualFlags.at(obj1Type).at(previousCutIndex).at(object1).second;
4430 >
4431 >    if (previousCumulativeFlag && tempFlag) previousCumulativeFlag = true;
4432 >    else {
4433 >      previousCumulativeFlag = false; break;
4434 >    }
4435 >  }
4436 >  return previousCumulativeFlag;
4437 > }
4438 >
4439 >
4440 >
4441 >
4442 > template <class InputCollection>
4443 > void OSUAnalysis::assignTreeBranch(BranchSpecs parameters, InputCollection inputCollection, flagPair flags){
4444 >  // This function is similar to fill1DHistogram(), but instead of filling a histogram it assigns a value to a variable for the BNTree
4445 >
4446 >  if (BNTreeBranchVals_.count(parameters.name)==0) clog << "Error[assignTreeBranch]:  trying to assign value to " << parameters.name << " that does not have a branch set up.  Will likely seg fault." << endl;
4447 >  for (uint object = 0; object != inputCollection->size(); object++) {
4448 >
4449 >    if (!plotAllObjectsInPassingEvents_ && !flags.at(object).second) continue;
4450 >
4451 >    string inputVariable = parameters.inputVariable;
4452 >    string function = "";
4453 >    string stringValue = "";
4454 >    double value = valueLookup(&inputCollection->at(object), inputVariable, function, stringValue);
4455 >    BNTreeBranchVals_.at(parameters.name).push_back(value);
4456 >
4457 >  }
4458 > }
4459 >
4460 >
4461 > template <class InputCollection>
4462 > void OSUAnalysis::fill1DHistogram(TH1* histo, histogram parameters, InputCollection inputCollection, flagPair flags, double scaleFactor){
4463 >
4464 >
4465 >  for (uint object = 0; object != inputCollection->size(); object++){
4466 >
4467 >    if(!plotAllObjectsInPassingEvents_ && !flags.at(object).second) continue;
4468 >
4469 >    string currentString = parameters.inputVariables.at(0);
4470 >    string inputVariable = "";
4471 >    string function = "";
4472 >    if(currentString.find("(")==string::npos){
4473 >      inputVariable = currentString;// variable to cut on
4474 >    }
4475 >    else{
4476 >      function = currentString.substr(0,currentString.find("("));//function comes before the "("
4477 >      inputVariable = currentString.substr(currentString.find("(")+1);//get rest of string
4478 >      inputVariable = inputVariable.substr(0,inputVariable.size()-1);//remove trailing ")"
4479 >    }
4480 >
4481 >    string stringValue = "";
4482 >    double value = valueLookup(&inputCollection->at(object), inputVariable, function, stringValue);
4483 >    histo->Fill(value,scaleFactor);
4484 >
4485 >    if (printEventInfo_) {
4486 >      // Write information about event to screen, for testing purposes.
4487 >      clog << "  Info for event:  value for histogram " << histo->GetName() << ":  " << value << endl;
4488 >    }
4489 >
4490 >  }
4491 > }
4492 >
4493 > template <class InputCollection1, class InputCollection2>
4494 > void OSUAnalysis::fill1DHistogram(TH1* histo, histogram parameters, InputCollection1 inputCollection1, InputCollection2 inputCollection2, flagPair flags1, flagPair flags2, flagPair pairFlags, double scaleFactor){
4495 >
4496 >  bool sameObjects = false;
4497 >  if(typeid(InputCollection1).name() == typeid(InputCollection2).name()) sameObjects = true;
4498 >
4499 >  int pairCounter = -1;
4500 >  for (uint object1 = 0; object1 != inputCollection1->size(); object1++){
4501 >    for (uint object2 = 0; object2 != inputCollection2->size(); object2++){
4502 >
4503 >      if(sameObjects && object1 >= object2) continue;//account for duplicate pairs if both collections are the same
4504 >
4505 >      pairCounter++;
4506 >      //only take objects which have passed all cuts and pairs which have passed all cuts
4507 >      if(!plotAllObjectsInPassingEvents_ && !flags1.at(object1).second) continue;
4508 >      if(!plotAllObjectsInPassingEvents_ && !flags2.at(object2).second) continue;
4509 >      if(!plotAllObjectsInPassingEvents_ && !pairFlags.at(pairCounter).second) continue;
4510 >
4511 >      string currentString = parameters.inputVariables.at(0);
4512 >      string inputVariable = "";
4513 >      string function = "";
4514 >      if(currentString.find("(")==string::npos){
4515 >        inputVariable = currentString;// variable to cut on
4516 >      }
4517 >      else{
4518 >        function = currentString.substr(0,currentString.find("("));//function comes before the "("
4519 >        inputVariable = currentString.substr(currentString.find("(")+1);//get rest of string
4520 >        inputVariable = inputVariable.substr(0,inputVariable.size()-1);//remove trailing ")"
4521 >      }
4522 >
4523 >      string stringValue = "";
4524 >      double value = valueLookup(&inputCollection1->at(object1), &inputCollection2->at(object2), inputVariable, function, stringValue);
4525 >      histo->Fill(value,scaleFactor);
4526 >
4527 >    }
4528 >  }
4529 >
4530 > }
4531 >
4532 >
4533 > template <class InputCollection>
4534 > void OSUAnalysis::fill2DHistogram(TH2* histo, histogram parameters, InputCollection inputCollection, flagPair flags, double scaleFactor){
4535 >
4536 >  for (uint object = 0; object != inputCollection->size(); object++){
4537 >
4538 >    if(!plotAllObjectsInPassingEvents_ && !flags.at(object).second) continue;
4539 >
4540 >    string stringValue = "";
4541 >    string currentString = parameters.inputVariables.at(0);
4542 >    string inputVariable = "";
4543 >    string function = "";
4544 >    if(currentString.find("(")==string::npos){
4545 >      inputVariable = currentString;// variable to cut on
4546 >    }
4547 >    else{
4548 >      function = currentString.substr(0,currentString.find("("));//function comes before the "("
4549 >      inputVariable = currentString.substr(currentString.find("(")+1);//get rest of string
4550 >      inputVariable = inputVariable.substr(0,inputVariable.size()-1);//remove trailing ")"
4551 >    }
4552 >    double valueX = valueLookup(&inputCollection->at(object), inputVariable, function, stringValue);
4553 >
4554 >    currentString = parameters.inputVariables.at(1);
4555 >    inputVariable = "";
4556 >    function = "";
4557 >    if(currentString.find("(")==string::npos){
4558 >      inputVariable = currentString;// variable to cut on
4559 >    }
4560 >    else{
4561 >      function = currentString.substr(0,currentString.find("("));//function comes before the "("
4562 >      inputVariable = currentString.substr(currentString.find("(")+1);//get rest of string
4563 >      inputVariable = inputVariable.substr(0,inputVariable.size()-1);//remove trailing ")"
4564 >    }
4565 >
4566 >    double valueY = valueLookup(&inputCollection->at(object), inputVariable, function, stringValue);
4567 >
4568 >    histo->Fill(valueX,valueY,scaleFactor);
4569 >
4570 >  }
4571 >
4572 > }
4573 >
4574 > template <class InputCollection1, class InputCollection2>
4575 > void OSUAnalysis::fill2DHistogram(TH2* histo, histogram parameters, InputCollection1 inputCollection1, InputCollection2 inputCollection2, flagPair flags1, flagPair flags2, flagPair pairFlags, double scaleFactor){
4576 >
4577 >  bool sameObjects = false;
4578 >  if(typeid(InputCollection1).name() == typeid(InputCollection2).name()) sameObjects = true;
4579 >
4580 >  int pairCounter = -1;
4581 >  for (uint object1 = 0; object1 != inputCollection1->size(); object1++){
4582 >    for (uint object2 = 0; object2 != inputCollection2->size(); object2++){
4583 >
4584 >      if(sameObjects && object1 >= object2) continue;//account for duplicate pairs if both collections are the same
4585 >
4586 >      pairCounter++;
4587 >
4588 >      //only take objects which have passed all cuts and pairs which have passed all cuts
4589 >      if(!plotAllObjectsInPassingEvents_ && !flags1.at(object1).second) continue;
4590 >      if(!plotAllObjectsInPassingEvents_ && !flags2.at(object2).second) continue;
4591 >      if(!plotAllObjectsInPassingEvents_ && !pairFlags.at(pairCounter).second) continue;
4592 >
4593 >      string stringValue = "";
4594 >      string currentString = parameters.inputVariables.at(0);
4595 >      string inputVariable = "";
4596 >      string function = "";
4597 >      if(currentString.find("(")==string::npos){
4598 >        inputVariable = currentString;// variable to cut on
4599 >      }
4600 >      else{
4601 >        function = currentString.substr(0,currentString.find("("));//function comes before the "("
4602 >        inputVariable = currentString.substr(currentString.find("(")+1);//get rest of string
4603 >        inputVariable = inputVariable.substr(0,inputVariable.size()-1);//remove trailing ")"
4604 >      }
4605 >      double valueX = valueLookup(&inputCollection1->at(object1), &inputCollection2->at(object2), inputVariable, function, stringValue);
4606 >
4607 >      currentString = parameters.inputVariables.at(1);
4608 >      inputVariable = "";
4609 >      function = "";
4610 >      if(currentString.find("(")==string::npos){
4611 >        inputVariable = currentString;// variable to cut on
4612 >      }
4613 >      else{
4614 >        function = currentString.substr(0,currentString.find("("));//function comes before the "("
4615 >        inputVariable = currentString.substr(currentString.find("(")+1);//get rest of string
4616 >        inputVariable = inputVariable.substr(0,inputVariable.size()-1);//remove trailing ")"
4617 >      }
4618 >      double valueY = valueLookup(&inputCollection1->at(object1), &inputCollection2->at(object2), inputVariable, function, stringValue);
4619 >
4620 >
4621 >      histo->Fill(valueX,valueY,scaleFactor);
4622 >
4623 >    }
4624 >  }
4625 >
4626 > }
4627 >
4628 >
4629 > template <class InputObject>
4630 > int OSUAnalysis::getGenMatchedParticleIndex(InputObject object){
4631 >
4632 >  int bestMatchIndex = -1;
4633 >  double bestMatchDeltaR = 999;
4634 >
4635 >  for(BNmcparticleCollection::const_iterator mcparticle = mcparticles->begin (); mcparticle != mcparticles->end (); mcparticle++){
4636 >
4637 >    double currentDeltaR = deltaR(object->eta,object->phi,mcparticle->eta,mcparticle->phi);
4638 >    if(currentDeltaR > 0.05) continue;
4639 >    //     clog << setprecision(3) << setw(20)
4640 >    //          << "\tcurrentParticle:  eta = " << mcparticles->at(mcparticle - mcparticles->begin()).eta
4641 >    //          << setw(20)
4642 >    //          << "\tphi = " << mcparticles->at(mcparticle - mcparticles->begin()).phi
4643 >    //          << setw(20)
4644 >    //          << "\tdeltaR = " << currentDeltaR
4645 >    //          << setprecision(1)
4646 >    //          << setw(20)
4647 >    //          << "\tid = " << mcparticles->at(mcparticle - mcparticles->begin()).id
4648 >    //          << setw(20)
4649 >    //          << "\tmotherId = " << mcparticles->at(mcparticle - mcparticles->begin()).motherId
4650 >    //          << setw(20)
4651 >    //          << "\tstatus = " << mcparticles->at(mcparticle - mcparticles->begin()).status<< endl;
4652 >    if(currentDeltaR < bestMatchDeltaR && mcparticles->at(mcparticle - mcparticles->begin()).id != mcparticles->at(mcparticle - mcparticles->begin()).motherId){
4653 >      bestMatchIndex = mcparticle - mcparticles->begin();
4654 >      bestMatchDeltaR = currentDeltaR;
4655 >    }
4656 >
4657 >  }
4658 >  //   if(bestMatchDeltaR != 999)  clog << "bestMatch:  deltaR = " << bestMatchDeltaR << "   id = " << mcparticles->at(bestMatchIndex).id << "   motherId = " << mcparticles->at(bestMatchIndex).motherId << endl;
4659 >  //   else clog << "no match found..." << endl;
4660 >  return bestMatchIndex;
4661 >
4662 > }
4663 >
4664 >
4665 > int OSUAnalysis::findTauMotherIndex(const BNmcparticle* tau){
4666 >
4667 >  int bestMatchIndex = -1;
4668 >  double bestMatchDeltaR = 999;
4669 >
4670 >  for(BNmcparticleCollection::const_iterator mcparticle = mcparticles->begin (); mcparticle != mcparticles->end (); mcparticle++){
4671 >
4672 >    if(fabs(mcparticle->id) != 15 || mcparticle->status !=3) continue;
4673 >
4674 >    double currentDeltaR = deltaR(tau->eta,tau->phi,mcparticle->eta,mcparticle->phi);
4675 >    if(currentDeltaR > 0.05) continue;
4676 >
4677 >    if(currentDeltaR < bestMatchDeltaR && mcparticles->at(mcparticle - mcparticles->begin()).id != mcparticles->at(mcparticle - mcparticles->begin()).motherId){
4678 >      bestMatchIndex = mcparticle - mcparticles->begin();
4679 >      bestMatchDeltaR = currentDeltaR;
4680 >    }
4681 >
4682 >  }
4683 >
4684 >  return bestMatchIndex;
4685 > }
4686 >
4687 >
4688 > // bin      particle type
4689 > // ---      -------------
4690 > //  0        unmatched
4691 > //  1        u
4692 > //  2        d
4693 > //  3        s
4694 > //  4        c
4695 > //  5        b
4696 > //  6        t
4697 > //  7        e
4698 > //  8        mu
4699 > //  9        tau
4700 > // 10        nu
4701 > // 11        g
4702 > // 12        gamma
4703 > // 13        Z
4704 > // 14        W
4705 > // 15        light meson
4706 > // 16        K meson
4707 > // 17        D meson
4708 > // 18        B meson
4709 > // 19        light baryon
4710 > // 20        strange baryon
4711 > // 21        charm baryon
4712 > // 22        bottom baryon
4713 > // 23        QCD string
4714 > // 24        other
4715 >
4716 > int OSUAnalysis::getPdgIdBinValue(int pdgId){
4717 >
4718 >  int binValue = -999;
4719 >  int absPdgId = fabs(pdgId);
4720 >  if(pdgId == -1) binValue = 0;
4721 >  else if(absPdgId <= 6 ) binValue = absPdgId;
4722 >  else if(absPdgId == 11 ) binValue = 7;
4723 >  else if(absPdgId == 13 ) binValue = 8;
4724 >  else if(absPdgId == 15 ) binValue = 9;
4725 >  else if(absPdgId == 12 || absPdgId == 14 || absPdgId == 16 ) binValue = 10;
4726 >  else if(absPdgId == 21 ) binValue = 11;
4727 >  else if(absPdgId == 22 ) binValue = 12;
4728 >  else if(absPdgId == 23 ) binValue = 13;
4729 >  else if(absPdgId == 24 ) binValue = 14;
4730 >  else if(absPdgId > 100 && absPdgId < 300 && absPdgId != 130  ) binValue = 15;
4731 >  else if( absPdgId == 130 || (absPdgId > 300 && absPdgId < 400)  ) binValue = 16;
4732 >  else if(absPdgId > 400 && absPdgId < 500  ) binValue = 17;
4733 >  else if(absPdgId > 500 && absPdgId < 600  ) binValue = 18;
4734 >  else if(absPdgId > 1000 && absPdgId < 3000  ) binValue = 19;
4735 >  else if(absPdgId > 3000 && absPdgId < 4000  ) binValue = 20;
4736 >  else if(absPdgId > 4000 && absPdgId < 5000  ) binValue = 21;
4737 >  else if(absPdgId > 5000 && absPdgId < 6000  ) binValue = 22;
4738 >  else if(absPdgId == 92  ) binValue = 23;
4739 >
4740 >  else binValue = 24;
4741 >
4742 >  return binValue;
4743 >
4744 > }
4745 >
4746 > const BNprimaryvertex *
4747 > OSUAnalysis::chosenVertex ()
4748 > {
4749 >  const BNprimaryvertex *chosenVertex = 0;
4750 >  if(cumulativeFlags.find ("primaryvertexs") != cumulativeFlags.end ()){
4751 >    flagPair vertexFlags;
4752 >    for (int i = cumulativeFlags.at("primaryvertexs").size() - 1; i >= 0; i--){
4753 >      if (cumulativeFlags.at("primaryvertexs").at(i).size()){
4754 >        vertexFlags = cumulativeFlags.at("primaryvertexs").at(i);
4755 >        break;
4756 >      }
4757 >    }
4758 >    for (uint vertexIndex = 0; vertexIndex != vertexFlags.size(); vertexIndex++){
4759 >      if(!vertexFlags.at(vertexIndex).first) continue;
4760 >      chosenVertex = & primaryvertexs->at(vertexIndex);
4761 >      break;
4762 >    }
4763 >  }
4764 >  else if (find (objectsToGet.begin (), objectsToGet.end (), "primaryvertexs") != objectsToGet.end ())
4765 >    chosenVertex = & primaryvertexs->at (0);
4766 >
4767 >  return chosenVertex;
4768 > }
4769  
4770 + const BNmet *
4771 + OSUAnalysis::chosenMET ()
4772 + {
4773 +  const BNmet *chosenMET = 0;
4774 +  if(cumulativeFlags.find ("mets") != cumulativeFlags.end ()){
4775 +    flagPair metFlags;
4776 +    for (int i = cumulativeFlags.at("mets").size() - 1; i >= 0; i--){
4777 +      if (cumulativeFlags.at("mets").at(i).size()){
4778 +        metFlags = cumulativeFlags.at("mets").at(i);
4779 +        break;
4780 +      }
4781 +    }
4782 +    for (uint metIndex = 0; metIndex != metFlags.size(); metIndex++){
4783 +      if(!metFlags.at(metIndex).first) continue;
4784 +      chosenMET = & mets->at(metIndex);
4785 +      break;
4786 +    }
4787 +  }
4788 +  else if (find (objectsToGet.begin (), objectsToGet.end (), "mets") != objectsToGet.end ())
4789 +    chosenMET = & mets->at (0);
4790 +
4791 +  return chosenMET;
4792 + }
4793 +
4794 + const BNelectron *
4795 + OSUAnalysis::chosenElectron ()
4796 + {
4797 +  const BNelectron *chosenElectron = 0;
4798 +  if(cumulativeFlags.find ("electrons") != cumulativeFlags.end ()){
4799 +    flagPair electronFlags;
4800 +    for (int i = cumulativeFlags.at("electrons").size() - 1; i >= 0; i--){
4801 +      if (cumulativeFlags.at("electrons").at(i).size()){
4802 +        electronFlags = cumulativeFlags.at("electrons").at(i);
4803 +        break;
4804 +      }
4805 +    }
4806 +    for (uint electronIndex = 0; electronIndex != electronFlags.size(); electronIndex++){
4807 +      if(!electronFlags.at(electronIndex).first) continue;
4808 +      chosenElectron = & electrons->at(electronIndex);
4809 +      break;
4810 +    }
4811 +  }
4812 +  else if (find (objectsToGet.begin (), objectsToGet.end (), "electrons") != objectsToGet.end ())
4813 +    chosenElectron = & electrons->at (0);
4814 +
4815 +  return chosenElectron;
4816 + }
4817 +
4818 +
4819 + const BNmuon *
4820 + OSUAnalysis::chosenMuon ()
4821 + {
4822 +  const BNmuon *chosenMuon = 0;
4823 +  if(cumulativeFlags.find ("muons") != cumulativeFlags.end ()){
4824 +    flagPair muonFlags;
4825 +    for (int i = cumulativeFlags.at("muons").size() - 1; i >= 0; i--){
4826 +      if (cumulativeFlags.at("muons").at(i).size()){
4827 +        muonFlags = cumulativeFlags.at("muons").at(i);
4828 +        break;
4829 +      }
4830 +    }
4831 +    for (uint muonIndex = 0; muonIndex != muonFlags.size(); muonIndex++){
4832 +      if(!muonFlags.at(muonIndex).first) continue;
4833 +      chosenMuon = & muons->at(muonIndex);
4834 +      break;
4835 +    }
4836 +  }
4837 +  else if (find (objectsToGet.begin (), objectsToGet.end (), "muons") != objectsToGet.end ())
4838 +    chosenMuon = & muons->at (0);
4839 +
4840 +  return chosenMuon;
4841 + }
4842 +
4843 + double
4844 + OSUAnalysis::chosenHT ()
4845 + {
4846 +  double chosenHT = 0.0;
4847 +  if(cumulativeFlags.find ("jets") != cumulativeFlags.end ()){
4848 +    flagPair jetFlags;
4849 +    for (int i = cumulativeFlags.at("jets").size() - 1; i >= 0; i--){
4850 +      if (cumulativeFlags.at("jets").at(i).size()){
4851 +        jetFlags = cumulativeFlags.at("jets").at(i);
4852 +        break;
4853 +      }
4854 +    }
4855 +    for (uint jetIndex = 0; jetIndex != jetFlags.size(); jetIndex++){
4856 +      if(!jetFlags.at(jetIndex).first) continue;
4857 +      chosenHT += jets->at(jetIndex).pt;
4858 +    }
4859 +  }
4860 +
4861 +  return chosenHT;
4862 + }
4863 +
4864 + pair<const BNmuon *, const BNmuon *>
4865 + OSUAnalysis::leadMuonPair ()
4866 + {
4867 +  pair<const BNmuon *, const BNmuon *> leadMuonPair;
4868 +  leadMuonPair.first = leadMuonPair.second = 0;
4869  
4870 +  if(cumulativeFlags.find ("muons") != cumulativeFlags.end ()){
4871 +    flagPair muonFlags;
4872 +    for (int i = cumulativeFlags.at("muons").size() - 1; i >= 0; i--){
4873 +      if (cumulativeFlags.at("muons").at(i).size()){
4874 +        muonFlags = cumulativeFlags.at("muons").at(i);
4875 +        break;
4876 +      }
4877 +    }
4878 +    for (uint muonIndex0 = 0; muonIndex0 != muonFlags.size(); muonIndex0++){
4879 +      if(!muonFlags.at(muonIndex0).first) continue;
4880 +      for (uint muonIndex1 = muonIndex0 + 1; muonIndex1 < muonFlags.size(); muonIndex1++){
4881 +        if(!muonFlags.at(muonIndex1).first) continue;
4882 +        const BNmuon *mu0 = & muons->at(muonIndex0);
4883 +        const BNmuon *mu1 = & muons->at(muonIndex1);
4884 +        if(leadMuonPair.first == 0 || leadMuonPair.second == 0){
4885 +          leadMuonPair.first = mu0;
4886 +          leadMuonPair.second = mu1;
4887 +        }
4888 +        else{
4889 +          TVector2 newPt0 (mu0->px, mu0->py),
4890 +                   newPt1 (mu1->px, mu1->py),
4891 +                   oldPt0 (leadMuonPair.first->px, leadMuonPair.first->py),
4892 +                   oldPt1 (leadMuonPair.second->px, leadMuonPair.second->py);
4893 +          if(newPt0.Mod () + newPt1.Mod () > oldPt0.Mod() + oldPt1.Mod ())
4894 +            {
4895 +              leadMuonPair.first = mu0;
4896 +              leadMuonPair.second = mu1;
4897 +            }
4898 +        }
4899 +      }
4900 +    }
4901 +  }
4902 +
4903 +  return leadMuonPair;
4904 + }
4905 +
4906 + pair<const BNelectron *, const BNelectron *>
4907 + OSUAnalysis::leadElectronPair ()
4908 + {
4909 +  pair<const BNelectron *, const BNelectron *> leadElectronPair;
4910 +  leadElectronPair.first = leadElectronPair.second = 0;
4911 +  if(cumulativeFlags.find ("electrons") != cumulativeFlags.end ()){
4912 +    flagPair electronFlags;
4913 +    for (int i = cumulativeFlags.at("electrons").size() - 1; i >= 0; i--){
4914 +      if (cumulativeFlags.at("electrons").at(i).size()){
4915 +        electronFlags = cumulativeFlags.at("electrons").at(i);
4916 +        break;
4917 +      }
4918 +    }
4919 +    for (uint electronIndex0 = 0; electronIndex0 != electronFlags.size(); electronIndex0++){
4920 +      if(!electronFlags.at(electronIndex0).first) continue;
4921 +      for (uint electronIndex1 = electronIndex0 + 1; electronIndex1 < electronFlags.size(); electronIndex1++){
4922 +        if(!electronFlags.at(electronIndex1).first) continue;
4923 +        const BNelectron *el0 = & electrons->at(electronIndex0);
4924 +        const BNelectron *el1 = & electrons->at(electronIndex1);
4925 +        if(leadElectronPair.first == 0 || leadElectronPair.second == 0){
4926 +          leadElectronPair.first = el0;
4927 +          leadElectronPair.second = el1;
4928 +        }
4929 +        else{
4930 +          TVector2 newPt0 (el0->px, el0->py),
4931 +                   newPt1 (el1->px, el1->py),
4932 +                   oldPt0 (leadElectronPair.first->px, leadElectronPair.first->py),
4933 +                   oldPt1 (leadElectronPair.second->px, leadElectronPair.second->py);
4934 +          if(newPt0.Mod () + newPt1.Mod () > oldPt0.Mod() + oldPt1.Mod ())
4935 +            {
4936 +              leadElectronPair.first = el0;
4937 +              leadElectronPair.second = el1;
4938 +            }
4939 +        }
4940 +      }
4941 +    }
4942 +  }
4943 +
4944 +  return leadElectronPair;
4945 + }
4946 +
4947 + DEFINE_FWK_MODULE(OSUAnalysis);

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