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Comparing UserCode/OSUT3Analysis/AnaTools/plugins/OSUAnalysis.cc (file contents):
Revision 1.83 by biliu, Wed Jun 5 03:18:56 2013 UTC vs.
Revision 1.103 by wulsin, Mon Jul 22 15:27:58 2013 UTC

# Line 1 | Line 1
1   #include "OSUT3Analysis/AnaTools/plugins/OSUAnalysis.h"
2 –
2   OSUAnalysis::OSUAnalysis (const edm::ParameterSet &cfg) :
3    // Retrieve parameters from the configuration file.
4    jets_ (cfg.getParameter<edm::InputTag> ("jets")),
# Line 28 | Line 27 | OSUAnalysis::OSUAnalysis (const edm::Par
27    datasetType_ (cfg.getParameter<string> ("datasetType")),
28    channels_  (cfg.getParameter<vector<edm::ParameterSet> >("channels")),
29    histogramSets_ (cfg.getParameter<vector<edm::ParameterSet> >("histogramSets")),
30 +  useEDMFormat_   (cfg.getParameter<bool>("useEDMFormat")),
31    treeBranchSets_   (cfg.getParameter<vector<edm::ParameterSet> >("treeBranchSets")),
32    plotAllObjectsInPassingEvents_ (cfg.getParameter<bool> ("plotAllObjectsInPassingEvents")),
33    doPileupReweighting_ (cfg.getParameter<bool> ("doPileupReweighting")),
34    applyLeptonSF_ (cfg.getParameter<bool> ("applyLeptonSF")),
35    applyBtagSF_ (cfg.getParameter<bool> ("applyBtagSF")),
36    minBtag_ (cfg.getParameter<int> ("minBtag")),
37 –  maxBtag_ (cfg.getParameter<int> ("maxBtag")),
37    printEventInfo_      (cfg.getParameter<bool> ("printEventInfo")),
38    printAllTriggers_    (cfg.getParameter<bool> ("printAllTriggers")),
39    useTrackCaloRhoCorr_ (cfg.getParameter<bool> ("useTrackCaloRhoCorr")),
# Line 66 | Line 65 | OSUAnalysis::OSUAnalysis (const edm::Par
65    //always get vertex collection so we can assign the primary vertex in the event
66    objectsToGet.push_back("primaryvertexs");
67    objectsToPlot.push_back("primaryvertexs");
68 <  objectsToCut.push_back("primaryvertexs");
68 >  objectsToFlag.push_back("primaryvertexs");
69  
70  
71    //always get the MC particles to do GEN-matching
# Line 76 | Line 75 | OSUAnalysis::OSUAnalysis (const edm::Par
75    objectsToGet.push_back("events");
76  
77  
78 <  // Parse the tree variable definitions.    
79 <  for (uint iBranchSet = 0; iBranchSet<treeBranchSets_.size(); iBranchSet++) {
78 >  // Parse the tree variable definitions.
79 >  for (uint iBranchSet = 0; !useEDMFormat_ && iBranchSet<treeBranchSets_.size(); iBranchSet++) {
80      string tempInputCollection = treeBranchSets_.at(iBranchSet).getParameter<string> ("inputCollection");
81 <    if(tempInputCollection.find("pairs")!=string::npos) { cout << "Warning:  tree filling is not configured for pairs of objects, so will not work for collection: " << tempInputCollection << endl; }  
81 >    if(tempInputCollection.find("pairs")!=string::npos) { clog << "Warning:  tree filling is not configured for pairs of objects, so will not work for collection: " << tempInputCollection << endl; }
82      objectsToGet.push_back(tempInputCollection);
83 <    objectsToCut.push_back(tempInputCollection);
83 >    objectsToFlag.push_back(tempInputCollection);
84  
85      vector<string> branchList(treeBranchSets_.at(iBranchSet).getParameter<vector<string> >("branches"));
86  
87      for (uint iBranch = 0; iBranch<branchList.size(); iBranch++) {
88        BranchSpecs br;
89        br.inputCollection = tempInputCollection;
90 <      br.inputVariable = branchList.at(iBranch);  
91 <      TString newName = TString(br.inputCollection) + "_" + TString(br.inputVariable);  
92 <      br.name = string(newName.Data());  
90 >      br.inputVariable = branchList.at(iBranch);
91 >      TString newName = TString(br.inputCollection) + "_" + TString(br.inputVariable);
92 >      br.name = string(newName.Data());
93        treeBranches_.push_back(br);
94 <    }  
94 >    }
95  
96 <  } // end   for (uint iBranchSet = 0; iBranchSet<treeBranchSets_.size(); iBranchSet++) {
96 >  } // end   for (uint iBranchSet = 0; iBranchSet<treeBranchSets_.size(); iBranchSet++)
97  
98  
99    //parse the histogram definitions
# Line 102 | Line 101 | OSUAnalysis::OSUAnalysis (const edm::Par
101  
102      string tempInputCollection = histogramSets_.at(currentHistogramSet).getParameter<string> ("inputCollection");
103      if(tempInputCollection == "muon-electron pairs") tempInputCollection = "electron-muon pairs";
104 +    if(tempInputCollection == "photon-muon pairs") tempInputCollection = "muon-photon pairs";
105 +    if(tempInputCollection == "photon-electron pairs") tempInputCollection = "electron-photon pairs";
106      if(tempInputCollection == "jet-electron pairs") tempInputCollection = "electron-jet pairs";
107 +    if(tempInputCollection == "jet-photon pairs") tempInputCollection = "photon-jet pairs";
108      if(tempInputCollection == "jet-muon pairs") tempInputCollection = "muon-jet pairs";
109 +    if(tempInputCollection == "event-muon pairs") tempInputCollection = "muon-event pairs";
110 +    if(tempInputCollection == "jet-met pairs")  tempInputCollection = "met-jet pairs";
111 +    if(tempInputCollection == "track-jet pairs")  tempInputCollection = "track-jet pairs";
112      if(tempInputCollection == "event-track pairs")   tempInputCollection = "track-event pairs";
113      if(tempInputCollection == "secondary muon-muon pairs")   tempInputCollection = "muon-secondary muon pairs";
114 +    if(tempInputCollection == "secondary jet-muon pairs")   tempInputCollection = "muon-secondary jet pairs";
115 +    if(tempInputCollection == "secondary photon-muon pairs")   tempInputCollection = "muon-secondary photon pairs";
116 +    if(tempInputCollection == "secondary jet-electron pairs")   tempInputCollection = "electron-secondary jet pairs";
117 +    if(tempInputCollection == "secondary jet-photon pairs")   tempInputCollection = "photon-secondary jet pairs";
118 +    if(tempInputCollection == "secondary jet-jet pairs")   tempInputCollection = "jet-secondary jet pairs";
119      if(tempInputCollection == "secondary electron-electron pairs")   tempInputCollection = "electron-secondary electron pairs";
120      if(tempInputCollection == "trigobj-electron pairs")   tempInputCollection = "electron-trigobj pairs";
121      if(tempInputCollection == "trigobj-muon pairs")   tempInputCollection = "muon-trigobj pairs";
# Line 119 | Line 129 | OSUAnalysis::OSUAnalysis (const edm::Par
129          objectsToGet.push_back(tempInputCollection);
130        }
131        objectsToPlot.push_back(tempInputCollection);
132 <      objectsToCut.push_back(tempInputCollection);
132 >      objectsToFlag.push_back(tempInputCollection);
133      } else { //pair of objects, need to add the pair and the individual objects to the lists of things to Get/Plot/Cut
134        string obj1;
135        string obj2;
136        getTwoObjs(tempInputCollection, obj1, obj2);
137        string obj2ToGet = getObjToGet(obj2);
138 <      objectsToCut.push_back(tempInputCollection);
139 <      objectsToCut.push_back(obj1);
140 <      objectsToCut.push_back(obj2);
138 >      objectsToFlag.push_back(tempInputCollection);
139 >      objectsToFlag.push_back(obj1);
140 >      objectsToFlag.push_back(obj2);
141        objectsToPlot.push_back(tempInputCollection);
142        objectsToPlot.push_back(obj1);
143        objectsToPlot.push_back(obj2);
144        objectsToGet.push_back(tempInputCollection);
145        objectsToGet.push_back(obj1);
146        objectsToGet.push_back(obj2ToGet);
147 <    } // end else
148 <
147 >    } // end else
148 >      if (find(objectsToPlot.begin(), objectsToPlot.end(), "events") != objectsToPlot.end())
149 >        objectsToGet.push_back("jets");
150  
151  
152      vector<edm::ParameterSet> histogramList_  (histogramSets_.at(currentHistogramSet).getParameter<vector<edm::ParameterSet> >("histograms"));
# Line 157 | Line 168 | OSUAnalysis::OSUAnalysis (const edm::Par
168        histograms.push_back(tempHistogram);
169  
170      }
171 <  } //   for(uint currentHistogramSet = 0; currentHistogramSet != histogramSets_.size(); currentHistogramSet++){
171 >  } //   for(uint currentHistogramSet = 0; currentHistogramSet != histogramSets_.size(); currentHistogramSet++)
172  
173    //make unique vector of objects we need to plot (so we can book a histogram with the number of each object)
174    sort( objectsToPlot.begin(), objectsToPlot.end() );
# Line 169 | Line 180 | OSUAnalysis::OSUAnalysis (const edm::Par
180    for(uint currentObjectIndex = 0; currentObjectIndex != objectsToPlot.size(); currentObjectIndex++){
181  
182      string currentObject = objectsToPlot.at(currentObjectIndex);
183 <    if(currentObject != "muons" && currentObject != "secondary muons" && currentObject != "secondary electrons" && currentObject != "electrons" && currentObject != "taus" && currentObject != "tracks" && currentObject != "photons" && currentObject != "superclusters") continue;
183 >    if(currentObject != "muons" && currentObject != "secondary muons" && currentObject != "secondary electrons" && currentObject != "electrons" && currentObject != "taus" && currentObject != "tracks" && currentObject != "photons" && currentObject != "secondary photons"&& currentObject != "superclusters") continue;
184  
185      histogram tempIdHisto;
186      histogram tempMomIdHisto;
# Line 184 | Line 195 | OSUAnalysis::OSUAnalysis (const edm::Par
195      tempIdVsGmaIdHisto.inputCollection = currentObject;
196  
197      if(currentObject == "secondary muons") currentObject = "secondaryMuons";
198 +    if(currentObject == "secondary photons") currentObject = "secondaryPhotons";
199      if(currentObject == "secondary electrons") currentObject = "secondaryElectrons";
200  
201      currentObject = currentObject.substr(0, currentObject.size()-1);
# Line 266 | Line 278 | OSUAnalysis::OSUAnalysis (const edm::Par
278      //create cutFlow for this channel
279      cutFlows_.push_back (new CutFlow (fs_, channelName));
280      vector<TFileDirectory> directories; //vector of directories in the output file.
281 +    vector<TFileDirectory> treeDirectories; //vector of directories for trees in the output file.
282      vector<string> subSubDirNames;//subdirectories in each channel.
283      //get list of cuts for this channel
284      vector<edm::ParameterSet> cuts_  (channels_.at(currentChannel).getParameter<vector<edm::ParameterSet> >("cuts"));
# Line 277 | Line 290 | OSUAnalysis::OSUAnalysis (const edm::Par
290        //store input collection for cut
291        string tempInputCollection = cuts_.at(currentCut).getParameter<string> ("inputCollection");
292        if(tempInputCollection == "muon-electron pairs") tempInputCollection = "electron-muon pairs";
293 +      if(tempInputCollection == "photon-electron pairs") tempInputCollection = "electron-photon pairs";
294 +      if(tempInputCollection == "photon-muon pairs") tempInputCollection = "muon-photon pairs";
295        if(tempInputCollection == "jet-electron pairs") tempInputCollection = "electron-jet pairs";
296        if(tempInputCollection == "jet-muon pairs") tempInputCollection = "muon-jet pairs";
297 +      if(tempInputCollection == "event-muon pairs") tempInputCollection = "muon-event pairs";
298 +      if(tempInputCollection == "jet-met pairs")  tempInputCollection = "met-jet pairs";
299 +      if(tempInputCollection == "track-jet pairs")  tempInputCollection = "track-jet pairs";
300 +      if(tempInputCollection == "jet-photon pairs") tempInputCollection = "photon-jet pairs";
301        if(tempInputCollection == "event-track pairs")   tempInputCollection = "track-event pairs";
302        if(tempInputCollection == "secondary muon-muon pairs")   tempInputCollection = "muon-secondary muon pairs";
303 +      if(tempInputCollection == "secondary jet-jet pairs")   tempInputCollection = "jet-secondary jet pairs";
304 +      if(tempInputCollection == "secondary jet-muon pairs")   tempInputCollection = "muon-secondary jet pairs";
305 +      if(tempInputCollection == "secondary photon-muon pairs")   tempInputCollection = "muon-secondary photon pairs";
306 +      if(tempInputCollection == "secondary jet-photon pairs")   tempInputCollection = "photon-secondary jet pairs";
307 +      if(tempInputCollection == "secondary jet-electron pairs")   tempInputCollection = "electron-secondary jet pairs";
308        if(tempInputCollection == "secondary electron-electron pairs")   tempInputCollection = "electron-secondary electron pairs";
309        if(tempInputCollection == "trigobj-electron pairs")   tempInputCollection = "electron-trigobj pairs";
310        if(tempInputCollection == "trigobj-muon pairs")   tempInputCollection = "muon-trigobj pairs";
# Line 295 | Line 319 | OSUAnalysis::OSUAnalysis (const edm::Par
319            objectsToGet.push_back(tempInputCollection);
320          }
321          objectsToCut.push_back(tempInputCollection);
322 +        objectsToFlag.push_back(tempInputCollection);
323        }
324        else{//pair of objects, need to add them both to objectsToGet
325          string obj1;
# Line 304 | Line 329 | OSUAnalysis::OSUAnalysis (const edm::Par
329          objectsToCut.push_back(tempInputCollection);
330          objectsToCut.push_back(obj1);
331          objectsToCut.push_back(obj2);
332 +        objectsToFlag.push_back(tempInputCollection);
333 +        objectsToFlag.push_back(obj1);
334 +        objectsToFlag.push_back(obj2);
335          objectsToGet.push_back(tempInputCollection);
336          objectsToGet.push_back(obj1);
337          objectsToGet.push_back(obj2ToGet);
# Line 316 | Line 344 | OSUAnalysis::OSUAnalysis (const edm::Par
344        string cutString = cuts_.at(currentCut).getParameter<string> ("cutString");
345        vector<string> cutStringVector = splitString(cutString);
346        if(cutStringVector.size()!=3 && cutStringVector.size() % 4 !=3){
347 <        cout << "Error: Didn't find the expected number elements in the following cut string: '" << cutString << "'\n";
347 >        clog << "Error: Didn't find the expected number elements in the following cut string: '" << cutString << "'\n";
348          exit(0);
349        }
350        tempCut.numSubcuts = (cutStringVector.size()+1)/4;
# Line 342 | Line 370 | OSUAnalysis::OSUAnalysis (const edm::Par
370        string numberRequiredString = cuts_.at(currentCut).getParameter<string> ("numberRequired");
371        vector<string> numberRequiredVector = splitString(numberRequiredString);
372        if(numberRequiredVector.size()!=2){
373 <        cout << "Error: Didn't find two elements in the following number requirement string: '" << numberRequiredString << "'\n";
373 >        clog << "Error: Didn't find two elements in the following number requirement string: '" << numberRequiredString << "'\n";
374          exit(0);
375        }
376  
# Line 350 | Line 378 | OSUAnalysis::OSUAnalysis (const edm::Par
378        tempCut.numberRequired = numberRequiredInt;// number of objects required to pass the cut
379        tempCut.eventComparativeOperator = numberRequiredVector.at(0);// comparison to make
380  
381 <      //Set up vectors to store the directories and subDIrectories for each channel.
381 >      //Set up vectors to store the directories and subDirectories for each channel.
382        string subSubDirName;
383        string tempCutName;
384        if(cuts_.at(currentCut).exists("alias")){
385          tempCutName = cuts_.at(currentCut).getParameter<string> ("alias");
386 <        subSubDirName = "After " + cuts_.at(currentCut).getParameter<string> ("alias") + " Cut Applied";
386 >        subSubDirName = "After " + tempCutName + " Cut Applied";
387        }
388        else{
389          //construct string for cutflow table
# Line 366 | Line 394 | OSUAnalysis::OSUAnalysis (const edm::Par
394          subSubDirName = "After " + numberRequiredString + " " + collectionString + " with " + cutString + " Cut Applied";
395        }
396  
397 +      tempCut.isVeto = false;
398 +      if(cuts_.at(currentCut).exists("isVeto")){
399 +        bool isVeto = cuts_.at(currentCut).getParameter<bool> ("isVeto");
400 +        if (isVeto == true) tempCut.isVeto = true;
401 +      }
402        subSubDirNames.push_back(subSubDirName);
403        tempCut.name = tempCutName;
404  
# Line 381 | Line 414 | OSUAnalysis::OSUAnalysis (const edm::Par
414      //loop over the cuts to set up subdirectory for each cut if GetPlotsAfterEachCut_ is true.
415      if(GetPlotsAfterEachCut_){
416        for( uint currentDir=0; currentDir != subSubDirNames.size(); currentDir++){
417 <        TFileDirectory subSubDir = subDir.mkdir( subSubDirNames[currentDir] );
418 <        directories.push_back(subSubDir);
419 <        map<string, TH1D*> oneDhistoMap;
420 <        oneDHistsTmp.push_back(oneDhistoMap);
421 <        map<string, TH2D*> twoDhistoMap;
422 <        twoDHistsTmp.push_back(twoDhistoMap);
417 >        TFileDirectory subSubDir = subDir.mkdir( subSubDirNames[currentDir] );
418 >        directories.push_back(subSubDir);
419 >        map<string, TH1D*> oneDhistoMap;
420 >        oneDHistsTmp.push_back(oneDhistoMap);
421 >        map<string, TH2D*> twoDhistoMap;
422 >        twoDHistsTmp.push_back(twoDhistoMap);
423        }
424 +      treeDirectories.push_back(subDir);
425        oneDHists_.push_back(oneDHistsTmp);
426        twoDHists_.push_back(twoDHistsTmp);
427      }
# Line 400 | Line 434 | OSUAnalysis::OSUAnalysis (const edm::Par
434        oneDHists_.push_back(oneDHistsTmp);
435        twoDHists_.push_back(twoDHistsTmp);
436        directories.push_back(subDir);
437 +      treeDirectories.push_back(subDir);
438  
439      }
440  
441 +    for(uint currentDir = 0; !useEDMFormat_ && currentDir != treeDirectories.size(); currentDir++){
442 +      TTree* newTree = treeDirectories.at(currentDir).make<TTree> (TString("BNTree_"+channelLabel), TString("BNTree_"+channelLabel));
443 +      BNTrees_.push_back(newTree);
444 +      for (uint iBranch = 0; iBranch < treeBranches_.size(); iBranch++){
445 +        BranchSpecs currentVar = treeBranches_.at(iBranch);
446 +        vector<float> newVec;
447 +        BNTreeBranchVals_[currentVar.name] = newVec;
448 +        BNTrees_.back()->Branch(TString(currentVar.name), &BNTreeBranchVals_.at(currentVar.name));
449 +      } // end for (uint iBranch = 0; iBranch < treeBranches_.size(); iBranch++)
450 +    }
451  
452      //book all histograms included in the configuration
453      for(uint currentDir = 0; currentDir != directories.size(); currentDir++){//loop over all the directories.
409 –      
410 –      TTree* newTree = directories.at(currentDir).make<TTree> (TString("BNTree_"+channelLabel), TString("BNTree_"+channelLabel));  
411 –      BNTrees_.push_back(newTree);      
412 –      for (uint iBranch = 0; iBranch < treeBranches_.size(); iBranch++){
413 –        BranchSpecs currentVar = treeBranches_.at(iBranch);
414 –        vector<float> newVec;  
415 –        BNTreeBranchVals_[currentVar.name] = newVec;  
416 –        BNTrees_.back()->Branch(TString(currentVar.name), &BNTreeBranchVals_.at(currentVar.name));
417 –      } // end for (uint iBranch = 0; iBranch < treeBranches_.size(); iBranch++){
454  
455        for(uint currentHistogramIndex = 0; currentHistogramIndex != histograms.size(); currentHistogramIndex++){
456  
457 <        histogram currentHistogram = histograms.at(currentHistogramIndex);
458 <        int numBinsElements = currentHistogram.bins.size();
459 <        int numInputVariables = currentHistogram.inputVariables.size();
460 <        int numBinEdgesX = currentHistogram.variableBinsX.size();
461 <        int numBinEdgesY = currentHistogram.variableBinsY.size();
462 <        
463 <        if(numBinsElements == 1){
464 <          if(numBinEdgesX > 1){
465 <            if(numBinEdgesY > 1)
466 <              numBinsElements = 6;
467 <            else
468 <              numBinsElements = 3;
469 <          }
470 <        }
471 <        if(numBinsElements != 3 && numBinsElements !=6){
472 <          cout << "Error: Didn't find correct number of bin specifications for histogram named '" << currentHistogram.name << "'\n";
473 <          exit(0);
474 <        }
475 <        else if((numBinsElements == 3 && numInputVariables !=1) || (numBinsElements == 6 && numInputVariables!=2)){
476 <          cout << "Error: Didn't find correct number of input variables for histogram named '" << currentHistogram.name << "'\n";
477 <          exit(0);
478 <        }
479 <        else if(numBinsElements == 3){
480 <          if (currentHistogram.bins.size () == 3)
481 <            oneDHists_.at(currentChannel).at(currentDir)[currentHistogram.name] = directories.at(currentDir).make<TH1D> (TString(currentHistogram.name),channelLabel+" channel: "+currentHistogram.title, currentHistogram.bins.at(0), currentHistogram.bins.at(1), currentHistogram.bins.at(2));
482 <          else
483 <            {
484 <              oneDHists_.at(currentChannel).at(currentDir)[currentHistogram.name] = directories.at(currentDir).make<TH1D> (TString(currentHistogram.name),channelLabel+" channel: "+currentHistogram.title, numBinEdgesX - 1, currentHistogram.variableBinsX.data ());
485 <            }
486 <        }
487 <        else if(numBinsElements == 6){
488 <          if (currentHistogram.bins.size () == 6)
489 <            twoDHists_.at(currentChannel).at(currentDir)[currentHistogram.name] = directories.at(currentDir).make<TH2D> (TString(currentHistogram.name),channelLabel+" channel: "+currentHistogram.title, currentHistogram.bins.at(0), currentHistogram.bins.at(1), currentHistogram.bins.at(2),currentHistogram.bins.at(3),currentHistogram.bins.at(4),currentHistogram.bins.at(5));
490 <          else
491 <            twoDHists_.at(currentChannel).at(currentDir)[currentHistogram.name] = directories.at(currentDir).make<TH2D> (TString(currentHistogram.name),channelLabel+" channel: "+currentHistogram.title, numBinEdgesX - 1, currentHistogram.variableBinsX.data (), numBinEdgesY - 1, currentHistogram.variableBinsY.data ());
492 <        }
493 <
494 <
495 <        if(currentHistogram.name.find("GenMatch")==string::npos) continue;
496 <
497 <        // bin      particle type
498 <        // ---      -------------
499 <        //  0        unmatched
500 <        //  1        u
501 <        //  2        d
502 <        //  3        s
503 <        //  4        c
504 <        //  5        b
505 <        //  6        t
506 <        //  7        e
507 <        //  8        mu
508 <        //  9        tau
509 <        // 10        nu
510 <        // 11        g
511 <        // 12        gamma
512 <        // 13        Z
513 <        // 14        W
514 <        // 15        light meson
515 <        // 16        K meson
516 <        // 17        D meson
517 <        // 18        B meson
518 <        // 19        light baryon
519 <        // 20        strange baryon
520 <        // 21        charm baryon
521 <        // 22        bottom baryon
522 <        // 23        QCD string
523 <        // 24        other
524 <
525 <        vector<TString> labelArray;
526 <        labelArray.push_back("unmatched");
527 <        labelArray.push_back("u");
528 <        labelArray.push_back("d");
529 <        labelArray.push_back("s");
530 <        labelArray.push_back("c");
531 <        labelArray.push_back("b");
532 <        labelArray.push_back("t");
533 <        labelArray.push_back("e");
534 <        labelArray.push_back("#mu");
535 <        labelArray.push_back("#tau");
536 <        labelArray.push_back("#nu");
537 <        labelArray.push_back("g");
538 <        labelArray.push_back("#gamma");
539 <        labelArray.push_back("Z");
540 <        labelArray.push_back("W");
541 <        labelArray.push_back("light meson");
542 <        labelArray.push_back("K meson");
543 <        labelArray.push_back("D meson");
544 <        labelArray.push_back("B meson");
545 <        labelArray.push_back("light baryon");
546 <        labelArray.push_back("strange baryon");
547 <        labelArray.push_back("charm baryon");
548 <        labelArray.push_back("bottom baryon");
549 <        labelArray.push_back("QCD string");
550 <        labelArray.push_back("other");
551 <
552 <        for(int bin = 0; bin !=currentHistogram.bins.at(0); bin++){
553 <          if(currentHistogram.name.find("GenMatchIdVsMotherId")==string::npos && currentHistogram.name.find("GenMatchIdVsGrandmotherId")==string::npos) {
554 <            oneDHists_.at(currentChannel).at(currentDir)[currentHistogram.name]->GetXaxis()->SetBinLabel(bin+1,labelArray.at(bin));
555 <          }
556 <          else {
557 <            twoDHists_.at(currentChannel).at(currentDir)[currentHistogram.name]->GetYaxis()->SetBinLabel(bin+1,labelArray.at(currentHistogram.bins.at(0)-bin-1));
558 <            twoDHists_.at(currentChannel).at(currentDir)[currentHistogram.name]->GetXaxis()->SetBinLabel(bin+1,labelArray.at(bin));
559 <          }
560 <        }
561 <        if(currentHistogram.name.find("GenMatchIdVsMotherId")!=string::npos || currentHistogram.name.find("GenMatchIdVsGrandmotherId")!=string::npos) {
562 <          twoDHists_.at(currentChannel).at(currentDir)[currentHistogram.name]->GetXaxis()->CenterTitle();
563 <          twoDHists_.at(currentChannel).at(currentDir)[currentHistogram.name]->GetYaxis()->CenterTitle();
564 <        }
457 >        histogram currentHistogram = histograms.at(currentHistogramIndex);
458 >        int numBinsElements = currentHistogram.bins.size();
459 >        int numInputVariables = currentHistogram.inputVariables.size();
460 >        int numBinEdgesX = currentHistogram.variableBinsX.size();
461 >        int numBinEdgesY = currentHistogram.variableBinsY.size();
462 >
463 >        if(numBinsElements == 1){
464 >          if(numBinEdgesX > 1){
465 >            if(numBinEdgesY > 1)
466 >              numBinsElements = 6;
467 >            else
468 >              numBinsElements = 3;
469 >          }
470 >        }
471 >        if(numBinsElements != 3 && numBinsElements !=6){
472 >          clog << "Error: Didn't find correct number of bin specifications for histogram named '" << currentHistogram.name << "'\n";
473 >          exit(0);
474 >        }
475 >        else if((numBinsElements == 3 && numInputVariables !=1) || (numBinsElements == 6 && numInputVariables!=2)){
476 >          clog << "Error: Didn't find correct number of input variables for histogram named '" << currentHistogram.name << "'\n";
477 >          exit(0);
478 >        }
479 >        else if(numBinsElements == 3){
480 >          if (currentHistogram.bins.size () == 3)
481 >            oneDHists_.at(currentChannel).at(currentDir)[currentHistogram.name] = directories.at(currentDir).make<TH1D> (TString(currentHistogram.name),channelLabel+" channel: "+currentHistogram.title, currentHistogram.bins.at(0), currentHistogram.bins.at(1), currentHistogram.bins.at(2));
482 >          else
483 >            {
484 >              oneDHists_.at(currentChannel).at(currentDir)[currentHistogram.name] = directories.at(currentDir).make<TH1D> (TString(currentHistogram.name),channelLabel+" channel: "+currentHistogram.title, numBinEdgesX - 1, currentHistogram.variableBinsX.data ());
485 >            }
486 >        }
487 >        else if(numBinsElements == 6){
488 >          if (currentHistogram.bins.size () == 6)
489 >            twoDHists_.at(currentChannel).at(currentDir)[currentHistogram.name] = directories.at(currentDir).make<TH2D> (TString(currentHistogram.name),channelLabel+" channel: "+currentHistogram.title, currentHistogram.bins.at(0), currentHistogram.bins.at(1), currentHistogram.bins.at(2),currentHistogram.bins.at(3),currentHistogram.bins.at(4),currentHistogram.bins.at(5));
490 >          else
491 >            twoDHists_.at(currentChannel).at(currentDir)[currentHistogram.name] = directories.at(currentDir).make<TH2D> (TString(currentHistogram.name),channelLabel+" channel: "+currentHistogram.title, numBinEdgesX - 1, currentHistogram.variableBinsX.data (), numBinEdgesY - 1, currentHistogram.variableBinsY.data ());
492 >        }
493 >
494 >
495 >        if(currentHistogram.name.find("GenMatch")==string::npos) continue;
496 >
497 >        // bin      particle type
498 >        // ---      -------------
499 >        //  0        unmatched
500 >        //  1        u
501 >        //  2        d
502 >        //  3        s
503 >        //  4        c
504 >        //  5        b
505 >        //  6        t
506 >        //  7        e
507 >        //  8        mu
508 >        //  9        tau
509 >        // 10        nu
510 >        // 11        g
511 >        // 12        gamma
512 >        // 13        Z
513 >        // 14        W
514 >        // 15        light meson
515 >        // 16        K meson
516 >        // 17        D meson
517 >        // 18        B meson
518 >        // 19        light baryon
519 >        // 20        strange baryon
520 >        // 21        charm baryon
521 >        // 22        bottom baryon
522 >        // 23        QCD string
523 >        // 24        other
524 >
525 >        vector<TString> labelArray;
526 >        labelArray.push_back("unmatched");
527 >        labelArray.push_back("u");
528 >        labelArray.push_back("d");
529 >        labelArray.push_back("s");
530 >        labelArray.push_back("c");
531 >        labelArray.push_back("b");
532 >        labelArray.push_back("t");
533 >        labelArray.push_back("e");
534 >        labelArray.push_back("#mu");
535 >        labelArray.push_back("#tau");
536 >        labelArray.push_back("#nu");
537 >        labelArray.push_back("g");
538 >        labelArray.push_back("#gamma");
539 >        labelArray.push_back("Z");
540 >        labelArray.push_back("W");
541 >        labelArray.push_back("light meson");
542 >        labelArray.push_back("K meson");
543 >        labelArray.push_back("D meson");
544 >        labelArray.push_back("B meson");
545 >        labelArray.push_back("light baryon");
546 >        labelArray.push_back("strange baryon");
547 >        labelArray.push_back("charm baryon");
548 >        labelArray.push_back("bottom baryon");
549 >        labelArray.push_back("QCD string");
550 >        labelArray.push_back("other");
551 >
552 >        for(int bin = 0; bin !=currentHistogram.bins.at(0); bin++){
553 >          if(currentHistogram.name.find("GenMatchIdVsMotherId")==string::npos && currentHistogram.name.find("GenMatchIdVsGrandmotherId")==string::npos) {
554 >            oneDHists_.at(currentChannel).at(currentDir)[currentHistogram.name]->GetXaxis()->SetBinLabel(bin+1,labelArray.at(bin));
555 >          }
556 >          else {
557 >            twoDHists_.at(currentChannel).at(currentDir)[currentHistogram.name]->GetYaxis()->SetBinLabel(bin+1,labelArray.at(currentHistogram.bins.at(0)-bin-1));
558 >            twoDHists_.at(currentChannel).at(currentDir)[currentHistogram.name]->GetXaxis()->SetBinLabel(bin+1,labelArray.at(bin));
559 >          }
560 >        }
561 >        if(currentHistogram.name.find("GenMatchIdVsMotherId")!=string::npos || currentHistogram.name.find("GenMatchIdVsGrandmotherId")!=string::npos) {
562 >          twoDHists_.at(currentChannel).at(currentDir)[currentHistogram.name]->GetXaxis()->CenterTitle();
563 >          twoDHists_.at(currentChannel).at(currentDir)[currentHistogram.name]->GetYaxis()->CenterTitle();
564 >        }
565  
566 <      }  // end      for(uint currentHistogramIndex = 0; currentHistogramIndex != histograms.size(); currentHistogramIndex++){
566 >      }  // end      for(uint currentHistogramIndex = 0; currentHistogramIndex != histograms.size(); currentHistogramIndex++)
567  
568  
569        // Book a histogram for the number of each object type to be plotted.
570        // Name of objectToPlot here must match the name specified in OSUAnalysis::analyze().
571        for (uint currentObjectIndex = 0; currentObjectIndex != objectsToPlot.size(); currentObjectIndex++){
572 <        string currentObject = objectsToPlot.at(currentObjectIndex);
573 <        int maxNum = 10;
574 <        if(currentObject == "mcparticles") maxNum = 50;
575 <        else if(currentObject == "primaryvertexs") maxNum = 50;
576 <
577 <        if(currentObject == "muon-muon pairs")                currentObject = "dimuonPairs";
578 <        else if(currentObject == "electron-electron pairs")   currentObject = "dielectronPairs";
579 <        else if(currentObject == "electron-muon pairs")       currentObject = "electronMuonPairs";
580 <        else if(currentObject == "secondary jets")            currentObject = "secondaryJets";
581 <        else if(currentObject == "jet-jet pairs")             currentObject = "dijetPairs";
582 <        else if(currentObject == "electron-jet pairs")        currentObject = "electronJetPairs";
583 <        else if(currentObject == "muon-jet pairs")            currentObject = "muonJetPairs";
584 <        else if(currentObject == "track-event pairs")         currentObject = "trackEventPairs";
585 <        else if(currentObject == "electron-track pairs")      currentObject = "electronTrackPairs";
586 <        else if(currentObject == "muon-track pairs")          currentObject = "muonTrackPairs";
587 <        else if(currentObject == "muon-tau pairs")            currentObject = "muonTauPairs";
588 <        else if(currentObject == "tau-tau pairs")             currentObject = "ditauPairs";
589 <        else if(currentObject == "tau-track pairs")           currentObject = "tauTrackPairs";
590 <        else if(currentObject == "muon-secondary muon pairs") currentObject = "muonSecondaryMuonPairs";
591 <        else if(currentObject == "secondary muons")           currentObject = "secondaryMuons";
592 <        else if(currentObject == "electron-secondary electron pairs") currentObject = "electronSecondaryElectronPairs";
593 <        else if(currentObject == "secondary electrons")       currentObject = "secondaryElectrons";
594 <        else if(currentObject == "electron-trigobj pairs")    currentObject = "electronTrigobjPairs";
595 <        else if(currentObject == "muon-trigobj pairs")        currentObject = "muonTrigobjPairs";
596 <
597 <        currentObject.at(0) = toupper(currentObject.at(0));
598 <        string histoName = "num" + currentObject;
599 <
600 <        if(histoName == "numPrimaryvertexs"){
601 <          string newHistoName = histoName + "BeforePileupCorrection";
602 <          oneDHists_.at(currentChannel).at(currentDir)[newHistoName] = directories.at(currentDir).make<TH1D> (TString(newHistoName),channelLabel+" channel: Number of Selected "+currentObject+" Before Pileup Correction; # "+currentObject, maxNum, 0, maxNum);
603 <          newHistoName = histoName + "AfterPileupCorrection";
604 <          oneDHists_.at(currentChannel).at(currentDir)[newHistoName] = directories.at(currentDir).make<TH1D> (TString(newHistoName),channelLabel+" channel: Number of Selected "+currentObject+ " After Pileup Correction; # "+currentObject, maxNum, 0, maxNum);
605 <        }
606 <        else
607 <          oneDHists_.at(currentChannel).at(currentDir)[histoName] = directories.at(currentDir).make<TH1D> (TString(histoName),channelLabel+" channel: Number of Selected "+currentObject+"; # "+currentObject, maxNum, 0, maxNum);
572 >        string currentObject = objectsToPlot.at(currentObjectIndex);
573 >        int maxNum = 10;
574 >        if(currentObject == "mcparticles") maxNum = 50;
575 >        else if(currentObject == "primaryvertexs") maxNum = 50;
576 >
577 >        if(currentObject == "muon-muon pairs")                currentObject = "dimuonPairs";
578 >        else if(currentObject == "electron-electron pairs")   currentObject = "dielectronPairs";
579 >        else if(currentObject == "electron-muon pairs")       currentObject = "electronMuonPairs";
580 >        else if(currentObject == "electron-photon pairs")     currentObject = "electronPhotonPairs";
581 >        else if(currentObject == "muon-photon pairs")         currentObject = "muonPhotonPairs";
582 >        else if(currentObject == "secondary jets")            currentObject = "secondaryJets";
583 >        else if(currentObject == "secondary photons")            currentObject = "secondaryPhotons";
584 >        else if(currentObject == "jet-jet pairs")             currentObject = "dijetPairs";
585 >        else if(currentObject == "jet-secondary jet pairs")   currentObject = "jetSecondaryJetPairs";
586 >        else if(currentObject == "electron-jet pairs")        currentObject = "electronJetPairs";
587 >        else if(currentObject == "muon-jet pairs")            currentObject = "muonJetPairs";
588 >        else if(currentObject == "muon-event pairs")            currentObject = "muonEventPairs";
589 >        else if(currentObject == "photon-jet pairs")            currentObject = "photonJetPairs";
590 >        else if(currentObject == "met-jet pairs")             currentObject = "metJetPairs";
591 >        else if(currentObject == "track-jet pairs")           currentObject = "trackJetPairs";
592 >        else if(currentObject == "muon-secondary jet pairs")  currentObject = "muonSecondaryJetPairs";
593 >        else if(currentObject == "muon-secondary photon pairs")  currentObject = "muonSecondaryPhotonPairs";
594 >        else if(currentObject == "photon-secondary jet pairs")  currentObject = "photonSecondaryJetPairs";
595 >        else if(currentObject == "electron-secondary jet pairs")  currentObject = "electronSecondaryJetPairs";
596 >        else if(currentObject == "track-event pairs")         currentObject = "trackEventPairs";
597 >        else if(currentObject == "electron-track pairs")      currentObject = "electronTrackPairs";
598 >        else if(currentObject == "muon-track pairs")          currentObject = "muonTrackPairs";
599 >        else if(currentObject == "muon-tau pairs")            currentObject = "muonTauPairs";
600 >        else if(currentObject == "tau-tau pairs")             currentObject = "ditauPairs";
601 >        else if(currentObject == "tau-track pairs")           currentObject = "tauTrackPairs";
602 >        else if(currentObject == "muon-secondary muon pairs") currentObject = "muonSecondaryMuonPairs";
603 >        else if(currentObject == "secondary muons")           currentObject = "secondaryMuons";
604 >        else if(currentObject == "electron-secondary electron pairs") currentObject = "electronSecondaryElectronPairs";
605 >        else if(currentObject == "secondary electrons")       currentObject = "secondaryElectrons";
606 >        else if(currentObject == "electron-trigobj pairs")    currentObject = "electronTrigobjPairs";
607 >        else if(currentObject == "muon-trigobj pairs")        currentObject = "muonTrigobjPairs";
608 >
609 >        currentObject.at(0) = toupper(currentObject.at(0));
610 >        string histoName = "num" + currentObject;
611 >
612 >        if(histoName == "numPrimaryvertexs"){
613 >          string newHistoName = histoName + "BeforePileupCorrection";
614 >          oneDHists_.at(currentChannel).at(currentDir)[newHistoName] = directories.at(currentDir).make<TH1D> (TString(newHistoName),channelLabel+" channel: Number of Selected "+currentObject+" Before Pileup Correction; # "+currentObject, maxNum, 0, maxNum);
615 >          newHistoName = histoName + "AfterPileupCorrection";
616 >          oneDHists_.at(currentChannel).at(currentDir)[newHistoName] = directories.at(currentDir).make<TH1D> (TString(newHistoName),channelLabel+" channel: Number of Selected "+currentObject+ " After Pileup Correction; # "+currentObject, maxNum, 0, maxNum);
617 >        }
618 >        else
619 >          oneDHists_.at(currentChannel).at(currentDir)[histoName] = directories.at(currentDir).make<TH1D> (TString(histoName),channelLabel+" channel: Number of Selected "+currentObject+"; # "+currentObject, maxNum, 0, maxNum);
620        }
621      }//end of loop over directories
622      channels.push_back(tempChannel);
# Line 582 | Line 630 | OSUAnalysis::OSUAnalysis (const edm::Par
630    //make unique vector of objects we need to cut on
631    sort( objectsToCut.begin(), objectsToCut.end() );
632    objectsToCut.erase( unique( objectsToCut.begin(), objectsToCut.end() ), objectsToCut.end() );
633 +  //make unique vector of objects we need to set flags for
634 +  sort( objectsToFlag.begin(), objectsToFlag.end() );
635 +  objectsToFlag.erase( unique( objectsToFlag.begin(), objectsToFlag.end() ), objectsToFlag.end() );
636 +
637 +  produces<map<string, bool> > ("channelDecisions");
638  
639 +  if (printEventInfo_) {
640 +    findEventsLog = new ofstream();  
641 +    findEventsLog->open("findEvents.txt");  
642 +    clog << "Listing run:lumi:event in file findEvents.txt for events that pass full selection (of any channel)." << endl;  
643 +  }
644  
645 < } // end constructor OSUAnalysis::OSUAnalysis()
645 > } // end constructor OSUAnalysis::OSUAnalysis()
646  
647  
648   OSUAnalysis::~OSUAnalysis ()
# Line 595 | Line 653 | OSUAnalysis::~OSUAnalysis ()
653    for(uint currentChannel = 0; currentChannel != channels_.size(); currentChannel++){
654      delete cutFlows_.at(currentChannel);
655    }
656 +
657 +  if (findEventsLog) findEventsLog->close();  
658 +
659 +  clog << "=============================================" << endl;  
660 +  clog << "Successfully completed OSUAnalysis." << endl;  
661 +  clog << "=============================================" << endl;  
662 +
663   }
664  
665   void
666 < OSUAnalysis::analyze (const edm::Event &event, const edm::EventSetup &setup)
666 > OSUAnalysis::produce (edm::Event &event, const edm::EventSetup &setup)
667   {
603 –
668    // Retrieve necessary collections from the event.
669  
670    if (find(objectsToGet.begin(), objectsToGet.end(), "triggers") != objectsToGet.end())
# Line 666 | Line 730 | OSUAnalysis::analyze (const edm::Event &
730    //get pile-up event weight
731    if (doPileupReweighting_ && datasetType_ != "data") {
732      //for "data" datasets, the numTruePV is always set to -1
733 <    if (events->at(0).numTruePV < 0) cout << "WARNING[OSUAnalysis::analyze]: Event has numTruePV<0.  Turning off pile-up reweighting." << endl;  
734 <    else masterScaleFactor *= puWeight_->at (events->at (0).numTruePV);  
733 >    if (events->at(0).numTruePV < 0) clog << "WARNING[OSUAnalysis::analyze]: Event has numTruePV<0.  Turning off pile-up reweighting." << endl;
734 >    else masterScaleFactor *= puWeight_->at (events->at (0).numTruePV);
735    }
736  
737    stopCTauScaleFactor_ = 1.0;
# Line 677 | Line 741 | OSUAnalysis::analyze (const edm::Event &
741  
742    //loop over all channels
743  
744 +  auto_ptr<map<string, bool> > channelDecisions (new map<string, bool>);
745    for(uint currentChannelIndex = 0; currentChannelIndex != channels.size(); currentChannelIndex++){
746      channel currentChannel = channels.at(currentChannelIndex);
747  
# Line 684 | Line 749 | OSUAnalysis::analyze (const edm::Event &
749      counterMap passingCounter;
750      cumulativeFlags.clear ();
751  
752 <    for (map<string, vector<float>>::iterator iter = BNTreeBranchVals_.begin();
753 <         iter != BNTreeBranchVals_.end(); iter++) {
752 >    for (map<string, vector<float>>::iterator iter = BNTreeBranchVals_.begin();
753 >         iter != BNTreeBranchVals_.end(); iter++) {
754        iter->second.clear();  // clear array
755      }
756  
# Line 698 | Line 763 | OSUAnalysis::analyze (const edm::Event &
763      //loop over all cuts
764      for(uint currentCutIndex = 0; currentCutIndex != currentChannel.cuts.size(); currentCutIndex++){
765        cut currentCut = currentChannel.cuts.at(currentCutIndex);
766 <      for(uint currentObjectIndex = 0; currentObjectIndex != objectsToCut.size(); currentObjectIndex++){
767 <        string currentObject = objectsToCut.at(currentObjectIndex);
766 >
767 >      for(uint currentObjectIndex = 0; currentObjectIndex != objectsToFlag.size(); currentObjectIndex++){
768 >        string currentObject = objectsToFlag.at(currentObjectIndex);
769  
770          //initialize maps to get ready to set cuts
771 <        individualFlags[currentObject].push_back (vector<bool> ());
772 <        cumulativeFlags[currentObject].push_back (vector<bool> ());
771 >        individualFlags[currentObject].push_back (vector<pair<bool,bool> > ());
772 >        cumulativeFlags[currentObject].push_back (vector<pair<bool,bool> > ());
773  
774        }
775 <      for(uint currentObjectIndex = 0; currentObjectIndex != objectsToCut.size(); currentObjectIndex++){
776 <        string currentObject = objectsToCut.at(currentObjectIndex);
775 >
776 >      //set flags for all relevant objects
777 >      for(uint currentObjectIndex = 0; currentObjectIndex != objectsToFlag.size(); currentObjectIndex++){
778 >        string currentObject = objectsToFlag.at(currentObjectIndex);
779  
780          int flagsForPairCutsIndex = max(int(currentCutIndex-1),0);
781  
782  
783          if     (currentObject == "jets")            setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,jets.product(),"jets");
784          else if(currentObject == "secondary jets")  setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,jets.product(),"secondary jets");
785 +        else if(currentObject == "secondary photons")  setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,photons.product(),"secondary photons");
786          else if(currentObject == "muons")           setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,muons.product(),"muons");
787          else if(currentObject == "secondary muons") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,muons.product(),"secondary muons");
788          else if(currentObject == "secondary electrons") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,electrons.product(),"secondary electrons");
# Line 738 | Line 807 | OSUAnalysis::analyze (const edm::Event &
807                                                                     "muon-muon pairs");
808  
809          else if(currentObject == "muon-secondary muon pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,muons.product(),muons.product(), \
810 <                                                                             cumulativeFlags.at("muons").at(flagsForPairCutsIndex), \
811 <                                                                             cumulativeFlags.at("secondary muons").at(flagsForPairCutsIndex), \
812 <                                                                             "muon-secondary muon pairs");
810 >                                                                             cumulativeFlags.at("muons").at(flagsForPairCutsIndex), \
811 >                                                                             cumulativeFlags.at("secondary muons").at(flagsForPairCutsIndex), \
812 >                                                                             "muon-secondary muon pairs");
813 >
814 >        else if(currentObject == "muon-secondary photon pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,muons.product(),photons.product(), \
815 >                                                                             cumulativeFlags.at("muons").at(flagsForPairCutsIndex), \
816 >                                                                             cumulativeFlags.at("secondary photons").at(flagsForPairCutsIndex), \
817 >                                                                             "muon-secondary photon pairs");
818 >        else if(currentObject == "muon-secondary jet pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,muons.product(),jets.product(), \
819 >                                                                             cumulativeFlags.at("muons").at(flagsForPairCutsIndex), \
820 >                                                                             cumulativeFlags.at("secondary jets").at(flagsForPairCutsIndex), \
821 >                                                                             "muon-secondary jet pairs");
822 >        else if(currentObject == "photon-secondary jet pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,photons.product(),jets.product(), \
823 >                                                                             cumulativeFlags.at("photons").at(flagsForPairCutsIndex), \
824 >                                                                             cumulativeFlags.at("secondary jets").at(flagsForPairCutsIndex), \
825 >                                                                             "photon-secondary jet pairs");
826 >
827 >        else if(currentObject == "electron-secondary jet pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,electrons.product(),jets.product(), \
828 >                                                                             cumulativeFlags.at("electrons").at(flagsForPairCutsIndex), \
829 >                                                                             cumulativeFlags.at("secondary jets").at(flagsForPairCutsIndex), \
830 >                                                                             "electron-secondary jet pairs");
831  
832          else if(currentObject == "electron-secondary electron pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,electrons.product(),electrons.product(), \
833 <                                                                                     cumulativeFlags.at("electrons").at(flagsForPairCutsIndex), \
834 <                                                                                     cumulativeFlags.at("secondary electrons").at(flagsForPairCutsIndex), \
835 <                                                                                     "electron-secondary electron pairs");
833 >                                                                                     cumulativeFlags.at("electrons").at(flagsForPairCutsIndex), \
834 >                                                                                     cumulativeFlags.at("secondary electrons").at(flagsForPairCutsIndex), \
835 >                                                                                     "electron-secondary electron pairs");
836  
837          else if(currentObject == "electron-electron pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,electrons.product(),electrons.product(), \
838                                                                             cumulativeFlags.at("electrons").at(flagsForPairCutsIndex), \
# Line 756 | Line 843 | OSUAnalysis::analyze (const edm::Event &
843                                                                         cumulativeFlags.at("muons").at(flagsForPairCutsIndex), \
844                                                                         "electron-muon pairs");
845          else if(currentObject == "jet-jet pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,jets.product(),jets.product(), \
846 <                                                                 cumulativeFlags.at("jets").at(flagsForPairCutsIndex), \
847 <                                                                 cumulativeFlags.at("jets").at(flagsForPairCutsIndex), \
848 <                                                                 "jet-jet pairs");
846 >                                                                 cumulativeFlags.at("jets").at(flagsForPairCutsIndex), \
847 >                                                                 cumulativeFlags.at("jets").at(flagsForPairCutsIndex), \
848 >                                                                 "jet-jet pairs");
849 >        else if(currentObject == "jet-secondary jet pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,jets.product(),jets.product(), \
850 >                                                                 cumulativeFlags.at("jets").at(flagsForPairCutsIndex), \
851 >                                                                 cumulativeFlags.at("secondary jets").at(flagsForPairCutsIndex),\
852 >                                                                 "jet-secondary jet pairs");
853          else if(currentObject == "electron-jet pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,electrons.product(),jets.product(), \
854 <                                                                      cumulativeFlags.at("electrons").at(flagsForPairCutsIndex), \
855 <                                                                      cumulativeFlags.at("jets").at(flagsForPairCutsIndex), \
856 <                                                                      "electron-jet pairs");
854 >                                                                      cumulativeFlags.at("electrons").at(flagsForPairCutsIndex), \
855 >                                                                      cumulativeFlags.at("jets").at(flagsForPairCutsIndex), \
856 >                                                                      "electron-jet pairs");
857 >        else if(currentObject == "electron-photon pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,electrons.product(),photons.product(), \
858 >                                                                      cumulativeFlags.at("electrons").at(flagsForPairCutsIndex), \
859 >                                                                      cumulativeFlags.at("photons").at(flagsForPairCutsIndex), \
860 >                                                                      "electron-photon pairs");
861 >        else if(currentObject == "photon-jet pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,photons.product(),jets.product(), \
862 >                                                                      cumulativeFlags.at("photons").at(flagsForPairCutsIndex), \
863 >                                                                      cumulativeFlags.at("jets").at(flagsForPairCutsIndex), \
864 >                                                                      "photon-jet pairs");
865          else if(currentObject == "muon-jet pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,muons.product(),jets.product(), \
866 <                                                                  cumulativeFlags.at("muons").at(flagsForPairCutsIndex), \
867 <                                                                  cumulativeFlags.at("jets").at(flagsForPairCutsIndex), \
868 <                                                                  "muon-jet pairs");
866 >                                                                  cumulativeFlags.at("muons").at(flagsForPairCutsIndex), \
867 >                                                                  cumulativeFlags.at("jets").at(flagsForPairCutsIndex), \
868 >                                                                  "muon-jet pairs");
869 >        else if(currentObject == "muon-event pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,muons.product(),events.product(), \
870 >                                                                  cumulativeFlags.at("muons").at(flagsForPairCutsIndex), \
871 >                                                                  cumulativeFlags.at("events").at(flagsForPairCutsIndex), \
872 >                                                                  "muon-event pairs");
873 >        else if(currentObject == "met-jet pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,mets.product(),jets.product(), \
874 >                                                                  cumulativeFlags.at("mets").at(flagsForPairCutsIndex), \
875 >                                                                  cumulativeFlags.at("jets").at(flagsForPairCutsIndex), \
876 >                                                                  "met-jet pairs");
877 >        else if(currentObject == "track-jet pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,tracks.product(),jets.product(), \
878 >                                                                 cumulativeFlags.at("tracks").at(flagsForPairCutsIndex), \
879 >                                                                 cumulativeFlags.at("jets").at(flagsForPairCutsIndex), \
880 >                                                                 "track-jet pairs");
881 >        else if(currentObject == "muon-photon pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,muons.product(),photons.product(), \
882 >                                                                  cumulativeFlags.at("muons").at(flagsForPairCutsIndex), \
883 >                                                                  cumulativeFlags.at("photons").at(flagsForPairCutsIndex), \
884 >                                                                  "muon-photon pairs");
885          else if(currentObject == "track-event pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,tracks.product(),events.product(),
886                                                                       cumulativeFlags.at("tracks").at(flagsForPairCutsIndex),
887                                                                       cumulativeFlags.at("events").at(flagsForPairCutsIndex),
# Line 788 | Line 903 | OSUAnalysis::analyze (const edm::Event &
903                                                                   cumulativeFlags.at("taus").at(flagsForPairCutsIndex),
904                                                                   "tau-tau pairs");
905          else if(currentObject == "tau-track pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,taus .product(),tracks.product(),
906 <                                                                   cumulativeFlags.at("taus").at(flagsForPairCutsIndex),
907 <                                                                   cumulativeFlags.at("tracks").at(flagsForPairCutsIndex),
908 <                                                                   "tau-track pairs");
906 >                                                                   cumulativeFlags.at("taus").at(flagsForPairCutsIndex),
907 >                                                                   cumulativeFlags.at("tracks").at(flagsForPairCutsIndex),
908 >                                                                   "tau-track pairs");
909          else if(currentObject == "electron-trigobj pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,electrons.product(),trigobjs.product(),
910                                                                            cumulativeFlags.at("electrons").at(flagsForPairCutsIndex),
911                                                                            cumulativeFlags.at("trigobjs").at(flagsForPairCutsIndex),
# Line 808 | Line 923 | OSUAnalysis::analyze (const edm::Event &
923      }//end loop over all cuts
924      //use cumulative flags to apply cuts at event level
925  
811 –    bool eventPassedAllCuts = true;
926      //a vector to store cumulative cut descisions after each cut.
927      vector<bool> eventPassedPreviousCuts;
928 +    bool eventPassedAllCuts = true;
929      //apply trigger (true if none were specified)
930      eventPassedAllCuts = eventPassedAllCuts && triggerDecision;
931  
# Line 821 | Line 936 | OSUAnalysis::analyze (const edm::Event &
936        int numberPassing = 0;
937  
938        for (uint object = 0; object != cumulativeFlags.at(currentCut.inputCollection).at(currentCutIndex).size() ; object++){
939 <        if(cumulativeFlags.at(currentCut.inputCollection).at(currentCutIndex).at(object)) numberPassing++;
939 >        if(cumulativeFlags.at(currentCut.inputCollection).at(currentCutIndex).at(object).first) numberPassing++;
940        }
941        bool cutDecision = evaluateComparison(numberPassing,currentCut.eventComparativeOperator,currentCut.numberRequired);
942        cutFlows_.at(currentChannelIndex)->at (currentCut.name) = cutDecision;
943        eventPassedAllCuts = eventPassedAllCuts && cutDecision;
944        eventPassedPreviousCuts.push_back(eventPassedAllCuts);
945      }
946 +    //applying all appropriate scale factors
947      double scaleFactor = masterScaleFactor;
832 –
948      muonScaleFactor_ = electronScaleFactor_ = bTagScaleFactor_ = 1.0;
949 +
950      if(applyLeptonSF_ && datasetType_ != "data"){
951 <      if(cumulativeFlags.find ("muons") != cumulativeFlags.end ()){
952 <        vector<bool> muonFlags;
951 >      //only apply SFs if we've cut on this object
952 >      if(find(objectsToCut.begin(),objectsToCut.end(),"muons") != objectsToCut.end ()){
953 >        flagPair muonFlags;
954 >        //get the last valid flags in the flag map
955          for (int i = cumulativeFlags.at("muons").size() - 1; i >= 0; i--){
956            if (cumulativeFlags.at("muons").at(i).size()){
957              muonFlags = cumulativeFlags.at("muons").at(i);
958              break;
959            }
960          }
961 +        //apply the weight for each of those objects
962          for (uint muonIndex = 0; muonIndex != muonFlags.size(); muonIndex++){
963 <          if(!muonFlags.at(muonIndex)) continue;
963 >          if(!muonFlags.at(muonIndex).second) continue;
964            muonScaleFactor_ *= muonSFWeight_->at (muons->at(muonIndex).eta);
965          }
966        }
967 <      if(cumulativeFlags.find ("electrons") != cumulativeFlags.end ()){
968 <        vector<bool> electronFlags;
967 >      //only apply SFs if we've cut on this object
968 >      if(find(objectsToCut.begin(),objectsToCut.end(),"electrons") != objectsToCut.end ()){
969 >        flagPair electronFlags;
970 >        //get the last valid flags in the flag map
971          for (int i = cumulativeFlags.at("electrons").size() - 1; i >= 0; i--){
972            if (cumulativeFlags.at("electrons").at(i).size()){
973              electronFlags = cumulativeFlags.at("electrons").at(i);
974              break;
975            }
976          }
977 +        //apply the weight for each of those objects
978          for (uint electronIndex = 0; electronIndex != electronFlags.size(); electronIndex++){
979 <          if(!electronFlags.at(electronIndex)) continue;
979 >          if(!electronFlags.at(electronIndex).second) continue;
980            electronScaleFactor_ *= electronSFWeight_->at (electrons->at(electronIndex).eta, electrons->at(electronIndex).pt);
981          }
982        }
983      }
984      if(applyBtagSF_ && datasetType_ != "data"){
985 <     if(cumulativeFlags.find ("jets") != cumulativeFlags.end ()){
986 <        vector<bool> jetFlags;        
985 >      //only apply SFs if we've cut on this object
986 >      if(find(objectsToCut.begin(),objectsToCut.end(),"jets") != objectsToCut.end ()){
987 >        flagPair jetFlags;
988          vector<double> jetSFs;
989 +        //get the last valid flags in the flag map
990          for (int i = cumulativeFlags.at("jets").size() - 1; i >= 0; i--){
991 <          if (cumulativeFlags.at("jets").at(i).size()){            
991 >          if (cumulativeFlags.at("jets").at(i).size()){
992              jetFlags = cumulativeFlags.at("jets").at(i);
993 <            break;          
993 >            break;
994            }
995 <        }        
995 >        }
996 >        //apply the weight for each of those objects
997          for (uint jetIndex = 0; jetIndex != jetFlags.size(); jetIndex++){
998 <          if(!jetFlags.at(jetIndex)) continue;          
999 <          double jetSFTmp = bTagSFWeight_->sflookup(jets->at(jetIndex).btagCombinedSecVertex, jets->at(jetIndex).pt);
998 >          if(!jetFlags.at(jetIndex).second) continue;
999 >          double jetSFTmp = bTagSFWeight_->sflookup(jets->at(jetIndex).btagCombinedSecVertex, jets->at(jetIndex).pt, jets->at(jetIndex).flavour, jets->at(jetIndex).eta);
1000            jetSFs.push_back(jetSFTmp);
1001          }
1002 <        bTagScaleFactor_ *= bTagSFWeight_->weight( jetSFs, minBtag_, maxBtag_ );    
1002 >        bTagScaleFactor_ *= bTagSFWeight_->weight( jetSFs, minBtag_);
1003        }
1004      }
1005      scaleFactor *= muonScaleFactor_;
# Line 882 | Line 1007 | OSUAnalysis::analyze (const edm::Event &
1007      scaleFactor *= bTagScaleFactor_;
1008      cutFlows_.at(currentChannelIndex)->fillCutFlow(scaleFactor);
1009  
1010 <    if (printEventInfo_) {
1010 >    if (printEventInfo_ && eventPassedAllCuts) {
1011        // Write information about event to screen, for testing purposes.
1012 <      cout << "Event passed all cuts in channel " <<  currentChannel.name
1013 <           << ": run="  << events->at(0).run
1014 <           << "  lumi=" << events->at(0).lumi
1015 <           << "  event=" << events->at(0).evt
1012 >      clog << "Event passed all cuts in channel " <<  currentChannel.name
1013 >           << ":  run:lumi:evt=  "  << events->at(0).run
1014 >           << ":" << events->at(0).lumi
1015 >           << ":" << events->at(0).evt
1016             << endl;
1017 +      if (findEventsLog) {
1018 +        (*findEventsLog) << events->at(0).run
1019 +                         << ":" << events->at(0).lumi
1020 +                         << ":" << events->at(0).evt << endl;
1021 +      }
1022 +
1023      }
1024  
1025  
# Line 897 | Line 1028 | OSUAnalysis::analyze (const edm::Event &
1028        uint currentDir;
1029        if (!GetPlotsAfterEachCut_) { currentDir =  currentChannel.cuts.size() - oneDHists_.at(currentChannelIndex).size(); } //if GetPlotsAfterEachCut_ is false, set currentDir point to the last cut.
1030        else{
1031 <        currentDir = currentCut;
1031 >        currentDir = currentCut;
1032        }
1033 +
1034 +
1035        if(eventPassedPreviousCuts.at(currentDir)){
1036  
904 –        // Assign BNTree variables
905 –        for (uint iBranch = 0; iBranch != treeBranches_.size(); iBranch++) {
906 –          BranchSpecs brSpecs = treeBranches_.at(iBranch);  
907 –          string coll = brSpecs.inputCollection;  
908 –          if (cumulativeFlags.count(coll) == 0) cout << "Error: no flags found for collection:  " << coll << ", will cause a seg fault" << endl;
909 –
910 –          if     (coll == "jets")                assignTreeBranch(brSpecs,jets.product(),          cumulativeFlags.at(coll).at(currentDir));            
911 –          else if(coll == "secondary jets")      assignTreeBranch(brSpecs,jets.product(),          cumulativeFlags.at(coll).at(currentDir));
912 –          else if(coll == "muons")               assignTreeBranch(brSpecs,muons.product(),         cumulativeFlags.at(coll).at(currentDir));        
913 –          else if(coll == "secondary muons")     assignTreeBranch(brSpecs,muons.product(),         cumulativeFlags.at(coll).at(currentDir));
914 –          else if(coll == "electrons")           assignTreeBranch(brSpecs,electrons.product(),     cumulativeFlags.at(coll).at(currentDir));
915 –          else if(coll == "secondary electrons") assignTreeBranch(brSpecs,electrons.product(),     cumulativeFlags.at(coll).at(currentDir));
916 –          else if(coll == "events")              assignTreeBranch(brSpecs,events.product(),        cumulativeFlags.at(coll).at(currentDir));
917 –          else if(coll == "taus")                assignTreeBranch(brSpecs,taus.product(),          cumulativeFlags.at(coll).at(currentDir));
918 –          else if(coll == "mets")                assignTreeBranch(brSpecs,mets.product(),          cumulativeFlags.at(coll).at(currentDir));
919 –          else if(coll == "tracks")              assignTreeBranch(brSpecs,tracks.product(),        cumulativeFlags.at(coll).at(currentDir));
920 –          else if(coll == "genjets")             assignTreeBranch(brSpecs,genjets.product(),       cumulativeFlags.at(coll).at(currentDir));
921 –          else if(coll == "mcparticles")         assignTreeBranch(brSpecs,mcparticles.product(),   cumulativeFlags.at(coll).at(currentDir));
922 –          else if(coll == "primaryvertexs")      assignTreeBranch(brSpecs,primaryvertexs.product(),cumulativeFlags.at(coll).at(currentDir));
923 –          else if(coll == "bxlumis")             assignTreeBranch(brSpecs,bxlumis.product(),       cumulativeFlags.at(coll).at(currentDir));
924 –          else if(coll == "photons")             assignTreeBranch(brSpecs,photons.product(),       cumulativeFlags.at(coll).at(currentDir));
925 –          else if(coll == "superclusters")       assignTreeBranch(brSpecs,superclusters.product(), cumulativeFlags.at(coll).at(currentDir));
926 –          else if(coll == "trigobjs")            assignTreeBranch(brSpecs,trigobjs.product(),      cumulativeFlags.at(coll).at(currentDir));
927 –          else if(coll == "stops"
928 –                  && datasetType_ == "signalMC") assignTreeBranch(brSpecs,stops.product(),         cumulativeFlags.at(coll).at(currentDir));
929 –        } // end loop over branches  
930 –                                                                                          
1037          for (uint histogramIndex = 0; histogramIndex != histograms.size(); histogramIndex++){
1038            histogram currentHistogram = histograms.at(histogramIndex);
1039  
1040 <          if (cumulativeFlags.count(currentHistogram.inputCollection) == 0) cout << "Error: no flags found for collection:  " << currentHistogram.inputCollection << ", will cause a seg fault" << endl;
1040 >          if (cumulativeFlags.count(currentHistogram.inputCollection) == 0) clog << "Error: no flags found for collection:  " << currentHistogram.inputCollection << ", will cause a seg fault" << endl;
1041  
1042 <          if(currentHistogram.inputVariables.size() == 1){
1043 <            TH1D* histo;  
1044 <            histo = oneDHists_.at(currentChannelIndex).at(currentCut).at(currentHistogram.name);
1045 <            if     (currentHistogram.inputCollection == "jets")            fill1DHistogram(histo,currentHistogram,jets.product(),cumulativeFlags.at("jets").at(currentDir),scaleFactor);
1046 <            else if(currentHistogram.inputCollection == "secondary jets")  fill1DHistogram(histo,currentHistogram,jets.product(),cumulativeFlags.at("secondary jets").at(currentDir),scaleFactor);
1047 <            else if(currentHistogram.inputCollection == "muons")           fill1DHistogram(histo,currentHistogram,muons.product(),cumulativeFlags.at("muons").at(currentDir),scaleFactor);
1048 <            else if(currentHistogram.inputCollection == "secondary muons") fill1DHistogram(histo,currentHistogram,muons.product(),cumulativeFlags.at("secondary muons").at(currentDir),scaleFactor);
1049 <            else if(currentHistogram.inputCollection == "secondary electrons") fill1DHistogram(histo,currentHistogram,electrons.product(),cumulativeFlags.at("secondary electrons").at(currentDir),scaleFactor);
1050 <            else if(currentHistogram.inputCollection == "muon-muon pairs") fill1DHistogram(histo,currentHistogram,muons.product(),muons.product(), \
1051 <                                                                                           cumulativeFlags.at("muons").at(currentDir),cumulativeFlags.at("muons").at(currentDir), \
1052 <                                                                                           cumulativeFlags.at("muon-muon pairs").at(currentDir),scaleFactor);
1053 <            else if(currentHistogram.inputCollection == "muon-secondary muon pairs") fill1DHistogram(histo,currentHistogram,muons.product(),muons.product(), \
1054 <                                                                                                     cumulativeFlags.at("muons").at(currentDir),cumulativeFlags.at("secondary muons").at(currentDir), \
1055 <                                                                                                     cumulativeFlags.at("muon-secondary muon pairs").at(currentDir),scaleFactor);
1056 <            else if(currentHistogram.inputCollection == "electrons") fill1DHistogram(histo,currentHistogram,electrons.product(),cumulativeFlags.at("electrons").at(currentDir),scaleFactor);
1057 <            else if(currentHistogram.inputCollection == "electron-electron pairs") fill1DHistogram(histo,currentHistogram,electrons.product(),electrons.product(),\
1058 <                                                                                                   cumulativeFlags.at("electrons").at(currentDir),cumulativeFlags.at("electrons").at(currentDir),\
1059 <                                                                                                   cumulativeFlags.at("electron-electron pairs").at(currentDir),scaleFactor);
1060 <            else if(currentHistogram.inputCollection == "jet-jet pairs") fill1DHistogram(histo,currentHistogram,jets.product(),jets.product(),\
1061 <                                                                                         cumulativeFlags.at("jets").at(currentDir),cumulativeFlags.at("jets").at(currentDir),\
1062 <                                                                                         cumulativeFlags.at("jet-jet pairs").at(currentDir),scaleFactor);
1063 <            else if(currentHistogram.inputCollection == "electron-secondary electron pairs") fill1DHistogram(histo,currentHistogram,electrons.product(),electrons.product(), \
1064 <                                                                                                             cumulativeFlags.at("electrons").at(currentDir),cumulativeFlags.at("secondary electrons").at(currentDir), \
1065 <                                                                                                             cumulativeFlags.at("electron-secondary electron pairs").at(currentDir),scaleFactor);
1066 <            else if(currentHistogram.inputCollection == "electron-muon pairs") fill1DHistogram(histo,currentHistogram, electrons.product(),muons.product(), \
1067 <                                                                                               cumulativeFlags.at("electrons").at(currentDir),cumulativeFlags.at("muons").at(currentDir),
1068 <                                                                                               cumulativeFlags.at("electron-muon pairs").at(currentDir),scaleFactor);
1069 <            else if(currentHistogram.inputCollection == "electron-jet pairs") fill1DHistogram(histo,currentHistogram, electrons.product(),jets.product(), \
1070 <                                                                                              cumulativeFlags.at("electrons").at(currentDir),cumulativeFlags.at("jets").at(currentDir),
1071 <                                                                                              cumulativeFlags.at("electron-jet pairs").at(currentDir),scaleFactor);
1072 <            else if(currentHistogram.inputCollection == "muon-jet pairs") fill1DHistogram(histo,currentHistogram, muons.product(),jets.product(), \
1073 <                                                                                          cumulativeFlags.at("muons").at(currentDir),cumulativeFlags.at("jets").at(currentDir),
1074 <                                                                                          cumulativeFlags.at("muon-jet pairs").at(currentDir),scaleFactor);
1075 <            else if(currentHistogram.inputCollection == "electron-track pairs") fill1DHistogram(histo,currentHistogram, electrons.product(),tracks.product(),
1076 <                                                                                                cumulativeFlags.at("electrons").at(currentDir),cumulativeFlags.at("tracks").at(currentDir),
1077 <                                                                                                cumulativeFlags.at("electron-track pairs").at(currentDir),scaleFactor);
1078 <            else if(currentHistogram.inputCollection == "muon-track pairs") fill1DHistogram(histo,currentHistogram, muons.product(),tracks.product(),
1079 <                                                                                            cumulativeFlags.at("muons").at(currentDir),cumulativeFlags.at("tracks").at(currentDir),
1080 <                                                                                            cumulativeFlags.at("muon-track pairs").at(currentDir),scaleFactor);
1081 <            else if(currentHistogram.inputCollection == "muon-tau pairs") fill1DHistogram(histo,currentHistogram, muons.product(),taus.product(),
1082 <                                                                                          cumulativeFlags.at("muons").at(currentDir),cumulativeFlags.at("taus").at(currentDir),
1083 <                                                                                          cumulativeFlags.at("muon-tau pairs").at(currentDir),scaleFactor);
1084 <            else if(currentHistogram.inputCollection == "tau-tau pairs") fill1DHistogram(histo,currentHistogram, taus.product(),taus.product(),
1085 <                                                                                         cumulativeFlags.at("taus").at(currentDir),cumulativeFlags.at("taus").at(currentDir),
1086 <                                                                                         cumulativeFlags.at("tau-tau pairs").at(currentDir),scaleFactor);
1087 <            else if(currentHistogram.inputCollection == "tau-track pairs") fill1DHistogram(histo,currentHistogram, taus.product(),tracks.product(),
1088 <                                                                                           cumulativeFlags.at("taus").at(currentDir),cumulativeFlags.at("tracks").at(currentDir),
1089 <                                                                                           cumulativeFlags.at("tau-track pairs").at(currentDir),scaleFactor);
1090 <            else if(currentHistogram.inputCollection == "electron-trigobj pairs") fill1DHistogram(histo,currentHistogram, electrons.product(),trigobjs.product(),
1091 <                                                                                                  cumulativeFlags.at("electrons").at(currentDir),cumulativeFlags.at("trigobjs").at(currentDir),
1092 <                                                                                                  cumulativeFlags.at("electron-trigobj pairs").at(currentDir),scaleFactor);
1093 <            else if(currentHistogram.inputCollection == "muon-trigobj pairs") fill1DHistogram(histo,currentHistogram, muons.product(),trigobjs.product(),
1094 <                                                                                              cumulativeFlags.at("muons").at(currentDir),cumulativeFlags.at("trigobjs").at(currentDir),
1095 <                                                                                              cumulativeFlags.at("muon-trigobj pairs").at(currentDir),scaleFactor);
1096 <
1097 <            else if(currentHistogram.inputCollection == "events") fill1DHistogram(histo,currentHistogram,events.product(),cumulativeFlags.at("events").at(currentDir),scaleFactor);
1098 <            else if(currentHistogram.inputCollection == "taus") fill1DHistogram(histo,currentHistogram,taus.product(),cumulativeFlags.at("taus").at(currentDir),scaleFactor);
1099 <            else if(currentHistogram.inputCollection == "mets") fill1DHistogram(histo,currentHistogram,mets.product(),cumulativeFlags.at("mets").at(currentDir),scaleFactor);
1100 <            else if(currentHistogram.inputCollection == "tracks") fill1DHistogram(histo,currentHistogram,tracks.product(),cumulativeFlags.at("tracks").at(currentDir),scaleFactor);
1101 <            else if(currentHistogram.inputCollection == "genjets") fill1DHistogram(histo,currentHistogram,genjets.product(),cumulativeFlags.at("genjets").at(currentDir),scaleFactor);
1102 <            else if(currentHistogram.inputCollection == "mcparticles") fill1DHistogram(histo,currentHistogram,mcparticles.product(),cumulativeFlags.at("mcparticles").at(currentDir),scaleFactor);
1103 <            else if(currentHistogram.inputCollection == "primaryvertexs") fill1DHistogram(histo,currentHistogram,primaryvertexs.product(),cumulativeFlags.at("primaryvertexs").at(currentDir),scaleFactor);
1104 <            else if(currentHistogram.inputCollection == "bxlumis") fill1DHistogram(histo,currentHistogram,bxlumis.product(),cumulativeFlags.at("bxlumis").at(currentDir),scaleFactor);
1105 <            else if(currentHistogram.inputCollection == "photons") fill1DHistogram(histo,currentHistogram,photons.product(),cumulativeFlags.at("photons").at(currentDir),scaleFactor);
1106 <            else if(currentHistogram.inputCollection == "superclusters") fill1DHistogram(histo,currentHistogram,superclusters.product(),cumulativeFlags.at("superclusters").at(currentDir),scaleFactor);
1107 <            else if(currentHistogram.inputCollection == "trigobjs") fill1DHistogram(histo,currentHistogram,trigobjs.product(),cumulativeFlags.at("trigobjs").at(currentDir),scaleFactor);
1108 <            else if(currentHistogram.inputCollection == "stops" && datasetType_ == "signalMC") fill1DHistogram(histo,currentHistogram,stops.product(),cumulativeFlags.at("stops").at(currentDir),scaleFactor);
1109 <          }
1110 <          else if(currentHistogram.inputVariables.size() == 2){
1111 <            TH2D* histo;
1112 <            histo = twoDHists_.at(currentChannelIndex).at(currentCut).at(currentHistogram.name);
1113 <            if     (currentHistogram.inputCollection == "jets")            fill2DHistogram(histo,currentHistogram,jets.product(),cumulativeFlags.at("jets").at(currentDir),scaleFactor);
1114 <            else if(currentHistogram.inputCollection == "secondary jets")  fill2DHistogram(histo,currentHistogram,jets.product(),cumulativeFlags.at("secondary jets").at(currentDir),scaleFactor);
1115 <            else if(currentHistogram.inputCollection == "muons")           fill2DHistogram(histo,currentHistogram,muons.product(),cumulativeFlags.at("muons").at(currentDir),scaleFactor);
1116 <            else if(currentHistogram.inputCollection == "secondary muons") fill2DHistogram(histo,currentHistogram,muons.product(),cumulativeFlags.at("secondary muons").at(currentDir),scaleFactor);
1117 <            else if(currentHistogram.inputCollection == "muon-muon pairs") fill2DHistogram(histo,currentHistogram,muons.product(),muons.product(), \
1118 <                                                                                           cumulativeFlags.at("muons").at(currentDir),cumulativeFlags.at("muons").at(currentDir), \
1119 <                                                                                           cumulativeFlags.at("muon-muon pairs").at(currentDir),scaleFactor);
1120 <            else if(currentHistogram.inputCollection == "muon-secondary muon pairs") fill2DHistogram(histo,currentHistogram,muons.product(),muons.product(), \
1121 <                                                                                                     cumulativeFlags.at("muons").at(currentDir),cumulativeFlags.at("secondary muons").at(currentDir), \
1122 <                                                                                                     cumulativeFlags.at("muon-secondary muon pairs").at(currentDir),scaleFactor);
1123 <            else if(currentHistogram.inputCollection == "electrons") fill2DHistogram(histo,currentHistogram,electrons.product(),cumulativeFlags.at("electrons").at(currentDir),scaleFactor);
1124 <            else if(currentHistogram.inputCollection == "secondary electrons") fill2DHistogram(histo,currentHistogram,electrons.product(),cumulativeFlags.at("secondary electrons").at(currentDir),scaleFactor);
1125 <            else if(currentHistogram.inputCollection == "electron-electron pairs") fill2DHistogram(histo,currentHistogram,electrons.product(),electrons.product(), \
1126 <                                                                                                   cumulativeFlags.at("electrons").at(currentDir),cumulativeFlags.at("electrons").at(currentDir), \
1127 <                                                                                                   cumulativeFlags.at("electron-electron pairs").at(currentDir),scaleFactor);
1128 <            else if(currentHistogram.inputCollection == "jet-jet pairs") fill2DHistogram(histo,currentHistogram,jets.product(),jets.product(), \
1129 <                                                                                         cumulativeFlags.at("jets").at(currentDir),cumulativeFlags.at("jets").at(currentDir), \
1130 <                                                                                         cumulativeFlags.at("jet-jet pairs").at(currentDir),scaleFactor);
1131 <            else if(currentHistogram.inputCollection == "electron-secondary electron pairs") fill2DHistogram(histo,currentHistogram,electrons.product(),electrons.product(), \
1132 <                                                                                                             cumulativeFlags.at("electrons").at(currentDir),cumulativeFlags.at("secondary electrons").at(currentDir), \
1133 <                                                                                                             cumulativeFlags.at("electron-secondary electron pairs").at(currentDir),scaleFactor);
1134 <            else if(currentHistogram.inputCollection == "electron-muon pairs") fill2DHistogram(histo,currentHistogram,electrons.product(),muons.product(), \
1135 <                                                                                               cumulativeFlags.at("electrons").at(currentDir),cumulativeFlags.at("muons").at(currentDir), \
1136 <                                                                                               cumulativeFlags.at("electron-muon pairs").at(currentDir),scaleFactor);
1137 <            else if(currentHistogram.inputCollection == "electron-jet pairs") fill2DHistogram(histo,currentHistogram,electrons.product(),jets.product(), \
1138 <                                                                                              cumulativeFlags.at("electrons").at(currentDir),cumulativeFlags.at("jets").at(currentDir), \
1139 <                                                                                              cumulativeFlags.at("electron-jet pairs").at(currentDir),scaleFactor);
1140 <            else if(currentHistogram.inputCollection == "muon-jet pairs") fill2DHistogram(histo,currentHistogram,muons.product(),jets.product(), \
1141 <                                                                                          cumulativeFlags.at("muons").at(currentDir),cumulativeFlags.at("jets").at(currentDir), \
1142 <                                                                                          cumulativeFlags.at("muon-jet pairs").at(currentDir),scaleFactor);
1143 <            else if(currentHistogram.inputCollection == "electron-track pairs") fill2DHistogram(histo,currentHistogram,electrons.product(),tracks.product(),
1144 <                                                                                                cumulativeFlags.at("electrons").at(currentDir),cumulativeFlags.at("tracks").at(currentDir),
1145 <                                                                                                cumulativeFlags.at("electron-track pairs").at(currentDir),scaleFactor);
1146 <            else if(currentHistogram.inputCollection == "muon-track pairs") fill2DHistogram(histo,currentHistogram,muons.product(),tracks.product(),
1147 <                                                                                            cumulativeFlags.at("muons").at(currentDir),cumulativeFlags.at("tracks").at(currentDir),
1148 <                                                                                            cumulativeFlags.at("muon-track pairs").at(currentDir),scaleFactor);
1149 <            else if(currentHistogram.inputCollection == "muon-tau pairs") fill2DHistogram(histo,currentHistogram,muons.product(),taus.product(),
1150 <                                                                                          cumulativeFlags.at("muons").at(currentDir),cumulativeFlags.at("taus").at(currentDir),
1151 <                                                                                          cumulativeFlags.at("muon-tau pairs").at(currentDir),scaleFactor);
1152 <            else if(currentHistogram.inputCollection == "tau-tau pairs") fill2DHistogram(histo,currentHistogram,taus.product(),taus.product(),
1153 <                                                                                         cumulativeFlags.at("taus").at(currentDir),cumulativeFlags.at("taus").at(currentDir),
1154 <                                                                                         cumulativeFlags.at("tau-tau pairs").at(currentDir),scaleFactor);
1155 <            else if(currentHistogram.inputCollection == "tau-track pairs") fill2DHistogram(histo,currentHistogram,taus.product(),tracks.product(),
1156 <                                                                                           cumulativeFlags.at("taus").at(currentDir),cumulativeFlags.at("tracks").at(currentDir),
1157 <                                                                                           cumulativeFlags.at("tau-track pairs").at(currentDir),scaleFactor);
1158 <            else if(currentHistogram.inputCollection == "electron-trigobj pairs") fill2DHistogram(histo,currentHistogram,electrons.product(),trigobjs.product(),
1159 <                                                                                                  cumulativeFlags.at("electrons").at(currentDir),cumulativeFlags.at("trigobjs").at(currentDir),
1160 <                                                                                                  cumulativeFlags.at("electron-trigobj pairs").at(currentDir),scaleFactor);
1161 <            else if(currentHistogram.inputCollection == "muon-trigobj pairs") fill2DHistogram(histo,currentHistogram,muons.product(),trigobjs.product(),
1162 <                                                                                              cumulativeFlags.at("muons").at(currentDir),cumulativeFlags.at("trigobjs").at(currentDir),
1163 <                                                                                              cumulativeFlags.at("muon-trigobj pairs").at(currentDir),scaleFactor);
1164 <            else if(currentHistogram.inputCollection == "events") fill2DHistogram(histo,currentHistogram,events.product(),cumulativeFlags.at("events").at(currentDir),scaleFactor);
1165 <            else if(currentHistogram.inputCollection == "taus") fill2DHistogram(histo,currentHistogram,taus.product(),cumulativeFlags.at("taus").at(currentDir),scaleFactor);
1166 <            else if(currentHistogram.inputCollection == "mets") fill2DHistogram(histo,currentHistogram,mets.product(),cumulativeFlags.at("mets").at(currentDir),scaleFactor);
1167 <            else if(currentHistogram.inputCollection == "tracks") fill2DHistogram(histo,currentHistogram,tracks.product(),cumulativeFlags.at("tracks").at(currentDir),scaleFactor);
1168 <            else if(currentHistogram.inputCollection == "track-event pairs") fill2DHistogram(histo,currentHistogram,tracks.product(),events.product(),
1169 <                                                                                             cumulativeFlags.at("tracks").at(currentDir),cumulativeFlags.at("events").at(currentDir),
1170 <                                                                                             cumulativeFlags.at("track-event pairs").at(currentDir),scaleFactor);
1171 <            else if(currentHistogram.inputCollection == "genjets") fill2DHistogram(histo,currentHistogram,genjets.product(),cumulativeFlags.at("genjets").at(currentDir),scaleFactor);
1172 <            else if(currentHistogram.inputCollection == "mcparticles") fill2DHistogram(histo,currentHistogram,mcparticles.product(),cumulativeFlags.at("mcparticles").at(currentDir),scaleFactor);
1173 <            else if(currentHistogram.inputCollection == "primaryvertexs") fill2DHistogram(histo,currentHistogram,primaryvertexs.product(),cumulativeFlags.at("primaryvertexs").at(currentDir),scaleFactor);
1174 <            else if(currentHistogram.inputCollection == "bxlumis") fill2DHistogram(histo,currentHistogram,bxlumis.product(),cumulativeFlags.at("bxlumis").at(currentDir),scaleFactor);
1175 <            else if(currentHistogram.inputCollection == "photons") fill2DHistogram(histo,currentHistogram,photons.product(),cumulativeFlags.at("photons").at(currentDir),scaleFactor);
1176 <            else if(currentHistogram.inputCollection == "superclusters") fill2DHistogram(histo,currentHistogram,superclusters.product(),cumulativeFlags.at("superclusters").at(currentDir),scaleFactor);
1177 <            else if(currentHistogram.inputCollection == "trigobjs") fill2DHistogram(histo,currentHistogram,trigobjs.product(),cumulativeFlags.at("trigobjs").at(currentDir),scaleFactor);
1178 <            else if(currentHistogram.inputCollection == "stops" && datasetType_ == "signalMC") fill2DHistogram(histo,currentHistogram,stops.product(),cumulativeFlags.at("stops").at(currentDir),scaleFactor);
1179 <          }
1180 <          
1181 <        }
1182 <
1183 <
1184 <        //fills histograms with the sizes of collections
1185 <        for (uint currentObjectIndex = 0; currentObjectIndex != objectsToPlot.size(); currentObjectIndex++){
1186 <
1187 <          string currentObject = objectsToPlot.at(currentObjectIndex);
1188 <          string objectToPlot = "";
1189 <
1190 <          // Name of objectToPlot here must match the name specified in OSUAnalysis::OSUAnalysis().
1191 <          if(currentObject == "muon-muon pairs")                         objectToPlot = "dimuonPairs";
1192 <          else if(currentObject == "electron-electron pairs")            objectToPlot = "dielectronPairs";
1193 <          else if(currentObject == "electron-muon pairs")                objectToPlot = "electronMuonPairs";
1194 <          else if(currentObject == "electron-jet pairs")                 objectToPlot = "electronJetPairs";
1195 <          else if(currentObject == "muon-jet pairs")                     objectToPlot = "muonJetPairs";
1196 <          else if(currentObject == "jet-jet pairs")                      objectToPlot = "dijetPairs";
1197 <          else if(currentObject == "secondary jets")                     objectToPlot = "secondaryJets";
1198 <          else if(currentObject == "electron-track pairs")               objectToPlot = "electronTrackPairs";
1199 <          else if(currentObject == "muon-track pairs")                   objectToPlot = "muonTrackPairs";
1200 <          else if(currentObject == "muon-tau pairs")                     objectToPlot = "muonTauPairs";
1201 <          else if(currentObject == "tau-tau pairs")                      objectToPlot = "ditauPairs";
1202 <          else if(currentObject == "tau-track pairs")                    objectToPlot = "tauTrackPairs";
1203 <          else if(currentObject == "track-event pairs")                  objectToPlot = "trackEventPairs";
1204 <          else if(currentObject == "muon-secondary muon pairs")          objectToPlot = "muonSecondaryMuonPairs";
1205 <          else if(currentObject == "secondary muons")                    objectToPlot = "secondaryMuons";
1206 <          else if(currentObject == "electron-secondary electron pairs")  objectToPlot = "electronSecondaryElectronPairs";
1207 <          else if(currentObject == "secondary electrons")                objectToPlot = "secondaryElectrons";
1208 <          else if(currentObject == "electron-trigobj pairs")             objectToPlot = "electronTrigobjPairs";
1209 <          else if(currentObject == "muon-trigobj pairs")                 objectToPlot = "muonTrigobjPairs";
1210 <          else objectToPlot = currentObject;
1211 <
1212 <          string tempCurrentObject = objectToPlot;
1213 <          tempCurrentObject.at(0) = toupper(tempCurrentObject.at(0));
1214 <          string histoName = "num" + tempCurrentObject;
1215 <
1216 <          //set position of primary vertex in event, in order to calculate quantities relative to it
1217 <          if(find(objectsToCut.begin(), objectsToCut.end(), currentObject) != objectsToCut.end()) {
1218 <            vector<bool> lastCutFlags = cumulativeFlags.at(currentObject).at(currentDir);
1219 <            int numToPlot = 0;
1220 <            for (uint currentFlag = 0; currentFlag != lastCutFlags.size(); currentFlag++){
1221 <              if(lastCutFlags.at(currentFlag)) numToPlot++;
1222 <            }
1223 <            if(objectToPlot == "primaryvertexs"){
1224 <              oneDHists_.at(currentChannelIndex).at(currentCut).at(histoName+"BeforePileupCorrection")->Fill(primaryvertexs->size());
1225 <              oneDHists_.at(currentChannelIndex).at(currentCut).at(histoName+"AfterPileupCorrection")->Fill(primaryvertexs->size(),scaleFactor);
1226 <            }
1227 <            else {
1228 <              oneDHists_.at(currentChannelIndex).at(currentCut).at(histoName)->Fill(numToPlot,scaleFactor);
1229 <            }
1230 <          }
1231 <        } // end for (uint currentObjectIndex = 0; currentObjectIndex != objectsToPlot.size(); currentObjectIndex++)
1232 <        
1233 <        if (!BNTrees_.at(currentChannelIndex)) { cout << "ERROR:  Undefined BNTree.  Will likely seg fault." << endl; }  
1234 <        BNTrees_.at(currentChannelIndex)->Fill();  // only fill if event has passed cuts  
1235 <
1236 <      } // end if(eventPassedPreviousCuts.at(currentDir)){
1237 <    } // end loop over cuts
1238 <    
1239 <  } // end loop over channel
1042 >          if(currentHistogram.inputVariables.size() == 1){
1043 >            TH1D* histo;
1044 >            histo = oneDHists_.at(currentChannelIndex).at(currentCut).at(currentHistogram.name);
1045 >            if     (currentHistogram.inputCollection == "jets")            fill1DHistogram(histo,currentHistogram,jets.product(),cumulativeFlags.at("jets").at(currentDir),scaleFactor);
1046 >            else if(currentHistogram.inputCollection == "secondary jets")  fill1DHistogram(histo,currentHistogram,jets.product(),cumulativeFlags.at("secondary jets").at(currentDir),scaleFactor);
1047 >            else if(currentHistogram.inputCollection == "secondary photons")  fill1DHistogram(histo,currentHistogram,photons.product(),cumulativeFlags.at("secondary photons").at(currentDir),scaleFactor);
1048 >            else if(currentHistogram.inputCollection == "muons")           fill1DHistogram(histo,currentHistogram,muons.product(),cumulativeFlags.at("muons").at(currentDir),scaleFactor);
1049 >            else if(currentHistogram.inputCollection == "secondary muons") fill1DHistogram(histo,currentHistogram,muons.product(),cumulativeFlags.at("secondary muons").at(currentDir),scaleFactor);
1050 >            else if(currentHistogram.inputCollection == "secondary electrons") fill1DHistogram(histo,currentHistogram,electrons.product(),cumulativeFlags.at("secondary electrons").at(currentDir),scaleFactor);
1051 >            else if(currentHistogram.inputCollection == "muon-muon pairs") fill1DHistogram(histo,currentHistogram,muons.product(),muons.product(), \
1052 >                                                                                           cumulativeFlags.at("muons").at(currentDir),cumulativeFlags.at("muons").at(currentDir), \
1053 >                                                                                           cumulativeFlags.at("muon-muon pairs").at(currentDir),scaleFactor);
1054 >            else if(currentHistogram.inputCollection == "muon-secondary muon pairs") fill1DHistogram(histo,currentHistogram,muons.product(),muons.product(), \
1055 >                                                                                                     cumulativeFlags.at("muons").at(currentDir),cumulativeFlags.at("secondary muons").at(currentDir), \
1056 >                                                                                                     cumulativeFlags.at("muon-secondary muon pairs").at(currentDir),scaleFactor);
1057 >             else if(currentHistogram.inputCollection == "muon-secondary photon pairs") fill1DHistogram(histo,currentHistogram,muons.product(),photons.product(), \
1058 >                                                                                                     cumulativeFlags.at("muons").at(currentDir),cumulativeFlags.at("secondary photons").at(currentDir), \
1059 >                                                                                                     cumulativeFlags.at("muon-secondary photon pairs").at(currentDir),scaleFactor);
1060 >             else if(currentHistogram.inputCollection == "muon-secondary jet pairs") fill1DHistogram(histo,currentHistogram,muons.product(),jets.product(), \
1061 >                                                                                                     cumulativeFlags.at("muons").at(currentDir),cumulativeFlags.at("secondary jets").at(currentDir), \
1062 >                                                                                                     cumulativeFlags.at("muon-secondary jet pairs").at(currentDir),scaleFactor);
1063 >             else if(currentHistogram.inputCollection == "photon-secondary jet pairs") fill1DHistogram(histo,currentHistogram,photons.product(),jets.product(), \
1064 >                                                                                                     cumulativeFlags.at("photons").at(currentDir),cumulativeFlags.at("secondary jets").at(currentDir), \
1065 >                                                                                                     cumulativeFlags.at("photon-secondary jet pairs").at(currentDir),scaleFactor);
1066 >             else if(currentHistogram.inputCollection == "electron-secondary jet pairs") fill1DHistogram(histo,currentHistogram,electrons.product(),jets.product(), \
1067 >                                                                                                     cumulativeFlags.at("electrons").at(currentDir),cumulativeFlags.at("secondary jets").at(currentDir), \
1068 >                                                                                                     cumulativeFlags.at("electron-secondary jet pairs").at(currentDir),scaleFactor);
1069 >
1070 >            else if(currentHistogram.inputCollection == "electrons") fill1DHistogram(histo,currentHistogram,electrons.product(),cumulativeFlags.at("electrons").at(currentDir),scaleFactor);
1071 >            else if(currentHistogram.inputCollection == "electron-electron pairs") fill1DHistogram(histo,currentHistogram,electrons.product(),electrons.product(),\
1072 >                                                                                                   cumulativeFlags.at("electrons").at(currentDir),cumulativeFlags.at("electrons").at(currentDir),\
1073 >                                                                                                   cumulativeFlags.at("electron-electron pairs").at(currentDir),scaleFactor);
1074 >            else if(currentHistogram.inputCollection == "jet-jet pairs") fill1DHistogram(histo,currentHistogram,jets.product(),jets.product(),\
1075 >                                                                                         cumulativeFlags.at("jets").at(currentDir),cumulativeFlags.at("jets").at(currentDir),\
1076 >                                                                                         cumulativeFlags.at("jet-jet pairs").at(currentDir),scaleFactor);
1077 >             else if(currentHistogram.inputCollection == "jet-secondary jet pairs") fill1DHistogram(histo,currentHistogram,jets.product(),jets.product(), \
1078 >                                                                                                     cumulativeFlags.at("jets").at(currentDir),cumulativeFlags.at("secondary jets").at(currentDir), \
1079 >                                                                                                     cumulativeFlags.at("jet-secondary jet pairs").at(currentDir),scaleFactor);
1080 >
1081 >            else if(currentHistogram.inputCollection == "electron-secondary electron pairs") fill1DHistogram(histo,currentHistogram,electrons.product(),electrons.product(), \
1082 >                                                                                                             cumulativeFlags.at("electrons").at(currentDir),cumulativeFlags.at("secondary electrons").at(currentDir), \
1083 >                                                                                                             cumulativeFlags.at("electron-secondary electron pairs").at(currentDir),scaleFactor);
1084 >            else if(currentHistogram.inputCollection == "electron-muon pairs") fill1DHistogram(histo,currentHistogram, electrons.product(),muons.product(), \
1085 >                                                                                               cumulativeFlags.at("electrons").at(currentDir),cumulativeFlags.at("muons").at(currentDir),
1086 >                                                                                               cumulativeFlags.at("electron-muon pairs").at(currentDir),scaleFactor);
1087 >            else if(currentHistogram.inputCollection == "electron-jet pairs") fill1DHistogram(histo,currentHistogram, electrons.product(),jets.product(), \
1088 >                                                                                              cumulativeFlags.at("electrons").at(currentDir),cumulativeFlags.at("jets").at(currentDir),
1089 >                                                                                              cumulativeFlags.at("electron-jet pairs").at(currentDir),scaleFactor);
1090 >            else if(currentHistogram.inputCollection == "photon-jet pairs") fill1DHistogram(histo,currentHistogram, photons.product(),jets.product(), \
1091 >                                                                                              cumulativeFlags.at("photons").at(currentDir),cumulativeFlags.at("jets").at(currentDir),
1092 >                                                                                              cumulativeFlags.at("photon-jet pairs").at(currentDir),scaleFactor);
1093 >            else if(currentHistogram.inputCollection == "muon-jet pairs") fill1DHistogram(histo,currentHistogram, muons.product(),jets.product(), \
1094 >                                                                                          cumulativeFlags.at("muons").at(currentDir),cumulativeFlags.at("jets").at(currentDir),
1095 >                                                                                          cumulativeFlags.at("muon-jet pairs").at(currentDir),scaleFactor);
1096 >            else if(currentHistogram.inputCollection == "muon-event pairs") fill1DHistogram(histo,currentHistogram, muons.product(),events.product(), \
1097 >                                                                                          cumulativeFlags.at("muons").at(currentDir),cumulativeFlags.at("events").at(currentDir),
1098 >                                                                                          cumulativeFlags.at("muon-event pairs").at(currentDir),scaleFactor);
1099 >            else if(currentHistogram.inputCollection == "met-jet pairs")  fill1DHistogram(histo,currentHistogram, mets.product(),jets.product(), \
1100 >                                                                                          cumulativeFlags.at("mets").at(currentDir),cumulativeFlags.at("jets").at(currentDir),
1101 >                                                                                          cumulativeFlags.at("met-jet pairs").at(currentDir),scaleFactor);
1102 >            else if(currentHistogram.inputCollection == "track-jet pairs")  fill1DHistogram(histo,currentHistogram,tracks.product(),jets.product(), \
1103 >                                                                                          cumulativeFlags.at("tracks").at(currentDir),cumulativeFlags.at("jets").at(currentDir),
1104 >                                                                                          cumulativeFlags.at("track-jet pairs").at(currentDir),scaleFactor);
1105 >            else if(currentHistogram.inputCollection == "muon-photon pairs") fill1DHistogram(histo,currentHistogram, muons.product(),photons.product(), \
1106 >                                                                                          cumulativeFlags.at("muons").at(currentDir),cumulativeFlags.at("photons").at(currentDir),
1107 >                                                                                          cumulativeFlags.at("muon-photon pairs").at(currentDir),scaleFactor);
1108 >            else if(currentHistogram.inputCollection == "electron-photon pairs") fill1DHistogram(histo,currentHistogram, electrons.product(),photons.product(), \
1109 >                                                                                          cumulativeFlags.at("electrons").at(currentDir),cumulativeFlags.at("photons").at(currentDir),
1110 >                                                                                          cumulativeFlags.at("electron-photon pairs").at(currentDir),scaleFactor);
1111 >            else if(currentHistogram.inputCollection == "electron-track pairs") fill1DHistogram(histo,currentHistogram, electrons.product(),tracks.product(),
1112 >                                                                                                cumulativeFlags.at("electrons").at(currentDir),cumulativeFlags.at("tracks").at(currentDir),
1113 >                                                                                                cumulativeFlags.at("electron-track pairs").at(currentDir),scaleFactor);
1114 >            else if(currentHistogram.inputCollection == "muon-track pairs") fill1DHistogram(histo,currentHistogram, muons.product(),tracks.product(),
1115 >                                                                                            cumulativeFlags.at("muons").at(currentDir),cumulativeFlags.at("tracks").at(currentDir),
1116 >                                                                                            cumulativeFlags.at("muon-track pairs").at(currentDir),scaleFactor);
1117 >            else if(currentHistogram.inputCollection == "muon-tau pairs") fill1DHistogram(histo,currentHistogram, muons.product(),taus.product(),
1118 >                                                                                          cumulativeFlags.at("muons").at(currentDir),cumulativeFlags.at("taus").at(currentDir),
1119 >                                                                                          cumulativeFlags.at("muon-tau pairs").at(currentDir),scaleFactor);
1120 >            else if(currentHistogram.inputCollection == "tau-tau pairs") fill1DHistogram(histo,currentHistogram, taus.product(),taus.product(),
1121 >                                                                                         cumulativeFlags.at("taus").at(currentDir),cumulativeFlags.at("taus").at(currentDir),
1122 >                                                                                         cumulativeFlags.at("tau-tau pairs").at(currentDir),scaleFactor);
1123 >            else if(currentHistogram.inputCollection == "tau-track pairs") fill1DHistogram(histo,currentHistogram, taus.product(),tracks.product(),
1124 >                                                                                           cumulativeFlags.at("taus").at(currentDir),cumulativeFlags.at("tracks").at(currentDir),
1125 >                                                                                           cumulativeFlags.at("tau-track pairs").at(currentDir),scaleFactor);
1126 >            else if(currentHistogram.inputCollection == "electron-trigobj pairs") fill1DHistogram(histo,currentHistogram, electrons.product(),trigobjs.product(),
1127 >                                                                                                  cumulativeFlags.at("electrons").at(currentDir),cumulativeFlags.at("trigobjs").at(currentDir),
1128 >                                                                                                  cumulativeFlags.at("electron-trigobj pairs").at(currentDir),scaleFactor);
1129 >            else if(currentHistogram.inputCollection == "muon-trigobj pairs") fill1DHistogram(histo,currentHistogram, muons.product(),trigobjs.product(),
1130 >                                                                                              cumulativeFlags.at("muons").at(currentDir),cumulativeFlags.at("trigobjs").at(currentDir),
1131 >                                                                                              cumulativeFlags.at("muon-trigobj pairs").at(currentDir),scaleFactor);
1132 >
1133 >            else if(currentHistogram.inputCollection == "events") fill1DHistogram(histo,currentHistogram,events.product(),cumulativeFlags.at("events").at(currentDir),scaleFactor);
1134 >            else if(currentHistogram.inputCollection == "taus") fill1DHistogram(histo,currentHistogram,taus.product(),cumulativeFlags.at("taus").at(currentDir),scaleFactor);
1135 >            else if(currentHistogram.inputCollection == "mets") fill1DHistogram(histo,currentHistogram,mets.product(),cumulativeFlags.at("mets").at(currentDir),scaleFactor);
1136 >            else if(currentHistogram.inputCollection == "tracks") fill1DHistogram(histo,currentHistogram,tracks.product(),cumulativeFlags.at("tracks").at(currentDir),scaleFactor);
1137 >            else if(currentHistogram.inputCollection == "genjets") fill1DHistogram(histo,currentHistogram,genjets.product(),cumulativeFlags.at("genjets").at(currentDir),scaleFactor);
1138 >            else if(currentHistogram.inputCollection == "mcparticles") fill1DHistogram(histo,currentHistogram,mcparticles.product(),cumulativeFlags.at("mcparticles").at(currentDir),scaleFactor);
1139 >            else if(currentHistogram.inputCollection == "primaryvertexs") fill1DHistogram(histo,currentHistogram,primaryvertexs.product(),cumulativeFlags.at("primaryvertexs").at(currentDir),scaleFactor);
1140 >            else if(currentHistogram.inputCollection == "bxlumis") fill1DHistogram(histo,currentHistogram,bxlumis.product(),cumulativeFlags.at("bxlumis").at(currentDir),scaleFactor);
1141 >            else if(currentHistogram.inputCollection == "photons") fill1DHistogram(histo,currentHistogram,photons.product(),cumulativeFlags.at("photons").at(currentDir),scaleFactor);
1142 >            else if(currentHistogram.inputCollection == "superclusters") fill1DHistogram(histo,currentHistogram,superclusters.product(),cumulativeFlags.at("superclusters").at(currentDir),scaleFactor);
1143 >            else if(currentHistogram.inputCollection == "trigobjs") fill1DHistogram(histo,currentHistogram,trigobjs.product(),cumulativeFlags.at("trigobjs").at(currentDir),scaleFactor);
1144 >            else if(currentHistogram.inputCollection == "stops" && datasetType_ == "signalMC") fill1DHistogram(histo,currentHistogram,stops.product(),cumulativeFlags.at("stops").at(currentDir),scaleFactor);
1145 >          }
1146 >          else if(currentHistogram.inputVariables.size() == 2){
1147 >            TH2D* histo;
1148 >            histo = twoDHists_.at(currentChannelIndex).at(currentCut).at(currentHistogram.name);
1149 >            if     (currentHistogram.inputCollection == "jets")            fill2DHistogram(histo,currentHistogram,jets.product(),cumulativeFlags.at("jets").at(currentDir),scaleFactor);
1150 >            else if(currentHistogram.inputCollection == "secondary jets")  fill2DHistogram(histo,currentHistogram,jets.product(),cumulativeFlags.at("secondary jets").at(currentDir),scaleFactor);
1151 >            else if(currentHistogram.inputCollection == "secondary photons")  fill2DHistogram(histo,currentHistogram,photons.product(),cumulativeFlags.at("secondary photons").at(currentDir),scaleFactor);
1152 >            else if(currentHistogram.inputCollection == "muons")           fill2DHistogram(histo,currentHistogram,muons.product(),cumulativeFlags.at("muons").at(currentDir),scaleFactor);
1153 >            else if(currentHistogram.inputCollection == "secondary muons") fill2DHistogram(histo,currentHistogram,muons.product(),cumulativeFlags.at("secondary muons").at(currentDir),scaleFactor);
1154 >            else if(currentHistogram.inputCollection == "muon-muon pairs") fill2DHistogram(histo,currentHistogram,muons.product(),muons.product(), \
1155 >                                                                                           cumulativeFlags.at("muons").at(currentDir),cumulativeFlags.at("muons").at(currentDir), \
1156 >                                                                                           cumulativeFlags.at("muon-muon pairs").at(currentDir),scaleFactor);
1157 >            else if(currentHistogram.inputCollection == "muon-secondary muon pairs") fill2DHistogram(histo,currentHistogram,muons.product(),muons.product(), \
1158 >                                                                                                     cumulativeFlags.at("muons").at(currentDir),cumulativeFlags.at("secondary muons").at(currentDir), \
1159 >                                                                                                     cumulativeFlags.at("muon-secondary muon pairs").at(currentDir),scaleFactor);
1160 >            else if(currentHistogram.inputCollection == "muon-secondary photon pairs") fill2DHistogram(histo,currentHistogram,muons.product(),photons.product(), \
1161 >                                                                                                     cumulativeFlags.at("muons").at(currentDir),cumulativeFlags.at("secondary photons").at(currentDir), \
1162 >                                                                                                     cumulativeFlags.at("muon-secondary photon pairs").at(currentDir),scaleFactor);
1163 >            else if(currentHistogram.inputCollection == "muon-secondary jet pairs") fill2DHistogram(histo,currentHistogram,muons.product(),jets.product(), \
1164 >                                                                                                     cumulativeFlags.at("muons").at(currentDir),cumulativeFlags.at("secondary jets").at(currentDir), \
1165 >                                                                                                     cumulativeFlags.at("muon-secondary jet pairs").at(currentDir),scaleFactor);
1166 >            else if(currentHistogram.inputCollection == "electron-secondary jet pairs") fill2DHistogram(histo,currentHistogram,electrons.product(),jets.product(), \
1167 >                                                                                                     cumulativeFlags.at("electrons").at(currentDir),cumulativeFlags.at("secondary jets").at(currentDir), \
1168 >                                                                                                     cumulativeFlags.at("electron-secondary jet pairs").at(currentDir),scaleFactor);
1169 >            else if(currentHistogram.inputCollection == "photon-secondary jet pairs") fill2DHistogram(histo,currentHistogram,photons.product(),jets.product(), \
1170 >                                                                                                     cumulativeFlags.at("photons").at(currentDir),cumulativeFlags.at("secondary jets").at(currentDir), \
1171 >                                                                                                     cumulativeFlags.at("photon-secondary jet pairs").at(currentDir),scaleFactor);
1172 >            else if(currentHistogram.inputCollection == "electrons") fill2DHistogram(histo,currentHistogram,electrons.product(),cumulativeFlags.at("electrons").at(currentDir),scaleFactor);
1173 >            else if(currentHistogram.inputCollection == "secondary electrons") fill2DHistogram(histo,currentHistogram,electrons.product(),cumulativeFlags.at("secondary electrons").at(currentDir),scaleFactor);
1174 >            else if(currentHistogram.inputCollection == "electron-electron pairs") fill2DHistogram(histo,currentHistogram,electrons.product(),electrons.product(), \
1175 >                                                                                                   cumulativeFlags.at("electrons").at(currentDir),cumulativeFlags.at("electrons").at(currentDir), \
1176 >                                                                                                   cumulativeFlags.at("electron-electron pairs").at(currentDir),scaleFactor);
1177 >            else if(currentHistogram.inputCollection == "jet-jet pairs") fill2DHistogram(histo,currentHistogram,jets.product(),jets.product(), \
1178 >                                                                                         cumulativeFlags.at("jets").at(currentDir),cumulativeFlags.at("jets").at(currentDir), \
1179 >                                                                                         cumulativeFlags.at("jet-jet pairs").at(currentDir),scaleFactor);
1180 >            else if(currentHistogram.inputCollection == "electron-secondary electron pairs") fill2DHistogram(histo,currentHistogram,electrons.product(),electrons.product(), \
1181 >                                                                                                             cumulativeFlags.at("electrons").at(currentDir),cumulativeFlags.at("secondary electrons").at(currentDir), \
1182 >                                                                                                             cumulativeFlags.at("electron-secondary electron pairs").at(currentDir),scaleFactor);
1183 >            else if(currentHistogram.inputCollection == "electron-muon pairs") fill2DHistogram(histo,currentHistogram,electrons.product(),muons.product(), \
1184 >                                                                                               cumulativeFlags.at("electrons").at(currentDir),cumulativeFlags.at("muons").at(currentDir), \
1185 >                                                                                               cumulativeFlags.at("electron-muon pairs").at(currentDir),scaleFactor);
1186 >            else if(currentHistogram.inputCollection == "electron-jet pairs") fill2DHistogram(histo,currentHistogram,electrons.product(),jets.product(), \
1187 >                                                                                              cumulativeFlags.at("electrons").at(currentDir),cumulativeFlags.at("jets").at(currentDir), \
1188 >                                                                                              cumulativeFlags.at("electron-jet pairs").at(currentDir),scaleFactor);
1189 >            else if(currentHistogram.inputCollection == "electron-photon pairs") fill2DHistogram(histo,currentHistogram,electrons.product(),photons.product(), \
1190 >                                                                                              cumulativeFlags.at("electrons").at(currentDir),cumulativeFlags.at("photons").at(currentDir), \
1191 >                                                                                              cumulativeFlags.at("electron-photon pairs").at(currentDir),scaleFactor);
1192 >            else if(currentHistogram.inputCollection == "muon-jet pairs") fill2DHistogram(histo,currentHistogram,muons.product(),jets.product(), \
1193 >                                                                                          cumulativeFlags.at("muons").at(currentDir),cumulativeFlags.at("jets").at(currentDir), \
1194 >                                                                                          cumulativeFlags.at("muon-jet pairs").at(currentDir),scaleFactor);
1195 >            else if(currentHistogram.inputCollection == "muon-event pairs") fill2DHistogram(histo,currentHistogram,muons.product(),events.product(), \
1196 >                                                                                          cumulativeFlags.at("muons").at(currentDir),cumulativeFlags.at("events").at(currentDir), \
1197 >                                                                                          cumulativeFlags.at("muon-event pairs").at(currentDir),scaleFactor);
1198 >            else if(currentHistogram.inputCollection == "met-jet pairs") fill2DHistogram(histo,currentHistogram,mets.product(),jets.product(), \
1199 >                                                                                         cumulativeFlags.at("mets").at(currentDir),cumulativeFlags.at("jets").at(currentDir), \
1200 >                                                                                         cumulativeFlags.at("met-jet pairs").at(currentDir),scaleFactor);
1201 >            else if(currentHistogram.inputCollection == "track-jet pairs") fill2DHistogram(histo,currentHistogram,tracks.product(),jets.product(),
1202 >                                                                                         cumulativeFlags.at("tracks").at(currentDir),cumulativeFlags.at("jets").at(currentDir), \
1203 >                                                                                         cumulativeFlags.at("track-jet pairs").at(currentDir),scaleFactor);
1204 >            else if(currentHistogram.inputCollection == "photon-jet pairs") fill2DHistogram(histo,currentHistogram,photons.product(),jets.product(), \
1205 >                                                                                          cumulativeFlags.at("photons").at(currentDir),cumulativeFlags.at("jets").at(currentDir), \
1206 >                                                                                          cumulativeFlags.at("photon-jet pairs").at(currentDir),scaleFactor);
1207 >            else if(currentHistogram.inputCollection == "muon-photon pairs") fill2DHistogram(histo,currentHistogram,muons.product(),photons.product(), \
1208 >                                                                                          cumulativeFlags.at("muons").at(currentDir),cumulativeFlags.at("photons").at(currentDir), \
1209 >                                                                                          cumulativeFlags.at("muon-photon pairs").at(currentDir),scaleFactor);
1210 >            else if(currentHistogram.inputCollection == "electron-track pairs") fill2DHistogram(histo,currentHistogram,electrons.product(),tracks.product(),
1211 >                                                                                                cumulativeFlags.at("electrons").at(currentDir),cumulativeFlags.at("tracks").at(currentDir),
1212 >                                                                                                cumulativeFlags.at("electron-track pairs").at(currentDir),scaleFactor);
1213 >            else if(currentHistogram.inputCollection == "muon-track pairs") fill2DHistogram(histo,currentHistogram,muons.product(),tracks.product(),
1214 >                                                                                            cumulativeFlags.at("muons").at(currentDir),cumulativeFlags.at("tracks").at(currentDir),
1215 >                                                                                            cumulativeFlags.at("muon-track pairs").at(currentDir),scaleFactor);
1216 >            else if(currentHistogram.inputCollection == "muon-tau pairs") fill2DHistogram(histo,currentHistogram,muons.product(),taus.product(),
1217 >                                                                                          cumulativeFlags.at("muons").at(currentDir),cumulativeFlags.at("taus").at(currentDir),
1218 >                                                                                          cumulativeFlags.at("muon-tau pairs").at(currentDir),scaleFactor);
1219 >            else if(currentHistogram.inputCollection == "tau-tau pairs") fill2DHistogram(histo,currentHistogram,taus.product(),taus.product(),
1220 >                                                                                         cumulativeFlags.at("taus").at(currentDir),cumulativeFlags.at("taus").at(currentDir),
1221 >                                                                                         cumulativeFlags.at("tau-tau pairs").at(currentDir),scaleFactor);
1222 >            else if(currentHistogram.inputCollection == "tau-track pairs") fill2DHistogram(histo,currentHistogram,taus.product(),tracks.product(),
1223 >                                                                                           cumulativeFlags.at("taus").at(currentDir),cumulativeFlags.at("tracks").at(currentDir),
1224 >                                                                                           cumulativeFlags.at("tau-track pairs").at(currentDir),scaleFactor);
1225 >            else if(currentHistogram.inputCollection == "electron-trigobj pairs") fill2DHistogram(histo,currentHistogram,electrons.product(),trigobjs.product(),
1226 >                                                                                                  cumulativeFlags.at("electrons").at(currentDir),cumulativeFlags.at("trigobjs").at(currentDir),
1227 >                                                                                                  cumulativeFlags.at("electron-trigobj pairs").at(currentDir),scaleFactor);
1228 >            else if(currentHistogram.inputCollection == "muon-trigobj pairs") fill2DHistogram(histo,currentHistogram,muons.product(),trigobjs.product(),
1229 >                                                                                              cumulativeFlags.at("muons").at(currentDir),cumulativeFlags.at("trigobjs").at(currentDir),
1230 >                                                                                              cumulativeFlags.at("muon-trigobj pairs").at(currentDir),scaleFactor);
1231 >            else if(currentHistogram.inputCollection == "events") fill2DHistogram(histo,currentHistogram,events.product(),cumulativeFlags.at("events").at(currentDir),scaleFactor);
1232 >            else if(currentHistogram.inputCollection == "taus") fill2DHistogram(histo,currentHistogram,taus.product(),cumulativeFlags.at("taus").at(currentDir),scaleFactor);
1233 >            else if(currentHistogram.inputCollection == "mets") fill2DHistogram(histo,currentHistogram,mets.product(),cumulativeFlags.at("mets").at(currentDir),scaleFactor);
1234 >            else if(currentHistogram.inputCollection == "tracks") fill2DHistogram(histo,currentHistogram,tracks.product(),cumulativeFlags.at("tracks").at(currentDir),scaleFactor);
1235 >            else if(currentHistogram.inputCollection == "track-event pairs") fill2DHistogram(histo,currentHistogram,tracks.product(),events.product(),
1236 >                                                                                             cumulativeFlags.at("tracks").at(currentDir),cumulativeFlags.at("events").at(currentDir),
1237 >                                                                                             cumulativeFlags.at("track-event pairs").at(currentDir),scaleFactor);
1238 >            else if(currentHistogram.inputCollection == "genjets") fill2DHistogram(histo,currentHistogram,genjets.product(),cumulativeFlags.at("genjets").at(currentDir),scaleFactor);
1239 >            else if(currentHistogram.inputCollection == "mcparticles") fill2DHistogram(histo,currentHistogram,mcparticles.product(),cumulativeFlags.at("mcparticles").at(currentDir),scaleFactor);
1240 >            else if(currentHistogram.inputCollection == "primaryvertexs") fill2DHistogram(histo,currentHistogram,primaryvertexs.product(),cumulativeFlags.at("primaryvertexs").at(currentDir),scaleFactor);
1241 >            else if(currentHistogram.inputCollection == "bxlumis") fill2DHistogram(histo,currentHistogram,bxlumis.product(),cumulativeFlags.at("bxlumis").at(currentDir),scaleFactor);
1242 >            else if(currentHistogram.inputCollection == "photons") fill2DHistogram(histo,currentHistogram,photons.product(),cumulativeFlags.at("photons").at(currentDir),scaleFactor);
1243 >            else if(currentHistogram.inputCollection == "superclusters") fill2DHistogram(histo,currentHistogram,superclusters.product(),cumulativeFlags.at("superclusters").at(currentDir),scaleFactor);
1244 >            else if(currentHistogram.inputCollection == "trigobjs") fill2DHistogram(histo,currentHistogram,trigobjs.product(),cumulativeFlags.at("trigobjs").at(currentDir),scaleFactor);
1245 >            else if(currentHistogram.inputCollection == "stops" && datasetType_ == "signalMC") fill2DHistogram(histo,currentHistogram,stops.product(),cumulativeFlags.at("stops").at(currentDir),scaleFactor);
1246 >          }
1247  
1248 +        }
1249 +
1250 +
1251 +        //fills histograms with the sizes of collections
1252 +        for (uint currentObjectIndex = 0; currentObjectIndex != objectsToPlot.size(); currentObjectIndex++){
1253 +
1254 +          string currentObject = objectsToPlot.at(currentObjectIndex);
1255 +          string objectToPlot = "";
1256 +
1257 +          // Name of objectToPlot here must match the name specified in OSUAnalysis::OSUAnalysis().
1258 +          if(currentObject == "muon-muon pairs")                         objectToPlot = "dimuonPairs";
1259 +          else if(currentObject == "electron-electron pairs")            objectToPlot = "dielectronPairs";
1260 +          else if(currentObject == "electron-muon pairs")                objectToPlot = "electronMuonPairs";
1261 +          else if(currentObject == "electron-photon pairs")              objectToPlot = "electronPhotonPairs";
1262 +          else if(currentObject == "electron-jet pairs")                 objectToPlot = "electronJetPairs";
1263 +          else if(currentObject == "muon-jet pairs")                     objectToPlot = "muonJetPairs";
1264 +          else if(currentObject == "muon-event pairs")                     objectToPlot = "muonEventPairs";
1265 +          else if(currentObject == "muon-photon pairs")                     objectToPlot = "muonPhotonPairs";
1266 +          else if(currentObject == "photon-jet pairs")                     objectToPlot = "photonJetPairs";
1267 +          else if(currentObject == "met-jet pairs")                      objectToPlot = "metJetPairs";
1268 +          else if(currentObject == "track-jet pairs")                    objectToPlot = "trackJetPairs";
1269 +          else if(currentObject == "jet-jet pairs")                      objectToPlot = "dijetPairs";
1270 +          else if(currentObject == "jet-secondary jet pairs")            objectToPlot = "jetSecondaryJetPairs";
1271 +          else if(currentObject == "secondary jets")                     objectToPlot = "secondaryJets";
1272 +          else if(currentObject == "secondary photons")                     objectToPlot = "secondaryPhotons";
1273 +          else if(currentObject == "electron-track pairs")               objectToPlot = "electronTrackPairs";
1274 +          else if(currentObject == "muon-track pairs")                   objectToPlot = "muonTrackPairs";
1275 +          else if(currentObject == "muon-tau pairs")                     objectToPlot = "muonTauPairs";
1276 +          else if(currentObject == "tau-tau pairs")                      objectToPlot = "ditauPairs";
1277 +          else if(currentObject == "tau-track pairs")                    objectToPlot = "tauTrackPairs";
1278 +          else if(currentObject == "track-event pairs")                  objectToPlot = "trackEventPairs";
1279 +          else if(currentObject == "muon-secondary muon pairs")          objectToPlot = "muonSecondaryMuonPairs";
1280 +          else if(currentObject == "secondary muons")                    objectToPlot = "secondaryMuons";
1281 +          else if(currentObject == "muon-secondary jet pairs")           objectToPlot = "muonSecondaryJetPairs";
1282 +          else if(currentObject == "muon-secondary photon pairs")           objectToPlot = "muonSecondaryJetPairs";
1283 +          else if(currentObject == "electron-secondary jet pairs")       objectToPlot = "electronSecondaryJetPairs";
1284 +          else if(currentObject == "photon-secondary jet pairs")         objectToPlot = "photonSecondaryJetPairs";
1285 +          else if(currentObject == "electron-secondary electron pairs")  objectToPlot = "electronSecondaryElectronPairs";
1286 +          else if(currentObject == "secondary electrons")                objectToPlot = "secondaryElectrons";
1287 +          else if(currentObject == "electron-trigobj pairs")             objectToPlot = "electronTrigobjPairs";
1288 +          else if(currentObject == "muon-trigobj pairs")                 objectToPlot = "muonTrigobjPairs";
1289 +          else objectToPlot = currentObject;
1290 +
1291 +          string tempCurrentObject = objectToPlot;
1292 +          tempCurrentObject.at(0) = toupper(tempCurrentObject.at(0));
1293 +          string histoName = "num" + tempCurrentObject;
1294 +
1295 +
1296 +          if(find(objectsToCut.begin(), objectsToCut.end(), currentObject) != objectsToCut.end()) {
1297 +            flagPair lastCutFlags = cumulativeFlags.at(currentObject).at(currentDir);
1298 +            int numToPlot = 0;
1299 +            for (uint currentFlag = 0; currentFlag != lastCutFlags.size(); currentFlag++){
1300 +              if(lastCutFlags.at(currentFlag).second) numToPlot++;
1301 +            }
1302 +
1303 +            if(objectToPlot == "primaryvertexs"){
1304 +              oneDHists_.at(currentChannelIndex).at(currentCut).at(histoName+"BeforePileupCorrection")->Fill(primaryvertexs->size());
1305 +              oneDHists_.at(currentChannelIndex).at(currentCut).at(histoName+"AfterPileupCorrection")->Fill(primaryvertexs->size(),scaleFactor);
1306 +            }
1307 +            else {
1308 +              oneDHists_.at(currentChannelIndex).at(currentCut).at(histoName)->Fill(numToPlot,scaleFactor);
1309 +            }
1310 +          }
1311 +        } // end for (uint currentObjectIndex = 0; currentObjectIndex != objectsToPlot.size(); currentObjectIndex++)
1312 +
1313 +
1314 +      } // end if(eventPassedPreviousCuts.at(currentDir))
1315 +    } // end loop over cuts
1316 +
1317 +    if (!useEDMFormat_ && eventPassedAllCuts){
1318 +      // Assign BNTree variables
1319 +      for (uint iBranch = 0; iBranch != treeBranches_.size(); iBranch++) {
1320 +        BranchSpecs brSpecs = treeBranches_.at(iBranch);
1321 +        string coll = brSpecs.inputCollection;
1322 +        if (cumulativeFlags.count(coll) == 0) clog << "Error: no flags found for collection:  " << coll << ", will cause a seg fault" << endl;
1323 +
1324 +        if     (coll == "jets")                assignTreeBranch(brSpecs,jets.product(),          cumulativeFlags.at(coll).back());
1325 +        else if(coll == "secondary jets")      assignTreeBranch(brSpecs,jets.product(),          cumulativeFlags.at(coll).back());
1326 +        else if(coll == "secondary photons")      assignTreeBranch(brSpecs,photons.product(),          cumulativeFlags.at(coll).back());
1327 +        else if(coll == "muons")               assignTreeBranch(brSpecs,muons.product(),         cumulativeFlags.at(coll).back());
1328 +        else if(coll == "secondary muons")     assignTreeBranch(brSpecs,muons.product(),         cumulativeFlags.at(coll).back());
1329 +        else if(coll == "electrons")           assignTreeBranch(brSpecs,electrons.product(),     cumulativeFlags.at(coll).back());
1330 +        else if(coll == "secondary electrons") assignTreeBranch(brSpecs,electrons.product(),     cumulativeFlags.at(coll).back());
1331 +        else if(coll == "events")              assignTreeBranch(brSpecs,events.product(),        cumulativeFlags.at(coll).back());
1332 +        else if(coll == "taus")                assignTreeBranch(brSpecs,taus.product(),          cumulativeFlags.at(coll).back());
1333 +        else if(coll == "mets")                assignTreeBranch(brSpecs,mets.product(),          cumulativeFlags.at(coll).back());
1334 +        else if(coll == "tracks")              assignTreeBranch(brSpecs,tracks.product(),        cumulativeFlags.at(coll).back());
1335 +        else if(coll == "genjets")             assignTreeBranch(brSpecs,genjets.product(),       cumulativeFlags.at(coll).back());
1336 +        else if(coll == "mcparticles")         assignTreeBranch(brSpecs,mcparticles.product(),   cumulativeFlags.at(coll).back());
1337 +        else if(coll == "primaryvertexs")      assignTreeBranch(brSpecs,primaryvertexs.product(),cumulativeFlags.at(coll).back());
1338 +        else if(coll == "bxlumis")             assignTreeBranch(brSpecs,bxlumis.product(),       cumulativeFlags.at(coll).back());
1339 +        else if(coll == "photons")             assignTreeBranch(brSpecs,photons.product(),       cumulativeFlags.at(coll).back());
1340 +        else if(coll == "superclusters")       assignTreeBranch(brSpecs,superclusters.product(), cumulativeFlags.at(coll).back());
1341 +        else if(coll == "trigobjs")            assignTreeBranch(brSpecs,trigobjs.product(),      cumulativeFlags.at(coll).back());
1342 +        else if(coll == "stops"
1343 +                && datasetType_ == "signalMC") assignTreeBranch(brSpecs,stops.product(),         cumulativeFlags.at(coll).back());
1344 +      } // end loop over branches
1345 +
1346 +      if (!BNTrees_.at(currentChannelIndex)) { clog << "ERROR:  Undefined BNTree.  Will likely seg fault." << endl; }
1347 +      BNTrees_.at(currentChannelIndex)->Fill();  // only fill if event has passed cuts
1348 +    }
1349 +
1350 +    (*channelDecisions)[currentChannel.name] = eventPassedAllCuts;
1351 +
1352 +  } // end loop over channel
1353  
1354    masterCutFlow_->fillCutFlow(masterScaleFactor);
1355  
1356 +  event.put (channelDecisions, "channelDecisions");
1357  
1358   } // end void OSUAnalysis::analyze (const edm::Event &event, const edm::EventSetup &setup)
1359  
# Line 1151 | Line 1370 | OSUAnalysis::evaluateComparison (double
1370    else if(comparison == "==") return testValue == cutValue;
1371    else if(comparison == "=") return testValue == cutValue;
1372    else if(comparison == "!=") return testValue != cutValue;
1373 <  else {cout << "WARNING: invalid comparison operator '" << comparison << "'\n"; return false;}
1373 >  else {clog << "WARNING: invalid comparison operator '" << comparison << "'\n"; return false;}
1374  
1375   }
1376  
# Line 1166 | Line 1385 | OSUAnalysis::evaluateComparison (string
1385    else if(comparison == "==") return testValue == cutValue;
1386    else if(comparison == "=") return testValue == cutValue;
1387    else if(comparison == "!=") return testValue != cutValue;
1388 <  else {cout << "WARNING: invalid comparison operator '" << comparison << "'\n"; return false;}
1388 >  else {clog << "WARNING: invalid comparison operator '" << comparison << "'\n"; return false;}
1389  
1390   }
1391  
# Line 1176 | Line 1395 | OSUAnalysis::evaluateTriggers (vector<st
1395    //initialize to false until a chosen trigger is passed
1396    bool triggerDecision = false;
1397  
1398 <  if (printAllTriggers_) cout << "Printing list of all available triggers (which this event may or may not pass):" << endl;  
1398 >  if (printAllTriggers_) clog << "Printing list of all available triggers (which this event may or may not pass):" << endl;
1399    //loop over all triggers defined in the event
1400    for (BNtriggerCollection::const_iterator trigger = triggerCollection->begin (); trigger != triggerCollection->end (); trigger++){
1401  
1402 <    if (printAllTriggers_) cout << "   " << trigger->name << endl;  
1402 >    if (printAllTriggers_) clog << "   " << trigger->name << endl;
1403  
1404      //we're only interested in triggers that actually passed
1405      if(trigger->pass != 1) continue;
# Line 1192 | Line 1411 | OSUAnalysis::evaluateTriggers (vector<st
1411      //if the event passes one of the chosen triggers, set triggerDecision to true
1412      for(uint triggerName = 0; triggerName != triggersToTest.size(); triggerName++){
1413        if(trigger->name.find(triggersToTest.at(triggerName))!=string::npos) triggerDecision = true;
1414 <    }  
1414 >    }
1415    }
1416  
1417 <  printAllTriggers_ = false;  // only print triggers once, not every event  
1417 >  printAllTriggers_ = false;  // only print triggers once, not every event
1418  
1419 <  //if none of the veto triggers fired:
1419 >  //if none of the veto triggers fired:
1420    //return the OR of all the chosen triggers
1421    if (triggersToTest.size() != 0) return triggerDecision;
1422    //or if no triggers were defined return true
# Line 1366 | Line 1585 | OSUAnalysis::valueLookup (const BNjet* o
1585    else if(variable == "puJetId_loose_simple") value = object->puJetId_loose_simple;
1586    else if(variable == "puJetId_loose_cutbased") value = object->puJetId_loose_cutbased;
1587  
1588 +  //user defined variable
1589 +  else if(variable == "disappTrkLeadingJetID") {
1590 +    value = object->pt > 110
1591 +      && fabs(object->eta) < 2.4
1592 +      && object->chargedHadronEnergyFraction > 0.2
1593 +      && object->neutralHadronEnergyFraction < 0.7
1594 +      && object->chargedEmEnergyFraction < 0.5
1595 +      && object->neutralEmEnergyFraction < 0.7;
1596 +  }
1597 +
1598 +  else if(variable == "disappTrkSubLeadingJetID") {
1599 +    value = object->pt > 30
1600 +      && fabs(object->eta) < 4.5
1601 +      && object->neutralHadronEnergyFraction < 0.7
1602 +      && object->chargedEmEnergyFraction < 0.5;
1603 +  }
1604 +
1605 +  else if(variable == "dPhiMet") {
1606 +    if (const BNmet *met = chosenMET ()) {
1607 +      value = deltaPhi (object->phi, met->phi);
1608 +    } else value = -999;
1609 +  }
1610 +
1611  
1612 <  else{cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
1612 >  else{clog << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
1613  
1614    value = applyFunction(function, value);
1615  
1616    return value;
1617 < }
1617 > } // end jet valueLookup
1618  
1619  
1620   //!muon valueLookup
# Line 1469 | Line 1711 | OSUAnalysis::valueLookup (const BNmuon*
1711    else if(variable == "neutralHadronIsoDR04") value = object->neutralHadronIsoDR04;
1712    else if(variable == "photonIsoDR04") value = object->photonIsoDR04;
1713    else if(variable == "puChargedHadronIsoDR04") value = object->puChargedHadronIsoDR04;
1714 +  else if(variable == "chargedHadronIsoDR04") value = object->chargedHadronIsoDR04;
1715 +  else if(variable == "neutralHadronIsoDR04") value = object->neutralHadronIsoDR04;
1716 +  else if(variable == "photonIsoDR04") value = object->photonIsoDR04;
1717 +  else if(variable == "puChargedHadronIsoDR04") value = object->puChargedHadronIsoDR04;
1718    else if(variable == "rhoPrime") value = object->rhoPrime;
1719    else if(variable == "AEffDr03") value = object->AEffDr03;
1720    else if(variable == "AEffDr04") value = object->AEffDr04;
# Line 1476 | Line 1722 | OSUAnalysis::valueLookup (const BNmuon*
1722    else if(variable == "pfIsoR03SumNeutralHadronEt") value = object->pfIsoR03SumNeutralHadronEt;
1723    else if(variable == "pfIsoR03SumPhotonEt") value = object->pfIsoR03SumPhotonEt;
1724    else if(variable == "pfIsoR03SumPUPt") value = object->pfIsoR03SumPUPt;
1725 +  else if(variable == "relpfIsoR04SumExceptChargedHad") value = (object->pfIsoR04SumNeutralHadronEt + object->pfIsoR04SumPhotonEt - 0.5*object->pfIsoR04SumPUPt)/ object->pt;
1726 +  else if(variable == "relpfIsoR04SumChargedHadronPt") value = object->pfIsoR04SumChargedHadronPt/object->pt;
1727 +  else if(variable == "relpfIsoR04SumNeutralHadronEt") value = object->pfIsoR04SumNeutralHadronEt/object->pt;
1728 +  else if(variable == "relpfIsoR04SumPhotonEt") value = object->pfIsoR04SumPhotonEt/object->pt;
1729 +  else if(variable == "relpfIsoR04SumPUPt") value = object->pfIsoR04SumPUPt/object->pt;
1730    else if(variable == "pfIsoR04SumChargedHadronPt") value = object->pfIsoR04SumChargedHadronPt;
1731    else if(variable == "pfIsoR04SumNeutralHadronEt") value = object->pfIsoR04SumNeutralHadronEt;
1732    else if(variable == "pfIsoR04SumPhotonEt") value = object->pfIsoR04SumPhotonEt;
# Line 1532 | Line 1783 | OSUAnalysis::valueLookup (const BNmuon*
1783    else if(variable == "time_ndof") value = object->time_ndof;
1784  
1785    //user-defined variables
1786 +  else if(variable == "looseID") {
1787 +    value = object->pt > 10 &&
1788 +      (object->isGlobalMuon  > 0 ||
1789 +       object->isTrackerMuon > 0);
1790 +  }
1791    else if(variable == "correctedD0VertexErr") value =  hypot (object->tkD0err, hypot (chosenVertex ()->xError, chosenVertex ()->yError));
1792    else if(variable == "correctedD0VertexSig") value =  object->correctedD0Vertex / hypot (object->tkD0err, hypot (chosenVertex ()->xError, chosenVertex ()->yError));
1793    else if(variable == "detIso") value = (object->trackIsoDR03) / object->pt;
1794    else if(variable == "relPFdBetaIso") value = (object->pfIsoR04SumChargedHadronPt + max(0.0, object->pfIsoR04SumNeutralHadronEt + object->pfIsoR04SumPhotonEt - 0.5*object->pfIsoR04SumPUPt)) / object->pt;
1795 +  else if(variable == "relPFdBetaIsoPseudo") value = (object->pfIsoR04SumChargedHadronPt + object->pfIsoR04SumNeutralHadronEt + object->pfIsoR04SumPhotonEt - 0.5*object->pfIsoR04SumPUPt) / object->pt;
1796    else if(variable == "relPFrhoIso") value = ( object->chargedHadronIso + max(0.0, object->neutralHadronIso + object->photonIso - object->AEffDr03*object->rhoPrime) ) / object->pt;
1797    else if(variable == "metMT") {
1798      if (const BNmet *met = chosenMET ())
# Line 1732 | Line 1989 | OSUAnalysis::valueLookup (const BNmuon*
1989  
1990  
1991  
1992 <  else{cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
1992 >  else{clog << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
1993  
1994    value = applyFunction(function, value);
1995  
1996    return value;
1997 < }
1997 > } // end muon valueLookup
1998 >
1999  
2000   //!electron valueLookup
2001   double
# Line 1906 | Line 2164 | OSUAnalysis::valueLookup (const BNelectr
2164    else if(variable == "correctedD0VertexSig") value =  object->correctedD0Vertex / hypot (object->tkD0err, hypot (chosenVertex ()->xError, chosenVertex ()->yError));
2165    else if(variable == "detIso") value = (object->trackIso) / object->pt;
2166    else if(variable == "relPFrhoIso") value = ( object->chargedHadronIsoDR03 + max(0.0, object->neutralHadronIsoDR03 + object->photonIsoDR03 - object->AEffDr03*object->rhoPrime) ) / object->pt;
2167 +  else if(variable == "relPFrhoIsoEB") value = object->isEB ? ( object->chargedHadronIsoDR03 + max(0.0, object->neutralHadronIsoDR03 + object->photonIsoDR03 - object->AEffDr03*object->rhoPrime) ) / object->pt : -999;
2168 +  else if(variable == "relPFrhoIsoEE") value = object->isEE ? ( object->chargedHadronIsoDR03 + max(0.0, object->neutralHadronIsoDR03 + object->photonIsoDR03 - object->AEffDr03*object->rhoPrime) ) / object->pt : -999;
2169    else if(variable == "metMT") {
2170      if (const BNmet *met = chosenMET ())
2171        {
# Line 1977 | Line 2237 | OSUAnalysis::valueLookup (const BNelectr
2237      else value = -999;
2238    }
2239  
2240 +  else if(variable == "looseID"){
2241 +    if (object->isEB)
2242 +      {
2243 +        value = fabs(object->delEtaIn) < 0.007 \
2244 +          && fabs (object->delPhiIn) < 0.15 \
2245 +          && object->scSigmaIEtaIEta < 0.01 \
2246 +          && object->hadOverEm < 0.12 \
2247 +          && fabs (object->correctedD0Vertex) < 0.02 \
2248 +          && fabs (object->correctedDZ) < 0.2 \
2249 +          && object->absInvEMinusInvPin < 0.05 \
2250 +          && object->passConvVeto;
2251 +      }
2252 +    else
2253 +      {
2254 +        value = fabs(object->delEtaIn) < 0.009 \
2255 +          && fabs (object->delPhiIn) < 0.10 \
2256 +          && object->scSigmaIEtaIEta < 0.03 \
2257 +          && object->hadOverEm < 0.10 \
2258 +          && fabs (object->correctedD0Vertex) < 0.02 \
2259 +          && fabs (object->correctedDZ) < 0.2 \
2260 +          && object->absInvEMinusInvPin < 0.05 \
2261 +          && object->passConvVeto;
2262 +      }
2263 +  }
2264 +
2265    else if(variable == "tightID"){
2266      if (object->isEB)
2267        {
# Line 2002 | Line 2287 | OSUAnalysis::valueLookup (const BNelectr
2287        }
2288    }
2289  
2290 +  else if(variable == "looseID_MVA"){
2291 +    value = object->pt > 10
2292 +      && object->mvaNonTrigV0 > 0;
2293 +      }
2294    else if(variable == "correctedD0VertexInEBPositiveCharge"){
2295      if(fabs(object->eta) < 0.8 && object->charge > 0) value = object->correctedD0Vertex;
2296      else value = -999;
# Line 2132 | Line 2421 | OSUAnalysis::valueLookup (const BNelectr
2421  
2422  
2423  
2424 <  else{cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
2424 >  else{clog << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
2425  
2426    value = applyFunction(function, value);
2427  
2428    return value;
2429 < }
2429 > } // end electron valueLookup
2430 >
2431  
2432   //!event valueLookup
2433   double
# Line 2149 | Line 2439 | OSUAnalysis::valueLookup (const BNevent*
2439    else if(variable == "pthat") value = object->pthat;
2440    else if(variable == "qScale") value = object->qScale;
2441    else if(variable == "alphaQCD") value = object->alphaQCD;
2442 +  else if(variable == "Ht") value = getHt(jets.product());
2443    else if(variable == "alphaQED") value = object->alphaQED;
2444    else if(variable == "scalePDF") value = object->scalePDF;
2445    else if(variable == "x1") value = object->x1;
# Line 2219 | Line 2510 | OSUAnalysis::valueLookup (const BNevent*
2510    else if(variable == "electronScaleFactor") value = electronScaleFactor_;
2511    else if(variable == "stopCTauScaleFactor") value = stopCTauScaleFactor_;
2512    else if(variable == "bTagScaleFactor") value = bTagScaleFactor_;
2513 <  else{cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
2513 >  else if(variable == "ht") value = chosenHT ();
2514 >  else if(variable == "leadMuPairInvMass"){
2515 >    pair<const BNmuon *, const BNmuon *> muPair = leadMuonPair ();
2516 >    TLorentzVector p0 (muPair.first->px, muPair.first->py, muPair.first->pz, muPair.first->energy),
2517 >                   p1 (muPair.second->px, muPair.second->py, muPair.second->pz, muPair.second->energy);
2518 >    value = (p0 + p1).M ();
2519 >  }
2520 >  else if(variable == "leadMuPairPt"){
2521 >    pair<const BNmuon *, const BNmuon *> muPair = leadMuonPair ();
2522 >    TVector2 pt0 (muPair.first->px, muPair.first->py),
2523 >             pt1 (muPair.second->px, muPair.second->py);
2524 >    pt0 += pt1;
2525 >    value = pt0.Mod ();
2526 >  }
2527 >  else if(variable == "leadElPairInvMass"){
2528 >    pair<const BNelectron *, const BNelectron *> muPair = leadElectronPair ();
2529 >    TLorentzVector p0 (muPair.first->px, muPair.first->py, muPair.first->pz, muPair.first->energy),
2530 >                   p1 (muPair.second->px, muPair.second->py, muPair.second->pz, muPair.second->energy);
2531 >    value = (p0 + p1).M ();
2532 >  }
2533 >  else if(variable == "leadElPairPt"){
2534 >    pair<const BNelectron *, const BNelectron *> muPair = leadElectronPair ();
2535 >    TVector2 pt0 (muPair.first->px, muPair.first->py),
2536 >             pt1 (muPair.second->px, muPair.second->py);
2537 >    pt0 += pt1;
2538 >    value = pt0.Mod ();
2539 >  }
2540 >  else{clog << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
2541  
2542    value = applyFunction(function, value);
2543  
2544    return value;
2545 < }
2545 > } // end event valueLookup
2546 >
2547  
2548   //!tau valueLookup
2549   double
# Line 2272 | Line 2591 | OSUAnalysis::valueLookup (const BNtau* o
2591    else if(variable == "HPSdecayModeFinding") value = object->HPSdecayModeFinding;
2592    else if(variable == "leadingTrackValid") value = object->leadingTrackValid;
2593  
2594 <
2594 >  else if (variable == "looseHadronicID") {
2595 >    value = object->pt > 10
2596 >      && object->eta < 2.3
2597 >      && object->HPSbyLooseCombinedIsolationDeltaBetaCorr > 0
2598 >      && object->HPSdecayModeFinding > 0
2599 >      && object->HPSagainstElectronLoose > 0
2600 >      && object->HPSagainstMuonTight > 0;
2601 >  }
2602  
2603    else if(variable == "genDeltaRLowest") value = getGenDeltaRLowest(object);
2604  
# Line 2319 | Line 2645 | OSUAnalysis::valueLookup (const BNtau* o
2645    }
2646  
2647  
2648 <  else{cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
2648 >  else{clog << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
2649  
2650    value = applyFunction(function, value);
2651  
2652    return value;
2653 < }
2653 > } // end tau valueLookup
2654 >
2655  
2656   //!met valueLookup
2657   double
# Line 2392 | Line 2719 | OSUAnalysis::valueLookup (const BNmet* o
2719    else if(variable == "pfT1jet10pt") value = object->pfT1jet10pt;
2720    else if(variable == "pfT1jet10phi") value = object->pfT1jet10phi;
2721  
2722 <  else{cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
2722 >  else{clog << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
2723  
2724    value = applyFunction(function, value);
2725  
2726    return value;
2727 < }
2727 > } // end met valueLookup
2728 >
2729  
2730   //!track valueLookup
2731   double
# Line 2425 | Line 2753 | OSUAnalysis::valueLookup (const BNtrack*
2753    else if(variable == "numValidHits") value = object->numValidHits;
2754    else if(variable == "isHighPurity") value = object->isHighPurity;
2755  
2428 –
2756    //additional BNs info for disappTrks
2757 <  else if(variable == "caloEMDeltaRp3") value = object->caloEMDeltaRp3;
2758 <  else if(variable == "caloHadDeltaRp3") value = object->caloHadDeltaRp3;
2759 <  else if(variable == "caloEMDeltaRp4") value = object->caloEMDeltaRp4;
2760 <  else if(variable == "caloHadDeltaRp4") value = object->caloHadDeltaRp4;
2761 <  else if(variable == "caloEMDeltaRp5") value = object->caloEMDeltaRp5;
2762 <  else if(variable == "caloHadDeltaRp5") value = object->caloHadDeltaRp5;
2763 <  else if(variable == "nTracksRp5") value = object->nTracksRp5;
2764 <  else if(variable == "nHitsMissingOuter") value = object->nHitsMissingOuter;
2438 <  else if(variable == "nHitsMissingInner") value = object->nHitsMissingInner;
2757 >  else if(variable == "caloEMDeltaRp3")     value = object->caloEMDeltaRp3;
2758 >  else if(variable == "caloHadDeltaRp3")    value = object->caloHadDeltaRp3;
2759 >  else if(variable == "caloEMDeltaRp4")     value = object->caloEMDeltaRp4;
2760 >  else if(variable == "caloHadDeltaRp4")    value = object->caloHadDeltaRp4;
2761 >  else if(variable == "caloEMDeltaRp5")     value = object->caloEMDeltaRp5;
2762 >  else if(variable == "caloHadDeltaRp5")    value = object->caloHadDeltaRp5;
2763 >  else if(variable == "nHitsMissingOuter")  value = object->nHitsMissingOuter;
2764 >  else if(variable == "nHitsMissingInner")  value = object->nHitsMissingInner;
2765    else if(variable == "nHitsMissingMiddle") value = object->nHitsMissingMiddle;
2766 <  else if(variable == "depTrkRp5") value = object->depTrkRp5;
2766 >  else if(variable == "depTrkRp3")          value = object->depTrkRp3;
2767 >  else if(variable == "trkRelIsoRp3")       value = (object->depTrkRp3 - object->pt) / object->pt;
2768 >  else if(variable == "trkRelIsoRp5")       value = (object->depTrkRp5 - object->pt) / object->pt;
2769 >  else if(variable == "depEcalRp3")         value = object->depEcalRp3;
2770 >  else if(variable == "depHcalRp3")         value = object->depHcalRp3;
2771 >  else if(variable == "depHoRp3")           value = object->depHoRp3;
2772 >  else if(variable == "nTracksRp3")         value = object->nTracksRp3;
2773 >  else if(variable == "trackerVetoPtRp3")   value = object->trackerVetoPtRp3;
2774 >  else if(variable == "emVetoEtRp3")        value = object->emVetoEtRp3;
2775 >  else if(variable == "hadVetoEtRp3")       value = object->hadVetoEtRp3;
2776 >  else if(variable == "hoVetoEtRp3")        value = object->hoVetoEtRp3;
2777 >  else if(variable == "depTrkRp5")          value = object->depTrkRp5;
2778 >  else if(variable == "depEcalRp5")         value = object->depEcalRp5;
2779 >  else if(variable == "depHcalRp5")         value = object->depHcalRp5;
2780 >  else if(variable == "depHoRp5")           value = object->depHoRp5;
2781 >  else if(variable == "nTracksRp5")         value = object->nTracksRp5;
2782 >  else if(variable == "trackerVetoPtRp5")   value = object->trackerVetoPtRp5;
2783 >  else if(variable == "emVetoEtRp5")        value = object->emVetoEtRp5;
2784 >  else if(variable == "hadVetoEtRp5")       value = object->hadVetoEtRp5;
2785 >  else if(variable == "hoVetoEtRp5")        value = object->hoVetoEtRp5;
2786  
2787    //user defined variables
2788    else if(variable == "d0wrtBS") value = (object->vx-events->at(0).BSx)*object->py/object->pt - (object->vy-events->at(0).BSy)*object->px/object->pt;
2789    else if(variable == "dZwrtBS") value = object->dZ - events->at(0).BSz;
2790 <  else if(variable == "depTrkRp5MinusPt")           value =  (object->depTrkRp5 - object->pt);
2790 >  else if(variable == "depTrkRp5MinusPt"){
2791 >    if ( (object->depTrkRp5 - object->pt) < 0 ) {
2792 >           value = 0;
2793 >         }
2794 >         else value =  (object->depTrkRp5 - object->pt);
2795 >  }
2796 >  else if(variable == "depTrkRp3MinusPt"){
2797 >    if ( (object->depTrkRp3 - object->pt) < 0 ) {
2798 >      value = 0;
2799 >    }
2800 >    else value =  (object->depTrkRp3 - object->pt);
2801 >  }
2802 >
2803 >  else if(variable == "dPhiMet") {
2804 >    if (const BNmet *met = chosenMET ()) {
2805 >      value = deltaPhi (object->phi, met->phi);
2806 >    } else value = -999;
2807 >  }
2808 >  
2809 >  
2810    else if(variable == "caloTotDeltaRp5")            value =  (object->caloHadDeltaRp5 + object->caloEMDeltaRp5);
2811    else if(variable == "caloTotDeltaRp5ByP")         value = ((object->caloHadDeltaRp5 + object->caloEMDeltaRp5)/pMag);
2812    else if(variable == "caloTotDeltaRp5RhoCorr")     value = getTrkCaloTotRhoCorr(object);
# Line 2470 | Line 2834 | OSUAnalysis::valueLookup (const BNtrack*
2834        pt = object->pt;
2835      value = vz - (vx * px + vy * py)/pt * (pz/pt);
2836    }
2837 +
2838 +
2839    else if(variable == "genDeltaRLowest") value = getGenDeltaRLowest(object);
2840  
2841    else if(variable == "genMatchedPdgId"){
# Line 2517 | Line 2883 | OSUAnalysis::valueLookup (const BNtrack*
2883  
2884  
2885  
2886 <  else{cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
2886 >  else{clog << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
2887  
2888    value = applyFunction(function, value);
2889  
2890    return value;
2891 < }
2891 > } // end track valueLookup
2892 >
2893  
2894   //!genjet valueLookup
2895   double
# Line 2546 | Line 2913 | OSUAnalysis::valueLookup (const BNgenjet
2913    else if(variable == "charge") value = object->charge;
2914  
2915  
2916 <  else{cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
2916 >  else{clog << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
2917  
2918    value = applyFunction(function, value);
2919  
# Line 2680 | Line 3047 | OSUAnalysis::valueLookup (const BNmcpart
3047    }
3048  
3049  
3050 <  else{cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
3050 >  else{clog << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
3051  
3052    value = applyFunction(function, value);
3053  
3054    return value;
3055 < }
3055 > } // end mcparticle valueLookup
3056 >
3057  
3058   //!primaryvertex valueLookup
3059   double
# Line 2708 | Line 3076 | OSUAnalysis::valueLookup (const BNprimar
3076    else if(variable == "isGood") value = object->isGood;
3077  
3078  
3079 <  else{cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
3079 >  else{clog << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
3080  
3081    value = applyFunction(function, value);
3082  
# Line 2726 | Line 3094 | OSUAnalysis::valueLookup (const BNbxlumi
3094    else if(variable == "bx_LUMI_now") value = object->bx_LUMI_now;
3095  
3096  
3097 <  else{cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
3097 >  else{clog << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
3098  
3099    value = applyFunction(function, value);
3100  
# Line 2859 | Line 3227 | OSUAnalysis::valueLookup (const BNphoton
3227    }
3228  
3229  
3230 <  else{cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
3230 >  else{clog << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
3231  
3232    value = applyFunction(function, value);
3233  
3234    return value;
3235 < }
3235 > } // end photon valueLookup
3236 >
3237  
3238   //!supercluster valueLookup
3239   double
# Line 2882 | Line 3251 | OSUAnalysis::valueLookup (const BNsuperc
3251    else if(variable == "theta") value = object->theta;
3252  
3253  
3254 <  else{cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
3254 >  else{clog << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
3255  
3256    value = applyFunction(function, value);
3257  
# Line 2916 | Line 3285 | OSUAnalysis::valueLookup (const BNtrigob
3285        stringValue = "none";  // stringValue should only be empty if value is filled
3286    }
3287  
3288 <  else{cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
3288 >  else{clog << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
3289  
3290    value = applyFunction(function, value);
3291  
# Line 2987 | Line 3356 | OSUAnalysis::valueLookup (const BNmuon*
3356        value = object2->correctedD0;
3357      }
3358  
3359 <  else{cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
3359 >  else{clog << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
3360 >
3361 >  value = applyFunction(function, value);
3362 >
3363 >  return value;
3364 > } // end muon-muon pair valueLookup
3365 >
3366 >
3367 > //!muon-photon pair valueLookup
3368 > double
3369 > OSUAnalysis::valueLookup (const BNmuon* object1, const BNphoton* object2, string variable, string function, string &stringValue){
3370 >
3371 >  double value = 0.0;
3372 >
3373 >  if(variable == "deltaPhi") value = fabs(deltaPhi(object1->phi,object2->phi));
3374 >  else if(variable == "deltaEta") value = fabs(object1->eta - object2->eta);
3375 >  else if(variable == "photonEta") value = object2->eta;
3376 >  else if(variable == "photonPt") value = object2->pt;
3377 >  else if(variable == "muonEta") value = object1->eta;
3378 >  else if(variable == "photonPhi") value = object2->phi;
3379 >  else if(variable == "muonPhi") value = object1->phi;
3380 >  else if(variable == "deltaR") value = deltaR(object1->eta,object1->phi,object2->eta,object2->phi);
3381 >  else if(variable == "photonGenMotherId") value = object2->genMotherId;
3382 >  else if(variable == "muonRelPFdBetaIso") value = (object1->pfIsoR04SumChargedHadronPt + max(0.0, object1->pfIsoR04SumNeutralHadronEt + object1->pfIsoR04SumPhotonEt - 0.5*object1->pfIsoR04SumPUPt)) / object1->pt;
3383 >  else if(variable == "invMass"){
3384 >    TLorentzVector fourVector1(object1->px, object1->py, object1->pz, object1->energy);
3385 >    TLorentzVector fourVector2(object2->px, object2->py, object2->pz, object2->energy);
3386 >    value = (fourVector1 + fourVector2).M();
3387 >  }
3388 >  else if(variable == "pt"){
3389 >    TLorentzVector fourVector1(object1->px, object1->py, object1->pz, object1->energy);
3390 >    TLorentzVector fourVector2(object2->px, object2->py, object2->pz, object2->energy);
3391 >    value = (fourVector1 + fourVector2).Pt();
3392 >  }
3393 >  else if(variable == "threeDAngle")
3394 >    {
3395 >      TVector3 threeVector1(object1->px, object1->py, object1->pz);
3396 >      TVector3 threeVector2(object2->px, object2->py, object2->pz);
3397 >      value = (threeVector1.Angle(threeVector2));
3398 >    }
3399 >  else if(variable == "alpha")
3400 >    {
3401 >      static const double pi = 3.1415926535897932384626433832795028841971693993751058;
3402 >      TVector3 threeVector1(object1->px, object1->py, object1->pz);
3403 >      TVector3 threeVector2(object2->px, object2->py, object2->pz);
3404 >      value = (pi-threeVector1.Angle(threeVector2));
3405 >    }
3406 >  else{clog << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
3407 >
3408 >  value = applyFunction(function, value);
3409 >
3410 >  return value;
3411 > }
3412 >
3413 > //!electron-photon pair valueLookup
3414 > double
3415 > OSUAnalysis::valueLookup (const BNelectron* object1, const BNphoton* object2, string variable, string function, string &stringValue){
3416 >
3417 >  double value = 0.0;
3418 >
3419 >  if(variable == "deltaPhi") value = fabs(deltaPhi(object1->phi,object2->phi));
3420 >  else if(variable == "deltaEta") value = fabs(object1->eta - object2->eta);
3421 >  else if(variable == "photonEta") value = object2->eta;
3422 >  else if(variable == "photonPt") value = object2->pt;
3423 >  else if(variable == "electronEta") value = object1->eta;
3424 >  else if(variable == "photonPhi") value = object2->phi;
3425 >  else if(variable == "electronPhi") value = object1->phi;
3426 >  else if(variable == "deltaR") value = deltaR(object1->eta,object1->phi,object2->eta,object2->phi);
3427 >  else if(variable == "photonGenMotherId") value = object2->genMotherId;
3428 >  else if(variable == "electronRelPFrhoIso") value = ( object1->chargedHadronIsoDR03 + max(0.0, object1->neutralHadronIsoDR03 + object1->photonIsoDR03 - object1->AEffDr03*object1->rhoPrime) ) / object1->pt;
3429 >  else if(variable == "invMass"){
3430 >    TLorentzVector fourVector1(object1->px, object1->py, object1->pz, object1->energy);
3431 >    TLorentzVector fourVector2(object2->px, object2->py, object2->pz, object2->energy);
3432 >    value = (fourVector1 + fourVector2).M();
3433 >  }
3434 >  else if(variable == "pt"){
3435 >    TLorentzVector fourVector1(object1->px, object1->py, object1->pz, object1->energy);
3436 >    TLorentzVector fourVector2(object2->px, object2->py, object2->pz, object2->energy);
3437 >    value = (fourVector1 + fourVector2).Pt();
3438 >  }
3439 >  else if(variable == "threeDAngle")
3440 >    {
3441 >      TVector3 threeVector1(object1->px, object1->py, object1->pz);
3442 >      TVector3 threeVector2(object2->px, object2->py, object2->pz);
3443 >      value = (threeVector1.Angle(threeVector2));
3444 >    }
3445 >  else if(variable == "alpha")
3446 >    {
3447 >      static const double pi = 3.1415926535897932384626433832795028841971693993751058;
3448 >      TVector3 threeVector1(object1->px, object1->py, object1->pz);
3449 >      TVector3 threeVector2(object2->px, object2->py, object2->pz);
3450 >      value = (pi-threeVector1.Angle(threeVector2));
3451 >    }
3452 >  else{clog << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
3453  
3454    value = applyFunction(function, value);
3455  
# Line 3043 | Line 3505 | OSUAnalysis::valueLookup (const BNelectr
3505      value = object2->correctedD0;
3506    }
3507  
3508 <  else{cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
3508 >  else{clog << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
3509  
3510    value = applyFunction(function, value);
3511  
3512    return value;
3513   }
3514 +
3515   //!electron-muon pair valueLookup
3516   double
3517   OSUAnalysis::valueLookup (const BNelectron* object1, const BNmuon* object2, string variable, string function, string &stringValue){
# Line 3109 | Line 3572 | OSUAnalysis::valueLookup (const BNelectr
3572    else if(variable == "muonRelPFdBetaIso"){
3573      value = (object2->pfIsoR04SumChargedHadronPt + max(0.0, object2->pfIsoR04SumNeutralHadronEt + object2->pfIsoR04SumPhotonEt - 0.5*object2->pfIsoR04SumPUPt)) / object2->pt;
3574    }
3575 <  else{cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
3575 >  else{clog << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
3576    value = applyFunction(function, value);
3577  
3578    return value;
3579 < }
3579 > } // end electron-muon pair valueLookup
3580 >
3581  
3582   //!electron-jet pair valueLookup
3583   double
# Line 3148 | Line 3612 | OSUAnalysis::valueLookup (const BNelectr
3612      value = object1->charge*object2->charge;
3613    }
3614  
3615 <  else{cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
3615 >  else{clog << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
3616 >  value = applyFunction(function, value);
3617 >
3618 >  return value;
3619 > }
3620 >
3621 > //!photon-jet pair valueLookup
3622 > double
3623 > OSUAnalysis::valueLookup (const BNphoton* object1, const BNjet* object2, string variable, string function, string &stringValue){
3624 >
3625 >  double value = 0.0;
3626 >
3627 >  if(variable == "deltaPhi") value = fabs(deltaPhi(object1->phi,object2->phi));
3628 >  else if(variable == "deltaEta") value = fabs(object1->eta - object2->eta);
3629 >  else if(variable == "jetEta") value = object2->eta;
3630 >  else if(variable == "jetPhi") value = object2->phi;
3631 >  else if(variable == "photonEta") value = object1->eta;
3632 >  else if(variable == "photonPhi") value = object1->phi;
3633 >  else if(variable == "photonGenMotherId") value = object1->genMotherId;
3634 >  else if(variable == "deltaR") value = deltaR(object1->eta,object1->phi,object2->eta,object2->phi);
3635 >  else if(variable == "invMass"){
3636 >    TLorentzVector fourVector1(object1->px, object1->py, object1->pz, object1->energy);
3637 >    TLorentzVector fourVector2(object2->px, object2->py, object2->pz, object2->energy);
3638 >    value = (fourVector1 + fourVector2).M();
3639 >  }
3640 >  else if(variable == "pt"){
3641 >    TLorentzVector fourVector1(object1->px, object1->py, object1->pz, object1->energy);
3642 >    TLorentzVector fourVector2(object2->px, object2->py, object2->pz, object2->energy);
3643 >    value = (fourVector1 + fourVector2).Pt();
3644 >  }
3645 >  else if(variable == "threeDAngle")
3646 >    {
3647 >      TVector3 threeVector1(object1->px, object1->py, object1->pz);
3648 >      TVector3 threeVector2(object2->px, object2->py, object2->pz);
3649 >      value = (threeVector1.Angle(threeVector2));
3650 >    }
3651 >  else{clog << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
3652 >  value = applyFunction(function, value);
3653 >
3654 >  return value;
3655 > }
3656 >
3657 > // track-jet pair valueLookup
3658 > double
3659 > OSUAnalysis::valueLookup (const BNtrack* object1, const BNjet* object2, string variable, string function, string &stringValue){
3660 >
3661 >  double value = 0.0;
3662 >
3663 >  if(variable == "deltaPhi") value = fabs(deltaPhi(object1->phi,object2->phi));
3664 >  else if(variable == "deltaR") value = deltaR(object1->eta,object1->phi,object2->eta,object2->phi);
3665 >
3666 >  else{clog << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
3667    value = applyFunction(function, value);
3668  
3669    return value;
3670 +
3671   }
3672  
3673 +
3674 +
3675 + // met-jet pair valueLookup
3676 + double
3677 + OSUAnalysis::valueLookup (const BNmet* object1, const BNjet* object2, string variable, string function, string &stringValue){
3678 +
3679 +  double value = 0.0;
3680 +
3681 +  if(variable == "deltaPhi") value = fabs(deltaPhi(object1->phi,object2->phi));
3682 +
3683 +  else{clog << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
3684 +  value = applyFunction(function, value);
3685 +
3686 +  return value;
3687 +
3688 + }  
3689 +
3690 +
3691 +
3692   //!muon-jet pair valueLookup
3693   double
3694   OSUAnalysis::valueLookup (const BNmuon* object1, const BNjet* object2, string variable, string function, string &stringValue){
# Line 3162 | Line 3697 | OSUAnalysis::valueLookup (const BNmuon*
3697  
3698    if(variable == "deltaPhi") value = fabs(deltaPhi(object1->phi,object2->phi));
3699    else if(variable == "jetEta") value = object2->eta;
3700 +  else if(variable == "relPFdBetaIso") value = (object1->pfIsoR04SumChargedHadronPt + max(0.0, object1->pfIsoR04SumNeutralHadronEt + object1->pfIsoR04SumPhotonEt - 0.5*object1->pfIsoR04SumPUPt)) / object1->pt;
3701 +  else if(variable == "jetPt") value = object2->pt;
3702    else if(variable == "jetPhi") value = object2->phi;
3703 +  else if(variable == "deltaPt") value = object1->pt - object2->pt;
3704    else if(variable == "muonEta") value = object1->eta;
3705 +  else if(variable == "muonPt") value = object1->pt;
3706    else if(variable == "muonPhi") value = object1->phi;
3707 <  else if(variable == "deltaEta") value = fabs(object1->eta - object2->eta);
3707 >  else if(variable == "deltaEta") value = fabs(object1->eta - object2->eta);          
3708    else if(variable == "deltaR") value = deltaR(object1->eta,object1->phi,object2->eta,object2->phi);
3709    else if(variable == "invMass"){
3710      TLorentzVector fourVector1(object1->px, object1->py, object1->pz, object1->energy);
# Line 3187 | Line 3726 | OSUAnalysis::valueLookup (const BNmuon*
3726      value = object1->charge*object2->charge;
3727    }
3728  
3729 <  else{cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
3729 >  else{clog << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
3730    value = applyFunction(function, value);
3731  
3732    return value;
3733   }
3734  
3735 + //!muon-event valueLookup
3736 + double
3737 + OSUAnalysis::valueLookup (const BNmuon* object1, const BNevent* object2, string variable, string function, string &stringValue){
3738 +
3739 +  double value = 0.0;
3740 +
3741 +  if(variable == "muonEta") value = object1->eta;
3742 +  else if(variable == "muonPt") value = object1->pt;
3743 +  else if(variable == "muonPhi") value = object1->phi;
3744 +  else if(variable == "Ht") value = getHt(jets.product());
3745 +  else if(variable == "pthat")   value = object2->pthat;
3746 +  else if(variable == "relPFdBetaIso") value = (object1->pfIsoR04SumChargedHadronPt + max(0.0, object1->pfIsoR04SumNeutralHadronEt + object1->pfIsoR04SumPhotonEt - 0.5*object1->pfIsoR04SumPUPt)) / object1->pt;
3747 +  else{clog << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
3748 +  value = applyFunction(function, value);
3749 +
3750 +  return value;
3751 + }
3752   //!jet-jet pair valueLookup
3753   double
3754   OSUAnalysis::valueLookup (const BNjet* object1, const BNjet* object2, string variable, string function, string &stringValue){
# Line 3201 | Line 3757 | OSUAnalysis::valueLookup (const BNjet* o
3757  
3758    if(variable == "deltaPhi") value = fabs(deltaPhi(object1->phi,object2->phi));
3759    else if(variable == "deltaEta") value = fabs(object1->eta - object2->eta);
3760 <  else if(variable == "absDeltaPt") value = fabs(object1->pt - object2->pt);
3760 >  else if(variable == "deltaPt") value = object1->pt - object2->pt;
3761    else if(variable == "deltaR") value = deltaR(object1->eta,object1->phi,object2->eta,object2->phi);
3762    else if(variable == "invMass"){
3763      TLorentzVector fourVector1(object1->px, object1->py, object1->pz, object1->energy);
# Line 3223 | Line 3779 | OSUAnalysis::valueLookup (const BNjet* o
3779      value = object1->charge*object2->charge;
3780    }
3781  
3782 <  else{cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
3782 >  else{clog << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
3783    value = applyFunction(function, value);
3784  
3785    return value;
3786   }
3787 +
3788   //!electron-track pair valueLookup
3789   double
3790   OSUAnalysis::valueLookup (const BNelectron* object1, const BNtrack* object2, string variable, string function, string &stringValue){
# Line 3247 | Line 3804 | OSUAnalysis::valueLookup (const BNelectr
3804    else if(variable == "chargeProduct"){
3805      value = object1->charge*object2->charge;
3806    }
3807 <  else{std::cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
3807 >  else{clog << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
3808    value = applyFunction(function, value);
3809    return value;
3810  
# Line 3275 | Line 3832 | OSUAnalysis::valueLookup (const BNmuon*
3832      value = object1->charge*object2->charge;
3833    }
3834  
3835 <  else{std::cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
3835 >  else{clog << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
3836    value = applyFunction(function, value);
3837    return value;
3838   }
# Line 3297 | Line 3854 | OSUAnalysis::valueLookup (const BNtau* o
3854      value = object1->charge*object2->charge;
3855    }
3856  
3857 <  else{std::cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
3857 >  else{clog << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
3858    value = applyFunction(function, value);
3859    return value;
3860   }
# Line 3319 | Line 3876 | OSUAnalysis::valueLookup (const BNmuon*
3876      value = object1->charge*object2->charge;
3877    }
3878  
3879 <  else{std::cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
3879 >  else{clog << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
3880    value = applyFunction(function, value);
3881    return value;
3882   }
# Line 3334 | Line 3891 | OSUAnalysis::valueLookup (const BNtau* o
3891      value = object1->charge*object2->charge;
3892    }
3893  
3894 <  else{std::cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
3894 >  else{clog << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
3895    value = applyFunction(function, value);
3896    return value;
3897   }
# Line 3354 | Line 3911 | OSUAnalysis::valueLookup (const BNtrack*
3911    else if (variable == "caloTotDeltaRp5_RhoCorr")    value = getTrkCaloTotRhoCorr(object1);
3912    else if (variable == "caloTotDeltaRp5ByP_RhoCorr") value = getTrkCaloTotRhoCorr(object1) / pMag;
3913  
3914 <  else { cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999; }
3914 >  else { clog << "WARNING: invalid variable '" << variable << "'\n"; value = -999; }
3915  
3916    value = applyFunction(function, value);
3917  
# Line 3376 | Line 3933 | OSUAnalysis::valueLookup (const BNelectr
3933        stringValue = "none";
3934    }
3935  
3936 <  else { cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999; }
3936 >  else { clog << "WARNING: invalid variable '" << variable << "'\n"; value = -999; }
3937  
3938    value = applyFunction(function, value);
3939  
# Line 3392 | Line 3949 | OSUAnalysis::valueLookup (const BNmuon*
3949  
3950    if (variable == "deltaR") value = deltaR(object1->eta,object1->phi,object2->eta,object2->phi);
3951  
3952 <  else { cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999; }
3952 >  else { clog << "WARNING: invalid variable '" << variable << "'\n"; value = -999; }
3953  
3954    value = applyFunction(function, value);
3955  
# Line 3495 | Line 4052 | OSUAnalysis::valueLookup (const BNstop*
4052      for(BNprimaryvertexCollection::const_iterator vertex = primaryvertexs->begin (); vertex != primaryvertexs->end (); vertex++){
4053        vertex_rank++;
4054        int dist = sqrt((object->vx-vertex->x)*(object->vx-vertex->x) + \
4055 <                      (object->vy-vertex->y)*(object->vy-vertex->y) + \
4056 <                      (object->vz-vertex->z)*(object->vz-vertex->z));
4055 >                      (object->vy-vertex->y)*(object->vy-vertex->y) + \
4056 >                      (object->vz-vertex->z)*(object->vz-vertex->z));
4057  
4058        if(abs(dist) < abs(minDistToVertex)){
4059          value = vertex_rank;
# Line 3505 | Line 4062 | OSUAnalysis::valueLookup (const BNstop*
4062      }
4063    }
4064  
4065 +  else if (variable == "decaysToTau"){
4066 +    value = abs (object->daughter0Id) == 15 || abs (object->daughter1Id) == 15;
4067 +  }
4068 +
4069  
4070  
4071  
4072 <  else { cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999; }
4072 >  else { clog << "WARNING: invalid variable '" << variable << "'\n"; value = -999; }
4073  
4074    value = applyFunction(function, value);
4075  
4076    return value;
4077  
4078 < }
4078 > } // end stop valueLookup
4079 >
4080  
4081  
4082  
# Line 3532 | Line 4094 | OSUAnalysis::getTrkIsIso (const BNtrack*
4094  
4095   }
4096  
4097 + //calculate the scalar sum of Jet Pt in the event.
4098 + double
4099 + OSUAnalysis::getHt (const BNjetCollection* jetColl){
4100 +  double Ht = 0;
4101 +  for(BNjetCollection::const_iterator jet = jetColl->begin(); jet !=jetColl->end(); jet++){
4102 +    Ht += abs(jet->pt);
4103 +  }
4104 +  return Ht;
4105 + }
4106  
4107   double
4108   OSUAnalysis::getTrkPtRes (const BNtrack* track1){
# Line 3569 | Line 4140 | OSUAnalysis::getTrkCaloTotRhoCorr(const
4140    // Return the pile-up (rho) corrected isolation energy, i.e., the total calorimeter energy around the candidate track.
4141    if (!useTrackCaloRhoCorr_) return -99;
4142    // if (!rhokt6CaloJetsHandle_) {
4143 <  //   cout << "ERROR [getTrkCaloTotRhoCorr]:  The collection rhokt6CaloJetsHandle is not available!" << endl;
4143 >  //   clog << "ERROR [getTrkCaloTotRhoCorr]:  The collection rhokt6CaloJetsHandle is not available!" << endl;
4144    //   return -99;
4145    // }
4146    double radDeltaRCone = 0.5;
# Line 3591 | Line 4162 | OSUAnalysis::WriteDeadEcal (){
4162    double etaEcal, phiEcal;
4163    ifstream DeadEcalFile(deadEcalFile_);
4164    if(!DeadEcalFile) {
4165 <    cout << "Error: DeadEcalFile has not been found." << endl;
4165 >    clog << "Error: DeadEcalFile has not been found." << endl;
4166      return;
4167    }
4168    if(DeadEcalVec.size()!= 0){
4169 <    cout << "Error: DeadEcalVec has a nonzero size" << endl;
4169 >    clog << "Error: DeadEcalVec has a nonzero size" << endl;
4170      return;
4171    }
4172    while(!DeadEcalFile.eof())
# Line 3606 | Line 4177 | OSUAnalysis::WriteDeadEcal (){
4177        newChan.phiEcal = phiEcal;
4178        DeadEcalVec.push_back(newChan);
4179      }
4180 <  if(DeadEcalVec.size() == 0) cout << "Warning: No dead Ecal channels have been found." << endl;
4180 >  if(DeadEcalVec.size() == 0) clog << "Warning: No dead Ecal channels have been found." << endl;
4181   }
4182  
4183   //if a track is found within dR<0.05 of a dead Ecal channel value = 1, otherwise value = 0
# Line 3646 | Line 4217 | OSUAnalysis::applyFunction(string functi
4217    else if(function == "log") value = log10(value);
4218  
4219    else if(function == "") value = value;
4220 <  else{cout << "WARNING: invalid function '" << function << "'\n";}
4220 >  else{clog << "WARNING: invalid function '" << function << "'\n";}
4221  
4222    return value;
4223  
# Line 3660 | Line 4231 | void OSUAnalysis::setObjectFlags(cut &cu
4231      string obj1, obj2;
4232      getTwoObjs(currentCut.inputCollection, obj1, obj2);
4233      if (inputType==obj1 ||
4234 <        inputType==obj2) {
4234 >        inputType==obj2) {
4235        // Do not add a cut to individualFlags or cumulativeFlags, if the cut is on a paired collection,
4236        // and the inputType is a member of the pair.
4237        // The cut will instead be applied when the setObjectFlags() is called for the paired collection.
# Line 3672 | Line 4243 | void OSUAnalysis::setObjectFlags(cut &cu
4243  
4244    for (uint object = 0; object != inputCollection->size(); object++){
4245  
4246 <    bool decision = true;//object passes if this cut doesn't cut on that type of object
4246 >    bool cutDecision = true;//object passes if this cut doesn't cut on that type of object
4247 >    bool plotDecision = true;
4248  
4249      if(currentCut.inputCollection == inputType){
4250  
# Line 3684 | Line 4256 | void OSUAnalysis::setObjectFlags(cut &cu
4256          else subcutDecisions.push_back(evaluateComparison(stringValue,currentCut.comparativeOperators.at(subcutIndex),currentCut.cutStringValues.at(subcutIndex)));
4257  
4258        }
4259 <      if(currentCut.numSubcuts == 1) decision = subcutDecisions.at(0);
4259 >      if(currentCut.numSubcuts == 1) cutDecision = subcutDecisions.at(0);
4260        else{
4261          bool tempDecision = true;
4262          for( int subcutIndex = 0;subcutIndex != currentCut.numSubcuts-1; subcutIndex++){
# Line 3693 | Line 4265 | void OSUAnalysis::setObjectFlags(cut &cu
4265            else if(currentCut.logicalOperators.at(subcutIndex) == "|"|| currentCut.logicalOperators.at(subcutIndex) == "||")
4266              tempDecision = subcutDecisions.at(subcutIndex) || subcutDecisions.at(subcutIndex+1);
4267          }
4268 <        decision = tempDecision;
4268 >        cutDecision = tempDecision;
4269        }
4270 +      //invert the cut for plotting if this cut is a veto
4271 +      if(currentCut.isVeto) plotDecision = !cutDecision;
4272 +      else plotDecision = cutDecision;
4273      }
4274  
4275 <    individualFlags.at(inputType).at(currentCutIndex).push_back(decision);
4275 >    individualFlags.at(inputType).at(currentCutIndex).push_back(make_pair(cutDecision,plotDecision));
4276  
4277 <    //set flags for objects that pass each cut AND all the previous cuts
4278 <    bool previousCumulativeFlag = true;
4277 >    //set flags for objects that pass this cut AND all the previous cuts
4278 >    bool previousCumulativeCutFlag = true;
4279 >    for(uint previousCutIndex = 0; previousCutIndex != currentCutIndex; previousCutIndex++){
4280 >      if(previousCumulativeCutFlag && individualFlags.at(inputType).at(previousCutIndex).at(object).first) previousCumulativeCutFlag = true;
4281 >      else{ previousCumulativeCutFlag = false; break;}
4282 >    }
4283 >    previousCumulativeCutFlag = previousCumulativeCutFlag && cutDecision;
4284 >    bool previousCumulativePlotFlag = true;
4285      for(uint previousCutIndex = 0; previousCutIndex != currentCutIndex; previousCutIndex++){
4286 <      if(previousCumulativeFlag && individualFlags.at(inputType).at(previousCutIndex).at(object)) previousCumulativeFlag = true;
4287 <      else{ previousCumulativeFlag = false; break;}
4286 >      if(previousCumulativePlotFlag && individualFlags.at(inputType).at(previousCutIndex).at(object).second) previousCumulativePlotFlag = true;
4287 >      else{ previousCumulativePlotFlag = false; break;}
4288      }
4289 <    cumulativeFlags.at(inputType).at(currentCutIndex).push_back(previousCumulativeFlag && decision);
4289 >    previousCumulativePlotFlag = previousCumulativePlotFlag && plotDecision;
4290 >
4291 >    cumulativeFlags.at(inputType).at(currentCutIndex).push_back(make_pair(previousCumulativeCutFlag,previousCumulativePlotFlag));
4292  
4293    }
4294  
# Line 3714 | Line 4297 | void OSUAnalysis::setObjectFlags(cut &cu
4297  
4298   template <class InputCollection1, class InputCollection2>
4299   void OSUAnalysis::setObjectFlags(cut &currentCut, uint currentCutIndex, flagMap &individualFlags, flagMap &cumulativeFlags, \
4300 <                                 InputCollection1 inputCollection1, InputCollection2 inputCollection2, vector<bool> flags1, vector<bool> flags2, string inputType){
4300 >                                 InputCollection1 inputCollection1, InputCollection2 inputCollection2, flagPair flags1, flagPair flags2, string inputType){
4301  
4302  
4303    bool sameObjects = false;
# Line 3730 | Line 4313 | void OSUAnalysis::setObjectFlags(cut &cu
4313    // Set them to true later, if any paired object passes (in which case both of its constituents should pass).
4314    if (currentCut.inputCollection == inputType) {
4315      for (uint object1 = 0; object1 != inputCollection1->size(); object1++) {
4316 <      individualFlags.at(obj1Type).at(currentCutIndex).push_back(false);
4317 <      cumulativeFlags.at(obj1Type).at(currentCutIndex).push_back(false);
4316 >      individualFlags.at(obj1Type).at(currentCutIndex).push_back(make_pair(false,false));
4317 >      cumulativeFlags.at(obj1Type).at(currentCutIndex).push_back(make_pair(false,false));
4318      }
4319      if (isTwoTypesOfObject) { // Only initialize the second object if it is different from the first.
4320        for (uint object2 = 0; object2 != inputCollection2->size(); object2++)  {
4321 <        individualFlags.at(obj2Type).at(currentCutIndex).push_back(false);
4322 <        cumulativeFlags.at(obj2Type).at(currentCutIndex).push_back(false);
4321 >        individualFlags.at(obj2Type).at(currentCutIndex).push_back(make_pair(false,false));
4322 >        cumulativeFlags.at(obj2Type).at(currentCutIndex).push_back(make_pair(false,false));
4323        }
4324      }
4325    }
# Line 3749 | Line 4332 | void OSUAnalysis::setObjectFlags(cut &cu
4332        if(sameObjects && object1 >= object2) continue;//account for duplicate pairs if both collections are the same
4333  
4334  
4335 <      bool decision = true;//object passes if this cut doesn't cut on that type of object
4335 >      bool cutDecision = true;//object passes if this cut doesn't cut on that type of object
4336 >      bool plotDecision = true;
4337  
4338        if(currentCut.inputCollection == inputType){
4339  
# Line 3761 | Line 4345 | void OSUAnalysis::setObjectFlags(cut &cu
4345            else subcutDecisions.push_back(evaluateComparison(stringValue,currentCut.comparativeOperators.at(subcutIndex),currentCut.cutStringValues.at(subcutIndex)));
4346          }
4347  
4348 <        if(currentCut.numSubcuts == 1) decision = subcutDecisions.at(0);
4348 >        if(currentCut.numSubcuts == 1) cutDecision = subcutDecisions.at(0);
4349          else{
4350            bool tempDecision = subcutDecisions.at(0);
4351            for( int subcutIndex = 1; subcutIndex < currentCut.numSubcuts; subcutIndex++){
# Line 3770 | Line 4354 | void OSUAnalysis::setObjectFlags(cut &cu
4354              else if(currentCut.logicalOperators.at(subcutIndex-1) == "|"|| currentCut.logicalOperators.at(subcutIndex-1) == "||")
4355                tempDecision = tempDecision || subcutDecisions.at(subcutIndex);
4356            }
4357 <          decision = tempDecision;
4357 >          cutDecision = tempDecision;
4358          }
4359 +        //invert the cut for plotting if this cut is a veto
4360 +        if(currentCut.isVeto) plotDecision = !cutDecision;
4361 +        else plotDecision = cutDecision;
4362 +      }
4363 +      individualFlags.at(inputType).at(currentCutIndex).push_back(make_pair(cutDecision,plotDecision));
4364 +      if (cutDecision && currentCut.inputCollection == inputType) {  // only set the flags for the individual objects if the pair object is being cut on
4365 +        individualFlags.at(obj1Type).at(currentCutIndex).at(object1).first = true;
4366 +        individualFlags.at(obj2Type).at(currentCutIndex).at(object2).first = true;
4367 +      }
4368 +      if (plotDecision && currentCut.inputCollection == inputType) {  // only set the flags for the individual objects if the pair object is being cut on
4369 +        individualFlags.at(obj1Type).at(currentCutIndex).at(object1).second = true;
4370 +        individualFlags.at(obj2Type).at(currentCutIndex).at(object2).second = true;
4371        }
4372 <      // if (decision) isPassObj1.at(object1) = true;
4373 <      // if (decision) isPassObj2.at(object2) = true;
4374 <      individualFlags.at(inputType).at(currentCutIndex).push_back(decision);
4375 <      if (decision && currentCut.inputCollection == inputType) {  // only set the flags for the individual objects if the pair object is being cut on
4376 <        individualFlags.at(obj1Type).at(currentCutIndex).at(object1) = true;
4377 <        individualFlags.at(obj2Type).at(currentCutIndex).at(object2) = true;
4372 >
4373 >      //set flags for objects that pass this cut AND all the previous cuts
4374 >      bool previousCumulativeCutFlag = true;
4375 >      for(uint previousCutIndex = 0; previousCutIndex != currentCutIndex; previousCutIndex++){
4376 >        if(previousCumulativeCutFlag && individualFlags.at(inputType).at(previousCutIndex).at(counter).first) previousCumulativeCutFlag = true;
4377 >        else{ previousCumulativeCutFlag = false; break;}
4378        }
4379 +      previousCumulativeCutFlag = previousCumulativeCutFlag && cutDecision;
4380  
4381 <      //set flags for objects that pass each cut AND all the previous cuts
3785 <      bool previousCumulativeFlag = true;
4381 >      bool previousCumulativePlotFlag = true;
4382        for(uint previousCutIndex = 0; previousCutIndex != currentCutIndex; previousCutIndex++){
4383 <        if(previousCumulativeFlag && individualFlags.at(inputType).at(previousCutIndex).at(counter)) previousCumulativeFlag = true;
4384 <        else{ previousCumulativeFlag = false; break;}
4383 >        if(previousCumulativePlotFlag && individualFlags.at(inputType).at(previousCutIndex).at(counter).second) previousCumulativePlotFlag = true;
4384 >        else{ previousCumulativePlotFlag = false; break;}
4385        }
4386 +      previousCumulativePlotFlag = previousCumulativePlotFlag && plotDecision;
4387 +      
4388        //apply flags for the components of the composite object as well
4389 <      bool currentCumulativeFlag = true;
4390 <      if(flags1.size() == 0 && flags2.size() == 0) currentCumulativeFlag = previousCumulativeFlag && decision;
4391 <      else if(flags1.size() == 0) currentCumulativeFlag = previousCumulativeFlag && decision && flags2.at(object2);
4392 <      else if(flags2.size() == 0) currentCumulativeFlag = previousCumulativeFlag && decision && flags1.at(object1);
4393 <      else currentCumulativeFlag = previousCumulativeFlag && decision && flags1.at(object1) && flags2.at(object2);
4394 <      cumulativeFlags.at(inputType).at(currentCutIndex).push_back(currentCumulativeFlag);
4395 <      if (currentCumulativeFlag && currentCut.inputCollection == inputType) {  // only set the flags for the individual objects if the pair object is being cut on
4396 <        cumulativeFlags.at(obj1Type).at(currentCutIndex).at(object1) = true && getPreviousCumulativeFlags(currentCutIndex, individualFlags, obj1Type, object1);
4397 <        cumulativeFlags.at(obj2Type).at(currentCutIndex).at(object2) = true && getPreviousCumulativeFlags(currentCutIndex, individualFlags, obj2Type, object2);
4389 >      bool currentCumulativeCutFlag = true;
4390 >      bool currentCumulativePlotFlag = true;
4391 >
4392 >      if(flags1.size() == 0 && flags2.size() == 0) currentCumulativeCutFlag = previousCumulativeCutFlag;
4393 >      else if(flags1.size() == 0) currentCumulativeCutFlag = previousCumulativeCutFlag && flags2.at(object2).first;
4394 >      else if(flags2.size() == 0) currentCumulativeCutFlag = previousCumulativeCutFlag && flags1.at(object1).first;
4395 >      else currentCumulativeCutFlag = previousCumulativeCutFlag && flags1.at(object1).first && flags2.at(object2).first;
4396 >
4397 >      if(flags1.size() == 0 && flags2.size() == 0) currentCumulativePlotFlag = previousCumulativePlotFlag;
4398 >      else if(flags1.size() == 0) currentCumulativePlotFlag = previousCumulativePlotFlag && flags2.at(object2).second;
4399 >      else if(flags2.size() == 0) currentCumulativePlotFlag = previousCumulativePlotFlag && flags1.at(object1).second;
4400 >      else currentCumulativePlotFlag = previousCumulativePlotFlag && flags1.at(object1).first && flags2.at(object2).second;
4401 >
4402 >      cumulativeFlags.at(inputType).at(currentCutIndex).push_back(make_pair(currentCumulativeCutFlag,currentCumulativePlotFlag));
4403 >
4404 >      if (currentCumulativeCutFlag && currentCut.inputCollection == inputType) {  // only set the flags for the individual objects if the pair object is being cut on
4405 >        cumulativeFlags.at(obj1Type).at(currentCutIndex).at(object1).first = true && getPreviousCumulativeFlags(currentCutIndex, individualFlags, obj1Type, object1, "cut");
4406 >        cumulativeFlags.at(obj2Type).at(currentCutIndex).at(object2).first = true && getPreviousCumulativeFlags(currentCutIndex, individualFlags, obj2Type, object2, "cut");
4407        }
4408 +
4409 +      if (currentCumulativePlotFlag && currentCut.inputCollection == inputType) {  // only set the flags for the individual objects if the pair object is being cut on
4410 +        cumulativeFlags.at(obj1Type).at(currentCutIndex).at(object1).second = true && getPreviousCumulativeFlags(currentCutIndex, individualFlags, obj1Type, object1, "plot");
4411 +        cumulativeFlags.at(obj2Type).at(currentCutIndex).at(object2).second = true && getPreviousCumulativeFlags(currentCutIndex, individualFlags, obj2Type, object2, "plot");
4412 +      }
4413 +
4414        counter++;
4415  
4416      } // end   for (uint object2 = 0; object2 != inputCollection2->size(); object2++)
# Line 3806 | Line 4419 | void OSUAnalysis::setObjectFlags(cut &cu
4419   }
4420  
4421  
4422 < bool OSUAnalysis::getPreviousCumulativeFlags(uint currentCutIndex, flagMap &individualFlags, string obj1Type, uint object1) {
4422 > bool OSUAnalysis::getPreviousCumulativeFlags(uint currentCutIndex, flagMap &individualFlags, string obj1Type, uint object1, string flagType) {
4423    // Return true iff for the collection obj1Type, the element with index object1 has individal flags set to true for
4424    // all cuts up to currentCutIndex
4425    bool previousCumulativeFlag = true;
4426    for (uint previousCutIndex = 0; previousCutIndex < currentCutIndex; previousCutIndex++) {
4427 <    if (previousCumulativeFlag && individualFlags.at(obj1Type).at(previousCutIndex).at(object1)) previousCumulativeFlag = true;
4427 >    bool tempFlag = false;
4428 >    if(flagType == "cut") tempFlag = individualFlags.at(obj1Type).at(previousCutIndex).at(object1).first;
4429 >    else if(flagType == "plot") tempFlag = individualFlags.at(obj1Type).at(previousCutIndex).at(object1).second;
4430 >
4431 >    if (previousCumulativeFlag && tempFlag) previousCumulativeFlag = true;
4432      else {
4433        previousCumulativeFlag = false; break;
4434      }
# Line 3821 | Line 4438 | bool OSUAnalysis::getPreviousCumulativeF
4438  
4439  
4440  
4441 +
4442   template <class InputCollection>
4443 < void OSUAnalysis::assignTreeBranch(BranchSpecs parameters, InputCollection inputCollection, vector<bool> flags){
4444 <  // This function is similar to fill1DHistogram(), but instead of filling a histogram it assigns a value to a variable for the BNTree  
4443 > void OSUAnalysis::assignTreeBranch(BranchSpecs parameters, InputCollection inputCollection, flagPair flags){
4444 >  // This function is similar to fill1DHistogram(), but instead of filling a histogram it assigns a value to a variable for the BNTree
4445  
4446 <  if (BNTreeBranchVals_.count(parameters.name)==0) cout << "Error[assignTreeBranch]:  trying to assign value to " << parameters.name << " that does not have a branch set up.  Will likely seg fault." << endl;  
4447 <  for (uint object = 0; object != inputCollection->size(); object++) {  
4446 >  if (BNTreeBranchVals_.count(parameters.name)==0) clog << "Error[assignTreeBranch]:  trying to assign value to " << parameters.name << " that does not have a branch set up.  Will likely seg fault." << endl;
4447 >  for (uint object = 0; object != inputCollection->size(); object++) {
4448  
4449 <    if (!plotAllObjectsInPassingEvents_ && !flags.at(object)) continue;  
4449 >    if (!plotAllObjectsInPassingEvents_ && !flags.at(object).second) continue;
4450  
4451 <    string inputVariable = parameters.inputVariable;
4451 >    string inputVariable = parameters.inputVariable;
4452      string function = "";
4453 <    string stringValue = "";  
4454 <    double value = valueLookup(&inputCollection->at(object), inputVariable, function, stringValue);  
4455 <    BNTreeBranchVals_.at(parameters.name).push_back(value);  
4453 >    string stringValue = "";
4454 >    double value = valueLookup(&inputCollection->at(object), inputVariable, function, stringValue);
4455 >    BNTreeBranchVals_.at(parameters.name).push_back(value);
4456  
4457    }
4458   }
4459  
4460  
4461   template <class InputCollection>
4462 < void OSUAnalysis::fill1DHistogram(TH1* histo, histogram parameters, InputCollection inputCollection,vector<bool> flags, double scaleFactor){
4462 > void OSUAnalysis::fill1DHistogram(TH1* histo, histogram parameters, InputCollection inputCollection, flagPair flags, double scaleFactor){
4463 >
4464  
4465    for (uint object = 0; object != inputCollection->size(); object++){
4466  
4467 <    if(!plotAllObjectsInPassingEvents_ && !flags.at(object)) continue;
4467 >    if(!plotAllObjectsInPassingEvents_ && !flags.at(object).second) continue;
4468  
4469      string currentString = parameters.inputVariables.at(0);
4470      string inputVariable = "";
# Line 3857 | Line 4476 | void OSUAnalysis::fill1DHistogram(TH1* h
4476        function = currentString.substr(0,currentString.find("("));//function comes before the "("
4477        inputVariable = currentString.substr(currentString.find("(")+1);//get rest of string
4478        inputVariable = inputVariable.substr(0,inputVariable.size()-1);//remove trailing ")"
4479 <    }  
4479 >    }
4480  
4481 <    string stringValue = "";  
4482 <    double value = valueLookup(&inputCollection->at(object), inputVariable, function, stringValue);  
4483 <    histo->Fill(value,scaleFactor);  
4481 >    string stringValue = "";
4482 >    double value = valueLookup(&inputCollection->at(object), inputVariable, function, stringValue);
4483 >    histo->Fill(value,scaleFactor);
4484  
4485      if (printEventInfo_) {
4486        // Write information about event to screen, for testing purposes.
4487 <      cout << "  Info for event:  value for histogram " << histo->GetName() << ":  " << value << endl;
4487 >      clog << "  Info for event:  value for histogram " << histo->GetName() << ":  " << value << endl;
4488      }
4489  
4490    }
4491   }
4492  
4493   template <class InputCollection1, class InputCollection2>
4494 < void OSUAnalysis::fill1DHistogram(TH1* histo, histogram parameters, InputCollection1 inputCollection1, InputCollection2 inputCollection2, vector<bool> flags1, vector<bool> flags2, vector<bool> pairFlags, double scaleFactor){
4494 > void OSUAnalysis::fill1DHistogram(TH1* histo, histogram parameters, InputCollection1 inputCollection1, InputCollection2 inputCollection2, flagPair flags1, flagPair flags2, flagPair pairFlags, double scaleFactor){
4495  
4496    bool sameObjects = false;
4497    if(typeid(InputCollection1).name() == typeid(InputCollection2).name()) sameObjects = true;
# Line 3885 | Line 4504 | void OSUAnalysis::fill1DHistogram(TH1* h
4504  
4505        pairCounter++;
4506        //only take objects which have passed all cuts and pairs which have passed all cuts
4507 <      if(!plotAllObjectsInPassingEvents_ && !flags1.at(object1)) continue;
4508 <      if(!plotAllObjectsInPassingEvents_ && !flags2.at(object2)) continue;
4509 <      if(!plotAllObjectsInPassingEvents_ && !pairFlags.at(pairCounter)) continue;
4507 >      if(!plotAllObjectsInPassingEvents_ && !flags1.at(object1).second) continue;
4508 >      if(!plotAllObjectsInPassingEvents_ && !flags2.at(object2).second) continue;
4509 >      if(!plotAllObjectsInPassingEvents_ && !pairFlags.at(pairCounter).second) continue;
4510  
4511        string currentString = parameters.inputVariables.at(0);
4512        string inputVariable = "";
# Line 3912 | Line 4531 | void OSUAnalysis::fill1DHistogram(TH1* h
4531  
4532  
4533   template <class InputCollection>
4534 < void OSUAnalysis::fill2DHistogram(TH2* histo, histogram parameters, InputCollection inputCollection,vector<bool> flags, double scaleFactor){
4534 > void OSUAnalysis::fill2DHistogram(TH2* histo, histogram parameters, InputCollection inputCollection, flagPair flags, double scaleFactor){
4535  
4536    for (uint object = 0; object != inputCollection->size(); object++){
4537  
4538 <    if(!plotAllObjectsInPassingEvents_ && !flags.at(object)) continue;
4538 >    if(!plotAllObjectsInPassingEvents_ && !flags.at(object).second) continue;
4539  
4540      string stringValue = "";
4541      string currentString = parameters.inputVariables.at(0);
# Line 3953 | Line 4572 | void OSUAnalysis::fill2DHistogram(TH2* h
4572   }
4573  
4574   template <class InputCollection1, class InputCollection2>
4575 < void OSUAnalysis::fill2DHistogram(TH2* histo, histogram parameters, InputCollection1 inputCollection1, InputCollection2 inputCollection2, vector<bool> flags1, vector<bool> flags2, vector<bool> pairFlags, double scaleFactor){
4575 > void OSUAnalysis::fill2DHistogram(TH2* histo, histogram parameters, InputCollection1 inputCollection1, InputCollection2 inputCollection2, flagPair flags1, flagPair flags2, flagPair pairFlags, double scaleFactor){
4576  
4577    bool sameObjects = false;
4578    if(typeid(InputCollection1).name() == typeid(InputCollection2).name()) sameObjects = true;
# Line 3967 | Line 4586 | void OSUAnalysis::fill2DHistogram(TH2* h
4586        pairCounter++;
4587  
4588        //only take objects which have passed all cuts and pairs which have passed all cuts
4589 <      if(!plotAllObjectsInPassingEvents_ && !flags1.at(object1)) continue;
4590 <      if(!plotAllObjectsInPassingEvents_ && !flags2.at(object2)) continue;
4591 <      if(!plotAllObjectsInPassingEvents_ && !pairFlags.at(pairCounter)) continue;
4589 >      if(!plotAllObjectsInPassingEvents_ && !flags1.at(object1).second) continue;
4590 >      if(!plotAllObjectsInPassingEvents_ && !flags2.at(object2).second) continue;
4591 >      if(!plotAllObjectsInPassingEvents_ && !pairFlags.at(pairCounter).second) continue;
4592  
4593        string stringValue = "";
4594        string currentString = parameters.inputVariables.at(0);
# Line 4017 | Line 4636 | int OSUAnalysis::getGenMatchedParticleIn
4636  
4637      double currentDeltaR = deltaR(object->eta,object->phi,mcparticle->eta,mcparticle->phi);
4638      if(currentDeltaR > 0.05) continue;
4639 <    //     cout << setprecision(3) << setw(20)
4639 >    //     clog << setprecision(3) << setw(20)
4640      //          << "\tcurrentParticle:  eta = " << mcparticles->at(mcparticle - mcparticles->begin()).eta
4641      //          << setw(20)
4642      //          << "\tphi = " << mcparticles->at(mcparticle - mcparticles->begin()).phi
# Line 4036 | Line 4655 | int OSUAnalysis::getGenMatchedParticleIn
4655      }
4656  
4657    }
4658 <  //   if(bestMatchDeltaR != 999)  cout << "bestMatch:  deltaR = " << bestMatchDeltaR << "   id = " << mcparticles->at(bestMatchIndex).id << "   motherId = " << mcparticles->at(bestMatchIndex).motherId << endl;
4659 <  //   else cout << "no match found..." << endl;
4658 >  //   if(bestMatchDeltaR != 999)  clog << "bestMatch:  deltaR = " << bestMatchDeltaR << "   id = " << mcparticles->at(bestMatchIndex).id << "   motherId = " << mcparticles->at(bestMatchIndex).motherId << endl;
4659 >  //   else clog << "no match found..." << endl;
4660    return bestMatchIndex;
4661  
4662   }
# Line 4129 | Line 4748 | OSUAnalysis::chosenVertex ()
4748   {
4749    const BNprimaryvertex *chosenVertex = 0;
4750    if(cumulativeFlags.find ("primaryvertexs") != cumulativeFlags.end ()){
4751 <    vector<bool> vertexFlags;
4751 >    flagPair vertexFlags;
4752      for (int i = cumulativeFlags.at("primaryvertexs").size() - 1; i >= 0; i--){
4753        if (cumulativeFlags.at("primaryvertexs").at(i).size()){
4754          vertexFlags = cumulativeFlags.at("primaryvertexs").at(i);
# Line 4137 | Line 4756 | OSUAnalysis::chosenVertex ()
4756        }
4757      }
4758      for (uint vertexIndex = 0; vertexIndex != vertexFlags.size(); vertexIndex++){
4759 <      if(!vertexFlags.at(vertexIndex)) continue;
4759 >      if(!vertexFlags.at(vertexIndex).first) continue;
4760        chosenVertex = & primaryvertexs->at(vertexIndex);
4761        break;
4762      }
# Line 4153 | Line 4772 | OSUAnalysis::chosenMET ()
4772   {
4773    const BNmet *chosenMET = 0;
4774    if(cumulativeFlags.find ("mets") != cumulativeFlags.end ()){
4775 <    vector<bool> metFlags;
4775 >    flagPair metFlags;
4776      for (int i = cumulativeFlags.at("mets").size() - 1; i >= 0; i--){
4777        if (cumulativeFlags.at("mets").at(i).size()){
4778          metFlags = cumulativeFlags.at("mets").at(i);
# Line 4161 | Line 4780 | OSUAnalysis::chosenMET ()
4780        }
4781      }
4782      for (uint metIndex = 0; metIndex != metFlags.size(); metIndex++){
4783 <      if(!metFlags.at(metIndex)) continue;
4783 >      if(!metFlags.at(metIndex).first) continue;
4784        chosenMET = & mets->at(metIndex);
4785        break;
4786      }
# Line 4177 | Line 4796 | OSUAnalysis::chosenElectron ()
4796   {
4797    const BNelectron *chosenElectron = 0;
4798    if(cumulativeFlags.find ("electrons") != cumulativeFlags.end ()){
4799 <    vector<bool> electronFlags;
4799 >    flagPair electronFlags;
4800      for (int i = cumulativeFlags.at("electrons").size() - 1; i >= 0; i--){
4801        if (cumulativeFlags.at("electrons").at(i).size()){
4802          electronFlags = cumulativeFlags.at("electrons").at(i);
# Line 4185 | Line 4804 | OSUAnalysis::chosenElectron ()
4804        }
4805      }
4806      for (uint electronIndex = 0; electronIndex != electronFlags.size(); electronIndex++){
4807 <      if(!electronFlags.at(electronIndex)) continue;
4807 >      if(!electronFlags.at(electronIndex).first) continue;
4808        chosenElectron = & electrons->at(electronIndex);
4809        break;
4810      }
# Line 4196 | Line 4815 | OSUAnalysis::chosenElectron ()
4815    return chosenElectron;
4816   }
4817  
4818 +
4819   const BNmuon *
4820   OSUAnalysis::chosenMuon ()
4821   {
4822    const BNmuon *chosenMuon = 0;
4823    if(cumulativeFlags.find ("muons") != cumulativeFlags.end ()){
4824 <    vector<bool> muonFlags;
4824 >    flagPair muonFlags;
4825      for (int i = cumulativeFlags.at("muons").size() - 1; i >= 0; i--){
4826        if (cumulativeFlags.at("muons").at(i).size()){
4827          muonFlags = cumulativeFlags.at("muons").at(i);
# Line 4209 | Line 4829 | OSUAnalysis::chosenMuon ()
4829        }
4830      }
4831      for (uint muonIndex = 0; muonIndex != muonFlags.size(); muonIndex++){
4832 <      if(!muonFlags.at(muonIndex)) continue;
4832 >      if(!muonFlags.at(muonIndex).first) continue;
4833        chosenMuon = & muons->at(muonIndex);
4834        break;
4835      }
# Line 4220 | Line 4840 | OSUAnalysis::chosenMuon ()
4840    return chosenMuon;
4841   }
4842  
4843 + double
4844 + OSUAnalysis::chosenHT ()
4845 + {
4846 +  double chosenHT = 0.0;
4847 +  if(cumulativeFlags.find ("jets") != cumulativeFlags.end ()){
4848 +    flagPair jetFlags;
4849 +    for (int i = cumulativeFlags.at("jets").size() - 1; i >= 0; i--){
4850 +      if (cumulativeFlags.at("jets").at(i).size()){
4851 +        jetFlags = cumulativeFlags.at("jets").at(i);
4852 +        break;
4853 +      }
4854 +    }
4855 +    for (uint jetIndex = 0; jetIndex != jetFlags.size(); jetIndex++){
4856 +      if(!jetFlags.at(jetIndex).first) continue;
4857 +      chosenHT += jets->at(jetIndex).pt;
4858 +    }
4859 +  }
4860 +
4861 +  return chosenHT;
4862 + }
4863 +
4864 + pair<const BNmuon *, const BNmuon *>
4865 + OSUAnalysis::leadMuonPair ()
4866 + {
4867 +  pair<const BNmuon *, const BNmuon *> leadMuonPair;
4868 +  leadMuonPair.first = leadMuonPair.second = 0;
4869 +
4870 +  if(cumulativeFlags.find ("muons") != cumulativeFlags.end ()){
4871 +    flagPair muonFlags;
4872 +    for (int i = cumulativeFlags.at("muons").size() - 1; i >= 0; i--){
4873 +      if (cumulativeFlags.at("muons").at(i).size()){
4874 +        muonFlags = cumulativeFlags.at("muons").at(i);
4875 +        break;
4876 +      }
4877 +    }
4878 +    for (uint muonIndex0 = 0; muonIndex0 != muonFlags.size(); muonIndex0++){
4879 +      if(!muonFlags.at(muonIndex0).first) continue;
4880 +      for (uint muonIndex1 = muonIndex0 + 1; muonIndex1 < muonFlags.size(); muonIndex1++){
4881 +        if(!muonFlags.at(muonIndex1).first) continue;
4882 +        const BNmuon *mu0 = & muons->at(muonIndex0);
4883 +        const BNmuon *mu1 = & muons->at(muonIndex1);
4884 +        if(leadMuonPair.first == 0 || leadMuonPair.second == 0){
4885 +          leadMuonPair.first = mu0;
4886 +          leadMuonPair.second = mu1;
4887 +        }
4888 +        else{
4889 +          TVector2 newPt0 (mu0->px, mu0->py),
4890 +                   newPt1 (mu1->px, mu1->py),
4891 +                   oldPt0 (leadMuonPair.first->px, leadMuonPair.first->py),
4892 +                   oldPt1 (leadMuonPair.second->px, leadMuonPair.second->py);
4893 +          if(newPt0.Mod () + newPt1.Mod () > oldPt0.Mod() + oldPt1.Mod ())
4894 +            {
4895 +              leadMuonPair.first = mu0;
4896 +              leadMuonPair.second = mu1;
4897 +            }
4898 +        }
4899 +      }
4900 +    }
4901 +  }
4902 +
4903 +  return leadMuonPair;
4904 + }
4905 +
4906 + pair<const BNelectron *, const BNelectron *>
4907 + OSUAnalysis::leadElectronPair ()
4908 + {
4909 +  pair<const BNelectron *, const BNelectron *> leadElectronPair;
4910 +  leadElectronPair.first = leadElectronPair.second = 0;
4911 +  if(cumulativeFlags.find ("electrons") != cumulativeFlags.end ()){
4912 +    flagPair electronFlags;
4913 +    for (int i = cumulativeFlags.at("electrons").size() - 1; i >= 0; i--){
4914 +      if (cumulativeFlags.at("electrons").at(i).size()){
4915 +        electronFlags = cumulativeFlags.at("electrons").at(i);
4916 +        break;
4917 +      }
4918 +    }
4919 +    for (uint electronIndex0 = 0; electronIndex0 != electronFlags.size(); electronIndex0++){
4920 +      if(!electronFlags.at(electronIndex0).first) continue;
4921 +      for (uint electronIndex1 = electronIndex0 + 1; electronIndex1 < electronFlags.size(); electronIndex1++){
4922 +        if(!electronFlags.at(electronIndex1).first) continue;
4923 +        const BNelectron *el0 = & electrons->at(electronIndex0);
4924 +        const BNelectron *el1 = & electrons->at(electronIndex1);
4925 +        if(leadElectronPair.first == 0 || leadElectronPair.second == 0){
4926 +          leadElectronPair.first = el0;
4927 +          leadElectronPair.second = el1;
4928 +        }
4929 +        else{
4930 +          TVector2 newPt0 (el0->px, el0->py),
4931 +                   newPt1 (el1->px, el1->py),
4932 +                   oldPt0 (leadElectronPair.first->px, leadElectronPair.first->py),
4933 +                   oldPt1 (leadElectronPair.second->px, leadElectronPair.second->py);
4934 +          if(newPt0.Mod () + newPt1.Mod () > oldPt0.Mod() + oldPt1.Mod ())
4935 +            {
4936 +              leadElectronPair.first = el0;
4937 +              leadElectronPair.second = el1;
4938 +            }
4939 +        }
4940 +      }
4941 +    }
4942 +  }
4943 +
4944 +  return leadElectronPair;
4945 + }
4946 +
4947   DEFINE_FWK_MODULE(OSUAnalysis);

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