[ViewVC] Diff of: cvsroot/UserCode/OSUT3Analysis/AnaTools/plugins/OSUAnalysis.cc

Comparing UserCode/OSUT3Analysis/AnaTools/plugins/OSUAnalysis.cc (file contents):
Revision 1.6 by lantonel, Wed Jan 30 16:28:22 2013 UTC vs.
Revision 1.83 by biliu, Wed Jun 5 03:18:56 2013 UTC

+  tracks_ (cfg.getParameter<edm::InputTag> ("tracks")),
+  genjets_ (cfg.getParameter<edm::InputTag> ("genjets")),
+  mcparticles_ (cfg.getParameter<edm::InputTag> ("mcparticles")),
-+
+  stops_ (cfg.getParameter<edm::InputTag> ("stops")),
+  primaryvertexs_ (cfg.getParameter<edm::InputTag> ("primaryvertexs")),
+  bxlumis_ (cfg.getParameter<edm::InputTag> ("bxlumis")),
+  photons_ (cfg.getParameter<edm::InputTag> ("photons")),
+  superclusters_ (cfg.getParameter<edm::InputTag> ("superclusters")),
+  triggers_ (cfg.getParameter<edm::InputTag> ("triggers")),
-+
+  trigobjs_ (cfg.getParameter<edm::InputTag> ("trigobjs")),
-+
+  puFile_ (cfg.getParameter<string> ("puFile")),
-+
+  deadEcalFile_ (cfg.getParameter<string> ("deadEcalFile")),
-+
+  muonSFFile_ (cfg.getParameter<string> ("muonSFFile")),
-+
+  dataPU_ (cfg.getParameter<string> ("dataPU")),
-+
+  electronSFID_ (cfg.getParameter<string> ("electronSFID")),
-+
+  muonSF_ (cfg.getParameter<string> ("muonSF")),
-+
+  dataset_ (cfg.getParameter<string> ("dataset")),
-+
+  datasetType_ (cfg.getParameter<string> ("datasetType")),
-+
+  channels_  (cfg.getParameter<vector<edm::ParameterSet> >("channels")),
-+
+  histogramSets_ (cfg.getParameter<vector<edm::ParameterSet> >("histogramSets")),
-+
+  treeBranchSets_   (cfg.getParameter<vector<edm::ParameterSet> >("treeBranchSets")),
-+
+  plotAllObjectsInPassingEvents_ (cfg.getParameter<bool> ("plotAllObjectsInPassingEvents")),
-+
+  doPileupReweighting_ (cfg.getParameter<bool> ("doPileupReweighting")),
-+
+  applyLeptonSF_ (cfg.getParameter<bool> ("applyLeptonSF")),
-+
+  applyBtagSF_ (cfg.getParameter<bool> ("applyBtagSF")),
-+
+  minBtag_ (cfg.getParameter<int> ("minBtag")),
-+
+  maxBtag_ (cfg.getParameter<int> ("maxBtag")),
-+
+  printEventInfo_      (cfg.getParameter<bool> ("printEventInfo")),
-+
+  printAllTriggers_    (cfg.getParameter<bool> ("printAllTriggers")),
-+
+  useTrackCaloRhoCorr_ (cfg.getParameter<bool> ("useTrackCaloRhoCorr")),
-+
+  stopCTau_ (cfg.getParameter<vector<double> > ("stopCTau")),
-+
+  GetPlotsAfterEachCut_ (cfg.getParameter<bool> ("GetPlotsAfterEachCut"))
-+
+ {
-+
+  TH1::SetDefaultSumw2 ();
-<
+  channels_  (cfg.getParameter<vector<edm::ParameterSet> >("channels"))
->
+  //create pile-up reweighting object, if necessary
->
+  if(datasetType_ != "data") {
->
+    if(doPileupReweighting_) puWeight_ = new PUWeight (puFile_, dataPU_, dataset_);
->
+    if (applyLeptonSF_){
->
+      muonSFWeight_ = new MuonSFWeight (muonSFFile_, muonSF_);
->
+      electronSFWeight_ = new ElectronSFWeight ("53X", electronSFID_);
->
+    }
->
+    if (applyBtagSF_){
->
+      bTagSFWeight_ = new BtagSFWeight;
->
+    }
->
+  }
->
+  if (datasetType_ == "signalMC" && regex_match (dataset_, regex ("stop.*to.*_.*mm.*")))
->
+    stopCTauWeight_ = new StopCTauWeight (stopCTau_.at (0), stopCTau_.at (1), stops_);
-–
+{
-–
+  TH1::SetDefaultSumw2 ();
+  // Construct Cutflow Objects. These store the results of cut decisions and
+  // handle filling cut flow histograms.
+  masterCutFlow_ = new CutFlow (fs_);
-<
+  std::vector<TFileDirectory> directories;
->
->
+  //always get vertex collection so we can assign the primary vertex in the event
->
+  objectsToGet.push_back("primaryvertexs");
->
+  objectsToPlot.push_back("primaryvertexs");
->
+  objectsToCut.push_back("primaryvertexs");
->
->
->
+  //always get the MC particles to do GEN-matching
->
+  objectsToGet.push_back("mcparticles");
->
->
+  //always get the event collection to do pile-up reweighting
->
+  objectsToGet.push_back("events");
->
->
->
+  // Parse the tree variable definitions.
->
+  for (uint iBranchSet = 0; iBranchSet<treeBranchSets_.size(); iBranchSet++) {
->
+    string tempInputCollection = treeBranchSets_.at(iBranchSet).getParameter<string> ("inputCollection");
->
+    if(tempInputCollection.find("pairs")!=string::npos) { cout << "Warning:  tree filling is not configured for pairs of objects, so will not work for collection: " << tempInputCollection << endl; }
->
+    objectsToGet.push_back(tempInputCollection);
->
+    objectsToCut.push_back(tempInputCollection);
->
->
+    vector<string> branchList(treeBranchSets_.at(iBranchSet).getParameter<vector<string> >("branches"));
->
->
+    for (uint iBranch = 0; iBranch<branchList.size(); iBranch++) {
->
+      BranchSpecs br;
->
+      br.inputCollection = tempInputCollection;
->
+      br.inputVariable = branchList.at(iBranch);
->
+      TString newName = TString(br.inputCollection) + "_" + TString(br.inputVariable);
->
+      br.name = string(newName.Data());
->
+      treeBranches_.push_back(br);
->
+    }
->
->
+  } // end   for (uint iBranchSet = 0; iBranchSet<treeBranchSets_.size(); iBranchSet++) {
->
->
->
+  //parse the histogram definitions
->
+  for(uint currentHistogramSet = 0; currentHistogramSet != histogramSets_.size(); currentHistogramSet++){
->
->
+    string tempInputCollection = histogramSets_.at(currentHistogramSet).getParameter<string> ("inputCollection");
->
+    if(tempInputCollection == "muon-electron pairs") tempInputCollection = "electron-muon pairs";
->
+    if(tempInputCollection == "jet-electron pairs") tempInputCollection = "electron-jet pairs";
->
+    if(tempInputCollection == "jet-muon pairs") tempInputCollection = "muon-jet pairs";
->
+    if(tempInputCollection == "event-track pairs")   tempInputCollection = "track-event pairs";
->
+    if(tempInputCollection == "secondary muon-muon pairs")   tempInputCollection = "muon-secondary muon pairs";
->
+    if(tempInputCollection == "secondary electron-electron pairs")   tempInputCollection = "electron-secondary electron pairs";
->
+    if(tempInputCollection == "trigobj-electron pairs")   tempInputCollection = "electron-trigobj pairs";
->
+    if(tempInputCollection == "trigobj-muon pairs")   tempInputCollection = "muon-trigobj pairs";
->
+    if(tempInputCollection.find("pairs")==string::npos){ //just a single object
->
+      if(tempInputCollection.find("secondary")!=string::npos){//secondary object
->
+        int spaceIndex = tempInputCollection.find(" ");
->
+        int secondWordLength = tempInputCollection.size() - spaceIndex;
->
+        objectsToGet.push_back(tempInputCollection.substr(spaceIndex+1,secondWordLength));
->
+      }
->
+      else{
->
+        objectsToGet.push_back(tempInputCollection);
->
+      }
->
+      objectsToPlot.push_back(tempInputCollection);
->
+      objectsToCut.push_back(tempInputCollection);
->
+    } else { //pair of objects, need to add the pair and the individual objects to the lists of things to Get/Plot/Cut
->
+      string obj1;
->
+      string obj2;
->
+      getTwoObjs(tempInputCollection, obj1, obj2);
->
+      string obj2ToGet = getObjToGet(obj2);
->
+      objectsToCut.push_back(tempInputCollection);
->
+      objectsToCut.push_back(obj1);
->
+      objectsToCut.push_back(obj2);
->
+      objectsToPlot.push_back(tempInputCollection);
->
+      objectsToPlot.push_back(obj1);
->
+      objectsToPlot.push_back(obj2);
->
+      objectsToGet.push_back(tempInputCollection);
->
+      objectsToGet.push_back(obj1);
->
+      objectsToGet.push_back(obj2ToGet);
->
+    } // end else
->
->
->
->
+    vector<edm::ParameterSet> histogramList_  (histogramSets_.at(currentHistogramSet).getParameter<vector<edm::ParameterSet> >("histograms"));
->
->
+    for(uint currentHistogram = 0; currentHistogram != histogramList_.size(); currentHistogram++){
->
->
+      vector<double> defaultValue;
->
+      defaultValue.push_back (-1.0);
->
->
+      histogram tempHistogram;
->
+      tempHistogram.inputCollection = tempInputCollection;
->
+      tempHistogram.name = histogramList_.at(currentHistogram).getParameter<string>("name");
->
+      tempHistogram.title = histogramList_.at(currentHistogram).getParameter<string>("title");
->
+      tempHistogram.bins = histogramList_.at(currentHistogram).getUntrackedParameter<vector<double> >("bins", defaultValue);
->
+      tempHistogram.variableBinsX = histogramList_.at(currentHistogram).getUntrackedParameter<vector<double> >("variableBinsX", defaultValue);
->
+      tempHistogram.variableBinsY = histogramList_.at(currentHistogram).getUntrackedParameter<vector<double> >("variableBinsY", defaultValue);
->
+      tempHistogram.inputVariables = histogramList_.at(currentHistogram).getParameter<vector<string> >("inputVariables");
->
->
+      histograms.push_back(tempHistogram);
->
->
+    }
->
+  } //   for(uint currentHistogramSet = 0; currentHistogramSet != histogramSets_.size(); currentHistogramSet++){
->
->
+  //make unique vector of objects we need to plot (so we can book a histogram with the number of each object)
->
+  sort( objectsToPlot.begin(), objectsToPlot.end() );
->
+  objectsToPlot.erase( unique( objectsToPlot.begin(), objectsToPlot.end() ), objectsToPlot.end() );
->
->
->
->
+  //add histograms with the gen-matched id, mother id, and grandmother id
->
+  for(uint currentObjectIndex = 0; currentObjectIndex != objectsToPlot.size(); currentObjectIndex++){
->
->
+    string currentObject = objectsToPlot.at(currentObjectIndex);
->
+    if(currentObject != "muons" && currentObject != "secondary muons" && currentObject != "secondary electrons" && currentObject != "electrons" && currentObject != "taus" && currentObject != "tracks" && currentObject != "photons" && currentObject != "superclusters") continue;
->
->
+    histogram tempIdHisto;
->
+    histogram tempMomIdHisto;
->
+    histogram tempGmaIdHisto;
->
+    histogram tempIdVsMomIdHisto;
->
+    histogram tempIdVsGmaIdHisto;
->
->
+    tempIdHisto.inputCollection = currentObject;
->
+    tempMomIdHisto.inputCollection = currentObject;
->
+    tempGmaIdHisto.inputCollection = currentObject;
->
+    tempIdVsMomIdHisto.inputCollection = currentObject;
->
+    tempIdVsGmaIdHisto.inputCollection = currentObject;
->
->
+    if(currentObject == "secondary muons") currentObject = "secondaryMuons";
->
+    if(currentObject == "secondary electrons") currentObject = "secondaryElectrons";
->
->
+    currentObject = currentObject.substr(0, currentObject.size()-1);
->
+    tempIdHisto.name = currentObject+"GenMatchId";
->
+    tempMomIdHisto.name = currentObject+"GenMatchMotherId";
->
+    tempGmaIdHisto.name = currentObject+"GenMatchGrandmotherId";
->
+    tempIdVsMomIdHisto.name = currentObject+"GenMatchIdVsMotherId";
->
+    tempIdVsGmaIdHisto.name = currentObject+"GenMatchIdVsGrandmotherId";
->
->
+    currentObject.at(0) = toupper(currentObject.at(0));
->
+    tempIdHisto.title = currentObject+" Gen-matched Particle";
->
+    tempMomIdHisto.title = currentObject+" Gen-matched Particle's Mother";
->
+    tempGmaIdHisto.title = currentObject+" Gen-matched Particle's Grandmother";
->
+    tempIdVsMomIdHisto.title = currentObject+" Gen-matched Particle's Mother vs. Particle;Particle;Mother";
->
+    tempIdVsGmaIdHisto.title = currentObject+" Gen-matched Particle's Grandmother vs. Particle;Particle;Grandmother";
->
->
->
+    int maxNum = 25;
->
+    vector<double> binVector;
->
+    binVector.push_back(maxNum);
->
+    binVector.push_back(0);
->
+    binVector.push_back(maxNum);
->
->
+    tempIdHisto.bins = binVector;
->
+    tempIdHisto.inputVariables.push_back("genMatchedId");
->
+    tempMomIdHisto.bins = binVector;
->
+    tempMomIdHisto.inputVariables.push_back("genMatchedMotherId");
->
+    tempGmaIdHisto.bins = binVector;
->
+    tempGmaIdHisto.inputVariables.push_back("genMatchedGrandmotherId");
->
+    binVector.push_back(maxNum);
->
+    binVector.push_back(0);
->
+    binVector.push_back(maxNum);
->
+    tempIdVsMomIdHisto.bins = binVector;
->
+    tempIdVsMomIdHisto.inputVariables.push_back("genMatchedId");
->
+    tempIdVsMomIdHisto.inputVariables.push_back("genMatchedMotherIdReverse");
->
+    tempIdVsGmaIdHisto.bins = binVector;
->
+    tempIdVsGmaIdHisto.inputVariables.push_back("genMatchedId");
->
+    tempIdVsGmaIdHisto.inputVariables.push_back("genMatchedGrandmotherIdReverse");
->
->
+    histograms.push_back(tempIdHisto);
->
+    histograms.push_back(tempMomIdHisto);
->
+    histograms.push_back(tempGmaIdHisto);
->
+    histograms.push_back(tempIdVsMomIdHisto);
->
+    histograms.push_back(tempIdVsGmaIdHisto);
->
+  }
+  channel tempChannel;
+  //loop over all channels (event selections)
+  for(uint currentChannel = 0; currentChannel != channels_.size(); currentChannel++){
-<
->
+    //get name of channel
+    string channelName  (channels_.at(currentChannel).getParameter<string>("name"));
+    tempChannel.name = channelName;
+    //set triggers for this channel
+    vector<string> triggerNames;
+    triggerNames.clear();
-+
+    vector<string> triggerToVetoNames;
-+
+    triggerToVetoNames.clear();
-+
+    tempChannel.triggers.clear();
-+
+    tempChannel.triggersToVeto.clear();
+    if(channels_.at(currentChannel).exists("triggers")){
+      triggerNames   = channels_.at(currentChannel).getParameter<vector<string> >("triggers");
+      for(uint trigger = 0; trigger!= triggerNames.size(); trigger++)
-<
+        tempChannel.triggers.push_back(triggerNames.at(trigger));
-<
+      allNecessaryObjects.push_back("triggers");
->
+        tempChannel.triggers.push_back(triggerNames.at(trigger));
->
+      objectsToGet.push_back("triggers");
->
+    }
->
+    if(channels_.at(currentChannel).exists("triggersToVeto")){
->
+      triggerToVetoNames = channels_.at(currentChannel).getParameter<vector<string> >("triggersToVeto");
->
+      for(uint trigger = 0; trigger!= triggerToVetoNames.size(); trigger++)
->
+        tempChannel.triggersToVeto.push_back(triggerToVetoNames.at(trigger));
->
+      objectsToGet.push_back("triggers");
-+
+    //create cutFlow for this channel
+    cutFlows_.push_back (new CutFlow (fs_, channelName));
-<
-<
+    //book a directory in the output file with the name of the channel
-<
+    TFileDirectory subDir = fs_->mkdir( channelName );
-<
+    directories.push_back(subDir);
-<
+    std::map<std::string, TH1D*> histoMap;
-<
+    oneDHists_.push_back(histoMap);
-<
-<
-<
+    //muon histograms
-<
+    allNecessaryObjects.push_back("muons");
-<
+    oneDHists_.at(currentChannel)["muonPt"]  = directories.at(currentChannel).make<TH1D> ("muonPt",channelLabel+" channel: Muon Transverse Momentum; p_{T} [GeV]", 100, 0, 500);
-<
+    oneDHists_.at(currentChannel)["muonEta"] = directories.at(currentChannel).make<TH1D> ("muonEta",channelLabel+" channel: Muon Eta; #eta", 100, -5, 5);
-<
+    oneDHists_.at(currentChannel)["muonD0"] = directories.at(currentChannel).make<TH1D> ("muonD0",channelLabel+" channel: Muon d_{0}; d_{0} [cm] ", 1000, -1, 1);
-<
+    oneDHists_.at(currentChannel)["muonAbsD0"] = directories.at(currentChannel).make<TH1D> ("muonAbsD0",channelLabel+" channel: Muon d_{0}; |d_{0}| [cm] ", 1000, 0, 1);
-<
+    oneDHists_.at(currentChannel)["muonD0Sig"] = directories.at(currentChannel).make<TH1D> ("muonD0Sig",channelLabel+" channel: Muon d_{0} Significance; d_{0} / #sigma_{d_{0}} ", 1000, -10.0, 10.0);
-<
+    oneDHists_.at(currentChannel)["muonAbsD0Sig"] = directories.at(currentChannel).make<TH1D> ("muonAbsD0Sig",channelLabel+" channel: Muon d_{0} Significance; |d_{0}| / #sigma_{d_{0}} ", 1000, 0, 10.0);
-<
+    oneDHists_.at(currentChannel)["muonIso"] = directories.at(currentChannel).make<TH1D> ("muonIso",channelLabel+" channel: Muon Combined Relative Isolation; rel. iso. ", 1000, 0, 1);
-<
+    oneDHists_.at(currentChannel)["numMuons"] = directories.at(currentChannel).make<TH1D> ("numMuons",channelLabel+" channel: Number of Selected Muons; # muons", 10, 0, 10);
-<
-<
-<
+    //electron histograms
-<
+    allNecessaryObjects.push_back("electrons");
-<
+    oneDHists_.at(currentChannel)["electronPt"]  = directories.at(currentChannel).make<TH1D> ("electronPt",channelLabel+" channel: Electron Transverse Momentum; p_{T} [GeV]", 100, 0, 500);
-<
+    oneDHists_.at(currentChannel)["electronEta"] = directories.at(currentChannel).make<TH1D> ("electronEta",channelLabel+" channel: Electron Eta; #eta", 50, -5, 5);
-<
+    oneDHists_.at(currentChannel)["electronD0"] = directories.at(currentChannel).make<TH1D> ("electronD0",channelLabel+" channel: Electron d_{0}; d_{0} [cm] ", 1000, -1, 1);
-<
+    oneDHists_.at(currentChannel)["electronAbsD0"] = directories.at(currentChannel).make<TH1D> ("electronAbsD0",channelLabel+" channel: Electron d_{0}; |d_{0}| [cm] ", 1000, 0, 1);
-<
+    oneDHists_.at(currentChannel)["electronD0Sig"] = directories.at(currentChannel).make<TH1D> ("electronD0Sig",channelLabel+" channel: Electron d_{0} Significance; d_{0} / #sigma_{d_{0}} ", 1000, -10.0, 10.0);
-<
+    oneDHists_.at(currentChannel)["electronAbsD0Sig"] = directories.at(currentChannel).make<TH1D> ("electronAbsD0Sig",channelLabel+" channel: Electron d_{0} Significance; |d_{0}| / #sigma_{d_{0}} ", 1000, 0, 10.0);
-<
+    oneDHists_.at(currentChannel)["electronIso"] = directories.at(currentChannel).make<TH1D> ("electronIso",channelLabel+" channel: Electron Combined Relative Isolation; rel. iso. ", 1000, 0, 1);
-<
+    oneDHists_.at(currentChannel)["electronFbrem"] = directories.at(currentChannel).make<TH1D> ("electronFbrem",channelLabel+" channel: Electron Brem. Energy Fraction; fbrem", 1000, 0, 2);
-<
+    oneDHists_.at(currentChannel)["electronMVATrig"] = directories.at(currentChannel).make<TH1D> ("electronMVATrig",channelLabel+" channel: Electron ID MVA Output", 100, -1, 1);
-<
+    oneDHists_.at(currentChannel)["electronMVANonTrig"] = directories.at(currentChannel).make<TH1D> ("electronMVANonTrig",channelLabel+" channel: Electron ID MVA Output", 100, -1, 1);
-<
+    oneDHists_.at(currentChannel)["numElectrons"] = directories.at(currentChannel).make<TH1D> ("numElectrons",channelLabel+" channel: Number of Selected Electrons; # electrons", 10, 0, 10);
-<
-<
-<
->
+    vector<TFileDirectory> directories; //vector of directories in the output file.
->
+    vector<string> subSubDirNames;//subdirectories in each channel.
+    //get list of cuts for this channel
+    vector<edm::ParameterSet> cuts_  (channels_.at(currentChannel).getParameter<vector<edm::ParameterSet> >("cuts"));
-–
+    vector<string> tempInputCollections;
-–
+    //loop over and parse all cuts
+    for(uint currentCut = 0; currentCut != cuts_.size(); currentCut++){
-–
+      cut tempCut;
-<
+     //store input collection for cut
-<
+      string inputCollection = cuts_.at(currentCut).getParameter<string> ("inputCollection");
-<
+      tempCut.inputCollection = inputCollection;
-<
-<
+      tempInputCollections.push_back(inputCollection);
-<
+      allNecessaryObjects.push_back(inputCollection);
->
+      //store input collection for cut
->
+      string tempInputCollection = cuts_.at(currentCut).getParameter<string> ("inputCollection");
->
+      if(tempInputCollection == "muon-electron pairs") tempInputCollection = "electron-muon pairs";
->
+      if(tempInputCollection == "jet-electron pairs") tempInputCollection = "electron-jet pairs";
->
+      if(tempInputCollection == "jet-muon pairs") tempInputCollection = "muon-jet pairs";
->
+      if(tempInputCollection == "event-track pairs")   tempInputCollection = "track-event pairs";
->
+      if(tempInputCollection == "secondary muon-muon pairs")   tempInputCollection = "muon-secondary muon pairs";
->
+      if(tempInputCollection == "secondary electron-electron pairs")   tempInputCollection = "electron-secondary electron pairs";
->
+      if(tempInputCollection == "trigobj-electron pairs")   tempInputCollection = "electron-trigobj pairs";
->
+      if(tempInputCollection == "trigobj-muon pairs")   tempInputCollection = "muon-trigobj pairs";
->
+      tempCut.inputCollection = tempInputCollection;
->
+      if(tempInputCollection.find("pairs")==string::npos){ //just a single object
->
+        if(tempInputCollection.find("secondary")!=string::npos){//secondary object
->
+          int spaceIndex = tempInputCollection.find(" ");
->
+          int secondWordLength = tempInputCollection.size() - spaceIndex;
->
+          objectsToGet.push_back(tempInputCollection.substr(spaceIndex+1,secondWordLength));
->
+        }
->
+        else{
->
+          objectsToGet.push_back(tempInputCollection);
->
+        }
->
+        objectsToCut.push_back(tempInputCollection);
->
+      }
->
+      else{//pair of objects, need to add them both to objectsToGet
->
+        string obj1;
->
+        string obj2;
->
+        getTwoObjs(tempInputCollection, obj1, obj2);
->
+        string obj2ToGet = getObjToGet(obj2);
->
+        objectsToCut.push_back(tempInputCollection);
->
+        objectsToCut.push_back(obj1);
->
+        objectsToCut.push_back(obj2);
->
+        objectsToGet.push_back(tempInputCollection);
->
+        objectsToGet.push_back(obj1);
->
+        objectsToGet.push_back(obj2ToGet);
->
->
+      }
->
->
+      //split cut string into parts and store them
+      string cutString = cuts_.at(currentCut).getParameter<string> ("cutString");
-<
+      std::vector<string> cutStringVector = splitString(cutString);
-<
+      tempCut.variable = cutStringVector.at(0);// variable to cut on
-<
+      tempCut.comparativeOperator = cutStringVector.at(1);// comparison to make
-<
+      tempCut.cutValue = atof(cutStringVector.at(2).c_str());// threshold value to pass cut
->
+      vector<string> cutStringVector = splitString(cutString);
->
+      if(cutStringVector.size()!=3 && cutStringVector.size() % 4 !=3){
->
+        cout << "Error: Didn't find the expected number elements in the following cut string: '" << cutString << "'\n";
->
+        exit(0);
->
+      }
->
+      tempCut.numSubcuts = (cutStringVector.size()+1)/4;
->
+      for(int subcutIndex = 0; subcutIndex != tempCut.numSubcuts; subcutIndex++){//loop over all the pieces of the cut combined using &,|
->
+        int indexOffset = 4 * subcutIndex;
->
+        string currentVariableString = cutStringVector.at(indexOffset);
->
+        if(currentVariableString.find("(")==string::npos){
->
+          tempCut.functions.push_back("");//no function was specified
->
+          tempCut.variables.push_back(currentVariableString);// variable to cut on
->
+        }
->
+        else{
->
+          tempCut.functions.push_back(currentVariableString.substr(0,currentVariableString.find("(")));//function comes before the "("
->
+          string tempVariable = currentVariableString.substr(currentVariableString.find("(")+1);//get rest of string
->
+          tempCut.variables.push_back(tempVariable.substr(0,tempVariable.size()-1));//remove trailing ")"
->
+        }
->
+        tempCut.comparativeOperators.push_back(cutStringVector.at(indexOffset+1));// comparison to make
->
+        tempCut.cutValues.push_back(atof(cutStringVector.at(indexOffset+2).c_str()));// threshold value to pass cut
->
+        tempCut.cutStringValues.push_back(cutStringVector.at(indexOffset+2));// string value to pass cut
->
+        if(subcutIndex != 0) tempCut.logicalOperators.push_back(cutStringVector.at(indexOffset-1)); // logical comparison (and, or)
->
+      }
+      //get number of objects required to pass cut for event to pass
+      string numberRequiredString = cuts_.at(currentCut).getParameter<string> ("numberRequired");
-<
+      std::vector<string> numberRequiredVector = splitString(numberRequiredString);
-<
-<
+      // determine number required if comparison contains "="
-<
+      int numberRequiredInt = atoi(numberRequiredVector.at(1).c_str());
-<
+      if(numberRequiredVector.at(0) == ">") numberRequiredInt++;
-<
+      else if(numberRequiredVector.at(0) == "<") numberRequiredInt--;
->
+      vector<string> numberRequiredVector = splitString(numberRequiredString);
->
+      if(numberRequiredVector.size()!=2){
->
+        cout << "Error: Didn't find two elements in the following number requirement string: '" << numberRequiredString << "'\n";
->
+        exit(0);
->
+      }
-+
+      int numberRequiredInt = atoi(numberRequiredVector.at(1).c_str());
+      tempCut.numberRequired = numberRequiredInt;// number of objects required to pass the cut
+      tempCut.eventComparativeOperator = numberRequiredVector.at(0);// comparison to make
-<
-<
+      if(cuts_.at(currentCut).exists("function")){
-<
+        tempCut.function = cuts_.at(currentCut).getParameter<string> ("function");
-<
+      }
-<
+      else tempCut.function = "";
->
->
+      //Set up vectors to store the directories and subDIrectories for each channel.
->
+      string subSubDirName;
+      string tempCutName;
+      if(cuts_.at(currentCut).exists("alias")){
-<
+        tempCutName = cuts_.at(currentCut).getParameter<string> ("alias");
->
+        tempCutName = cuts_.at(currentCut).getParameter<string> ("alias");
->
+        subSubDirName = "After " + cuts_.at(currentCut).getParameter<string> ("alias") + " Cut Applied";
+      else{
-<
+        //construct string for cutflow table
-<
+        bool plural = numberRequiredInt != 1;
-<
+        string collectionString = plural ? inputCollection : inputCollection.substr(0, inputCollection.size()-1);
-<
+        string cutName =  numberRequiredString + " " + collectionString + " with " + cutString;
-<
+        tempCutName = cutName;
->
+        //construct string for cutflow table
->
+        bool plural = numberRequiredInt != 1;
->
+        string collectionString = plural ? tempInputCollection : tempInputCollection.substr(0, tempInputCollection.size()-1);
->
+        string cutName =  numberRequiredString + " " + collectionString + " with " + cutString;
->
+        tempCutName = cutName;
->
+        subSubDirName = "After " + numberRequiredString + " " + collectionString + " with " + cutString + " Cut Applied";
-–
+      tempCut.name = tempCutName;
-+
+      subSubDirNames.push_back(subSubDirName);
-+
+      tempCut.name = tempCutName;
+      tempChannel.cuts.push_back(tempCut);
+    }//end loop over cuts
-<
+    //make unique vector of all objects that this channel cuts on (so we know to set flags for those)
-<
+    sort( tempInputCollections.begin(), tempInputCollections.end() );
-<
+    tempInputCollections.erase( unique( tempInputCollections.begin(), tempInputCollections.end() ), tempInputCollections.end() );
-<
+    tempChannel.inputCollections = tempInputCollections;
->
+    vector<map<string, TH1D*>> oneDHistsTmp;
->
+    vector<map<string, TH2D*>> twoDHistsTmp;
->
+    //book a directory in the output file with the name of the channel
->
+    TFileDirectory subDir = fs_->mkdir( channelName );
->
+    //loop over the cuts to set up subdirectory for each cut if GetPlotsAfterEachCut_ is true.
->
+    if(GetPlotsAfterEachCut_){
->
+      for( uint currentDir=0; currentDir != subSubDirNames.size(); currentDir++){
->
+        TFileDirectory subSubDir = subDir.mkdir( subSubDirNames[currentDir] );
->
+        directories.push_back(subSubDir);
->
+        map<string, TH1D*> oneDhistoMap;
->
+        oneDHistsTmp.push_back(oneDhistoMap);
->
+        map<string, TH2D*> twoDhistoMap;
->
+        twoDHistsTmp.push_back(twoDhistoMap);
->
+      }
->
+      oneDHists_.push_back(oneDHistsTmp);
->
+      twoDHists_.push_back(twoDHistsTmp);
->
+    }
->
+    //only set up directories with names of the channels if GetPlotsAfterEachCut_ is false.
->
+    else{
->
+      map<string, TH1D*> oneDhistoMap;
->
+      oneDHistsTmp.push_back(oneDhistoMap);
->
+      map<string, TH2D*> twoDhistoMap;
->
+      twoDHistsTmp.push_back(twoDhistoMap);
->
+      oneDHists_.push_back(oneDHistsTmp);
->
+      twoDHists_.push_back(twoDHistsTmp);
->
+      directories.push_back(subDir);
->
->
+    }
->
-+
+    //book all histograms included in the configuration
-+
+    for(uint currentDir = 0; currentDir != directories.size(); currentDir++){//loop over all the directories.
-+
-+
+      TTree* newTree = directories.at(currentDir).make<TTree> (TString("BNTree_"+channelLabel), TString("BNTree_"+channelLabel));
-+
+      BNTrees_.push_back(newTree);
-+
+      for (uint iBranch = 0; iBranch < treeBranches_.size(); iBranch++){
-+
+        BranchSpecs currentVar = treeBranches_.at(iBranch);
-+
+        vector<float> newVec;
-+
+        BNTreeBranchVals_[currentVar.name] = newVec;
-+
+        BNTrees_.back()->Branch(TString(currentVar.name), &BNTreeBranchVals_.at(currentVar.name));
-+
+      } // end for (uint iBranch = 0; iBranch < treeBranches_.size(); iBranch++){
-+
-+
+      for(uint currentHistogramIndex = 0; currentHistogramIndex != histograms.size(); currentHistogramIndex++){
-+
-+
+        histogram currentHistogram = histograms.at(currentHistogramIndex);
-+
+        int numBinsElements = currentHistogram.bins.size();
-+
+        int numInputVariables = currentHistogram.inputVariables.size();
-+
+        int numBinEdgesX = currentHistogram.variableBinsX.size();
-+
+        int numBinEdgesY = currentHistogram.variableBinsY.size();
-+
-+
+        if(numBinsElements == 1){
-+
+          if(numBinEdgesX > 1){
-+
+            if(numBinEdgesY > 1)
-+
+              numBinsElements = 6;
-+
+            else
-+
+              numBinsElements = 3;
-+
+          }
-+
+        }
-+
+        if(numBinsElements != 3 && numBinsElements !=6){
-+
+          cout << "Error: Didn't find correct number of bin specifications for histogram named '" << currentHistogram.name << "'\n";
-+
+          exit(0);
-+
+        }
-+
+        else if((numBinsElements == 3 && numInputVariables !=1) || (numBinsElements == 6 && numInputVariables!=2)){
-+
+          cout << "Error: Didn't find correct number of input variables for histogram named '" << currentHistogram.name << "'\n";
-+
+          exit(0);
-+
+        }
-+
+        else if(numBinsElements == 3){
-+
+          if (currentHistogram.bins.size () == 3)
-+
+            oneDHists_.at(currentChannel).at(currentDir)[currentHistogram.name] = directories.at(currentDir).make<TH1D> (TString(currentHistogram.name),channelLabel+" channel: "+currentHistogram.title, currentHistogram.bins.at(0), currentHistogram.bins.at(1), currentHistogram.bins.at(2));
-+
+          else
-+
+            {
-+
+              oneDHists_.at(currentChannel).at(currentDir)[currentHistogram.name] = directories.at(currentDir).make<TH1D> (TString(currentHistogram.name),channelLabel+" channel: "+currentHistogram.title, numBinEdgesX - 1, currentHistogram.variableBinsX.data ());
-+
+            }
-+
+        }
-+
+        else if(numBinsElements == 6){
-+
+          if (currentHistogram.bins.size () == 6)
-+
+            twoDHists_.at(currentChannel).at(currentDir)[currentHistogram.name] = directories.at(currentDir).make<TH2D> (TString(currentHistogram.name),channelLabel+" channel: "+currentHistogram.title, currentHistogram.bins.at(0), currentHistogram.bins.at(1), currentHistogram.bins.at(2),currentHistogram.bins.at(3),currentHistogram.bins.at(4),currentHistogram.bins.at(5));
-+
+          else
-+
+            twoDHists_.at(currentChannel).at(currentDir)[currentHistogram.name] = directories.at(currentDir).make<TH2D> (TString(currentHistogram.name),channelLabel+" channel: "+currentHistogram.title, numBinEdgesX - 1, currentHistogram.variableBinsX.data (), numBinEdgesY - 1, currentHistogram.variableBinsY.data ());
-+
+        }
-+
-+
-+
+        if(currentHistogram.name.find("GenMatch")==string::npos) continue;
-+
-+
+        // bin      particle type
-+
+        // ---      -------------
-+
+        //  0        unmatched
-+
+        //  1        u
-+
+        //  2        d
-+
+        //  3        s
-+
+        //  4        c
-+
+        //  5        b
-+
+        //  6        t
-+
+        //  7        e
-+
+        //  8        mu
-+
+        //  9        tau
-+
+        // 10        nu
-+
+        // 11        g
-+
+        // 12        gamma
-+
+        // 13        Z
-+
+        // 14        W
-+
+        // 15        light meson
-+
+        // 16        K meson
-+
+        // 17        D meson
-+
+        // 18        B meson
-+
+        // 19        light baryon
-+
+        // 20        strange baryon
-+
+        // 21        charm baryon
-+
+        // 22        bottom baryon
-+
+        // 23        QCD string
-+
+        // 24        other
-+
-+
+        vector<TString> labelArray;
-+
+        labelArray.push_back("unmatched");
-+
+        labelArray.push_back("u");
-+
+        labelArray.push_back("d");
-+
+        labelArray.push_back("s");
-+
+        labelArray.push_back("c");
-+
+        labelArray.push_back("b");
-+
+        labelArray.push_back("t");
-+
+        labelArray.push_back("e");
-+
+        labelArray.push_back("#mu");
-+
+        labelArray.push_back("#tau");
-+
+        labelArray.push_back("#nu");
-+
+        labelArray.push_back("g");
-+
+        labelArray.push_back("#gamma");
-+
+        labelArray.push_back("Z");
-+
+        labelArray.push_back("W");
-+
+        labelArray.push_back("light meson");
-+
+        labelArray.push_back("K meson");
-+
+        labelArray.push_back("D meson");
-+
+        labelArray.push_back("B meson");
-+
+        labelArray.push_back("light baryon");
-+
+        labelArray.push_back("strange baryon");
-+
+        labelArray.push_back("charm baryon");
-+
+        labelArray.push_back("bottom baryon");
-+
+        labelArray.push_back("QCD string");
-+
+        labelArray.push_back("other");
-+
-+
+        for(int bin = 0; bin !=currentHistogram.bins.at(0); bin++){
-+
+          if(currentHistogram.name.find("GenMatchIdVsMotherId")==string::npos && currentHistogram.name.find("GenMatchIdVsGrandmotherId")==string::npos) {
-+
+            oneDHists_.at(currentChannel).at(currentDir)[currentHistogram.name]->GetXaxis()->SetBinLabel(bin+1,labelArray.at(bin));
-+
+          }
-+
+          else {
-+
+            twoDHists_.at(currentChannel).at(currentDir)[currentHistogram.name]->GetYaxis()->SetBinLabel(bin+1,labelArray.at(currentHistogram.bins.at(0)-bin-1));
-+
+            twoDHists_.at(currentChannel).at(currentDir)[currentHistogram.name]->GetXaxis()->SetBinLabel(bin+1,labelArray.at(bin));
-+
+          }
-+
+        }
-+
+        if(currentHistogram.name.find("GenMatchIdVsMotherId")!=string::npos || currentHistogram.name.find("GenMatchIdVsGrandmotherId")!=string::npos) {
-+
+          twoDHists_.at(currentChannel).at(currentDir)[currentHistogram.name]->GetXaxis()->CenterTitle();
-+
+          twoDHists_.at(currentChannel).at(currentDir)[currentHistogram.name]->GetYaxis()->CenterTitle();
-+
+        }
-+
-+
+      }  // end      for(uint currentHistogramIndex = 0; currentHistogramIndex != histograms.size(); currentHistogramIndex++){
-+
-+
-+
+      // Book a histogram for the number of each object type to be plotted.
-+
+      // Name of objectToPlot here must match the name specified in OSUAnalysis::analyze().
-+
+      for (uint currentObjectIndex = 0; currentObjectIndex != objectsToPlot.size(); currentObjectIndex++){
-+
+        string currentObject = objectsToPlot.at(currentObjectIndex);
-+
+        int maxNum = 10;
-+
+        if(currentObject == "mcparticles") maxNum = 50;
-+
+        else if(currentObject == "primaryvertexs") maxNum = 50;
-+
-+
+        if(currentObject == "muon-muon pairs")                currentObject = "dimuonPairs";
-+
+        else if(currentObject == "electron-electron pairs")   currentObject = "dielectronPairs";
-+
+        else if(currentObject == "electron-muon pairs")       currentObject = "electronMuonPairs";
-+
+        else if(currentObject == "secondary jets")            currentObject = "secondaryJets";
-+
+        else if(currentObject == "jet-jet pairs")             currentObject = "dijetPairs";
-+
+        else if(currentObject == "electron-jet pairs")        currentObject = "electronJetPairs";
-+
+        else if(currentObject == "muon-jet pairs")            currentObject = "muonJetPairs";
-+
+        else if(currentObject == "track-event pairs")         currentObject = "trackEventPairs";
-+
+        else if(currentObject == "electron-track pairs")      currentObject = "electronTrackPairs";
-+
+        else if(currentObject == "muon-track pairs")          currentObject = "muonTrackPairs";
-+
+        else if(currentObject == "muon-tau pairs")            currentObject = "muonTauPairs";
-+
+        else if(currentObject == "tau-tau pairs")             currentObject = "ditauPairs";
-+
+        else if(currentObject == "tau-track pairs")           currentObject = "tauTrackPairs";
-+
+        else if(currentObject == "muon-secondary muon pairs") currentObject = "muonSecondaryMuonPairs";
-+
+        else if(currentObject == "secondary muons")           currentObject = "secondaryMuons";
-+
+        else if(currentObject == "electron-secondary electron pairs") currentObject = "electronSecondaryElectronPairs";
-+
+        else if(currentObject == "secondary electrons")       currentObject = "secondaryElectrons";
-+
+        else if(currentObject == "electron-trigobj pairs")    currentObject = "electronTrigobjPairs";
-+
+        else if(currentObject == "muon-trigobj pairs")        currentObject = "muonTrigobjPairs";
-+
-+
+        currentObject.at(0) = toupper(currentObject.at(0));
-+
+        string histoName = "num" + currentObject;
-+
-+
+        if(histoName == "numPrimaryvertexs"){
-+
+          string newHistoName = histoName + "BeforePileupCorrection";
-+
+          oneDHists_.at(currentChannel).at(currentDir)[newHistoName] = directories.at(currentDir).make<TH1D> (TString(newHistoName),channelLabel+" channel: Number of Selected "+currentObject+" Before Pileup Correction; # "+currentObject, maxNum, 0, maxNum);
-+
+          newHistoName = histoName + "AfterPileupCorrection";
-+
+          oneDHists_.at(currentChannel).at(currentDir)[newHistoName] = directories.at(currentDir).make<TH1D> (TString(newHistoName),channelLabel+" channel: Number of Selected "+currentObject+ " After Pileup Correction; # "+currentObject, maxNum, 0, maxNum);
-+
+        }
-+
+        else
-+
+          oneDHists_.at(currentChannel).at(currentDir)[histoName] = directories.at(currentDir).make<TH1D> (TString(histoName),channelLabel+" channel: Number of Selected "+currentObject+"; # "+currentObject, maxNum, 0, maxNum);
-+
+      }
-+
+    }//end of loop over directories
+    channels.push_back(tempChannel);
+    tempChannel.cuts.clear();
-–
+  }//end loop over channels
-–
+  //make unique vector of objects we need to cut on (so we make sure to get them from the event)
-–
+  sort( allNecessaryObjects.begin(), allNecessaryObjects.end() );
-–
+  allNecessaryObjects.erase( unique( allNecessaryObjects.begin(), allNecessaryObjects.end() ), allNecessaryObjects.end() );
-+
+  //make unique vector of objects we need to get from the event
-+
+  sort( objectsToGet.begin(), objectsToGet.end() );
-+
+  objectsToGet.erase( unique( objectsToGet.begin(), objectsToGet.end() ), objectsToGet.end() );
-+
+  //make unique vector of objects we need to cut on
-+
+  sort( objectsToCut.begin(), objectsToCut.end() );
-+
+  objectsToCut.erase( unique( objectsToCut.begin(), objectsToCut.end() ), objectsToCut.end() );
-+
-+
-+
+} // end constructor OSUAnalysis::OSUAnalysis()
-–
+}
+OSUAnalysis::~OSUAnalysis ()
-+
+  // Destroying the CutFlow objects causes the cut flow numbers and time
+  // information to be printed to standard output.
+  for(uint currentChannel = 0; currentChannel != channels_.size(); currentChannel++){
+OSUAnalysis::analyze (const edm::Event &event, const edm::EventSetup &setup)
-–
+  // Retrieve necessary collections from the event.
-<
+  edm::Handle<BNtriggerCollection> triggers;
-<
+  if (std::find(allNecessaryObjects.begin(), allNecessaryObjects.end(), "triggers") != allNecessaryObjects.end())
->
->
+  if (find(objectsToGet.begin(), objectsToGet.end(), "triggers") != objectsToGet.end())
+    event.getByLabel (triggers_, triggers);
-<
+  edm::Handle<BNjetCollection> jets;
-<
+  if (std::find(allNecessaryObjects.begin(), allNecessaryObjects.end(), "jets") != allNecessaryObjects.end())
->
+  if (find(objectsToGet.begin(), objectsToGet.end(), "trigobjs") != objectsToGet.end())
->
+    event.getByLabel (trigobjs_, trigobjs);
->
->
+  if (find(objectsToGet.begin(), objectsToGet.end(), "jets") != objectsToGet.end())
+    event.getByLabel (jets_, jets);
-<
+  edm::Handle<BNmuonCollection> muons;
-<
+  if (std::find(allNecessaryObjects.begin(), allNecessaryObjects.end(), "muons") != allNecessaryObjects.end())
->
+  if (find(objectsToGet.begin(), objectsToGet.end(), "muons") != objectsToGet.end())
+    event.getByLabel (muons_, muons);
-<
+  edm::Handle<BNelectronCollection> electrons;
-<
+  if (std::find(allNecessaryObjects.begin(), allNecessaryObjects.end(), "electrons") != allNecessaryObjects.end())
->
+  if (find(objectsToGet.begin(), objectsToGet.end(), "electrons") != objectsToGet.end())
+    event.getByLabel (electrons_, electrons);
-<
+  edm::Handle<BNeventCollection> events;
-<
+  if (std::find(allNecessaryObjects.begin(), allNecessaryObjects.end(), "events") != allNecessaryObjects.end())
->
+  if (find(objectsToGet.begin(), objectsToGet.end(), "events") != objectsToGet.end())
+    event.getByLabel (events_, events);
-<
+  edm::Handle<BNtauCollection> taus;
-<
+  if (std::find(allNecessaryObjects.begin(), allNecessaryObjects.end(), "taus") != allNecessaryObjects.end())
->
+  if (find(objectsToGet.begin(), objectsToGet.end(), "taus") != objectsToGet.end())
+    event.getByLabel (taus_, taus);
-<
+  edm::Handle<BNmetCollection> mets;
-<
+  if (std::find(allNecessaryObjects.begin(), allNecessaryObjects.end(), "mets") != allNecessaryObjects.end())
->
+  if (find(objectsToGet.begin(), objectsToGet.end(), "mets") != objectsToGet.end())
+    event.getByLabel (mets_, mets);
-<
+  edm::Handle<BNtrackCollection> tracks;
-<
+  if (std::find(allNecessaryObjects.begin(), allNecessaryObjects.end(), "tracks") != allNecessaryObjects.end())
->
+  if (find(objectsToGet.begin(), objectsToGet.end(), "tracks") != objectsToGet.end())
+    event.getByLabel (tracks_, tracks);
-<
+  edm::Handle<BNgenjetCollection> genjets;
-<
+  if (std::find(allNecessaryObjects.begin(), allNecessaryObjects.end(), "genjets") != allNecessaryObjects.end())
->
+  if (find(objectsToGet.begin(), objectsToGet.end(), "genjets") != objectsToGet.end())
+    event.getByLabel (genjets_, genjets);
-<
+  edm::Handle<BNmcparticleCollection> mcparticles;
-<
+  if (std::find(allNecessaryObjects.begin(), allNecessaryObjects.end(), "mcparticles") != allNecessaryObjects.end())
->
+  if (find(objectsToGet.begin(), objectsToGet.end(), "mcparticles") != objectsToGet.end())
+    event.getByLabel (mcparticles_, mcparticles);
-<
+  edm::Handle<BNprimaryvertexCollection> primaryvertexs;
-<
+  if (std::find(allNecessaryObjects.begin(), allNecessaryObjects.end(), "primaryvertexs") != allNecessaryObjects.end())
->
+  if (find(objectsToGet.begin(), objectsToGet.end(), "primaryvertexs") != objectsToGet.end())
+    event.getByLabel (primaryvertexs_, primaryvertexs);
-<
+  edm::Handle<BNbxlumiCollection> bxlumis;
-<
+  if (std::find(allNecessaryObjects.begin(), allNecessaryObjects.end(), "bxlumis") != allNecessaryObjects.end())
->
+  if (find(objectsToGet.begin(), objectsToGet.end(), "bxlumis") != objectsToGet.end())
+    event.getByLabel (bxlumis_, bxlumis);
-<
+  edm::Handle<BNphotonCollection> photons;
-<
+  if (std::find(allNecessaryObjects.begin(), allNecessaryObjects.end(), "photons") != allNecessaryObjects.end())
->
+  if (find(objectsToGet.begin(), objectsToGet.end(), "photons") != objectsToGet.end())
+    event.getByLabel (photons_, photons);
-<
+  edm::Handle<BNsuperclusterCollection> superclusters;
-<
+  if (std::find(allNecessaryObjects.begin(), allNecessaryObjects.end(), "superclusters") != allNecessaryObjects.end())
->
+  if (find(objectsToGet.begin(), objectsToGet.end(), "superclusters") != objectsToGet.end())
+    event.getByLabel (superclusters_, superclusters);
-+
+  if (datasetType_ == "signalMC"){
-+
+    if (find(objectsToGet.begin(), objectsToGet.end(), "stops") != objectsToGet.end())
-+
+      event.getByLabel (stops_, stops);
-+
+  }
-+
-+
+  if (useTrackCaloRhoCorr_) {
-+
+    // Used only for pile-up correction of by-hand calculation of isolation energy.
-+
+    // This rho collection is not available in all BEANs.
-+
+    // For description of rho values for different jet reconstruction algorithms, see
-+
+    // https://twiki.cern.ch/twiki/bin/view/CMS/JetAlgorithms#Algorithms
-+
+    event.getByLabel ("kt6CaloJets","rho", rhokt6CaloJetsHandle_);
-+
+  }
-+
-+
+  double masterScaleFactor = 1.0;
-+
-+
+  //get pile-up event weight
-+
+  if (doPileupReweighting_ && datasetType_ != "data") {
-+
+    //for "data" datasets, the numTruePV is always set to -1
-+
+    if (events->at(0).numTruePV < 0) cout << "WARNING[OSUAnalysis::analyze]: Event has numTruePV<0.  Turning off pile-up reweighting." << endl;
-+
+    else masterScaleFactor *= puWeight_->at (events->at (0).numTruePV);
-+
+  }
-+
-+
+  stopCTauScaleFactor_ = 1.0;
-+
+  if (datasetType_ == "signalMC" && regex_match (dataset_, regex ("stop.*to.*_.*mm.*")))
-+
+    stopCTauScaleFactor_ = stopCTauWeight_->at (event);
-+
+  masterScaleFactor *= stopCTauScaleFactor_;
+  //loop over all channels
+  for(uint currentChannelIndex = 0; currentChannelIndex != channels.size(); currentChannelIndex++){
+    channel currentChannel = channels.at(currentChannelIndex);
-<
-<
+    flagMap individualFlags;
-<
+    flagMap cumulativeFlags;
-<
+    counterMap passingCounter;
->
->
+    flagMap individualFlags;
->
+    counterMap passingCounter;
->
+    cumulativeFlags.clear ();
->
->
+    for (map<string, vector<float>>::iterator iter = BNTreeBranchVals_.begin();
->
+         iter != BNTreeBranchVals_.end(); iter++) {
->
+      iter->second.clear();  // clear array
->
+    }
+    bool triggerDecision = true;
-<
+    if(currentChannel.triggers.size() != 0){  //triggers specified
-<
+      triggerDecision = evaluateTriggers(currentChannel.triggers,triggers.product());
->
+    if(currentChannel.triggers.size() != 0 || currentChannel.triggersToVeto.size() != 0){  //triggers specified
->
+      triggerDecision = evaluateTriggers(currentChannel.triggers, currentChannel.triggersToVeto, triggers.product());
+      cutFlows_.at(currentChannelIndex)->at ("trigger") = triggerDecision;
+    //loop over all cuts
+    for(uint currentCutIndex = 0; currentCutIndex != currentChannel.cuts.size(); currentCutIndex++){
+      cut currentCut = currentChannel.cuts.at(currentCutIndex);
-+
+      for(uint currentObjectIndex = 0; currentObjectIndex != objectsToCut.size(); currentObjectIndex++){
-+
+        string currentObject = objectsToCut.at(currentObjectIndex);
-<
+      for(uint currentObjectIndex = 0; currentObjectIndex != allNecessaryObjects.size(); currentObjectIndex++){
-<
-<
+        string currentObject = allNecessaryObjects.at(currentObjectIndex);
-<
+        individualFlags[currentObject].push_back (vector<bool> ());
-<
+        cumulativeFlags[currentObject].push_back (vector<bool> ());
-<
-<
+        if(currentObject == "jets") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,jets.product(),"jets");
-<
+        else if(currentObject == "muons") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,muons.product(),"muons");
-<
+        else if(currentObject == "electrons") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,electrons.product(),"electrons");
-<
+        else if(currentObject == "events") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,events.product(),"events");
-<
+        else if(currentObject == "taus") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,taus.product(),"taus");
-<
+        else if(currentObject == "mets") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,mets.product(),"mets");
-<
+        else if(currentObject == "tracks") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,tracks.product(),"tracks");
-<
+        else if(currentObject == "genjets") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,genjets.product(),"genjets");
-<
+        else if(currentObject == "mcparticles") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,mcparticles.product(),"mcparticles");
-<
+        else if(currentObject == "primaryvertexs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,primaryvertexs.product(),"primaryvertexs");
-<
+        else if(currentObject == "bxlumis") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,bxlumis.product(),"bxlumis");
-<
+        else if(currentObject == "photons") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,photons.product(),"photons");
-<
+        else if(currentObject == "superclusters") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,superclusters.product(),"superclusters");
-<
->
+        //initialize maps to get ready to set cuts
->
+        individualFlags[currentObject].push_back (vector<bool> ());
->
+        cumulativeFlags[currentObject].push_back (vector<bool> ());
-+
+      for(uint currentObjectIndex = 0; currentObjectIndex != objectsToCut.size(); currentObjectIndex++){
-+
+        string currentObject = objectsToCut.at(currentObjectIndex);
-+
+        int flagsForPairCutsIndex = max(int(currentCutIndex-1),0);
-<
+    }//end loop over all cuts
-<
->
+        if     (currentObject == "jets")            setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,jets.product(),"jets");
->
+        else if(currentObject == "secondary jets")  setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,jets.product(),"secondary jets");
->
+        else if(currentObject == "muons")           setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,muons.product(),"muons");
->
+        else if(currentObject == "secondary muons") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,muons.product(),"secondary muons");
->
+        else if(currentObject == "secondary electrons") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,electrons.product(),"secondary electrons");
->
+        else if(currentObject == "electrons") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,electrons.product(),"electrons");
->
+        else if(currentObject == "events") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,events.product(),"events");
->
+        else if(currentObject == "taus") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,taus.product(),"taus");
->
+        else if(currentObject == "mets") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,mets.product(),"mets");
->
+        else if(currentObject == "tracks") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,tracks.product(),"tracks");
->
+        else if(currentObject == "genjets") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,genjets.product(),"genjets");
->
+        else if(currentObject == "mcparticles") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,mcparticles.product(),"mcparticles");
->
+        else if(currentObject == "primaryvertexs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,primaryvertexs.product(),"primaryvertexs");
->
+        else if(currentObject == "bxlumis") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,bxlumis.product(),"bxlumis");
->
+        else if(currentObject == "photons") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,photons.product(),"photons");
->
+        else if(currentObject == "superclusters") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,superclusters.product(),"superclusters");
->
+        else if(currentObject == "trigobjs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,trigobjs.product(),"trigobjs");
->
->
->
->
+        else if(currentObject == "muon-muon pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,muons.product(),muons.product(), \
->
+                                                                   cumulativeFlags.at("muons").at(flagsForPairCutsIndex), \
->
+                                                                   cumulativeFlags.at("muons").at(flagsForPairCutsIndex), \
->
+                                                                   "muon-muon pairs");
->
->
+        else if(currentObject == "muon-secondary muon pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,muons.product(),muons.product(), \
->
+                                                                             cumulativeFlags.at("muons").at(flagsForPairCutsIndex), \
->
+                                                                             cumulativeFlags.at("secondary muons").at(flagsForPairCutsIndex), \
->
+                                                                             "muon-secondary muon pairs");
->
->
+        else if(currentObject == "electron-secondary electron pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,electrons.product(),electrons.product(), \
->
+                                                                                     cumulativeFlags.at("electrons").at(flagsForPairCutsIndex), \
->
+                                                                                     cumulativeFlags.at("secondary electrons").at(flagsForPairCutsIndex), \
->
+                                                                                     "electron-secondary electron pairs");
->
->
+        else if(currentObject == "electron-electron pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,electrons.product(),electrons.product(), \
->
+                                                                           cumulativeFlags.at("electrons").at(flagsForPairCutsIndex), \
->
+                                                                           cumulativeFlags.at("electrons").at(flagsForPairCutsIndex), \
->
+                                                                           "electron-electron pairs");
->
+        else if(currentObject == "electron-muon pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,electrons.product(),muons.product(), \
->
+                                                                       cumulativeFlags.at("electrons").at(flagsForPairCutsIndex), \
->
+                                                                       cumulativeFlags.at("muons").at(flagsForPairCutsIndex), \
->
+                                                                       "electron-muon pairs");
->
+        else if(currentObject == "jet-jet pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,jets.product(),jets.product(), \
->
+                                                                 cumulativeFlags.at("jets").at(flagsForPairCutsIndex), \
->
+                                                                 cumulativeFlags.at("jets").at(flagsForPairCutsIndex), \
->
+                                                                 "jet-jet pairs");
->
+        else if(currentObject == "electron-jet pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,electrons.product(),jets.product(), \
->
+                                                                      cumulativeFlags.at("electrons").at(flagsForPairCutsIndex), \
->
+                                                                      cumulativeFlags.at("jets").at(flagsForPairCutsIndex), \
->
+                                                                      "electron-jet pairs");
->
+        else if(currentObject == "muon-jet pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,muons.product(),jets.product(), \
->
+                                                                  cumulativeFlags.at("muons").at(flagsForPairCutsIndex), \
->
+                                                                  cumulativeFlags.at("jets").at(flagsForPairCutsIndex), \
->
+                                                                  "muon-jet pairs");
->
+        else if(currentObject == "track-event pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,tracks.product(),events.product(),
->
+                                                                     cumulativeFlags.at("tracks").at(flagsForPairCutsIndex),
->
+                                                                     cumulativeFlags.at("events").at(flagsForPairCutsIndex),
->
+                                                                     "track-event pairs");
->
+        else if(currentObject == "electron-track pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,electrons.product(),tracks.product(),
->
+                                                                        cumulativeFlags.at("electrons").at(flagsForPairCutsIndex),
->
+                                                                        cumulativeFlags.at("tracks").at(flagsForPairCutsIndex),
->
+                                                                        "electron-track pairs");
->
+        else if(currentObject == "muon-track pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,muons.product(),tracks.product(),
->
+                                                                    cumulativeFlags.at("muons").at(flagsForPairCutsIndex),
->
+                                                                    cumulativeFlags.at("tracks").at(flagsForPairCutsIndex),
->
+                                                                    "muon-track pairs");
->
+        else if(currentObject == "muon-tau pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,muons.product(),taus.product(),
->
+                                                                  cumulativeFlags.at("muons").at(flagsForPairCutsIndex),
->
+                                                                  cumulativeFlags.at("taus").at(flagsForPairCutsIndex),
->
+                                                                  "muon-tau pairs");
->
+        else if(currentObject == "tau-tau pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,taus.product(),taus.product(),
->
+                                                                 cumulativeFlags.at("taus").at(flagsForPairCutsIndex),
->
+                                                                 cumulativeFlags.at("taus").at(flagsForPairCutsIndex),
->
+                                                                 "tau-tau pairs");
->
+        else if(currentObject == "tau-track pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,taus .product(),tracks.product(),
->
+                                                                   cumulativeFlags.at("taus").at(flagsForPairCutsIndex),
->
+                                                                   cumulativeFlags.at("tracks").at(flagsForPairCutsIndex),
->
+                                                                   "tau-track pairs");
->
+        else if(currentObject == "electron-trigobj pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,electrons.product(),trigobjs.product(),
->
+                                                                          cumulativeFlags.at("electrons").at(flagsForPairCutsIndex),
->
+                                                                          cumulativeFlags.at("trigobjs").at(flagsForPairCutsIndex),
->
+                                                                          "electron-trigobj pairs");
->
+        else if(currentObject == "muon-trigobj pairs") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,muons.product(),trigobjs.product(),
->
+                                                                      cumulativeFlags.at("muons").at(flagsForPairCutsIndex),
->
+                                                                      cumulativeFlags.at("trigobjs").at(flagsForPairCutsIndex),
->
+                                                                      "muon-trigobj pairs");
->
->
+        if(currentObject == "stops" && datasetType_ == "signalMC") setObjectFlags(currentCut,currentCutIndex,individualFlags,cumulativeFlags,stops.product(),"stops");
->
+      }
-+
+    }//end loop over all cuts
+    //use cumulative flags to apply cuts at event level
+    bool eventPassedAllCuts = true;
-<
->
+    //a vector to store cumulative cut descisions after each cut.
->
+    vector<bool> eventPassedPreviousCuts;
+    //apply trigger (true if none were specified)
+    eventPassedAllCuts = eventPassedAllCuts && triggerDecision;
-–
+    for(uint currentCutIndex = 0; currentCutIndex != currentChannel.cuts.size(); currentCutIndex++){
+      //loop over all objects and count how many passed the cumulative selection up to this point
+      cut currentCut = currentChannel.cuts.at(currentCutIndex);
+      int numberPassing = 0;
-<
+      for (uint object = 0; object != cumulativeFlags[currentCut.inputCollection].at(currentCutIndex).size() ; object++)
-<
+          if(cumulativeFlags[currentCut.inputCollection].at(currentCutIndex).at(object)) numberPassing++;
-<
-<
->
+      for (uint object = 0; object != cumulativeFlags.at(currentCut.inputCollection).at(currentCutIndex).size() ; object++){
->
+        if(cumulativeFlags.at(currentCut.inputCollection).at(currentCutIndex).at(object)) numberPassing++;
->
+      }
+      bool cutDecision = evaluateComparison(numberPassing,currentCut.eventComparativeOperator,currentCut.numberRequired);
+      cutFlows_.at(currentChannelIndex)->at (currentCut.name) = cutDecision;
-–
+      eventPassedAllCuts = eventPassedAllCuts && cutDecision;
-<
->
+      eventPassedPreviousCuts.push_back(eventPassedAllCuts);
-+
+    double scaleFactor = masterScaleFactor;
-<
+    cutFlows_.at(currentChannelIndex)->fillCutFlow();
-<
-<
-<
-<
+    if(!eventPassedAllCuts)continue;
-<
-<
-<
-<
+    vector<bool> electronFlags = cumulativeFlags["electrons"].back();
-<
+    int electronCounter = 0;
-<
-<
+    for (uint electronIndex = 0; electronIndex != electronFlags.size(); electronIndex++){
-<
+      if(!electronFlags.at(electronIndex)) continue;
->
+    muonScaleFactor_ = electronScaleFactor_ = bTagScaleFactor_ = 1.0;
->
+    if(applyLeptonSF_ && datasetType_ != "data"){
->
+      if(cumulativeFlags.find ("muons") != cumulativeFlags.end ()){
->
+        vector<bool> muonFlags;
->
+        for (int i = cumulativeFlags.at("muons").size() - 1; i >= 0; i--){
->
+          if (cumulativeFlags.at("muons").at(i).size()){
->
+            muonFlags = cumulativeFlags.at("muons").at(i);
->
+            break;
->
+          }
->
+        }
->
+        for (uint muonIndex = 0; muonIndex != muonFlags.size(); muonIndex++){
->
+          if(!muonFlags.at(muonIndex)) continue;
->
+          muonScaleFactor_ *= muonSFWeight_->at (muons->at(muonIndex).eta);
->
+        }
->
+      }
->
+      if(cumulativeFlags.find ("electrons") != cumulativeFlags.end ()){
->
+        vector<bool> electronFlags;
->
+        for (int i = cumulativeFlags.at("electrons").size() - 1; i >= 0; i--){
->
+          if (cumulativeFlags.at("electrons").at(i).size()){
->
+            electronFlags = cumulativeFlags.at("electrons").at(i);
->
+            break;
->
+          }
->
+        }
->
+        for (uint electronIndex = 0; electronIndex != electronFlags.size(); electronIndex++){
->
+          if(!electronFlags.at(electronIndex)) continue;
->
+          electronScaleFactor_ *= electronSFWeight_->at (electrons->at(electronIndex).eta, electrons->at(electronIndex).pt);
->
+        }
->
+      }
->
+    }
->
+    if(applyBtagSF_ && datasetType_ != "data"){
->
+     if(cumulativeFlags.find ("jets") != cumulativeFlags.end ()){
->
+        vector<bool> jetFlags;
->
+        vector<double> jetSFs;
->
+        for (int i = cumulativeFlags.at("jets").size() - 1; i >= 0; i--){
->
+          if (cumulativeFlags.at("jets").at(i).size()){
->
+            jetFlags = cumulativeFlags.at("jets").at(i);
->
+            break;
->
+          }
->
+        }
->
+        for (uint jetIndex = 0; jetIndex != jetFlags.size(); jetIndex++){
->
+          if(!jetFlags.at(jetIndex)) continue;
->
+          double jetSFTmp = bTagSFWeight_->sflookup(jets->at(jetIndex).btagCombinedSecVertex, jets->at(jetIndex).pt);
->
+          jetSFs.push_back(jetSFTmp);
->
+        }
->
+        bTagScaleFactor_ *= bTagSFWeight_->weight( jetSFs, minBtag_, maxBtag_ );
->
+      }
->
+    }
->
+    scaleFactor *= muonScaleFactor_;
->
+    scaleFactor *= electronScaleFactor_;
->
+    scaleFactor *= bTagScaleFactor_;
->
+    cutFlows_.at(currentChannelIndex)->fillCutFlow(scaleFactor);
->
->
+    if (printEventInfo_) {
->
+      // Write information about event to screen, for testing purposes.
->
+      cout << "Event passed all cuts in channel " <<  currentChannel.name
->
+           << ": run="  << events->at(0).run
->
+           << "  lumi=" << events->at(0).lumi
->
+           << "  event=" << events->at(0).evt
->
+           << endl;
->
+    }
-<
+      electronCounter++;
-<
+      oneDHists_.at(currentChannelIndex)["electronPt"]->Fill (electrons->at(electronIndex).pt);
-<
+      oneDHists_.at(currentChannelIndex)["electronEta"]->Fill (electrons->at(electronIndex).eta);
-<
+      oneDHists_.at(currentChannelIndex)["electronD0"]->Fill (electrons->at(electronIndex).correctedD0Vertex);
-<
+      oneDHists_.at(currentChannelIndex)["electronAbsD0"]->Fill (fabs(electrons->at(electronIndex).correctedD0Vertex));
-<
+      oneDHists_.at(currentChannelIndex)["electronD0Sig"]->Fill (electrons->at(electronIndex).correctedD0Vertex / electrons->at(electronIndex).tkD0err);
-<
+      oneDHists_.at(currentChannelIndex)["electronAbsD0Sig"]->Fill (fabs(electrons->at(electronIndex).correctedD0Vertex) / electrons->at(electronIndex).tkD0err);
-<
+      oneDHists_.at(currentChannelIndex)["electronIso"]->Fill (((electrons->at(electronIndex).trackIso + electrons->at(electronIndex).caloIso) / electrons->at(electronIndex).pt));
-<
+      oneDHists_.at(currentChannelIndex)["electronFbrem"]->Fill (electrons->at(electronIndex).fbrem);
-<
+      oneDHists_.at(currentChannelIndex)["electronMVATrig"]->Fill (electrons->at(electronIndex).mvaTrigV0);
-<
+      oneDHists_.at(currentChannelIndex)["electronMVANonTrig"]->Fill (electrons->at(electronIndex).mvaNonTrigV0);
->
+    //filling histograms
->
+    for(uint currentCut = 0; currentCut != oneDHists_.at(currentChannelIndex).size(); currentCut++){//loop over all the directories in each channel.
->
+      uint currentDir;
->
+      if (!GetPlotsAfterEachCut_) { currentDir =  currentChannel.cuts.size() - oneDHists_.at(currentChannelIndex).size(); } //if GetPlotsAfterEachCut_ is false, set currentDir point to the last cut.
->
+      else{
->
+        currentDir = currentCut;
->
+      }
->
+      if(eventPassedPreviousCuts.at(currentDir)){
-<
+    }
-<
+    oneDHists_.at(currentChannelIndex)["numElectrons"]->Fill (electronCounter);
->
+        // Assign BNTree variables
->
+        for (uint iBranch = 0; iBranch != treeBranches_.size(); iBranch++) {
->
+          BranchSpecs brSpecs = treeBranches_.at(iBranch);
->
+          string coll = brSpecs.inputCollection;
->
+          if (cumulativeFlags.count(coll) == 0) cout << "Error: no flags found for collection:  " << coll << ", will cause a seg fault" << endl;
->
->
+          if     (coll == "jets")                assignTreeBranch(brSpecs,jets.product(),          cumulativeFlags.at(coll).at(currentDir));
->
+          else if(coll == "secondary jets")      assignTreeBranch(brSpecs,jets.product(),          cumulativeFlags.at(coll).at(currentDir));
->
+          else if(coll == "muons")               assignTreeBranch(brSpecs,muons.product(),         cumulativeFlags.at(coll).at(currentDir));
->
+          else if(coll == "secondary muons")     assignTreeBranch(brSpecs,muons.product(),         cumulativeFlags.at(coll).at(currentDir));
->
+          else if(coll == "electrons")           assignTreeBranch(brSpecs,electrons.product(),     cumulativeFlags.at(coll).at(currentDir));
->
+          else if(coll == "secondary electrons") assignTreeBranch(brSpecs,electrons.product(),     cumulativeFlags.at(coll).at(currentDir));
->
+          else if(coll == "events")              assignTreeBranch(brSpecs,events.product(),        cumulativeFlags.at(coll).at(currentDir));
->
+          else if(coll == "taus")                assignTreeBranch(brSpecs,taus.product(),          cumulativeFlags.at(coll).at(currentDir));
->
+          else if(coll == "mets")                assignTreeBranch(brSpecs,mets.product(),          cumulativeFlags.at(coll).at(currentDir));
->
+          else if(coll == "tracks")              assignTreeBranch(brSpecs,tracks.product(),        cumulativeFlags.at(coll).at(currentDir));
->
+          else if(coll == "genjets")             assignTreeBranch(brSpecs,genjets.product(),       cumulativeFlags.at(coll).at(currentDir));
->
+          else if(coll == "mcparticles")         assignTreeBranch(brSpecs,mcparticles.product(),   cumulativeFlags.at(coll).at(currentDir));
->
+          else if(coll == "primaryvertexs")      assignTreeBranch(brSpecs,primaryvertexs.product(),cumulativeFlags.at(coll).at(currentDir));
->
+          else if(coll == "bxlumis")             assignTreeBranch(brSpecs,bxlumis.product(),       cumulativeFlags.at(coll).at(currentDir));
->
+          else if(coll == "photons")             assignTreeBranch(brSpecs,photons.product(),       cumulativeFlags.at(coll).at(currentDir));
->
+          else if(coll == "superclusters")       assignTreeBranch(brSpecs,superclusters.product(), cumulativeFlags.at(coll).at(currentDir));
->
+          else if(coll == "trigobjs")            assignTreeBranch(brSpecs,trigobjs.product(),      cumulativeFlags.at(coll).at(currentDir));
->
+          else if(coll == "stops"
->
+                  && datasetType_ == "signalMC") assignTreeBranch(brSpecs,stops.product(),         cumulativeFlags.at(coll).at(currentDir));
->
+        } // end loop over branches
->
->
+        for (uint histogramIndex = 0; histogramIndex != histograms.size(); histogramIndex++){
->
+          histogram currentHistogram = histograms.at(histogramIndex);
->
->
+          if (cumulativeFlags.count(currentHistogram.inputCollection) == 0) cout << "Error: no flags found for collection:  " << currentHistogram.inputCollection << ", will cause a seg fault" << endl;
->
->
+          if(currentHistogram.inputVariables.size() == 1){
->
+            TH1D* histo;
->
+            histo = oneDHists_.at(currentChannelIndex).at(currentCut).at(currentHistogram.name);
->
+            if     (currentHistogram.inputCollection == "jets")            fill1DHistogram(histo,currentHistogram,jets.product(),cumulativeFlags.at("jets").at(currentDir),scaleFactor);
->
+            else if(currentHistogram.inputCollection == "secondary jets")  fill1DHistogram(histo,currentHistogram,jets.product(),cumulativeFlags.at("secondary jets").at(currentDir),scaleFactor);
->
+            else if(currentHistogram.inputCollection == "muons")           fill1DHistogram(histo,currentHistogram,muons.product(),cumulativeFlags.at("muons").at(currentDir),scaleFactor);
->
+            else if(currentHistogram.inputCollection == "secondary muons") fill1DHistogram(histo,currentHistogram,muons.product(),cumulativeFlags.at("secondary muons").at(currentDir),scaleFactor);
->
+            else if(currentHistogram.inputCollection == "secondary electrons") fill1DHistogram(histo,currentHistogram,electrons.product(),cumulativeFlags.at("secondary electrons").at(currentDir),scaleFactor);
->
+            else if(currentHistogram.inputCollection == "muon-muon pairs") fill1DHistogram(histo,currentHistogram,muons.product(),muons.product(), \
->
+                                                                                           cumulativeFlags.at("muons").at(currentDir),cumulativeFlags.at("muons").at(currentDir), \
->
+                                                                                           cumulativeFlags.at("muon-muon pairs").at(currentDir),scaleFactor);
->
+            else if(currentHistogram.inputCollection == "muon-secondary muon pairs") fill1DHistogram(histo,currentHistogram,muons.product(),muons.product(), \
->
+                                                                                                     cumulativeFlags.at("muons").at(currentDir),cumulativeFlags.at("secondary muons").at(currentDir), \
->
+                                                                                                     cumulativeFlags.at("muon-secondary muon pairs").at(currentDir),scaleFactor);
->
+            else if(currentHistogram.inputCollection == "electrons") fill1DHistogram(histo,currentHistogram,electrons.product(),cumulativeFlags.at("electrons").at(currentDir),scaleFactor);
->
+            else if(currentHistogram.inputCollection == "electron-electron pairs") fill1DHistogram(histo,currentHistogram,electrons.product(),electrons.product(),\
->
+                                                                                                   cumulativeFlags.at("electrons").at(currentDir),cumulativeFlags.at("electrons").at(currentDir),\
->
+                                                                                                   cumulativeFlags.at("electron-electron pairs").at(currentDir),scaleFactor);
->
+            else if(currentHistogram.inputCollection == "jet-jet pairs") fill1DHistogram(histo,currentHistogram,jets.product(),jets.product(),\
->
+                                                                                         cumulativeFlags.at("jets").at(currentDir),cumulativeFlags.at("jets").at(currentDir),\
->
+                                                                                         cumulativeFlags.at("jet-jet pairs").at(currentDir),scaleFactor);
->
+            else if(currentHistogram.inputCollection == "electron-secondary electron pairs") fill1DHistogram(histo,currentHistogram,electrons.product(),electrons.product(), \
->
+                                                                                                             cumulativeFlags.at("electrons").at(currentDir),cumulativeFlags.at("secondary electrons").at(currentDir), \
->
+                                                                                                             cumulativeFlags.at("electron-secondary electron pairs").at(currentDir),scaleFactor);
->
+            else if(currentHistogram.inputCollection == "electron-muon pairs") fill1DHistogram(histo,currentHistogram, electrons.product(),muons.product(), \
->
+                                                                                               cumulativeFlags.at("electrons").at(currentDir),cumulativeFlags.at("muons").at(currentDir),
->
+                                                                                               cumulativeFlags.at("electron-muon pairs").at(currentDir),scaleFactor);
->
+            else if(currentHistogram.inputCollection == "electron-jet pairs") fill1DHistogram(histo,currentHistogram, electrons.product(),jets.product(), \
->
+                                                                                              cumulativeFlags.at("electrons").at(currentDir),cumulativeFlags.at("jets").at(currentDir),
->
+                                                                                              cumulativeFlags.at("electron-jet pairs").at(currentDir),scaleFactor);
->
+            else if(currentHistogram.inputCollection == "muon-jet pairs") fill1DHistogram(histo,currentHistogram, muons.product(),jets.product(), \
->
+                                                                                          cumulativeFlags.at("muons").at(currentDir),cumulativeFlags.at("jets").at(currentDir),
->
+                                                                                          cumulativeFlags.at("muon-jet pairs").at(currentDir),scaleFactor);
->
+            else if(currentHistogram.inputCollection == "electron-track pairs") fill1DHistogram(histo,currentHistogram, electrons.product(),tracks.product(),
->
+                                                                                                cumulativeFlags.at("electrons").at(currentDir),cumulativeFlags.at("tracks").at(currentDir),
->
+                                                                                                cumulativeFlags.at("electron-track pairs").at(currentDir),scaleFactor);
->
+            else if(currentHistogram.inputCollection == "muon-track pairs") fill1DHistogram(histo,currentHistogram, muons.product(),tracks.product(),
->
+                                                                                            cumulativeFlags.at("muons").at(currentDir),cumulativeFlags.at("tracks").at(currentDir),
->
+                                                                                            cumulativeFlags.at("muon-track pairs").at(currentDir),scaleFactor);
->
+            else if(currentHistogram.inputCollection == "muon-tau pairs") fill1DHistogram(histo,currentHistogram, muons.product(),taus.product(),
->
+                                                                                          cumulativeFlags.at("muons").at(currentDir),cumulativeFlags.at("taus").at(currentDir),
->
+                                                                                          cumulativeFlags.at("muon-tau pairs").at(currentDir),scaleFactor);
->
+            else if(currentHistogram.inputCollection == "tau-tau pairs") fill1DHistogram(histo,currentHistogram, taus.product(),taus.product(),
->
+                                                                                         cumulativeFlags.at("taus").at(currentDir),cumulativeFlags.at("taus").at(currentDir),
->
+                                                                                         cumulativeFlags.at("tau-tau pairs").at(currentDir),scaleFactor);
->
+            else if(currentHistogram.inputCollection == "tau-track pairs") fill1DHistogram(histo,currentHistogram, taus.product(),tracks.product(),
->
+                                                                                           cumulativeFlags.at("taus").at(currentDir),cumulativeFlags.at("tracks").at(currentDir),
->
+                                                                                           cumulativeFlags.at("tau-track pairs").at(currentDir),scaleFactor);
->
+            else if(currentHistogram.inputCollection == "electron-trigobj pairs") fill1DHistogram(histo,currentHistogram, electrons.product(),trigobjs.product(),
->
+                                                                                                  cumulativeFlags.at("electrons").at(currentDir),cumulativeFlags.at("trigobjs").at(currentDir),
->
+                                                                                                  cumulativeFlags.at("electron-trigobj pairs").at(currentDir),scaleFactor);
->
+            else if(currentHistogram.inputCollection == "muon-trigobj pairs") fill1DHistogram(histo,currentHistogram, muons.product(),trigobjs.product(),
->
+                                                                                              cumulativeFlags.at("muons").at(currentDir),cumulativeFlags.at("trigobjs").at(currentDir),
->
+                                                                                              cumulativeFlags.at("muon-trigobj pairs").at(currentDir),scaleFactor);
->
->
+            else if(currentHistogram.inputCollection == "events") fill1DHistogram(histo,currentHistogram,events.product(),cumulativeFlags.at("events").at(currentDir),scaleFactor);
->
+            else if(currentHistogram.inputCollection == "taus") fill1DHistogram(histo,currentHistogram,taus.product(),cumulativeFlags.at("taus").at(currentDir),scaleFactor);
->
+            else if(currentHistogram.inputCollection == "mets") fill1DHistogram(histo,currentHistogram,mets.product(),cumulativeFlags.at("mets").at(currentDir),scaleFactor);
->
+            else if(currentHistogram.inputCollection == "tracks") fill1DHistogram(histo,currentHistogram,tracks.product(),cumulativeFlags.at("tracks").at(currentDir),scaleFactor);
->
+            else if(currentHistogram.inputCollection == "genjets") fill1DHistogram(histo,currentHistogram,genjets.product(),cumulativeFlags.at("genjets").at(currentDir),scaleFactor);
->
+            else if(currentHistogram.inputCollection == "mcparticles") fill1DHistogram(histo,currentHistogram,mcparticles.product(),cumulativeFlags.at("mcparticles").at(currentDir),scaleFactor);
->
+            else if(currentHistogram.inputCollection == "primaryvertexs") fill1DHistogram(histo,currentHistogram,primaryvertexs.product(),cumulativeFlags.at("primaryvertexs").at(currentDir),scaleFactor);
->
+            else if(currentHistogram.inputCollection == "bxlumis") fill1DHistogram(histo,currentHistogram,bxlumis.product(),cumulativeFlags.at("bxlumis").at(currentDir),scaleFactor);
->
+            else if(currentHistogram.inputCollection == "photons") fill1DHistogram(histo,currentHistogram,photons.product(),cumulativeFlags.at("photons").at(currentDir),scaleFactor);
->
+            else if(currentHistogram.inputCollection == "superclusters") fill1DHistogram(histo,currentHistogram,superclusters.product(),cumulativeFlags.at("superclusters").at(currentDir),scaleFactor);
->
+            else if(currentHistogram.inputCollection == "trigobjs") fill1DHistogram(histo,currentHistogram,trigobjs.product(),cumulativeFlags.at("trigobjs").at(currentDir),scaleFactor);
->
+            else if(currentHistogram.inputCollection == "stops" && datasetType_ == "signalMC") fill1DHistogram(histo,currentHistogram,stops.product(),cumulativeFlags.at("stops").at(currentDir),scaleFactor);
->
+          }
->
+          else if(currentHistogram.inputVariables.size() == 2){
->
+            TH2D* histo;
->
+            histo = twoDHists_.at(currentChannelIndex).at(currentCut).at(currentHistogram.name);
->
+            if     (currentHistogram.inputCollection == "jets")            fill2DHistogram(histo,currentHistogram,jets.product(),cumulativeFlags.at("jets").at(currentDir),scaleFactor);
->
+            else if(currentHistogram.inputCollection == "secondary jets")  fill2DHistogram(histo,currentHistogram,jets.product(),cumulativeFlags.at("secondary jets").at(currentDir),scaleFactor);
->
+            else if(currentHistogram.inputCollection == "muons")           fill2DHistogram(histo,currentHistogram,muons.product(),cumulativeFlags.at("muons").at(currentDir),scaleFactor);
->
+            else if(currentHistogram.inputCollection == "secondary muons") fill2DHistogram(histo,currentHistogram,muons.product(),cumulativeFlags.at("secondary muons").at(currentDir),scaleFactor);
->
+            else if(currentHistogram.inputCollection == "muon-muon pairs") fill2DHistogram(histo,currentHistogram,muons.product(),muons.product(), \
->
+                                                                                           cumulativeFlags.at("muons").at(currentDir),cumulativeFlags.at("muons").at(currentDir), \
->
+                                                                                           cumulativeFlags.at("muon-muon pairs").at(currentDir),scaleFactor);
->
+            else if(currentHistogram.inputCollection == "muon-secondary muon pairs") fill2DHistogram(histo,currentHistogram,muons.product(),muons.product(), \
->
+                                                                                                     cumulativeFlags.at("muons").at(currentDir),cumulativeFlags.at("secondary muons").at(currentDir), \
->
+                                                                                                     cumulativeFlags.at("muon-secondary muon pairs").at(currentDir),scaleFactor);
->
+            else if(currentHistogram.inputCollection == "electrons") fill2DHistogram(histo,currentHistogram,electrons.product(),cumulativeFlags.at("electrons").at(currentDir),scaleFactor);
->
+            else if(currentHistogram.inputCollection == "secondary electrons") fill2DHistogram(histo,currentHistogram,electrons.product(),cumulativeFlags.at("secondary electrons").at(currentDir),scaleFactor);
->
+            else if(currentHistogram.inputCollection == "electron-electron pairs") fill2DHistogram(histo,currentHistogram,electrons.product(),electrons.product(), \
->
+                                                                                                   cumulativeFlags.at("electrons").at(currentDir),cumulativeFlags.at("electrons").at(currentDir), \
->
+                                                                                                   cumulativeFlags.at("electron-electron pairs").at(currentDir),scaleFactor);
->
+            else if(currentHistogram.inputCollection == "jet-jet pairs") fill2DHistogram(histo,currentHistogram,jets.product(),jets.product(), \
->
+                                                                                         cumulativeFlags.at("jets").at(currentDir),cumulativeFlags.at("jets").at(currentDir), \
->
+                                                                                         cumulativeFlags.at("jet-jet pairs").at(currentDir),scaleFactor);
->
+            else if(currentHistogram.inputCollection == "electron-secondary electron pairs") fill2DHistogram(histo,currentHistogram,electrons.product(),electrons.product(), \
->
+                                                                                                             cumulativeFlags.at("electrons").at(currentDir),cumulativeFlags.at("secondary electrons").at(currentDir), \
->
+                                                                                                             cumulativeFlags.at("electron-secondary electron pairs").at(currentDir),scaleFactor);
->
+            else if(currentHistogram.inputCollection == "electron-muon pairs") fill2DHistogram(histo,currentHistogram,electrons.product(),muons.product(), \
->
+                                                                                               cumulativeFlags.at("electrons").at(currentDir),cumulativeFlags.at("muons").at(currentDir), \
->
+                                                                                               cumulativeFlags.at("electron-muon pairs").at(currentDir),scaleFactor);
->
+            else if(currentHistogram.inputCollection == "electron-jet pairs") fill2DHistogram(histo,currentHistogram,electrons.product(),jets.product(), \
->
+                                                                                              cumulativeFlags.at("electrons").at(currentDir),cumulativeFlags.at("jets").at(currentDir), \
->
+                                                                                              cumulativeFlags.at("electron-jet pairs").at(currentDir),scaleFactor);
->
+            else if(currentHistogram.inputCollection == "muon-jet pairs") fill2DHistogram(histo,currentHistogram,muons.product(),jets.product(), \
->
+                                                                                          cumulativeFlags.at("muons").at(currentDir),cumulativeFlags.at("jets").at(currentDir), \
->
+                                                                                          cumulativeFlags.at("muon-jet pairs").at(currentDir),scaleFactor);
->
+            else if(currentHistogram.inputCollection == "electron-track pairs") fill2DHistogram(histo,currentHistogram,electrons.product(),tracks.product(),
->
+                                                                                                cumulativeFlags.at("electrons").at(currentDir),cumulativeFlags.at("tracks").at(currentDir),
->
+                                                                                                cumulativeFlags.at("electron-track pairs").at(currentDir),scaleFactor);
->
+            else if(currentHistogram.inputCollection == "muon-track pairs") fill2DHistogram(histo,currentHistogram,muons.product(),tracks.product(),
->
+                                                                                            cumulativeFlags.at("muons").at(currentDir),cumulativeFlags.at("tracks").at(currentDir),
->
+                                                                                            cumulativeFlags.at("muon-track pairs").at(currentDir),scaleFactor);
->
+            else if(currentHistogram.inputCollection == "muon-tau pairs") fill2DHistogram(histo,currentHistogram,muons.product(),taus.product(),
->
+                                                                                          cumulativeFlags.at("muons").at(currentDir),cumulativeFlags.at("taus").at(currentDir),
->
+                                                                                          cumulativeFlags.at("muon-tau pairs").at(currentDir),scaleFactor);
->
+            else if(currentHistogram.inputCollection == "tau-tau pairs") fill2DHistogram(histo,currentHistogram,taus.product(),taus.product(),
->
+                                                                                         cumulativeFlags.at("taus").at(currentDir),cumulativeFlags.at("taus").at(currentDir),
->
+                                                                                         cumulativeFlags.at("tau-tau pairs").at(currentDir),scaleFactor);
->
+            else if(currentHistogram.inputCollection == "tau-track pairs") fill2DHistogram(histo,currentHistogram,taus.product(),tracks.product(),
->
+                                                                                           cumulativeFlags.at("taus").at(currentDir),cumulativeFlags.at("tracks").at(currentDir),
->
+                                                                                           cumulativeFlags.at("tau-track pairs").at(currentDir),scaleFactor);
->
+            else if(currentHistogram.inputCollection == "electron-trigobj pairs") fill2DHistogram(histo,currentHistogram,electrons.product(),trigobjs.product(),
->
+                                                                                                  cumulativeFlags.at("electrons").at(currentDir),cumulativeFlags.at("trigobjs").at(currentDir),
->
+                                                                                                  cumulativeFlags.at("electron-trigobj pairs").at(currentDir),scaleFactor);
->
+            else if(currentHistogram.inputCollection == "muon-trigobj pairs") fill2DHistogram(histo,currentHistogram,muons.product(),trigobjs.product(),
->
+                                                                                              cumulativeFlags.at("muons").at(currentDir),cumulativeFlags.at("trigobjs").at(currentDir),
->
+                                                                                              cumulativeFlags.at("muon-trigobj pairs").at(currentDir),scaleFactor);
->
+            else if(currentHistogram.inputCollection == "events") fill2DHistogram(histo,currentHistogram,events.product(),cumulativeFlags.at("events").at(currentDir),scaleFactor);
->
+            else if(currentHistogram.inputCollection == "taus") fill2DHistogram(histo,currentHistogram,taus.product(),cumulativeFlags.at("taus").at(currentDir),scaleFactor);
->
+            else if(currentHistogram.inputCollection == "mets") fill2DHistogram(histo,currentHistogram,mets.product(),cumulativeFlags.at("mets").at(currentDir),scaleFactor);
->
+            else if(currentHistogram.inputCollection == "tracks") fill2DHistogram(histo,currentHistogram,tracks.product(),cumulativeFlags.at("tracks").at(currentDir),scaleFactor);
->
+            else if(currentHistogram.inputCollection == "track-event pairs") fill2DHistogram(histo,currentHistogram,tracks.product(),events.product(),
->
+                                                                                             cumulativeFlags.at("tracks").at(currentDir),cumulativeFlags.at("events").at(currentDir),
->
+                                                                                             cumulativeFlags.at("track-event pairs").at(currentDir),scaleFactor);
->
+            else if(currentHistogram.inputCollection == "genjets") fill2DHistogram(histo,currentHistogram,genjets.product(),cumulativeFlags.at("genjets").at(currentDir),scaleFactor);
->
+            else if(currentHistogram.inputCollection == "mcparticles") fill2DHistogram(histo,currentHistogram,mcparticles.product(),cumulativeFlags.at("mcparticles").at(currentDir),scaleFactor);
->
+            else if(currentHistogram.inputCollection == "primaryvertexs") fill2DHistogram(histo,currentHistogram,primaryvertexs.product(),cumulativeFlags.at("primaryvertexs").at(currentDir),scaleFactor);
->
+            else if(currentHistogram.inputCollection == "bxlumis") fill2DHistogram(histo,currentHistogram,bxlumis.product(),cumulativeFlags.at("bxlumis").at(currentDir),scaleFactor);
->
+            else if(currentHistogram.inputCollection == "photons") fill2DHistogram(histo,currentHistogram,photons.product(),cumulativeFlags.at("photons").at(currentDir),scaleFactor);
->
+            else if(currentHistogram.inputCollection == "superclusters") fill2DHistogram(histo,currentHistogram,superclusters.product(),cumulativeFlags.at("superclusters").at(currentDir),scaleFactor);
->
+            else if(currentHistogram.inputCollection == "trigobjs") fill2DHistogram(histo,currentHistogram,trigobjs.product(),cumulativeFlags.at("trigobjs").at(currentDir),scaleFactor);
->
+            else if(currentHistogram.inputCollection == "stops" && datasetType_ == "signalMC") fill2DHistogram(histo,currentHistogram,stops.product(),cumulativeFlags.at("stops").at(currentDir),scaleFactor);
->
+          }
->
->
+        }
->
->
->
+        //fills histograms with the sizes of collections
->
+        for (uint currentObjectIndex = 0; currentObjectIndex != objectsToPlot.size(); currentObjectIndex++){
->
->
+          string currentObject = objectsToPlot.at(currentObjectIndex);
->
+          string objectToPlot = "";
->
->
+          // Name of objectToPlot here must match the name specified in OSUAnalysis::OSUAnalysis().
->
+          if(currentObject == "muon-muon pairs")                         objectToPlot = "dimuonPairs";
->
+          else if(currentObject == "electron-electron pairs")            objectToPlot = "dielectronPairs";
->
+          else if(currentObject == "electron-muon pairs")                objectToPlot = "electronMuonPairs";
->
+          else if(currentObject == "electron-jet pairs")                 objectToPlot = "electronJetPairs";
->
+          else if(currentObject == "muon-jet pairs")                     objectToPlot = "muonJetPairs";
->
+          else if(currentObject == "jet-jet pairs")                      objectToPlot = "dijetPairs";
->
+          else if(currentObject == "secondary jets")                     objectToPlot = "secondaryJets";
->
+          else if(currentObject == "electron-track pairs")               objectToPlot = "electronTrackPairs";
->
+          else if(currentObject == "muon-track pairs")                   objectToPlot = "muonTrackPairs";
->
+          else if(currentObject == "muon-tau pairs")                     objectToPlot = "muonTauPairs";
->
+          else if(currentObject == "tau-tau pairs")                      objectToPlot = "ditauPairs";
->
+          else if(currentObject == "tau-track pairs")                    objectToPlot = "tauTrackPairs";
->
+          else if(currentObject == "track-event pairs")                  objectToPlot = "trackEventPairs";
->
+          else if(currentObject == "muon-secondary muon pairs")          objectToPlot = "muonSecondaryMuonPairs";
->
+          else if(currentObject == "secondary muons")                    objectToPlot = "secondaryMuons";
->
+          else if(currentObject == "electron-secondary electron pairs")  objectToPlot = "electronSecondaryElectronPairs";
->
+          else if(currentObject == "secondary electrons")                objectToPlot = "secondaryElectrons";
->
+          else if(currentObject == "electron-trigobj pairs")             objectToPlot = "electronTrigobjPairs";
->
+          else if(currentObject == "muon-trigobj pairs")                 objectToPlot = "muonTrigobjPairs";
->
+          else objectToPlot = currentObject;
->
->
+          string tempCurrentObject = objectToPlot;
->
+          tempCurrentObject.at(0) = toupper(tempCurrentObject.at(0));
->
+          string histoName = "num" + tempCurrentObject;
->
->
+          //set position of primary vertex in event, in order to calculate quantities relative to it
->
+          if(find(objectsToCut.begin(), objectsToCut.end(), currentObject) != objectsToCut.end()) {
->
+            vector<bool> lastCutFlags = cumulativeFlags.at(currentObject).at(currentDir);
->
+            int numToPlot = 0;
->
+            for (uint currentFlag = 0; currentFlag != lastCutFlags.size(); currentFlag++){
->
+              if(lastCutFlags.at(currentFlag)) numToPlot++;
->
+            }
->
+            if(objectToPlot == "primaryvertexs"){
->
+              oneDHists_.at(currentChannelIndex).at(currentCut).at(histoName+"BeforePileupCorrection")->Fill(primaryvertexs->size());
->
+              oneDHists_.at(currentChannelIndex).at(currentCut).at(histoName+"AfterPileupCorrection")->Fill(primaryvertexs->size(),scaleFactor);
->
+            }
->
+            else {
->
+              oneDHists_.at(currentChannelIndex).at(currentCut).at(histoName)->Fill(numToPlot,scaleFactor);
->
+            }
->
+          }
->
+        } // end for (uint currentObjectIndex = 0; currentObjectIndex != objectsToPlot.size(); currentObjectIndex++)
->
->
+        if (!BNTrees_.at(currentChannelIndex)) { cout << "ERROR:  Undefined BNTree.  Will likely seg fault." << endl; }
->
+        BNTrees_.at(currentChannelIndex)->Fill();  // only fill if event has passed cuts
-+
+      } // end if(eventPassedPreviousCuts.at(currentDir)){
-+
+    } // end loop over cuts
-<
+    vector<bool> muonFlags = cumulativeFlags["muons"].back();
-<
+    int muonCounter = 0;
-<
->
+  } // end loop over channel
-–
+    for (uint muonIndex = 0; muonIndex != muonFlags.size(); muonIndex++){
-–
+      if(!muonFlags.at(muonIndex)) continue;
-–
+      muonCounter++;
-<
+      oneDHists_.at(currentChannelIndex)["muonPt"]->Fill (muons->at(muonIndex).pt);
-<
+      oneDHists_.at(currentChannelIndex)["muonEta"]->Fill (muons->at(muonIndex).eta);
-<
+      oneDHists_.at(currentChannelIndex)["muonD0"]->Fill (muons->at(muonIndex).correctedD0Vertex);
-<
+      oneDHists_.at(currentChannelIndex)["muonAbsD0"]->Fill (fabs(muons->at(muonIndex).correctedD0Vertex));
-<
+      oneDHists_.at(currentChannelIndex)["muonD0Sig"]->Fill (muons->at(muonIndex).correctedD0Vertex / muons->at(muonIndex).tkD0err);
-<
+      oneDHists_.at(currentChannelIndex)["muonAbsD0Sig"]->Fill (fabs(muons->at(muonIndex).correctedD0Vertex) / muons->at(muonIndex).tkD0err);
-<
+      oneDHists_.at(currentChannelIndex)["muonIso"]->Fill (((muons->at(muonIndex).trackIso + muons->at(muonIndex).caloIso) / muons->at(muonIndex).pt));
-<
+    }
-<
+    oneDHists_.at(currentChannelIndex)["numMuons"]->Fill (muonCounter);
->
+  masterCutFlow_->fillCutFlow(masterScaleFactor);
-+
+} // end void OSUAnalysis::analyze (const edm::Event &event, const edm::EventSetup &setup)
-<
+  } //end loop over channel
->
+bool
->
+OSUAnalysis::evaluateComparison (double testValue, string comparison, double cutValue){
-–
+  masterCutFlow_->fillCutFlow();
-+
+  if(comparison == ">")       return testValue >  cutValue;
-+
+  else if(comparison == ">=") return testValue >= cutValue;
-+
+  else if(comparison == "<")  return testValue <  cutValue;
-+
+  else if(comparison == "<=") return testValue <= cutValue;
-+
+  else if(comparison == "==") return testValue == cutValue;
-+
+  else if(comparison == "=") return testValue == cutValue;
-+
+  else if(comparison == "!=") return testValue != cutValue;
-+
+  else {cout << "WARNING: invalid comparison operator '" << comparison << "'\n"; return false;}
-<
-<
+bool
-<
+OSUAnalysis::evaluateComparison (double testValue, string comparison, double cutValue){
->
+bool
->
+OSUAnalysis::evaluateComparison (string testValue, string comparison, string cutValue){
+  if(comparison == ">")       return testValue >  cutValue;
+  else if(comparison == ">=") return testValue >= cutValue;
+  else if(comparison == "<")  return testValue <  cutValue;
+  else if(comparison == "<=") return testValue <= cutValue;
-<
+  else {std::cout << "WARNING: invalid comparison operator '" << comparison << "'\n"; return false;}
->
+  else if(comparison == "==") return testValue == cutValue;
->
+  else if(comparison == "=") return testValue == cutValue;
->
+  else if(comparison == "!=") return testValue != cutValue;
->
+  else {cout << "WARNING: invalid comparison operator '" << comparison << "'\n"; return false;}
+bool
-<
+OSUAnalysis::evaluateTriggers (vector<string> triggersToTest, const BNtriggerCollection* triggerCollection){
->
+OSUAnalysis::evaluateTriggers (vector<string> triggersToTest, vector<string> triggersToVeto, const BNtriggerCollection* triggerCollection){
-+
+  //initialize to false until a chosen trigger is passed
+  bool triggerDecision = false;
-<
+  for (BNtriggerCollection::const_iterator trigger = triggerCollection->begin (); trigger != triggerCollection->end (); trigger++)
-<
+    {
-<
+      if(trigger->pass != 1) continue;
-<
+      for(uint triggerName = 0; triggerName != triggersToTest.size(); triggerName++)
-<
+        {
-<
+          if(trigger->name.find(triggersToTest.at(triggerName))!=std::string::npos){
-<
+            triggerDecision = true;
-<
+          }
-<
+        }
->
+  if (printAllTriggers_) cout << "Printing list of all available triggers (which this event may or may not pass):" << endl;
->
+  //loop over all triggers defined in the event
->
+  for (BNtriggerCollection::const_iterator trigger = triggerCollection->begin (); trigger != triggerCollection->end (); trigger++){
->
->
+    if (printAllTriggers_) cout << "   " << trigger->name << endl;
->
->
+    //we're only interested in triggers that actually passed
->
+    if(trigger->pass != 1) continue;
->
->
+    //if the event passes one of the veto triggers, exit and return false
->
+    for(uint triggerName = 0; triggerName != triggersToVeto.size(); triggerName++){
->
+      if(trigger->name.find(triggersToVeto.at(triggerName))!=string::npos) return false;
-<
+  return triggerDecision;
->
+    //if the event passes one of the chosen triggers, set triggerDecision to true
->
+    for(uint triggerName = 0; triggerName != triggersToTest.size(); triggerName++){
->
+      if(trigger->name.find(triggersToTest.at(triggerName))!=string::npos) triggerDecision = true;
->
+    }
->
+  }
-+
+  printAllTriggers_ = false;  // only print triggers once, not every event
-+
-+
+  //if none of the veto triggers fired:
-+
+  //return the OR of all the chosen triggers
-+
+  if (triggersToTest.size() != 0) return triggerDecision;
-+
+  //or if no triggers were defined return true
-+
+  else return true;
-<
+std::vector<std::string>
->
->
+vector<string>
+OSUAnalysis::splitString (string inputString){
-<
+  std::stringstream stringStream(inputString);
-<
+  std::istream_iterator<std::string> begin(stringStream);
-<
+  std::istream_iterator<std::string> end;
-<
+  std::vector<std::string> stringVector(begin, end);
->
+  stringstream stringStream(inputString);
->
+  istream_iterator<string> begin(stringStream);
->
+  istream_iterator<string> end;
->
+  vector<string> stringVector(begin, end);
+  return stringVector;
-+
-+
+void OSUAnalysis::getTwoObjs(string tempInputCollection, string& obj1, string& obj2) {
-+
+  // Set two object strings from the tempInputCollection string,
-+
+  // For example, if tempInputCollection is "electron-muon pairs",
-+
+  // then obj1 = "electrons" and obj2 = "muons".
-+
+  // Note that the objects have an "s" appended.
-+
-+
+  int dashIndex = tempInputCollection.find("-");
-+
+  int spaceIndex = tempInputCollection.find_last_of(" ");
-+
+  int secondWordLength = spaceIndex - dashIndex;
-+
+  obj1 = tempInputCollection.substr(0,dashIndex) + "s";
-+
+  obj2 = tempInputCollection.substr(dashIndex+1,secondWordLength-1)+"s";
-+
-+
+}
-+
-+
-+
+string OSUAnalysis::getObjToGet(string obj) {
-+
+  // Return the string corresponding to the object to get for the given obj string.
-+
+  // Right now this only handles the case in which obj contains "secondary",
-+
+  // e.g, "secondary muons".
-+
+  // Note that "s" is NOT appended.
-+
-+
+  if (obj.find("secondary")==string::npos) return obj;  // "secondary" is not found
-+
+  int firstSpaceIndex = obj.find_first_of(" ");
-+
+  return obj.substr(firstSpaceIndex+1,obj.length()-1);
-+
-+
+}
-+
-+
-+
+//!jet valueLookup
+double
-<
+OSUAnalysis::valueLookup (const BNjet* object, string variable, string function){
->
+OSUAnalysis::valueLookup (const BNjet* object, string variable, string function, string &stringValue){
+  double value = 0.0;
+  if(variable == "energy") value = object->energy;
+  else if(variable == "puJetId_loose_full") value = object->puJetId_loose_full;
+  else if(variable == "puJetId_loose_simple") value = object->puJetId_loose_simple;
+  else if(variable == "puJetId_loose_cutbased") value = object->puJetId_loose_cutbased;
-<
-<
-<
+  else{std::cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
-<
->
->
->
+  else{cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
->
+  value = applyFunction(function, value);
+  return value;
-<
->
+//!muon valueLookup
+double
-<
+OSUAnalysis::valueLookup (const BNmuon* object, string variable, string function){
->
+OSUAnalysis::valueLookup (const BNmuon* object, string variable, string function, string &stringValue){
+  double value = 0.0;
+  if(variable == "energy") value = object->energy;
+  else if(variable == "ecalIso") value = object->ecalIso;
+  else if(variable == "hcalIso") value = object->hcalIso;
+  else if(variable == "caloIso") value = object->caloIso;
-<
+  else if(variable == "trackIsoDR03") value = object->trackIsoDR03;
->
+  else if(variable == "trackIsDR03") value = object->trackIsoDR03;
+  else if(variable == "ecalIsoDR03") value = object->ecalIsoDR03;
+  else if(variable == "hcalIsoDR03") value = object->hcalIsoDR03;
+  else if(variable == "caloIsoDR03") value = object->caloIsoDR03;
+  else if(variable == "numberOfMatchedStations") value = object->numberOfMatchedStations;
+  else if(variable == "time_ndof") value = object->time_ndof;
-<
+  else{std::cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
-<
->
+  //user-defined variables
->
+  else if(variable == "correctedD0VertexErr") value =  hypot (object->tkD0err, hypot (chosenVertex ()->xError, chosenVertex ()->yError));
->
+  else if(variable == "correctedD0VertexSig") value =  object->correctedD0Vertex / hypot (object->tkD0err, hypot (chosenVertex ()->xError, chosenVertex ()->yError));
->
+  else if(variable == "detIso") value = (object->trackIsoDR03) / object->pt;
->
+  else if(variable == "relPFdBetaIso") value = (object->pfIsoR04SumChargedHadronPt + max(0.0, object->pfIsoR04SumNeutralHadronEt + object->pfIsoR04SumPhotonEt - 0.5*object->pfIsoR04SumPUPt)) / object->pt;
->
+  else if(variable == "relPFrhoIso") value = ( object->chargedHadronIso + max(0.0, object->neutralHadronIso + object->photonIso - object->AEffDr03*object->rhoPrime) ) / object->pt;
->
+  else if(variable == "metMT") {
->
+    if (const BNmet *met = chosenMET ())
->
+      {
->
+        double dPhi = deltaPhi (object->phi, met->phi);
->
+        value = sqrt (2 * object->pt * met->pt * (1 - cos (dPhi)));
->
+      }
->
+    else
->
+      value = -999;
->
+  }
->
->
->
->
+  else if(variable == "correctedD0VertexInEBPlus"){
->
+    if(fabs(object->eta) < 0.8 && object->eta > 0) value = object->correctedD0Vertex;
->
+    else value = -999;
->
+  }
->
+  else if(variable == "correctedD0VertexOutEBPlus"){
->
+    if(fabs(object->eta) < 1.479 && fabs(object->eta) > 0.8 && object->eta > 0) value = object->correctedD0Vertex;
->
+    else value = -999;
->
+  }
->
+  else if(variable == "correctedD0VertexEEPlus"){
->
+    if(fabs(object->eta) > 1.479 && object->eta > 0) value = object->correctedD0Vertex;
->
+    else value = -999;
->
+  }
->
->
+  else if(variable == "correctedD0BeamspotInEBPlus"){
->
+    if(fabs(object->eta) < 0.8 && object->eta > 0) value = object->correctedD0;
->
+    else value = -999;
->
+  }
->
+  else if(variable == "correctedD0BeamspotOutEBPlus"){
->
+    if(fabs(object->eta) < 1.479 && fabs(object->eta) > 0.8 && object->eta > 0) value = object->correctedD0;
->
+    else value = -999;
->
+  }
->
+  else if(variable == "correctedD0BeamspotEEPlus"){
->
+    if(fabs(object->eta) > 1.479 && object->eta > 0) value = object->correctedD0;
->
+    else value = -999;
->
+  }
->
->
+  else if(variable == "correctedD0VertexInEBMinus"){
->
+    if(fabs(object->eta) < 0.8 && object->eta < 0) value = object->correctedD0Vertex;
->
+    else value = -999;
->
+  }
->
+  else if(variable == "correctedD0VertexOutEBMinus"){
->
+    if(fabs(object->eta) < 1.479 && fabs(object->eta) > 0.8 && object->eta < 0) value = object->correctedD0Vertex;
->
+    else value = -999;
->
+  }
->
+  else if(variable == "correctedD0VertexEEMinus"){
->
+    if(fabs(object->eta) > 1.479 && object->eta < 0) value = object->correctedD0Vertex;
->
+    else value = -999;
->
+  }
->
->
+  else if(variable == "correctedD0BeamspotInEBMinus"){
->
+    if(fabs(object->eta) < 0.8 && object->eta < 0) value = object->correctedD0;
->
+    else value = -999;
->
+  }
->
+  else if(variable == "correctedD0BeamspotOutEBMinus"){
->
+    if(fabs(object->eta) < 1.479 && fabs(object->eta) > 0.8 && object->eta < 0) value = object->correctedD0;
->
+    else value = -999;
->
+  }
->
+  else if(variable == "correctedD0BeamspotEEMinus"){
->
+    if(fabs(object->eta) > 1.479 && object->eta < 0) value = object->correctedD0;
->
+    else value = -999;
->
+  }
->
->
->
+  else if(variable == "correctedD0VertexInEBPositiveCharge"){
->
+    if(fabs(object->eta) < 0.8 && object->charge > 0) value = object->correctedD0Vertex;
->
+    else value = -999;
->
+  }
->
+  else if(variable == "correctedD0VertexOutEBPositiveCharge"){
->
+    if(fabs(object->eta) < 1.479 && fabs(object->eta) > 0.8 && object->charge > 0) value = object->correctedD0Vertex;
->
+    else value = -999;
->
+  }
->
+  else if(variable == "correctedD0VertexEEPositiveCharge"){
->
+    if(fabs(object->eta) > 1.479 && object->charge > 0) value = object->correctedD0Vertex;
->
+    else value = -999;
->
+  }
->
->
+  else if(variable == "correctedD0BeamspotInEBPositiveCharge"){
->
+    if(fabs(object->eta) < 0.8 && object->charge > 0) value = object->correctedD0;
->
+    else value = -999;
->
+  }
->
+  else if(variable == "correctedD0BeamspotOutEBPositiveCharge"){
->
+    if(fabs(object->eta) < 1.479 && fabs(object->eta) > 0.8 && object->charge > 0) value = object->correctedD0;
->
+    else value = -999;
->
+  }
->
+  else if(variable == "correctedD0BeamspotEEPositiveCharge"){
->
+    if(fabs(object->eta) > 1.479 && object->charge > 0) value = object->correctedD0;
->
+    else value = -999;
->
+  }
->
->
+  else if(variable == "correctedD0VertexInEBNegativeCharge"){
->
+    if(fabs(object->eta) < 0.8 && object->charge < 0) value = object->correctedD0Vertex;
->
+    else value = -999;
->
+  }
->
+  else if(variable == "correctedD0VertexOutEBNegativeCharge"){
->
+    if(fabs(object->eta) < 1.479 && fabs(object->eta) > 0.8 && object->charge < 0) value = object->correctedD0Vertex;
->
+    else value = -999;
->
+  }
->
+  else if(variable == "correctedD0VertexEENegativeCharge"){
->
+    if(fabs(object->eta) > 1.479 && object->charge < 0) value = object->correctedD0Vertex;
->
+    else value = -999;
->
+  }
->
->
+  else if(variable == "correctedD0BeamspotInEBNegativeCharge"){
->
+    if(fabs(object->eta) < 0.8 && object->charge < 0) value = object->correctedD0;
->
+    else value = -999;
->
+  }
->
+  else if(variable == "correctedD0BeamspotOutEBNegativeCharge"){
->
+    if(fabs(object->eta) < 1.479 && fabs(object->eta) > 0.8 && object->charge < 0) value = object->correctedD0;
->
+    else value = -999;
->
+  }
->
+  else if(variable == "correctedD0BeamspotEENegativeCharge"){
->
+    if(fabs(object->eta) > 1.479 && object->charge < 0) value = object->correctedD0;
->
+    else value = -999;
->
+  }
->
->
->
+  else if(variable == "tightID") {
->
+    value = object->isGlobalMuon > 0                \
->
+      && object->isPFMuon > 0                        \
->
+      && object->normalizedChi2 < 10                \
->
+      && object->numberOfValidMuonHits > 0        \
->
+      && object->numberOfMatchedStations > 1        \
->
+      && fabs(object->correctedD0Vertex) < 0.2        \
->
+      && fabs(object->correctedDZ) < 0.5        \
->
+      && object->numberOfValidPixelHits > 0                \
->
+      && object->numberOfLayersWithMeasurement > 5;
->
+  }
->
+  else if(variable == "tightIDdisplaced"){
->
+    value = object->isGlobalMuon > 0                \
->
+      && object->isPFMuon > 0                        \
->
+      && object->normalizedChi2 < 10                \
->
+      && object->numberOfValidMuonHits > 0        \
->
+      && object->numberOfMatchedStations > 1        \
->
+      && object->numberOfValidPixelHits > 0        \
->
+      && object->numberOfLayersWithMeasurement > 5;
->
+  }
->
->
+  else if(variable == "genDeltaRLowest") value = getGenDeltaRLowest(object);
->
->
+  else if(variable == "genMatchedPdgId"){
->
+    int index = getGenMatchedParticleIndex(object);
->
+    if(index == -1) value = 0;
->
+    else value = mcparticles->at(index).id;
->
+  }
->
->
+  else if(variable == "genMatchedId"){
->
+    int index = getGenMatchedParticleIndex(object);
->
+    if(index == -1) value = 0;
->
+    else value = getPdgIdBinValue(mcparticles->at(index).id);
->
+  }
->
+  else if(variable == "genMatchedMotherId"){
->
+    int index = getGenMatchedParticleIndex(object);
->
+    if(index == -1) value = 0;
->
+    else value = getPdgIdBinValue(mcparticles->at(index).motherId);
->
+  }
->
+  else if(variable == "genMatchedMotherIdReverse"){
->
+    int index = getGenMatchedParticleIndex(object);
->
+    if(index == -1) value = 24;
->
+    else value = 24 - getPdgIdBinValue(mcparticles->at(index).motherId);
->
+  }
->
+  else if(variable == "genMatchedGrandmotherId"){
->
+    int index = getGenMatchedParticleIndex(object);
->
+    if(index == -1) value = 0;
->
+    else if(fabs(mcparticles->at(index).motherId) == 15){
->
+      int motherIndex = findTauMotherIndex(&mcparticles->at(index));
->
+      if(motherIndex == -1) value = 0;
->
+      else value = getPdgIdBinValue(mcparticles->at(motherIndex).motherId);
->
+    }
->
+    else value = getPdgIdBinValue(mcparticles->at(index).grandMotherId);
->
+  }
->
+  else if(variable == "genMatchedGrandmotherIdReverse"){
->
+    int index = getGenMatchedParticleIndex(object);
->
+    if(index == -1) value = 24;
->
+    else if(fabs(mcparticles->at(index).motherId) == 15){
->
+      int motherIndex = findTauMotherIndex(&mcparticles->at(index));
->
+      if(motherIndex == -1) value = 24;
->
+      else value = 24 - getPdgIdBinValue(mcparticles->at(motherIndex).motherId);
->
+    }
->
+    else value = 24 - getPdgIdBinValue(mcparticles->at(index).grandMotherId);
->
+  }
->
+  else if(variable == "pfMuonsFromVertex"){
->
+    double d0Error, dzError;
->
->
+    d0Error = hypot (object->tkD0err, hypot (chosenVertex ()->xError, chosenVertex ()->yError));
->
+    dzError = hypot (object->tkDZerr, chosenVertex ()->zError);
->
+    value = fabs (object->correctedD0Vertex) > 0.2 || fabs (object->correctedDZ) > 0.5
->
+      || fabs (object->correctedD0Vertex / d0Error) > 99.0
->
+      || fabs (object->correctedDZ / dzError) > 99.0;
->
+    value = (object->isStandAloneMuon && !object->isTrackerMuon && !object->isGlobalMuon) || !value;
->
+  }
->
->
->
->
+  else{cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
->
+  value = applyFunction(function, value);
+  return value;
-<
->
+//!electron valueLookup
+double
-<
+OSUAnalysis::valueLookup (const BNelectron* object, string variable, string function){
->
+OSUAnalysis::valueLookup (const BNelectron* object, string variable, string function, string &stringValue){
+  double value = 0.0;
+  if(variable == "energy") value = object->energy;
+  else if(variable == "eidHyperTight4MC") value = object->eidHyperTight4MC;
+  else if(variable == "passConvVeto") value = object->passConvVeto;
-+
+  //user-defined variables
-+
+  else if(variable == "correctedD0VertexErr") value =  hypot (object->tkD0err, hypot (chosenVertex ()->xError, chosenVertex ()->yError));
-+
+  else if(variable == "correctedD0VertexSig") value =  object->correctedD0Vertex / hypot (object->tkD0err, hypot (chosenVertex ()->xError, chosenVertex ()->yError));
-+
+  else if(variable == "detIso") value = (object->trackIso) / object->pt;
-+
+  else if(variable == "relPFrhoIso") value = ( object->chargedHadronIsoDR03 + max(0.0, object->neutralHadronIsoDR03 + object->photonIsoDR03 - object->AEffDr03*object->rhoPrime) ) / object->pt;
-+
+  else if(variable == "metMT") {
-+
+    if (const BNmet *met = chosenMET ())
-+
+      {
-+
+        double dPhi = deltaPhi (object->phi, met->phi);
-+
+        value = sqrt (2 * object->pt * met->pt * (1 - cos (dPhi)));
-+
+      }
-+
+    else
-+
+      value = -999;
-+
+  }
-+
-+
+  else if(variable == "correctedD0VertexEEPositiveChargeLowPt"){
-+
+    if(fabs(object->eta) > 1.479 && object->charge > 0 && object->pt > 45) value = object->correctedD0Vertex;
-+
+    else value = -999;
-+
+  }
-+
+  else if(variable == "correctedD0VertexEEPositiveChargeHighPt"){
-+
+    if(fabs(object->eta) > 1.479 && object->charge > 0 && object->pt < 45) value = object->correctedD0Vertex;
-+
+    else value = -999;
-+
+  }
-+
-+
+  else if(variable == "correctedD0VertexInEBPlus"){
-+
+    if(fabs(object->eta) < 0.8 && object->eta > 0) value = object->correctedD0Vertex;
-+
+    else value = -999;
-+
+  }
-+
+  else if(variable == "correctedD0VertexOutEBPlus"){
-+
+    if(object->isEB && fabs(object->eta) > 0.8 && object->eta > 0) value = object->correctedD0Vertex;
-+
+    else value = -999;
-+
+  }
-+
+  else if(variable == "correctedD0VertexEEPlus"){
-+
+    if(object->isEE && object->eta > 0) value = object->correctedD0Vertex;
-+
+    else value = -999;
-+
+  }
-+
-+
+  else if(variable == "correctedD0BeamspotInEBPlus"){
-+
+    if(fabs(object->eta) < 0.8 && object->eta > 0) value = object->correctedD0;
-+
+    else value = -999;
-+
+  }
-+
+  else if(variable == "correctedD0BeamspotOutEBPlus"){
-+
+    if(object->isEB && fabs(object->eta) > 0.8 && object->eta > 0) value = object->correctedD0;
-+
+    else value = -999;
-+
+  }
-+
+  else if(variable == "correctedD0BeamspotEEPlus"){
-+
+    if(object->isEE && object->eta > 0) value = object->correctedD0;
-+
+    else value = -999;
-+
+  }
-+
-+
+  else if(variable == "correctedD0VertexInEBMinus"){
-+
+    if(fabs(object->eta) < 0.8 && object->eta < 0) value = object->correctedD0Vertex;
-+
+    else value = -999;
-+
+  }
-+
+  else if(variable == "correctedD0VertexOutEBMinus"){
-+
+    if(object->isEB && fabs(object->eta) > 0.8 && object->eta < 0) value = object->correctedD0Vertex;
-+
+    else value = -999;
-+
+  }
-+
+  else if(variable == "correctedD0VertexEEMinus"){
-+
+    if(object->isEE && object->eta < 0) value = object->correctedD0Vertex;
-+
+    else value = -999;
-+
+  }
-+
-+
+  else if(variable == "correctedD0BeamspotInEBMinus"){
-+
+    if(fabs(object->eta) < 0.8 && object->eta < 0) value = object->correctedD0;
-+
+    else value = -999;
-+
+  }
-+
+  else if(variable == "correctedD0BeamspotOutEBMinus"){
-+
+    if(object->isEB && fabs(object->eta) > 0.8 && object->eta < 0) value = object->correctedD0;
-+
+    else value = -999;
-+
+  }
-+
+  else if(variable == "correctedD0BeamspotEEMinus"){
-+
+    if(object->isEE && object->eta < 0) value = object->correctedD0;
-+
+    else value = -999;
-+
+  }
-+
-+
+  else if(variable == "tightID"){
-+
+    if (object->isEB)
-+
+      {
-+
+        value = fabs(object->delEtaIn) < 0.004 \
-+
+          && fabs (object->delPhiIn) < 0.03 \
-+
+          && object->scSigmaIEtaIEta < 0.01 \
-+
+          && object->hadOverEm < 0.12 \
-+
+          && fabs (object->correctedD0Vertex) < 0.02 \
-+
+          && fabs (object->correctedDZ) < 0.1 \
-+
+          && object->absInvEMinusInvPin < 0.05 \
-+
+          && object->passConvVeto;
-+
+      }
-+
+    else
-+
+      {
-+
+        value = fabs(object->delEtaIn) < 0.005 \
-+
+          && fabs (object->delPhiIn) < 0.02 \
-+
+          && object->scSigmaIEtaIEta < 0.03 \
-+
+          && object->hadOverEm < 0.10 \
-+
+          && fabs (object->correctedD0Vertex) < 0.02 \
-+
+          && fabs (object->correctedDZ) < 0.1 \
-+
+          && object->absInvEMinusInvPin < 0.05 \
-+
+          && object->passConvVeto;
-+
+      }
-+
+  }
-+
-+
+  else if(variable == "correctedD0VertexInEBPositiveCharge"){
-+
+    if(fabs(object->eta) < 0.8 && object->charge > 0) value = object->correctedD0Vertex;
-+
+    else value = -999;
-+
+  }
-+
+  else if(variable == "correctedD0VertexOutEBPositiveCharge"){
-+
+    if(object->isEB && fabs(object->eta) > 0.8 && object->charge > 0) value = object->correctedD0Vertex;
-+
+    else value = -999;
-+
+  }
-+
+  else if(variable == "correctedD0VertexEEPositiveCharge"){
-+
+    if(object->isEE && object->charge > 0) value = object->correctedD0Vertex;
-+
+    else value = -999;
-+
+  }
-+
-+
+  else if(variable == "correctedD0BeamspotInEBPositiveCharge"){
-+
+    if(fabs(object->eta) < 0.8 && object->charge > 0) value = object->correctedD0;
-+
+    else value = -999;
-+
+  }
-+
+  else if(variable == "correctedD0BeamspotOutEBPositiveCharge"){
-+
+    if(object->isEB && fabs(object->eta) > 0.8 && object->charge > 0) value = object->correctedD0;
-+
+    else value = -999;
-+
+  }
-+
+  else if(variable == "correctedD0BeamspotEEPositiveCharge"){
-+
+    if(object->isEE && object->charge > 0) value = object->correctedD0;
-+
+    else value = -999;
-+
+  }
-+
-+
+  else if(variable == "correctedD0VertexInEBNegativeCharge"){
-+
+    if(fabs(object->eta) < 0.8 && object->charge < 0) value = object->correctedD0Vertex;
-+
+    else value = -999;
-+
+  }
-+
+  else if(variable == "correctedD0VertexOutEBNegativeCharge"){
-+
+    if(object->isEB && fabs(object->eta) > 0.8 && object->charge < 0) value = object->correctedD0Vertex;
-+
+    else value = -999;
-+
+  }
-+
+  else if(variable == "correctedD0VertexEENegativeCharge"){
-+
+    if(object->isEE && object->charge < 0) value = object->correctedD0Vertex;
-+
+    else value = -999;
-+
+  }
-+
-+
+  else if(variable == "correctedD0BeamspotInEBNegativeCharge"){
-+
+    if(fabs(object->eta) < 0.8 && object->charge < 0) value = object->correctedD0;
-+
+    else value = -999;
-+
+  }
-+
+  else if(variable == "correctedD0BeamspotOutEBNegativeCharge"){
-+
+    if(object->isEB && fabs(object->eta) > 0.8 && object->charge < 0) value = object->correctedD0;
-+
+    else value = -999;
-+
+  }
-+
+  else if(variable == "correctedD0BeamspotEENegativeCharge"){
-+
+    if(object->isEE && object->charge < 0) value = object->correctedD0;
-+
+    else value = -999;
-+
+  }
-+
-+
-+
+  else if(variable == "tightIDdisplaced"){
-+
+    if (object->isEB)
-+
+      {
-+
+        value = fabs(object->delEtaIn) < 0.004 \
-+
+          && fabs (object->delPhiIn) < 0.03 \
-+
+          && object->scSigmaIEtaIEta < 0.01 \
-+
+          && object->hadOverEm < 0.12 \
-+
+          && object->absInvEMinusInvPin < 0.05;
-+
+      }
-+
+    else
-+
+      {
-+
+        value = fabs (object->delEtaIn) < 0.005 \
-+
+          && fabs (object->delPhiIn) < 0.02 \
-+
+          && object->scSigmaIEtaIEta < 0.03 \
-+
+          && object->hadOverEm < 0.10 \
-+
+          && object->absInvEMinusInvPin < 0.05;
-+
+      }
-+
+  }
-+
-+
-+
+  else if(variable == "genDeltaRLowest") value = getGenDeltaRLowest(object);
-+
-+
+  else if(variable == "genMatchedPdgId"){
-+
+    int index = getGenMatchedParticleIndex(object);
-+
+    if(index == -1) value = 0;
-+
+    else value = mcparticles->at(index).id;
-+
+  }
-+
-+
-+
+  else if(variable == "genMatchedId"){
-+
+    int index = getGenMatchedParticleIndex(object);
-+
+    if(index == -1) value = 0;
-+
+    else value = getPdgIdBinValue(mcparticles->at(index).id);
-+
+  }
-+
+  else if(variable == "genMatchedMotherId"){
-+
+    int index = getGenMatchedParticleIndex(object);
-+
+    if(index == -1) value = 0;
-+
+    else value = getPdgIdBinValue(mcparticles->at(index).motherId);
-+
+  }
-+
+  else if(variable == "genMatchedMotherIdReverse"){
-+
+    int index = getGenMatchedParticleIndex(object);
-+
+    if(index == -1) value = 24;
-+
+    else value = 24 -getPdgIdBinValue(mcparticles->at(index).motherId);
-+
+  }
-+
+  else if(variable == "genMatchedGrandmotherId"){
-+
+    int index = getGenMatchedParticleIndex(object);
-+
+    if(index == -1) value = 0;
-+
+    else if(fabs(mcparticles->at(index).motherId) == 15){
-+
+      int motherIndex = findTauMotherIndex(&mcparticles->at(index));
-+
+      if(motherIndex == -1) value = 0;
-+
+      else value = getPdgIdBinValue(mcparticles->at(motherIndex).motherId);
-+
+    }
-+
+    else value = getPdgIdBinValue(mcparticles->at(index).grandMotherId);
-+
+  }
-+
+  else if(variable == "genMatchedGrandmotherIdReverse"){
-+
+    int index = getGenMatchedParticleIndex(object);
-+
+    if(index == -1) value = 24;
-+
+    else if(fabs(mcparticles->at(index).motherId) == 15){
-+
+      int motherIndex = findTauMotherIndex(&mcparticles->at(index));
-+
+      if(motherIndex == -1) value = 24;
-+
+      else value = 24 - getPdgIdBinValue(mcparticles->at(motherIndex).motherId);
-+
+    }
-+
+    else value = 24 - getPdgIdBinValue(mcparticles->at(index).grandMotherId);
-+
+  }
-+
+  else if(variable == "pfElectronsFromVertex"){
-+
+    double d0Error, dzError;
-+
-+
+    d0Error = hypot (object->tkD0err, hypot (chosenVertex ()->xError, chosenVertex ()->yError));
-+
+    dzError = hypot (object->tkDZerr, chosenVertex ()->zError);
-+
+    value = fabs (object->correctedD0Vertex) > 0.2 || fabs (object->correctedDZ) > 0.5
-+
+      || fabs (object->correctedD0Vertex / d0Error) > 99.0
-+
+      || fabs (object->correctedDZ / dzError) > 99.0;
-+
+    value = !value;
-+
+  }
-+
-+
-+
-+
+  else{cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
-–
+  else{std::cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
-–
+  value = applyFunction(function, value);
+  return value;
-<
->
+//!event valueLookup
+double
-<
+OSUAnalysis::valueLookup (const BNevent* object, string variable, string function){
->
+OSUAnalysis::valueLookup (const BNevent* object, string variable, string function, string &stringValue){
+  double value = 0.0;
+  else if(variable == "id1") value = object->id1;
+  else if(variable == "id2") value = object->id2;
+  else if(variable == "evt") value = object->evt;
-+
+  else if(variable == "puScaleFactor"){
-+
+    if(doPileupReweighting_ && datasetType_ != "data")
-+
+      value = puWeight_->at (events->at (0).numTruePV);
-+
+    else
-+
+      value = 1.0;
-+
+  }
-+
+  else if(variable == "muonScaleFactor") value = muonScaleFactor_;
-+
+  else if(variable == "electronScaleFactor") value = electronScaleFactor_;
-+
+  else if(variable == "stopCTauScaleFactor") value = stopCTauScaleFactor_;
-+
+  else if(variable == "bTagScaleFactor") value = bTagScaleFactor_;
-+
+  else{cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
-–
+  else{std::cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
-–
+  value = applyFunction(function, value);
+  return value;
-+
+//!tau valueLookup
+double
-<
+OSUAnalysis::valueLookup (const BNtau* object, string variable, string function){
->
+OSUAnalysis::valueLookup (const BNtau* object, string variable, string function, string &stringValue){
+  double value = 0.0;
+  else if(variable == "leadingTrackValid") value = object->leadingTrackValid;
-<
+  else{std::cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
-<
->
->
+  else if(variable == "genDeltaRLowest") value = getGenDeltaRLowest(object);
->
->
+  else if(variable == "genMatchedPdgId"){
->
+    int index = getGenMatchedParticleIndex(object);
->
+    if(index == -1) value = 0;
->
+    else value = mcparticles->at(index).id;
->
+  }
->
->
+  else if(variable == "genMatchedId"){
->
+    int index = getGenMatchedParticleIndex(object);
->
+    if(index == -1) value = 0;
->
+    else value = getPdgIdBinValue(mcparticles->at(index).id);
->
+  }
->
+  else if(variable == "genMatchedMotherId"){
->
+    int index = getGenMatchedParticleIndex(object);
->
+    if(index == -1) value = 0;
->
+    else value = getPdgIdBinValue(mcparticles->at(index).motherId);
->
+  }
->
+  else if(variable == "genMatchedMotherIdReverse"){
->
+    int index = getGenMatchedParticleIndex(object);
->
+    if(index == -1) value = 24;
->
+    else value = 24 -getPdgIdBinValue(mcparticles->at(index).motherId);
->
+  }
->
+  else if(variable == "genMatchedGrandmotherId"){
->
+    int index = getGenMatchedParticleIndex(object);
->
+    if(index == -1) value = 0;
->
+    else if(fabs(mcparticles->at(index).motherId) == 15){
->
+      int motherIndex = findTauMotherIndex(&mcparticles->at(index));
->
+      if(motherIndex == -1) value = 0;
->
+      else value = getPdgIdBinValue(mcparticles->at(motherIndex).motherId);
->
+    }
->
+    else value = getPdgIdBinValue(mcparticles->at(index).grandMotherId);
->
+  }
->
+  else if(variable == "genMatchedGrandmotherIdReverse"){
->
+    int index = getGenMatchedParticleIndex(object);
->
+    if(index == -1) value = 24;
->
+    else if(fabs(mcparticles->at(index).motherId) == 15){
->
+      int motherIndex = findTauMotherIndex(&mcparticles->at(index));
->
+      if(motherIndex == -1) value = 24;
->
+      else value = 24 - getPdgIdBinValue(mcparticles->at(motherIndex).motherId);
->
+    }
->
+    else value = 24 - getPdgIdBinValue(mcparticles->at(index).grandMotherId);
->
+  }
->
->
->
+  else{cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
->
+  value = applyFunction(function, value);
+  return value;
-+
+//!met valueLookup
+double
-<
+OSUAnalysis::valueLookup (const BNmet* object, string variable, string function){
->
+OSUAnalysis::valueLookup (const BNmet* object, string variable, string function, string &stringValue){
+  double value = 0.0;
+  else if(variable == "pfT1jet10pt") value = object->pfT1jet10pt;
+  else if(variable == "pfT1jet10phi") value = object->pfT1jet10phi;
-<
+  else{std::cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
-<
->
+  else{cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
->
+  value = applyFunction(function, value);
+  return value;
-+
+//!track valueLookup
+double
-<
+OSUAnalysis::valueLookup (const BNtrack* object, string variable, string function){
->
+OSUAnalysis::valueLookup (const BNtrack* object, string variable, string function, string &stringValue){
+  double value = 0.0;
-+
+  double pMag = sqrt(object->pt * object->pt +
-+
+                     object->pz * object->pz);
+  if(variable == "pt") value = object->pt;
+  else if(variable == "px") value = object->px;
+  else if(variable == "isHighPurity") value = object->isHighPurity;
-<
+  else{std::cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
-<
->
+  //additional BNs info for disappTrks
->
+  else if(variable == "caloEMDeltaRp3") value = object->caloEMDeltaRp3;
->
+  else if(variable == "caloHadDeltaRp3") value = object->caloHadDeltaRp3;
->
+  else if(variable == "caloEMDeltaRp4") value = object->caloEMDeltaRp4;
->
+  else if(variable == "caloHadDeltaRp4") value = object->caloHadDeltaRp4;
->
+  else if(variable == "caloEMDeltaRp5") value = object->caloEMDeltaRp5;
->
+  else if(variable == "caloHadDeltaRp5") value = object->caloHadDeltaRp5;
->
+  else if(variable == "nTracksRp5") value = object->nTracksRp5;
->
+  else if(variable == "nHitsMissingOuter") value = object->nHitsMissingOuter;
->
+  else if(variable == "nHitsMissingInner") value = object->nHitsMissingInner;
->
+  else if(variable == "nHitsMissingMiddle") value = object->nHitsMissingMiddle;
->
+  else if(variable == "depTrkRp5") value = object->depTrkRp5;
->
->
+  //user defined variables
->
+  else if(variable == "d0wrtBS") value = (object->vx-events->at(0).BSx)*object->py/object->pt - (object->vy-events->at(0).BSy)*object->px/object->pt;
->
+  else if(variable == "dZwrtBS") value = object->dZ - events->at(0).BSz;
->
+  else if(variable == "depTrkRp5MinusPt")           value =  (object->depTrkRp5 - object->pt);
->
+  else if(variable == "caloTotDeltaRp5")            value =  (object->caloHadDeltaRp5 + object->caloEMDeltaRp5);
->
+  else if(variable == "caloTotDeltaRp5ByP")         value = ((object->caloHadDeltaRp5 + object->caloEMDeltaRp5)/pMag);
->
+  else if(variable == "caloTotDeltaRp5RhoCorr")     value = getTrkCaloTotRhoCorr(object);
->
+  else if(variable == "caloTotDeltaRp5ByPRhoCorr")  value = getTrkCaloTotRhoCorr(object) / pMag;
->
+  else if(variable == "isIso")                      value = getTrkIsIso(object, tracks.product());
->
+  else if(variable == "isMatchedDeadEcal")          value = getTrkIsMatchedDeadEcal(object);
->
+  else if(variable == "ptErrorByPt")                value = (object->ptError/object->pt);
->
+  else if(variable == "ptError")                    value = object->ptError;
->
+  else if(variable == "ptRes")                      value = getTrkPtRes(object);
->
+  else if (variable == "d0wrtPV"){
->
+    double vx = object->vx - chosenVertex ()->x,
->
+      vy = object->vy - chosenVertex ()->y,
->
+      px = object->px,
->
+      py = object->py,
->
+      pt = object->pt;
->
+    value = (-vx * py + vy * px) / pt;
->
+  }
->
+  else if (variable == "dZwrtPV"){
->
+    double vx = object->vx - chosenVertex ()->x,
->
+      vy = object->vy - chosenVertex ()->y,
->
+      vz = object->vz - chosenVertex ()->z,
->
+      px = object->px,
->
+      py = object->py,
->
+      pz = object->pz,
->
+      pt = object->pt;
->
+    value = vz - (vx * px + vy * py)/pt * (pz/pt);
->
+  }
->
+  else if(variable == "genDeltaRLowest") value = getGenDeltaRLowest(object);
->
->
+  else if(variable == "genMatchedPdgId"){
->
+    int index = getGenMatchedParticleIndex(object);
->
+    if(index == -1) value = 0;
->
+    else value = mcparticles->at(index).id;
->
+  }
->
->
->
+  else if(variable == "genMatchedId"){
->
+    int index = getGenMatchedParticleIndex(object);
->
+    if(index == -1) value = 0;
->
+    else value = getPdgIdBinValue(mcparticles->at(index).id);
->
+  }
->
+  else if(variable == "genMatchedMotherId"){
->
+    int index = getGenMatchedParticleIndex(object);
->
+    if(index == -1) value = 0;
->
+    else value = getPdgIdBinValue(mcparticles->at(index).motherId);
->
+  }
->
+  else if(variable == "genMatchedMotherIdReverse"){
->
+    int index = getGenMatchedParticleIndex(object);
->
+    if(index == -1) value = 24;
->
+    else value = 24 -getPdgIdBinValue(mcparticles->at(index).motherId);
->
+  }
->
+  else if(variable == "genMatchedGrandmotherId"){
->
+    int index = getGenMatchedParticleIndex(object);
->
+    if(index == -1) value = 0;
->
+    else if(fabs(mcparticles->at(index).motherId) == 15){
->
+      int motherIndex = findTauMotherIndex(&mcparticles->at(index));
->
+      if(motherIndex == -1) value = 0;
->
+      else value = getPdgIdBinValue(mcparticles->at(motherIndex).motherId);
->
+    }
->
+    else value = getPdgIdBinValue(mcparticles->at(index).grandMotherId);
->
+  }
->
+  else if(variable == "genMatchedGrandmotherIdReverse"){
->
+    int index = getGenMatchedParticleIndex(object);
->
+    if(index == -1) value = 24;
->
+    else if(fabs(mcparticles->at(index).motherId) == 15){
->
+      int motherIndex = findTauMotherIndex(&mcparticles->at(index));
->
+      if(motherIndex == -1) value = 24;
->
+      else value = 24 - getPdgIdBinValue(mcparticles->at(motherIndex).motherId);
->
+    }
->
+    else value = 24 - getPdgIdBinValue(mcparticles->at(index).grandMotherId);
->
+  }
->
->
->
->
+  else{cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
->
+  value = applyFunction(function, value);
+  return value;
-+
+//!genjet valueLookup
+double
-<
+OSUAnalysis::valueLookup (const BNgenjet* object, string variable, string function){
->
+OSUAnalysis::valueLookup (const BNgenjet* object, string variable, string function, string &stringValue){
+  double value = 0.0;
+  else if(variable == "charge") value = object->charge;
-<
+  else{std::cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
-<
->
+  else{cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
->
+  value = applyFunction(function, value);
+  return value;
-+
+//!mcparticle valueLookup
+double
-<
+OSUAnalysis::valueLookup (const BNmcparticle* object, string variable, string function){
->
+OSUAnalysis::valueLookup (const BNmcparticle* object, string variable, string function, string &stringValue){
+  double value = 0.0;
+  else if(variable == "grandMother11Status") value = object->grandMother11Status;
+  else if(variable == "grandMother11Charge") value = object->grandMother11Charge;
-<
+  else{std::cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
-<
->
+  //user-defined variables
->
+  else if (variable == "d0"){
->
+    double vx = object->vx - chosenVertex ()->x,
->
+      vy = object->vy - chosenVertex ()->y,
->
+      px = object->px,
->
+      py = object->py,
->
+      pt = object->pt;
->
+    value = (-vx * py + vy * px) / pt;
->
+  }
->
+  else if (variable == "dz"){
->
+    double vx = object->vx - chosenVertex ()->x,
->
+      vy = object->vy - chosenVertex ()->y,
->
+      vz = object->vz - chosenVertex ()->z,
->
+      px = object->px,
->
+      py = object->py,
->
+      pz = object->pz,
->
+      pt = object->pt;
->
+    value = vz - (vx * px + vy * py)/pt * (pz/pt);
->
+  }
->
+  else if(variable == "v0"){
->
+    value = sqrt(object->vx*object->vx + object->vy*object->vy);
->
+  }
->
+  else if(variable == "deltaV0"){
->
+    value = sqrt((object->vx-chosenVertex ()->x)*(object->vx-chosenVertex ()->x) + (object->vy-chosenVertex ()->y)*(object->vy-chosenVertex ()->y));
->
+  }
->
+  else if (variable == "deltaVx"){
->
+    value = object->vx - chosenVertex ()->x;
->
+  }
->
+  else if (variable == "deltaVy"){
->
+    value = object->vy - chosenVertex ()->y;
->
+  }
->
+  else if (variable == "deltaVz"){
->
+    value = object->vz - chosenVertex ()->z;
->
+  }
->
->
->
+  else{cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
->
+  value = applyFunction(function, value);
+  return value;
-+
+//!primaryvertex valueLookup
+double
-<
+OSUAnalysis::valueLookup (const BNprimaryvertex* object, string variable, string function){
->
+OSUAnalysis::valueLookup (const BNprimaryvertex* object, string variable, string function, string &stringValue){
+  double value = 0.0;
+  else if(variable == "isGood") value = object->isGood;
-<
+  else{std::cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
-<
->
+  else{cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
->
+  value = applyFunction(function, value);
+  return value;
-+
+//!bxlumi valueLookup
+double
-<
+OSUAnalysis::valueLookup (const BNbxlumi* object, string variable, string function){
->
+OSUAnalysis::valueLookup (const BNbxlumi* object, string variable, string function, string &stringValue){
+  double value = 0.0;
+  else if(variable == "bx_LUMI_now") value = object->bx_LUMI_now;
-<
+  else{std::cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
-<
->
+  else{cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
->
+  value = applyFunction(function, value);
+  return value;
-+
+//!photon valueLookup
+double
-<
+OSUAnalysis::valueLookup (const BNphoton* object, string variable, string function){
->
+OSUAnalysis::valueLookup (const BNphoton* object, string variable, string function, string &stringValue){
+  double value = 0.0;
+  else if(variable == "seedRecoFlag") value = object->seedRecoFlag;
-<
+  else{std::cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
-<
->
->
->
+  else if(variable == "genDeltaRLowest") value = getGenDeltaRLowest(object);
->
->
+  else if(variable == "genMatchedPdgId"){
->
+    int index = getGenMatchedParticleIndex(object);
->
+    if(index == -1) value = 0;
->
+    else value = mcparticles->at(index).id;
->
+  }
->
->
->
->
+  else if(variable == "genMatchedId"){
->
+    int index = getGenMatchedParticleIndex(object);
->
+    if(index == -1) value = 0;
->
+    else value = getPdgIdBinValue(mcparticles->at(index).id);
->
+  }
->
+  else if(variable == "genMatchedMotherId"){
->
+    int index = getGenMatchedParticleIndex(object);
->
+    if(index == -1) value = 0;
->
+    else value = getPdgIdBinValue(mcparticles->at(index).motherId);
->
+  }
->
+  else if(variable == "genMatchedMotherIdReverse"){
->
+    int index = getGenMatchedParticleIndex(object);
->
+    if(index == -1) value = 24;
->
+    else value = 24 -getPdgIdBinValue(mcparticles->at(index).motherId);
->
+  }
->
+  else if(variable == "genMatchedGrandmotherId"){
->
+    int index = getGenMatchedParticleIndex(object);
->
+    if(index == -1) value = 0;
->
+    else if(fabs(mcparticles->at(index).motherId) == 15){
->
+      int motherIndex = findTauMotherIndex(&mcparticles->at(index));
->
+      if(motherIndex == -1) value = 0;
->
+      else value = getPdgIdBinValue(mcparticles->at(motherIndex).motherId);
->
+    }
->
+    else value = getPdgIdBinValue(mcparticles->at(index).grandMotherId);
->
+  }
->
+  else if(variable == "genMatchedGrandmotherIdReverse"){
->
+    int index = getGenMatchedParticleIndex(object);
->
+    if(index == -1) value = 24;
->
+    else if(fabs(mcparticles->at(index).motherId) == 15){
->
+      int motherIndex = findTauMotherIndex(&mcparticles->at(index));
->
+      if(motherIndex == -1) value = 24;
->
+      else value = 24 - getPdgIdBinValue(mcparticles->at(motherIndex).motherId);
->
+    }
->
+    else value = 24 - getPdgIdBinValue(mcparticles->at(index).grandMotherId);
->
+  }
->
->
->
+  else{cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
->
+  value = applyFunction(function, value);
+  return value;
-+
+//!supercluster valueLookup
+double
-<
+OSUAnalysis::valueLookup (const BNsupercluster* object, string variable, string function){
->
+OSUAnalysis::valueLookup (const BNsupercluster* object, string variable, string function, string &stringValue){
+  double value = 0.0;
+  else if(variable == "theta") value = object->theta;
-+
+  else{cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
-+
-+
+  value = applyFunction(function, value);
-+
-+
+  return value;
-+
+}
-+
-+
+//!trigobj valueLookup
-+
+double
-+
+OSUAnalysis::valueLookup (const BNtrigobj* object, string variable, string function, string &stringValue){
-+
-+
+  double value = 0.0;
-+
-+
+  if(variable == "pt") value = object->pt;
-+
+  else if(variable == "eta") value = object->eta;
-+
+  else if(variable == "phi") value = object->phi;
-+
+  else if(variable == "px") value = object->px;
-+
+  else if(variable == "py") value = object->py;
-+
+  else if(variable == "pz") value = object->pz;
-+
+  else if(variable == "et") value = object->et;
-+
+  else if(variable == "energy") value = object->energy;
-+
+  else if(variable == "etTotal") value = object->etTotal;
-+
+  else if(variable == "id") value = object->id;
-+
+  else if(variable == "charge") value = object->charge;
-+
+  else if(variable == "isIsolated") value = object->isIsolated;
-+
+  else if(variable == "isMip") value = object->isMip;
-+
+  else if(variable == "isForward") value = object->isForward;
-+
+  else if(variable == "isRPC") value = object->isRPC;
-+
+  else if(variable == "bx") value = object->bx;
-+
+  else if(variable == "filter") {
-+
+    if ((stringValue = object->filter) == "")
-+
+      stringValue = "none";  // stringValue should only be empty if value is filled
-+
+  }
-+
-+
+  else{cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
-+
-+
+  value = applyFunction(function, value);
-+
-+
+  return value;
-+
+}
-+
-+
+//!muon-muon pair valueLookup
-+
+double
-+
+OSUAnalysis::valueLookup (const BNmuon* object1, const BNmuon* object2, string variable, string function, string &stringValue){
-+
-+
+  double value = 0.0;
-+
-+
+  if(variable == "deltaPhi") value = fabs(deltaPhi(object1->phi,object2->phi));
-+
+  else if(variable == "deltaEta") value = fabs(object1->eta - object2->eta);
-+
+  else if(variable == "deltaR") value = deltaR(object1->eta,object1->phi,object2->eta,object2->phi);
-+
+  else if(variable == "invMass"){
-+
+    TLorentzVector fourVector1(object1->px, object1->py, object1->pz, object1->energy);
-+
+    TLorentzVector fourVector2(object2->px, object2->py, object2->pz, object2->energy);
-+
+    value = (fourVector1 + fourVector2).M();
-+
+  }
-+
+  else if(variable == "pt"){
-+
+    TLorentzVector fourVector1(object1->px, object1->py, object1->pz, object1->energy);
-+
+    TLorentzVector fourVector2(object2->px, object2->py, object2->pz, object2->energy);
-+
+    value = (fourVector1 + fourVector2).Pt();
-+
+  }
-+
+  else if(variable == "threeDAngle")
-+
+    {
-+
+      TVector3 threeVector1(object1->px, object1->py, object1->pz);
-+
+      TVector3 threeVector2(object2->px, object2->py, object2->pz);
-+
+      value = (threeVector1.Angle(threeVector2));
-+
+    }
-+
+  else if(variable == "alpha")
-+
+    {
-+
+      static const double pi = 3.1415926535897932384626433832795028841971693993751058;
-+
+      TVector3 threeVector1(object1->px, object1->py, object1->pz);
-+
+      TVector3 threeVector2(object2->px, object2->py, object2->pz);
-+
+      value = (pi-threeVector1.Angle(threeVector2));
-+
+    }
-+
+  else if(variable == "deltaCorrectedD0Vertex") value = object1->correctedD0Vertex - object2->correctedD0Vertex;
-+
+  else if(variable == "deltaAbsCorrectedD0Vertex") value = fabs(object1->correctedD0Vertex) - fabs(object2->correctedD0Vertex);
-+
+  else if(variable == "d0Sign"){
-+
+    double d0Sign = (object1->correctedD0Vertex*object2->correctedD0Vertex)/fabs(object1->correctedD0Vertex*object2->correctedD0Vertex);
-+
+    if(d0Sign < 0) value = -0.5;
-+
+    else if (d0Sign > 0) value = 0.5;
-+
+    else value = -999;
-+
+  }
-+
+  else if(variable == "chargeProduct"){
-+
+    value = object1->charge*object2->charge;
-+
+  }
-+
+  else if(variable == "muon1CorrectedD0Vertex"){
-+
+    value = object1->correctedD0Vertex;
-+
+  }
-+
+  else if(variable == "muon2CorrectedD0Vertex"){
-+
+    value = object2->correctedD0Vertex;
-+
+  }
-+
+  else if(variable == "muon1timeAtIpInOut"){
-+
+    value = object1->timeAtIpInOut;
-+
+  }
-+
+  else if(variable == "muon2timeAtIpInOut"){
-+
+    value = object2->timeAtIpInOut;
-+
+  }
-+
+  else if(variable == "muon1correctedD0")
-+
+    {
-+
+      value = object1->correctedD0;
-+
+    }
-+
+  else if(variable == "muon2correctedD0")
-+
+    {
-+
+      value = object2->correctedD0;
-+
+    }
-+
-+
+  else{cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
-+
-+
+  value = applyFunction(function, value);
-+
-+
+  return value;
-+
+}
-+
-+
+//!electron-electron pair valueLookup
-+
+double
-+
+OSUAnalysis::valueLookup (const BNelectron* object1, const BNelectron* object2, string variable, string function, string &stringValue){
-+
-+
+  double value = 0.0;
-+
-+
+  if(variable == "deltaPhi") value = fabs(deltaPhi(object1->phi,object2->phi));
-+
+  else if(variable == "deltaEta") value = fabs(object1->eta - object2->eta);
-+
+  else if(variable == "deltaR") value = deltaR(object1->eta,object1->phi,object2->eta,object2->phi);
-+
+  else if(variable == "invMass"){
-+
+    TLorentzVector fourVector1(object1->px, object1->py, object1->pz, object1->energy);
-+
+    TLorentzVector fourVector2(object2->px, object2->py, object2->pz, object2->energy);
-+
+    value = (fourVector1 + fourVector2).M();
-+
+  }
-+
+  else if(variable == "pt"){
-+
+    TLorentzVector fourVector1(object1->px, object1->py, object1->pz, object1->energy);
-+
+    TLorentzVector fourVector2(object2->px, object2->py, object2->pz, object2->energy);
-+
+    value = (fourVector1 + fourVector2).Pt();
-+
+  }
-+
+  else if(variable == "threeDAngle")
-+
+    {
-+
+      TVector3 threeVector1(object1->px, object1->py, object1->pz);
-+
+      TVector3 threeVector2(object2->px, object2->py, object2->pz);
-+
+      value = (threeVector1.Angle(threeVector2));
-+
+    }
-+
+  else if(variable == "deltaCorrectedD0Vertex") value = object1->correctedD0Vertex - object2->correctedD0Vertex;
-+
+  else if(variable == "deltaAbsCorrectedD0Vertex") value = fabs(object1->correctedD0Vertex) - fabs(object2->correctedD0Vertex);
-+
+  else if(variable == "d0Sign"){
-+
+    double d0Sign = (object1->correctedD0Vertex*object2->correctedD0Vertex)/fabs(object1->correctedD0Vertex*object2->correctedD0Vertex);
-+
+    if(d0Sign < 0) value = -0.5;
-+
+    else if (d0Sign > 0) value = 0.5;
-+
+    else value = -999;
-+
+  }
-+
+  else if(variable == "chargeProduct"){
-+
+    value = object1->charge*object2->charge;
-+
+  }
-+
+  else if(variable == "electron1CorrectedD0Vertex"){
-+
+    value = object1->correctedD0Vertex;
-+
+  }
-+
+  else if(variable == "electron2CorrectedD0Vertex"){
-+
+    value = object2->correctedD0Vertex;
-+
+  }
-+
+  else if(variable == "electron1CorrectedD0"){
-+
+    value = object1->correctedD0;
-+
+  }
-+
+  else if(variable == "electron2CorrectedD0"){
-+
+    value = object2->correctedD0;
-+
+  }
-+
-+
+  else{cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
-+
-+
+  value = applyFunction(function, value);
-+
-+
+  return value;
-+
+}
-+
+//!electron-muon pair valueLookup
-+
+double
-+
+OSUAnalysis::valueLookup (const BNelectron* object1, const BNmuon* object2, string variable, string function, string &stringValue){
-+
-+
+  double value = 0.0;
-+
-+
+  if(variable == "deltaPhi") value = fabs(deltaPhi(object1->phi,object2->phi));
-+
+  else if(variable == "deltaEta") value = fabs(object1->eta - object2->eta);
-+
+  else if(variable == "deltaR") value = deltaR(object1->eta,object1->phi,object2->eta,object2->phi);
-+
+  else if(variable == "invMass"){
-+
+    TLorentzVector fourVector1(object1->px, object1->py, object1->pz, object1->energy);
-+
+    TLorentzVector fourVector2(object2->px, object2->py, object2->pz, object2->energy);
-+
+    value = (fourVector1 + fourVector2).M();
-+
+  }
-+
+  else if(variable == "pt"){
-+
+    TLorentzVector fourVector1(object1->px, object1->py, object1->pz, object1->energy);
-+
+    TLorentzVector fourVector2(object2->px, object2->py, object2->pz, object2->energy);
-+
+    value = (fourVector1 + fourVector2).Pt();
-+
+  }
-+
+  else if(variable == "threeDAngle")
-+
+    {
-+
+      TVector3 threeVector1(object1->px, object1->py, object1->pz);
-+
+      TVector3 threeVector2(object2->px, object2->py, object2->pz);
-+
+      value = (threeVector1.Angle(threeVector2));
-+
+    }
-+
+  else if(variable == "deltaCorrectedD0Vertex") value = object1->correctedD0Vertex - object2->correctedD0Vertex;
-+
+  else if(variable == "deltaAbsCorrectedD0Vertex") value = fabs(object1->correctedD0Vertex) - fabs(object2->correctedD0Vertex);
-+
+  else if(variable == "d0Sign"){
-+
+    double d0Sign = (object1->correctedD0Vertex*object2->correctedD0Vertex)/fabs(object1->correctedD0Vertex*object2->correctedD0Vertex);
-+
+    if(d0Sign < 0) value = -0.5;
-+
+    else if (d0Sign > 0) value = 0.5;
-+
+    else value = -999;
-+
+  }
-+
+  else if(variable == "chargeProduct"){
-+
+    value = object1->charge*object2->charge;
-+
+  }
-+
+  else if(variable == "electronCorrectedD0Vertex"){
-+
+    value = object1->correctedD0Vertex;
-+
+  }
-+
+  else if(variable == "muonCorrectedD0Vertex"){
-+
+    value = object2->correctedD0Vertex;
-+
+  }
-+
+  else if(variable == "electronCorrectedD0"){
-+
+    value = object1->correctedD0;
-+
+  }
-+
+  else if(variable == "muonCorrectedD0"){
-+
+    value = object2->correctedD0;
-+
+  }
-+
+  else if(variable == "electronDetIso"){
-+
+    value = (object1->trackIso) / object1->pt;
-+
+  }
-+
+  else if(variable == "muonDetIso"){
-+
+    value = (object2->trackIsoDR03) / object2->pt;
-+
+  }
-+
+  else if(variable == "electronRelPFrhoIso"){
-+
+    value = ( object1->chargedHadronIsoDR03 + max(0.0, object1->neutralHadronIsoDR03 + object1->photonIsoDR03 - object1->AEffDr03*object1->rhoPrime) ) / object1->pt;
-+
+  }
-+
+  else if(variable == "muonRelPFdBetaIso"){
-+
+    value = (object2->pfIsoR04SumChargedHadronPt + max(0.0, object2->pfIsoR04SumNeutralHadronEt + object2->pfIsoR04SumPhotonEt - 0.5*object2->pfIsoR04SumPUPt)) / object2->pt;
-+
+  }
-+
+  else{cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
-+
+  value = applyFunction(function, value);
-+
-+
+  return value;
-+
+}
-+
-+
+//!electron-jet pair valueLookup
-+
+double
-+
+OSUAnalysis::valueLookup (const BNelectron* object1, const BNjet* object2, string variable, string function, string &stringValue){
-+
-+
+  double value = 0.0;
-+
-+
+  if(variable == "deltaPhi") value = fabs(deltaPhi(object1->phi,object2->phi));
-+
+  else if(variable == "deltaEta") value = fabs(object1->eta - object2->eta);
-+
+  else if(variable == "jetEta") value = object2->eta;
-+
+  else if(variable == "jetPhi") value = object2->phi;
-+
+  else if(variable == "electronEta") value = object1->eta;
-+
+  else if(variable == "electronPhi") value = object1->phi;
-+
+  else if(variable == "deltaR") value = deltaR(object1->eta,object1->phi,object2->eta,object2->phi);
-+
+  else if(variable == "invMass"){
-+
+    TLorentzVector fourVector1(object1->px, object1->py, object1->pz, object1->energy);
-+
+    TLorentzVector fourVector2(object2->px, object2->py, object2->pz, object2->energy);
-+
+    value = (fourVector1 + fourVector2).M();
-+
+  }
-+
+  else if(variable == "pt"){
-+
+    TLorentzVector fourVector1(object1->px, object1->py, object1->pz, object1->energy);
-+
+    TLorentzVector fourVector2(object2->px, object2->py, object2->pz, object2->energy);
-+
+    value = (fourVector1 + fourVector2).Pt();
-+
+  }
-+
+  else if(variable == "threeDAngle")
-+
+    {
-+
+      TVector3 threeVector1(object1->px, object1->py, object1->pz);
-+
+      TVector3 threeVector2(object2->px, object2->py, object2->pz);
-+
+      value = (threeVector1.Angle(threeVector2));
-+
+    }
-+
+  else if(variable == "chargeProduct"){
-+
+    value = object1->charge*object2->charge;
-+
+  }
-+
-+
+  else{cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
-+
+  value = applyFunction(function, value);
-+
-+
+  return value;
-+
+}
-+
-+
+//!muon-jet pair valueLookup
-+
+double
-+
+OSUAnalysis::valueLookup (const BNmuon* object1, const BNjet* object2, string variable, string function, string &stringValue){
-+
-+
+  double value = 0.0;
-+
-+
+  if(variable == "deltaPhi") value = fabs(deltaPhi(object1->phi,object2->phi));
-+
+  else if(variable == "jetEta") value = object2->eta;
-+
+  else if(variable == "jetPhi") value = object2->phi;
-+
+  else if(variable == "muonEta") value = object1->eta;
-+
+  else if(variable == "muonPhi") value = object1->phi;
-+
+  else if(variable == "deltaEta") value = fabs(object1->eta - object2->eta);
-+
+  else if(variable == "deltaR") value = deltaR(object1->eta,object1->phi,object2->eta,object2->phi);
-+
+  else if(variable == "invMass"){
-+
+    TLorentzVector fourVector1(object1->px, object1->py, object1->pz, object1->energy);
-+
+    TLorentzVector fourVector2(object2->px, object2->py, object2->pz, object2->energy);
-+
+    value = (fourVector1 + fourVector2).M();
-+
+  }
-+
+  else if(variable == "pt"){
-+
+    TLorentzVector fourVector1(object1->px, object1->py, object1->pz, object1->energy);
-+
+    TLorentzVector fourVector2(object2->px, object2->py, object2->pz, object2->energy);
-+
+    value = (fourVector1 + fourVector2).Pt();
-+
+  }
-+
+  else if(variable == "threeDAngle")
-+
+    {
-+
+      TVector3 threeVector1(object1->px, object1->py, object1->pz);
-+
+      TVector3 threeVector2(object2->px, object2->py, object2->pz);
-+
+      value = (threeVector1.Angle(threeVector2));
-+
+    }
-+
+  else if(variable == "chargeProduct"){
-+
+    value = object1->charge*object2->charge;
-+
+  }
-+
-+
+  else{cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
-+
+  value = applyFunction(function, value);
-+
-+
+  return value;
-+
+}
-+
-+
+//!jet-jet pair valueLookup
-+
+double
-+
+OSUAnalysis::valueLookup (const BNjet* object1, const BNjet* object2, string variable, string function, string &stringValue){
-+
-+
+  double value = 0.0;
-+
-+
+  if(variable == "deltaPhi") value = fabs(deltaPhi(object1->phi,object2->phi));
-+
+  else if(variable == "deltaEta") value = fabs(object1->eta - object2->eta);
-+
+  else if(variable == "absDeltaPt") value = fabs(object1->pt - object2->pt);
-+
+  else if(variable == "deltaR") value = deltaR(object1->eta,object1->phi,object2->eta,object2->phi);
-+
+  else if(variable == "invMass"){
-+
+    TLorentzVector fourVector1(object1->px, object1->py, object1->pz, object1->energy);
-+
+    TLorentzVector fourVector2(object2->px, object2->py, object2->pz, object2->energy);
-+
+    value = (fourVector1 + fourVector2).M();
-+
+  }
-+
+  else if(variable == "pt"){
-+
+    TLorentzVector fourVector1(object1->px, object1->py, object1->pz, object1->energy);
-+
+    TLorentzVector fourVector2(object2->px, object2->py, object2->pz, object2->energy);
-+
+    value = (fourVector1 + fourVector2).Pt();
-+
+  }
-+
+  else if(variable == "threeDAngle")
-+
+    {
-+
+      TVector3 threeVector1(object1->px, object1->py, object1->pz);
-+
+      TVector3 threeVector2(object2->px, object2->py, object2->pz);
-+
+      value = (threeVector1.Angle(threeVector2));
-+
+    }
-+
+  else if(variable == "chargeProduct"){
-+
+    value = object1->charge*object2->charge;
-+
+  }
-+
-+
+  else{cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
-+
+  value = applyFunction(function, value);
-+
-+
+  return value;
-+
+}
-+
+//!electron-track pair valueLookup
-+
+double
-+
+OSUAnalysis::valueLookup (const BNelectron* object1, const BNtrack* object2, string variable, string function, string &stringValue){
-+
+  double electronMass = 0.000511;
-+
+  double value = 0.0;
-+
+  TLorentzVector fourVector1(0, 0, 0, 0);
-+
+  TLorentzVector fourVector2(0, 0, 0, 0);
-+
+  if(variable == "deltaPhi") value = fabs(deltaPhi(object1->phi,object2->phi));
-+
+  else if(variable == "deltaEta") value = fabs(object1->eta - object2->eta);
-+
+  else if(variable == "deltaR") value = deltaR(object1->eta,object1->phi,object2->eta,object2->phi);
-+
+  else if(variable == "invMass"){
-+
+    fourVector1.SetPtEtaPhiM(object1->pt, object1->eta, object1->phi, electronMass);
-+
+    fourVector2.SetPtEtaPhiM(object2->pt, object2->eta, object2->phi, electronMass );
-+
-+
+    value = (fourVector1 + fourVector2).M();
-+
+  }
-+
+  else if(variable == "chargeProduct"){
-+
+    value = object1->charge*object2->charge;
-+
+  }
+  else{std::cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
-–
+  value = applyFunction(function, value);
-+
+  return value;
-+
-+
+}
-+
-+
-+
+//!muon-track pair valueLookup
-+
+double
-+
+OSUAnalysis::valueLookup (const BNmuon* object1, const BNtrack* object2, string variable, string function, string &stringValue){
-+
+  double pionMass = 0.140;
-+
+  double muonMass = 0.106;
-+
+  double value = 0.0;
-+
+  TLorentzVector fourVector1(0, 0, 0, 0);
-+
+  TLorentzVector fourVector2(0, 0, 0, 0);
-+
+  if(variable == "deltaPhi") value = fabs(deltaPhi(object1->phi,object2->phi));
-+
+  else if(variable == "deltaEta") value = fabs(object1->eta - object2->eta);
-+
+  else if(variable == "deltaR") value = deltaR(object1->eta,object1->phi,object2->eta,object2->phi);
-+
+  else if(variable == "invMass"){
-+
+    fourVector1.SetPtEtaPhiM(object1->pt, object1->eta, object1->phi, muonMass);
-+
+    fourVector2.SetPtEtaPhiM(object2->pt, object2->eta, object2->phi, pionMass );
-+
-+
+    value = (fourVector1 + fourVector2).M();
-+
+  }
-+
+  else if(variable == "chargeProduct"){
-+
+    value = object1->charge*object2->charge;
-+
+  }
-+
+  else{std::cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
-+
+  value = applyFunction(function, value);
+  return value;
-+
+//!tau-tau pair valueLookup
-+
+double
-+
+OSUAnalysis::valueLookup (const BNtau* object1, const BNtau* object2, string variable, string function, string &stringValue){
-+
+  double value = 0.0;
-+
+  if(variable == "deltaPhi") value = fabs(deltaPhi(object1->phi,object2->phi));
-+
+  else if(variable == "deltaEta") value = fabs(object1->eta - object2->eta);
-+
+  else if(variable == "deltaR") value = deltaR(object1->eta,object1->phi,object2->eta,object2->phi);
-+
+  else if(variable == "invMass"){
-+
+    TLorentzVector fourVector1(object1->px, object1->py, object1->pz, object1->energy);
-+
+    TLorentzVector fourVector2(object2->px, object2->py, object2->pz, object2->energy);
-+
+    value = (fourVector1 + fourVector2).M();
-+
+  }
-+
-+
+  else if(variable == "chargeProduct"){
-+
+    value = object1->charge*object2->charge;
-+
+  }
-+
-+
+  else{std::cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
-+
+  value = applyFunction(function, value);
-+
+  return value;
-+
+}
-+
-+
+//!muon-tau pair valueLookup
-+
+double
-+
+OSUAnalysis::valueLookup (const BNmuon* object1, const BNtau* object2, string variable, string function, string &stringValue){
-+
+  double value = 0.0;
-+
+  if(variable == "deltaPhi") value = fabs(deltaPhi(object1->phi,object2->phi));
-+
+  else if(variable == "deltaEta") value = fabs(object1->eta - object2->eta);
-+
+  else if(variable == "deltaR") value = deltaR(object1->eta,object1->phi,object2->eta,object2->phi);
-+
+  else if(variable == "invMass"){
-+
+    TLorentzVector fourVector1(object1->px, object1->py, object1->pz, object1->energy);
-+
+    TLorentzVector fourVector2(object2->px, object2->py, object2->pz, object2->energy);
-+
+    value = (fourVector1 + fourVector2).M();
-+
+  }
-+
-+
+  else if(variable == "chargeProduct"){
-+
+    value = object1->charge*object2->charge;
-+
+  }
-+
-+
+  else{std::cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
-+
+  value = applyFunction(function, value);
-+
+  return value;
-+
+}
-+
-+
+//!tau-track pair valueLookup
-+
+double
-+
+OSUAnalysis::valueLookup (const BNtau* object1, const BNtrack* object2, string variable, string function, string &stringValue){
-+
+  double value = 0.0;
-+
+  if(variable == "deltaPhi") value = fabs(deltaPhi(object1->phi,object2->phi));
-+
+  else if(variable == "deltaR") value = deltaR(object1->eta,object1->phi,object2->eta,object2->phi);
-+
+  else if(variable == "chargeProduct"){
-+
+    value = object1->charge*object2->charge;
-+
+  }
-+
-+
+  else{std::cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999;}
-+
+  value = applyFunction(function, value);
-+
+  return value;
-+
+}
-+
-+
-+
+//!track-event pair valueLookup
-+
+double
-+
+OSUAnalysis::valueLookup (const BNtrack* object1, const BNevent* object2, string variable, string function, string &stringValue){
-+
-+
+  double value = 0.0;
-+
+  double pMag = sqrt(object1->pt * object1->pt +
-+
+                     object1->pz * object1->pz);
-+
-+
+  if      (variable == "numPV")                      value = object2->numPV;
-+
+  else if (variable == "caloTotDeltaRp5")            value =  (object1->caloHadDeltaRp5 + object1->caloEMDeltaRp5);
-+
+  else if (variable == "caloTotDeltaRp5ByP")         value = ((object1->caloHadDeltaRp5 + object1->caloEMDeltaRp5)/pMag);
-+
+  else if (variable == "caloTotDeltaRp5_RhoCorr")    value = getTrkCaloTotRhoCorr(object1);
-+
+  else if (variable == "caloTotDeltaRp5ByP_RhoCorr") value = getTrkCaloTotRhoCorr(object1) / pMag;
-+
-+
+  else { cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999; }
-+
-+
+  value = applyFunction(function, value);
-+
-+
+  return value;
-+
-+
+}
-+
-+
+//!electron-trigobj pair valueLookup
-+
+double
-+
+OSUAnalysis::valueLookup (const BNelectron* object1, const BNtrigobj* object2, string variable, string function, string &stringValue){
-+
-+
+  double value = 0.0;
-+
-+
+  if (variable == "deltaR") value = deltaR(object1->eta,object1->phi,object2->eta,object2->phi);
-+
+  else if (variable == "match"){
-+
+    if (deltaR(object1->eta,object1->phi,object2->eta,object2->phi) < 0.2 && abs(object2->id) == 11)
-+
+      stringValue = object2->filter;
-+
+    else
-+
+      stringValue = "none";
-+
+  }
-+
-+
+  else { cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999; }
-+
-+
+  value = applyFunction(function, value);
-+
-+
+  return value;
-+
-+
+}
-+
-+
+//!muon-trigobj pair valueLookup
-+
+double
-+
+OSUAnalysis::valueLookup (const BNmuon* object1, const BNtrigobj* object2, string variable, string function, string &stringValue){
-+
-+
+  double value = 0.0;
-+
-+
+  if (variable == "deltaR") value = deltaR(object1->eta,object1->phi,object2->eta,object2->phi);
-+
-+
+  else { cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999; }
-+
-+
+  value = applyFunction(function, value);
-+
-+
+  return value;
-+
-+
+}
-+
-+
+//!stop valueLookup
-+
+double
-+
+OSUAnalysis::valueLookup (const BNstop* object, string variable, string function, string &stringValue){
-+
-+
-+
+  double value = 0.0;
-+
-+
+  if(variable == "ctau") value = object->ctau;
-+
-+
+  else if (variable == "d0"){
-+
+    double vx = object->vx - chosenVertex ()->x,
-+
+      vy = object->vy - chosenVertex ()->y,
-+
+      px = object->px,
-+
+      py = object->py,
-+
+      pt = object->pt;
-+
+    value = (-vx * py + vy * px) / pt;
-+
+  }
-+
-+
+  else if (variable == "dz"){
-+
+    double vx = object->vx - chosenVertex ()->x,
-+
+      vy = object->vy - chosenVertex ()->y,
-+
+      vz = object->vz - chosenVertex ()->z,
-+
+      px = object->px,
-+
+      py = object->py,
-+
+      pz = object->pz,
-+
+      pt = object->pt;
-+
+    value = vz - (vx * px + vy * py)/pt * (pz/pt);
-+
+  }
-+
-+
+  else if (variable == "minD0"){
-+
+    double minD0=999;
-+
+    for(BNprimaryvertexCollection::const_iterator vertex = primaryvertexs->begin (); vertex != primaryvertexs->end (); vertex++){
-+
+      double vx = object->vx - vertex->x,
-+
+        vy = object->vy - vertex->y,
-+
+        px = object->px,
-+
+        py = object->py,
-+
+        pt = object->pt;
-+
+      value = (-vx * py + vy * px) / pt;
-+
+      if(abs(value) < abs(minD0)) minD0 = value;
-+
+    }
-+
+    value = minD0;
-+
+  }
-+
+  else if (variable == "minDz"){
-+
+    double minDz=999;
-+
+    for(BNprimaryvertexCollection::const_iterator vertex = primaryvertexs->begin (); vertex != primaryvertexs->end (); vertex++){
-+
+      double vx = object->vx - vertex->x,
-+
+        vy = object->vy - vertex->y,
-+
+        vz = object->vz - vertex->z,
-+
+        px = object->px,
-+
+        py = object->py,
-+
+        pz = object->pz,
-+
+        pt = object->pt;
-+
+      value = vz - (vx * px + vy * py)/pt * (pz/pt);
-+
+      if(abs(value) < abs(minDz)) minDz = value;
-+
+    }
-+
+    value = minDz;
-+
+  }
-+
+  else if(variable == "distToVertex"){
-+
+    value = sqrt((object->vx-chosenVertex()->x)*(object->vx-chosenVertex()->x) + \
-+
+                 (object->vy-chosenVertex()->y)*(object->vy-chosenVertex()->y) + \
-+
+                 (object->vz-chosenVertex()->z)*(object->vz-chosenVertex()->z));
-+
+  }
-+
+  else if (variable == "minDistToVertex"){
-+
+    double minDistToVertex=999;
-+
+    for(BNprimaryvertexCollection::const_iterator vertex = primaryvertexs->begin (); vertex != primaryvertexs->end (); vertex++){
-+
+      value = sqrt((object->vx-vertex->x)*(object->vx-vertex->x) + \
-+
+                   (object->vy-vertex->y)*(object->vy-vertex->y) + \
-+
+                   (object->vz-vertex->z)*(object->vz-vertex->z));
-+
-+
+      if(abs(value) < abs(minDistToVertex)) minDistToVertex = value;
-+
+    }
-+
+    value = minDistToVertex;
-+
+  }
-+
+  else if (variable == "distToVertexDifference"){
-+
+    double minDistToVertex=999;
-+
+    for(BNprimaryvertexCollection::const_iterator vertex = primaryvertexs->begin (); vertex != primaryvertexs->end (); vertex++){
-+
+      value = sqrt((object->vx-vertex->x)*(object->vx-vertex->x) + \
-+
+                   (object->vy-vertex->y)*(object->vy-vertex->y) + \
-+
+                   (object->vz-vertex->z)*(object->vz-vertex->z));
-+
-+
+      if(abs(value) < abs(minDistToVertex)) minDistToVertex = value;
-+
+    }
-+
+    double distToChosenVertex = sqrt((object->vx-chosenVertex()->x)*(object->vx-chosenVertex()->x) + \
-+
+                                     (object->vy-chosenVertex()->y)*(object->vy-chosenVertex()->y) + \
-+
+                                     (object->vz-chosenVertex()->z)*(object->vz-chosenVertex()->z));
-+
-+
+    value = distToChosenVertex - minDistToVertex;
-+
+  }
-+
-+
+  else if (variable == "closestVertexRank"){
-+
+    double minDistToVertex=999;
-+
+    int vertex_rank = 0;
-+
+    for(BNprimaryvertexCollection::const_iterator vertex = primaryvertexs->begin (); vertex != primaryvertexs->end (); vertex++){
-+
+      vertex_rank++;
-+
+      int dist = sqrt((object->vx-vertex->x)*(object->vx-vertex->x) + \
-+
+                      (object->vy-vertex->y)*(object->vy-vertex->y) + \
-+
+                      (object->vz-vertex->z)*(object->vz-vertex->z));
-+
-+
+      if(abs(dist) < abs(minDistToVertex)){
-+
+        value = vertex_rank;
-+
+        minDistToVertex = dist;
-+
+      }
-+
+    }
-+
+  }
-+
-+
-+
-+
-+
+  else { cout << "WARNING: invalid variable '" << variable << "'\n"; value = -999; }
-+
-+
+  value = applyFunction(function, value);
-+
-+
+  return value;
-+
-+
+}
-+
-+
-+
-+
-+
+// Calculate the number of tracks in cone of DeltaR<0.5 around track1.
-+
+// Return true iff no other tracks are found in this cone.
-+
+int
-+
+OSUAnalysis::getTrkIsIso (const BNtrack* track1, const BNtrackCollection* trackColl){
-+
+  for(BNtrackCollection::const_iterator track2 = trackColl->begin(); track2 !=trackColl->end(); track2++){
-+
+    if(track1->eta == track2->eta && track1->phi == track2->phi) continue; // Do not compare the track to itself.
-+
+    double deltaRtrk = deltaR(track1->eta, track1->phi, track2->eta, track2->phi);
-+
+    if(deltaRtrk < 0.5) return 0;
-+
+  }
-+
+  return 1;
-+
-+
+}
-+
-+
-+
+double
-+
+OSUAnalysis::getTrkPtRes (const BNtrack* track1){
-+
-+
+  double ptTrue = getTrkPtTrue(track1, mcparticles.product());
-+
+  double PtRes = (track1->pt - ptTrue) / ptTrue;
-+
-+
+  return PtRes;
-+
-+
+}
-+
-+
-+
+double
-+
+OSUAnalysis::getTrkPtTrue (const BNtrack* track1, const BNmcparticleCollection* genPartColl){
-+
+  double value = -99;
-+
+  double genDeltaRLowest = 999;
-+
-+
+  for (BNmcparticleCollection::const_iterator genPart = genPartColl->begin(); genPart !=genPartColl->end(); genPart++){
-+
+    double genDeltaRtemp = deltaR(genPart->eta, genPart->phi,track1->eta, track1->phi);
-+
+    if (genDeltaRtemp < genDeltaRLowest) {
-+
+      genDeltaRLowest = genDeltaRtemp;
-+
+      if (genDeltaRLowest < 0.05) {   // Only consider it truth-matched if DeltaR<0.15.
-+
+        double ptTrue = genPart->pt;
-+
+        value = ptTrue;
-+
+      }
-+
+    }
-+
+  }
-+
-+
+  return value;
-+
-+
+}
-+
-+
+double
-+
+OSUAnalysis::getTrkCaloTotRhoCorr(const BNtrack* track) {
-+
+  // Return the pile-up (rho) corrected isolation energy, i.e., the total calorimeter energy around the candidate track.
-+
+  if (!useTrackCaloRhoCorr_) return -99;
-+
+  // if (!rhokt6CaloJetsHandle_) {
-+
+  //   cout << "ERROR [getTrkCaloTotRhoCorr]:  The collection rhokt6CaloJetsHandle is not available!" << endl;
-+
+  //   return -99;
-+
+  // }
-+
+  double radDeltaRCone = 0.5;
-+
+  double rhoCorr_kt6CaloJets = *rhokt6CaloJetsHandle_ * TMath::Pi() * pow(radDeltaRCone, 2);  // Define effective area as pi*r^2, where r is radius of DeltaR cone.
-+
+  double rawCaloTot = track->caloHadDeltaRp5 + track->caloEMDeltaRp5;
-+
+  double caloTotRhoCorrCalo = TMath::Max(0., rawCaloTot - rhoCorr_kt6CaloJets);
-+
+  return caloTotRhoCorrCalo;
-+
-+
+}
-+
-+
-+
-+
-+
+//creates a map of the dead Ecal channels in the barrel and endcap
-+
+//to see how the map of dead Ecal channels is created look at function getChannelStatusMaps() here:
-+
+//http://cmssw.cvs.cern.ch/cgi-bin/cmssw.cgi/UserCode/jbrinson/DisappTrk/OSUT3Analysis/AnaTools/src/OSUAnalysis.cc?revision=1.88&view=markup
-+
+void
-+
+OSUAnalysis::WriteDeadEcal (){
-+
+  double etaEcal, phiEcal;
-+
+  ifstream DeadEcalFile(deadEcalFile_);
-+
+  if(!DeadEcalFile) {
-+
+    cout << "Error: DeadEcalFile has not been found." << endl;
-+
+    return;
-+
+  }
-+
+  if(DeadEcalVec.size()!= 0){
-+
+    cout << "Error: DeadEcalVec has a nonzero size" << endl;
-+
+    return;
-+
+  }
-+
+  while(!DeadEcalFile.eof())
-+
+    {
-+
+      DeadEcalFile >> etaEcal >> phiEcal;
-+
+      DeadEcal newChan;
-+
+      newChan.etaEcal = etaEcal;
-+
+      newChan.phiEcal = phiEcal;
-+
+      DeadEcalVec.push_back(newChan);
-+
+    }
-+
+  if(DeadEcalVec.size() == 0) cout << "Warning: No dead Ecal channels have been found." << endl;
-+
+}
-+
-+
+//if a track is found within dR<0.05 of a dead Ecal channel value = 1, otherwise value = 0
-+
+int
-+
+OSUAnalysis::getTrkIsMatchedDeadEcal (const BNtrack* track1){
-+
+  double deltaRLowest = 999;
-+
+  int value = 0;
-+
+  if (DeadEcalVec.size() == 0) WriteDeadEcal();
-+
+  for(vector<DeadEcal>::const_iterator ecal = DeadEcalVec.begin(); ecal != DeadEcalVec.end(); ++ecal){
-+
+    double eta = ecal->etaEcal;
-+
+    double phi = ecal->phiEcal;
-+
+    double deltaRtemp = deltaR(eta, phi, track1->eta, track1->phi);
-+
+    if(deltaRtemp < deltaRLowest) deltaRLowest = deltaRtemp;
-+
+  }
-+
+  if (deltaRLowest<0.05) {value = 1;}
-+
+  else {value = 0;}
-+
+  return value;
-+
+}
-+
-+
+// Returns the smallest DeltaR between the object and any generated true particle in the event.
-+
+template <class InputObject>
-+
+double OSUAnalysis::getGenDeltaRLowest(InputObject object){
-+
+  double genDeltaRLowest = 999.;
-+
+  for(BNmcparticleCollection::const_iterator mcparticle = mcparticles->begin (); mcparticle != mcparticles->end (); mcparticle++){
-+
+    double deltaRtemp = deltaR(mcparticle->eta, mcparticle->phi, object->eta, object->phi);
-+
+    if (deltaRtemp < genDeltaRLowest) genDeltaRLowest = deltaRtemp;
-+
+  }
-+
+  return genDeltaRLowest;
-+
+}
+double
+OSUAnalysis::applyFunction(string function, double value){
-<
+  if(function == "abs") value = abs(value);
->
+  if(function == "abs") value = fabs(value);
->
+  else if(function == "fabs") value = fabs(value);
->
+  else if(function == "log10") value = log10(value);
->
+  else if(function == "log") value = log10(value);
-+
+  else if(function == "") value = value;
-+
+  else{cout << "WARNING: invalid function '" << function << "'\n";}
+  return value;
-<
+template <class InputCollection>
->
+template <class InputCollection>
+void OSUAnalysis::setObjectFlags(cut &currentCut, uint currentCutIndex, flagMap &individualFlags, flagMap &cumulativeFlags, InputCollection inputCollection, string inputType){
-+
+  if (currentCut.inputCollection.find("pair")!=string::npos)  {
-+
+    string obj1, obj2;
-+
+    getTwoObjs(currentCut.inputCollection, obj1, obj2);
-+
+    if (inputType==obj1 ||
-+
+        inputType==obj2) {
-+
+      // Do not add a cut to individualFlags or cumulativeFlags, if the cut is on a paired collection,
-+
+      // and the inputType is a member of the pair.
-+
+      // The cut will instead be applied when the setObjectFlags() is called for the paired collection.
-+
+      // For example, if currentCut.inputCollection==electron-muon pairs,
-+
+      // then the flags should not be set here when inputType==muons or inputType==electrons.
-+
+      return;
-+
+    }
-+
+  }
+  for (uint object = 0; object != inputCollection->size(); object++){
-<
->
+    bool decision = true;//object passes if this cut doesn't cut on that type of object
-–
-–
+    if(currentCut.inputCollection == inputType){
-–
-–
+      double value = valueLookup(&inputCollection->at(object), currentCut.variable, currentCut.function);
-<
+      decision = evaluateComparison(value,currentCut.comparativeOperator,currentCut.cutValue);
->
+    if(currentCut.inputCollection == inputType){
->
->
+      vector<bool> subcutDecisions;
->
+      for( int subcutIndex = 0; subcutIndex != currentCut.numSubcuts; subcutIndex++){
->
+        string stringValue = "";
->
+        double value = valueLookup(&inputCollection->at(object), currentCut.variables.at(subcutIndex), currentCut.functions.at(subcutIndex), stringValue);
->
+        if (stringValue == "") subcutDecisions.push_back(evaluateComparison(value,currentCut.comparativeOperators.at(subcutIndex),currentCut.cutValues.at(subcutIndex)));
->
+        else subcutDecisions.push_back(evaluateComparison(stringValue,currentCut.comparativeOperators.at(subcutIndex),currentCut.cutStringValues.at(subcutIndex)));
->
->
+      }
->
+      if(currentCut.numSubcuts == 1) decision = subcutDecisions.at(0);
->
+      else{
->
+        bool tempDecision = true;
->
+        for( int subcutIndex = 0;subcutIndex != currentCut.numSubcuts-1; subcutIndex++){
->
+          if(currentCut.logicalOperators.at(subcutIndex) == "&" || currentCut.logicalOperators.at(subcutIndex) == "&&")
->
+            tempDecision = subcutDecisions.at(subcutIndex) && subcutDecisions.at(subcutIndex+1);
->
+          else if(currentCut.logicalOperators.at(subcutIndex) == "|"|| currentCut.logicalOperators.at(subcutIndex) == "||")
->
+            tempDecision = subcutDecisions.at(subcutIndex) || subcutDecisions.at(subcutIndex+1);
->
+        }
->
+        decision = tempDecision;
->
+      }
-<
+    individualFlags[inputType].at(currentCutIndex).push_back(decision);
-<
->
->
+    individualFlags.at(inputType).at(currentCutIndex).push_back(decision);
+    //set flags for objects that pass each cut AND all the previous cuts
+    bool previousCumulativeFlag = true;
+    for(uint previousCutIndex = 0; previousCutIndex != currentCutIndex; previousCutIndex++){
-<
+      if(previousCumulativeFlag && individualFlags[inputType].at(previousCutIndex).at(object)) previousCumulativeFlag = true;
->
+      if(previousCumulativeFlag && individualFlags.at(inputType).at(previousCutIndex).at(object)) previousCumulativeFlag = true;
+      else{ previousCumulativeFlag = false; break;}
-<
+    cumulativeFlags[inputType].at(currentCutIndex).push_back(previousCumulativeFlag && decision);
-<
->
+    cumulativeFlags.at(inputType).at(currentCutIndex).push_back(previousCumulativeFlag && decision);
->
-<
->
-+
+template <class InputCollection1, class InputCollection2>
-+
+void OSUAnalysis::setObjectFlags(cut &currentCut, uint currentCutIndex, flagMap &individualFlags, flagMap &cumulativeFlags, \
-+
+                                 InputCollection1 inputCollection1, InputCollection2 inputCollection2, vector<bool> flags1, vector<bool> flags2, string inputType){
-+
-+
-+
+  bool sameObjects = false;
-+
+  if(typeid(InputCollection1).name() == typeid(InputCollection2).name()) sameObjects = true;
-+
-+
+  // Get the strings for the two objects that make up the pair.
-+
+  string obj1Type, obj2Type;
-+
+  getTwoObjs(inputType, obj1Type, obj2Type);
-+
+  bool isTwoTypesOfObject = true;
-+
+  if (obj1Type==obj2Type) isTwoTypesOfObject = false;
-+
-+
+  // Initialize the flags for individual objects to all be false, if the cut is on the pair.
-+
+  // Set them to true later, if any paired object passes (in which case both of its constituents should pass).
-+
+  if (currentCut.inputCollection == inputType) {
-+
+    for (uint object1 = 0; object1 != inputCollection1->size(); object1++) {
-+
+      individualFlags.at(obj1Type).at(currentCutIndex).push_back(false);
-+
+      cumulativeFlags.at(obj1Type).at(currentCutIndex).push_back(false);
-+
+    }
-+
+    if (isTwoTypesOfObject) { // Only initialize the second object if it is different from the first.
-+
+      for (uint object2 = 0; object2 != inputCollection2->size(); object2++)  {
-+
+        individualFlags.at(obj2Type).at(currentCutIndex).push_back(false);
-+
+        cumulativeFlags.at(obj2Type).at(currentCutIndex).push_back(false);
-+
+      }
-+
+    }
-+
+  }
-+
+  int counter = 0;
-+
+  for (uint object1 = 0; object1 != inputCollection1->size(); object1++){
-+
+    for (uint object2 = 0; object2 != inputCollection2->size(); object2++){
-<
+DEFINE_FWK_MODULE(OSUAnalysis);
->
+      if(sameObjects && object1 >= object2) continue;//account for duplicate pairs if both collections are the same
->
->
->
+      bool decision = true;//object passes if this cut doesn't cut on that type of object
->
->
+      if(currentCut.inputCollection == inputType){
->
->
+        vector<bool> subcutDecisions;
->
+        for( int subcutIndex = 0; subcutIndex != currentCut.numSubcuts; subcutIndex++){
->
+          string stringValue = "";
->
+          double value = valueLookup(&inputCollection1->at(object1), &inputCollection2->at(object2), currentCut.variables.at(subcutIndex), currentCut.functions.at(subcutIndex), stringValue);
->
+          if (stringValue == "") subcutDecisions.push_back(evaluateComparison(value,currentCut.comparativeOperators.at(subcutIndex),currentCut.cutValues.at(subcutIndex)));
->
+          else subcutDecisions.push_back(evaluateComparison(stringValue,currentCut.comparativeOperators.at(subcutIndex),currentCut.cutStringValues.at(subcutIndex)));
->
+        }
->
->
+        if(currentCut.numSubcuts == 1) decision = subcutDecisions.at(0);
->
+        else{
->
+          bool tempDecision = subcutDecisions.at(0);
->
+          for( int subcutIndex = 1; subcutIndex < currentCut.numSubcuts; subcutIndex++){
->
+            if(currentCut.logicalOperators.at(subcutIndex-1) == "&" || currentCut.logicalOperators.at(subcutIndex-1) == "&&")
->
+              tempDecision = tempDecision && subcutDecisions.at(subcutIndex);
->
+            else if(currentCut.logicalOperators.at(subcutIndex-1) == "|"|| currentCut.logicalOperators.at(subcutIndex-1) == "||")
->
+              tempDecision = tempDecision || subcutDecisions.at(subcutIndex);
->
+          }
->
+          decision = tempDecision;
->
+        }
->
+      }
->
+      // if (decision) isPassObj1.at(object1) = true;
->
+      // if (decision) isPassObj2.at(object2) = true;
->
+      individualFlags.at(inputType).at(currentCutIndex).push_back(decision);
->
+      if (decision && currentCut.inputCollection == inputType) {  // only set the flags for the individual objects if the pair object is being cut on
->
+        individualFlags.at(obj1Type).at(currentCutIndex).at(object1) = true;
->
+        individualFlags.at(obj2Type).at(currentCutIndex).at(object2) = true;
->
+      }
->
->
+      //set flags for objects that pass each cut AND all the previous cuts
->
+      bool previousCumulativeFlag = true;
->
+      for(uint previousCutIndex = 0; previousCutIndex != currentCutIndex; previousCutIndex++){
->
+        if(previousCumulativeFlag && individualFlags.at(inputType).at(previousCutIndex).at(counter)) previousCumulativeFlag = true;
->
+        else{ previousCumulativeFlag = false; break;}
->
+      }
->
+      //apply flags for the components of the composite object as well
->
+      bool currentCumulativeFlag = true;
->
+      if(flags1.size() == 0 && flags2.size() == 0) currentCumulativeFlag = previousCumulativeFlag && decision;
->
+      else if(flags1.size() == 0) currentCumulativeFlag = previousCumulativeFlag && decision && flags2.at(object2);
->
+      else if(flags2.size() == 0) currentCumulativeFlag = previousCumulativeFlag && decision && flags1.at(object1);
->
+      else currentCumulativeFlag = previousCumulativeFlag && decision && flags1.at(object1) && flags2.at(object2);
->
+      cumulativeFlags.at(inputType).at(currentCutIndex).push_back(currentCumulativeFlag);
->
+      if (currentCumulativeFlag && currentCut.inputCollection == inputType) {  // only set the flags for the individual objects if the pair object is being cut on
->
+        cumulativeFlags.at(obj1Type).at(currentCutIndex).at(object1) = true && getPreviousCumulativeFlags(currentCutIndex, individualFlags, obj1Type, object1);
->
+        cumulativeFlags.at(obj2Type).at(currentCutIndex).at(object2) = true && getPreviousCumulativeFlags(currentCutIndex, individualFlags, obj2Type, object2);
->
+      }
->
+      counter++;
->
->
+    } // end   for (uint object2 = 0; object2 != inputCollection2->size(); object2++)
->
+  }  // end   for (uint object1 = 0; object1 != inputCollection1->size(); object1++)
->
->
+}
->
->
->
+bool OSUAnalysis::getPreviousCumulativeFlags(uint currentCutIndex, flagMap &individualFlags, string obj1Type, uint object1) {
->
+  // Return true iff for the collection obj1Type, the element with index object1 has individal flags set to true for
->
+  // all cuts up to currentCutIndex
->
+  bool previousCumulativeFlag = true;
->
+  for (uint previousCutIndex = 0; previousCutIndex < currentCutIndex; previousCutIndex++) {
->
+    if (previousCumulativeFlag && individualFlags.at(obj1Type).at(previousCutIndex).at(object1)) previousCumulativeFlag = true;
->
+    else {
->
+      previousCumulativeFlag = false; break;
->
+    }
->
+  }
->
+  return previousCumulativeFlag;
->
+}
->
->
->
->
+template <class InputCollection>
->
+void OSUAnalysis::assignTreeBranch(BranchSpecs parameters, InputCollection inputCollection, vector<bool> flags){
->
+  // This function is similar to fill1DHistogram(), but instead of filling a histogram it assigns a value to a variable for the BNTree
->
->
+  if (BNTreeBranchVals_.count(parameters.name)==0) cout << "Error[assignTreeBranch]:  trying to assign value to " << parameters.name << " that does not have a branch set up.  Will likely seg fault." << endl;
->
+  for (uint object = 0; object != inputCollection->size(); object++) {
->
->
+    if (!plotAllObjectsInPassingEvents_ && !flags.at(object)) continue;
->
->
+    string inputVariable = parameters.inputVariable;
->
+    string function = "";
->
+    string stringValue = "";
->
+    double value = valueLookup(&inputCollection->at(object), inputVariable, function, stringValue);
->
+    BNTreeBranchVals_.at(parameters.name).push_back(value);
->
->
+  }
->
+}
->
->
->
+template <class InputCollection>
->
+void OSUAnalysis::fill1DHistogram(TH1* histo, histogram parameters, InputCollection inputCollection,vector<bool> flags, double scaleFactor){
->
->
+  for (uint object = 0; object != inputCollection->size(); object++){
->
->
+    if(!plotAllObjectsInPassingEvents_ && !flags.at(object)) continue;
->
->
+    string currentString = parameters.inputVariables.at(0);
->
+    string inputVariable = "";
->
+    string function = "";
->
+    if(currentString.find("(")==string::npos){
->
+      inputVariable = currentString;// variable to cut on
->
+    }
->
+    else{
->
+      function = currentString.substr(0,currentString.find("("));//function comes before the "("
->
+      inputVariable = currentString.substr(currentString.find("(")+1);//get rest of string
->
+      inputVariable = inputVariable.substr(0,inputVariable.size()-1);//remove trailing ")"
->
+    }
->
->
+    string stringValue = "";
->
+    double value = valueLookup(&inputCollection->at(object), inputVariable, function, stringValue);
->
+    histo->Fill(value,scaleFactor);
->
->
+    if (printEventInfo_) {
->
+      // Write information about event to screen, for testing purposes.
->
+      cout << "  Info for event:  value for histogram " << histo->GetName() << ":  " << value << endl;
->
+    }
->
->
+  }
->
+}
->
->
+template <class InputCollection1, class InputCollection2>
->
+void OSUAnalysis::fill1DHistogram(TH1* histo, histogram parameters, InputCollection1 inputCollection1, InputCollection2 inputCollection2, vector<bool> flags1, vector<bool> flags2, vector<bool> pairFlags, double scaleFactor){
->
->
+  bool sameObjects = false;
->
+  if(typeid(InputCollection1).name() == typeid(InputCollection2).name()) sameObjects = true;
->
->
+  int pairCounter = -1;
->
+  for (uint object1 = 0; object1 != inputCollection1->size(); object1++){
->
+    for (uint object2 = 0; object2 != inputCollection2->size(); object2++){
->
->
+      if(sameObjects && object1 >= object2) continue;//account for duplicate pairs if both collections are the same
->
->
+      pairCounter++;
->
+      //only take objects which have passed all cuts and pairs which have passed all cuts
->
+      if(!plotAllObjectsInPassingEvents_ && !flags1.at(object1)) continue;
->
+      if(!plotAllObjectsInPassingEvents_ && !flags2.at(object2)) continue;
->
+      if(!plotAllObjectsInPassingEvents_ && !pairFlags.at(pairCounter)) continue;
->
->
+      string currentString = parameters.inputVariables.at(0);
->
+      string inputVariable = "";
->
+      string function = "";
->
+      if(currentString.find("(")==string::npos){
->
+        inputVariable = currentString;// variable to cut on
->
+      }
->
+      else{
->
+        function = currentString.substr(0,currentString.find("("));//function comes before the "("
->
+        inputVariable = currentString.substr(currentString.find("(")+1);//get rest of string
->
+        inputVariable = inputVariable.substr(0,inputVariable.size()-1);//remove trailing ")"
->
+      }
->
->
+      string stringValue = "";
->
+      double value = valueLookup(&inputCollection1->at(object1), &inputCollection2->at(object2), inputVariable, function, stringValue);
->
+      histo->Fill(value,scaleFactor);
-+
+    }
-+
+  }
-+
-+
+}
-+
-+
-+
+template <class InputCollection>
-+
+void OSUAnalysis::fill2DHistogram(TH2* histo, histogram parameters, InputCollection inputCollection,vector<bool> flags, double scaleFactor){
-+
-+
+  for (uint object = 0; object != inputCollection->size(); object++){
-+
-+
+    if(!plotAllObjectsInPassingEvents_ && !flags.at(object)) continue;
-+
-+
+    string stringValue = "";
-+
+    string currentString = parameters.inputVariables.at(0);
-+
+    string inputVariable = "";
-+
+    string function = "";
-+
+    if(currentString.find("(")==string::npos){
-+
+      inputVariable = currentString;// variable to cut on
-+
+    }
-+
+    else{
-+
+      function = currentString.substr(0,currentString.find("("));//function comes before the "("
-+
+      inputVariable = currentString.substr(currentString.find("(")+1);//get rest of string
-+
+      inputVariable = inputVariable.substr(0,inputVariable.size()-1);//remove trailing ")"
-+
+    }
-+
+    double valueX = valueLookup(&inputCollection->at(object), inputVariable, function, stringValue);
-+
-+
+    currentString = parameters.inputVariables.at(1);
-+
+    inputVariable = "";
-+
+    function = "";
-+
+    if(currentString.find("(")==string::npos){
-+
+      inputVariable = currentString;// variable to cut on
-+
+    }
-+
+    else{
-+
+      function = currentString.substr(0,currentString.find("("));//function comes before the "("
-+
+      inputVariable = currentString.substr(currentString.find("(")+1);//get rest of string
-+
+      inputVariable = inputVariable.substr(0,inputVariable.size()-1);//remove trailing ")"
-+
+    }
-+
-+
+    double valueY = valueLookup(&inputCollection->at(object), inputVariable, function, stringValue);
-+
-+
+    histo->Fill(valueX,valueY,scaleFactor);
-+
-+
+  }
-+
-+
+}
-+
-+
+template <class InputCollection1, class InputCollection2>
-+
+void OSUAnalysis::fill2DHistogram(TH2* histo, histogram parameters, InputCollection1 inputCollection1, InputCollection2 inputCollection2, vector<bool> flags1, vector<bool> flags2, vector<bool> pairFlags, double scaleFactor){
-+
-+
+  bool sameObjects = false;
-+
+  if(typeid(InputCollection1).name() == typeid(InputCollection2).name()) sameObjects = true;
-+
-+
+  int pairCounter = -1;
-+
+  for (uint object1 = 0; object1 != inputCollection1->size(); object1++){
-+
+    for (uint object2 = 0; object2 != inputCollection2->size(); object2++){
-+
-+
+      if(sameObjects && object1 >= object2) continue;//account for duplicate pairs if both collections are the same
-+
-+
+      pairCounter++;
-+
-+
+      //only take objects which have passed all cuts and pairs which have passed all cuts
-+
+      if(!plotAllObjectsInPassingEvents_ && !flags1.at(object1)) continue;
-+
+      if(!plotAllObjectsInPassingEvents_ && !flags2.at(object2)) continue;
-+
+      if(!plotAllObjectsInPassingEvents_ && !pairFlags.at(pairCounter)) continue;
-+
-+
+      string stringValue = "";
-+
+      string currentString = parameters.inputVariables.at(0);
-+
+      string inputVariable = "";
-+
+      string function = "";
-+
+      if(currentString.find("(")==string::npos){
-+
+        inputVariable = currentString;// variable to cut on
-+
+      }
-+
+      else{
-+
+        function = currentString.substr(0,currentString.find("("));//function comes before the "("
-+
+        inputVariable = currentString.substr(currentString.find("(")+1);//get rest of string
-+
+        inputVariable = inputVariable.substr(0,inputVariable.size()-1);//remove trailing ")"
-+
+      }
-+
+      double valueX = valueLookup(&inputCollection1->at(object1), &inputCollection2->at(object2), inputVariable, function, stringValue);
-+
-+
+      currentString = parameters.inputVariables.at(1);
-+
+      inputVariable = "";
-+
+      function = "";
-+
+      if(currentString.find("(")==string::npos){
-+
+        inputVariable = currentString;// variable to cut on
-+
+      }
-+
+      else{
-+
+        function = currentString.substr(0,currentString.find("("));//function comes before the "("
-+
+        inputVariable = currentString.substr(currentString.find("(")+1);//get rest of string
-+
+        inputVariable = inputVariable.substr(0,inputVariable.size()-1);//remove trailing ")"
-+
+      }
-+
+      double valueY = valueLookup(&inputCollection1->at(object1), &inputCollection2->at(object2), inputVariable, function, stringValue);
-+
-+
-+
+      histo->Fill(valueX,valueY,scaleFactor);
-+
-+
+    }
-+
+  }
-+
-+
+}
-+
-+
-+
+template <class InputObject>
-+
+int OSUAnalysis::getGenMatchedParticleIndex(InputObject object){
-+
-+
+  int bestMatchIndex = -1;
-+
+  double bestMatchDeltaR = 999;
-+
-+
+  for(BNmcparticleCollection::const_iterator mcparticle = mcparticles->begin (); mcparticle != mcparticles->end (); mcparticle++){
-+
-+
+    double currentDeltaR = deltaR(object->eta,object->phi,mcparticle->eta,mcparticle->phi);
-+
+    if(currentDeltaR > 0.05) continue;
-+
+    //     cout << setprecision(3) << setw(20)
-+
+    //          << "\tcurrentParticle:  eta = " << mcparticles->at(mcparticle - mcparticles->begin()).eta
-+
+    //          << setw(20)
-+
+    //          << "\tphi = " << mcparticles->at(mcparticle - mcparticles->begin()).phi
-+
+    //          << setw(20)
-+
+    //          << "\tdeltaR = " << currentDeltaR
-+
+    //          << setprecision(1)
-+
+    //          << setw(20)
-+
+    //          << "\tid = " << mcparticles->at(mcparticle - mcparticles->begin()).id
-+
+    //          << setw(20)
-+
+    //          << "\tmotherId = " << mcparticles->at(mcparticle - mcparticles->begin()).motherId
-+
+    //          << setw(20)
-+
+    //          << "\tstatus = " << mcparticles->at(mcparticle - mcparticles->begin()).status<< endl;
-+
+    if(currentDeltaR < bestMatchDeltaR && mcparticles->at(mcparticle - mcparticles->begin()).id != mcparticles->at(mcparticle - mcparticles->begin()).motherId){
-+
+      bestMatchIndex = mcparticle - mcparticles->begin();
-+
+      bestMatchDeltaR = currentDeltaR;
-+
+    }
-+
-+
+  }
-+
+  //   if(bestMatchDeltaR != 999)  cout << "bestMatch:  deltaR = " << bestMatchDeltaR << "   id = " << mcparticles->at(bestMatchIndex).id << "   motherId = " << mcparticles->at(bestMatchIndex).motherId << endl;
-+
+  //   else cout << "no match found..." << endl;
-+
+  return bestMatchIndex;
-+
-+
+}
-+
-+
-+
+int OSUAnalysis::findTauMotherIndex(const BNmcparticle* tau){
-+
-+
+  int bestMatchIndex = -1;
-+
+  double bestMatchDeltaR = 999;
-+
-+
+  for(BNmcparticleCollection::const_iterator mcparticle = mcparticles->begin (); mcparticle != mcparticles->end (); mcparticle++){
-+
+    if(fabs(mcparticle->id) != 15 || mcparticle->status !=3) continue;
-+
-+
+    double currentDeltaR = deltaR(tau->eta,tau->phi,mcparticle->eta,mcparticle->phi);
-+
+    if(currentDeltaR > 0.05) continue;
-+
-+
+    if(currentDeltaR < bestMatchDeltaR && mcparticles->at(mcparticle - mcparticles->begin()).id != mcparticles->at(mcparticle - mcparticles->begin()).motherId){
-+
+      bestMatchIndex = mcparticle - mcparticles->begin();
-+
+      bestMatchDeltaR = currentDeltaR;
-+
+    }
-+
-+
+  }
-+
-+
+  return bestMatchIndex;
-+
+}
-+
-+
-+
+// bin      particle type
-+
+// ---      -------------
-+
+//  0        unmatched
-+
+//  1        u
-+
+//  2        d
-+
+//  3        s
-+
+//  4        c
-+
+//  5        b
-+
+//  6        t
-+
+//  7        e
-+
+//  8        mu
-+
+//  9        tau
-+
+// 10        nu
-+
+// 11        g
-+
+// 12        gamma
-+
+// 13        Z
-+
+// 14        W
-+
+// 15        light meson
-+
+// 16        K meson
-+
+// 17        D meson
-+
+// 18        B meson
-+
+// 19        light baryon
-+
+// 20        strange baryon
-+
+// 21        charm baryon
-+
+// 22        bottom baryon
-+
+// 23        QCD string
-+
+// 24        other
-+
-+
+int OSUAnalysis::getPdgIdBinValue(int pdgId){
-+
-+
+  int binValue = -999;
-+
+  int absPdgId = fabs(pdgId);
-+
+  if(pdgId == -1) binValue = 0;
-+
+  else if(absPdgId <= 6 ) binValue = absPdgId;
-+
+  else if(absPdgId == 11 ) binValue = 7;
-+
+  else if(absPdgId == 13 ) binValue = 8;
-+
+  else if(absPdgId == 15 ) binValue = 9;
-+
+  else if(absPdgId == 12 || absPdgId == 14 || absPdgId == 16 ) binValue = 10;
-+
+  else if(absPdgId == 21 ) binValue = 11;
-+
+  else if(absPdgId == 22 ) binValue = 12;
-+
+  else if(absPdgId == 23 ) binValue = 13;
-+
+  else if(absPdgId == 24 ) binValue = 14;
-+
+  else if(absPdgId > 100 && absPdgId < 300 && absPdgId != 130  ) binValue = 15;
-+
+  else if( absPdgId == 130 || (absPdgId > 300 && absPdgId < 400)  ) binValue = 16;
-+
+  else if(absPdgId > 400 && absPdgId < 500  ) binValue = 17;
-+
+  else if(absPdgId > 500 && absPdgId < 600  ) binValue = 18;
-+
+  else if(absPdgId > 1000 && absPdgId < 3000  ) binValue = 19;
-+
+  else if(absPdgId > 3000 && absPdgId < 4000  ) binValue = 20;
-+
+  else if(absPdgId > 4000 && absPdgId < 5000  ) binValue = 21;
-+
+  else if(absPdgId > 5000 && absPdgId < 6000  ) binValue = 22;
-+
+  else if(absPdgId == 92  ) binValue = 23;
-+
-+
+  else binValue = 24;
-+
-+
+  return binValue;
-+
-+
+}
-+
-+
+const BNprimaryvertex *
-+
+OSUAnalysis::chosenVertex ()
-+
+{
-+
+  const BNprimaryvertex *chosenVertex = 0;
-+
+  if(cumulativeFlags.find ("primaryvertexs") != cumulativeFlags.end ()){
-+
+    vector<bool> vertexFlags;
-+
+    for (int i = cumulativeFlags.at("primaryvertexs").size() - 1; i >= 0; i--){
-+
+      if (cumulativeFlags.at("primaryvertexs").at(i).size()){
-+
+        vertexFlags = cumulativeFlags.at("primaryvertexs").at(i);
-+
+        break;
-+
+      }
-+
+    }
-+
+    for (uint vertexIndex = 0; vertexIndex != vertexFlags.size(); vertexIndex++){
-+
+      if(!vertexFlags.at(vertexIndex)) continue;
-+
+      chosenVertex = & primaryvertexs->at(vertexIndex);
-+
+      break;
-+
+    }
-+
+  }
-+
+  else if (find (objectsToGet.begin (), objectsToGet.end (), "primaryvertexs") != objectsToGet.end ())
-+
+    chosenVertex = & primaryvertexs->at (0);
-+
-+
+  return chosenVertex;
-+
+}
-+
-+
+const BNmet *
-+
+OSUAnalysis::chosenMET ()
-+
+{
-+
+  const BNmet *chosenMET = 0;
-+
+  if(cumulativeFlags.find ("mets") != cumulativeFlags.end ()){
-+
+    vector<bool> metFlags;
-+
+    for (int i = cumulativeFlags.at("mets").size() - 1; i >= 0; i--){
-+
+      if (cumulativeFlags.at("mets").at(i).size()){
-+
+        metFlags = cumulativeFlags.at("mets").at(i);
-+
+        break;
-+
+      }
-+
+    }
-+
+    for (uint metIndex = 0; metIndex != metFlags.size(); metIndex++){
-+
+      if(!metFlags.at(metIndex)) continue;
-+
+      chosenMET = & mets->at(metIndex);
-+
+      break;
-+
+    }
-+
+  }
-+
+  else if (find (objectsToGet.begin (), objectsToGet.end (), "mets") != objectsToGet.end ())
-+
+    chosenMET = & mets->at (0);
-+
-+
+  return chosenMET;
-+
+}
-+
-+
+const BNelectron *
-+
+OSUAnalysis::chosenElectron ()
-+
+{
-+
+  const BNelectron *chosenElectron = 0;
-+
+  if(cumulativeFlags.find ("electrons") != cumulativeFlags.end ()){
-+
+    vector<bool> electronFlags;
-+
+    for (int i = cumulativeFlags.at("electrons").size() - 1; i >= 0; i--){
-+
+      if (cumulativeFlags.at("electrons").at(i).size()){
-+
+        electronFlags = cumulativeFlags.at("electrons").at(i);
-+
+        break;
-+
+      }
-+
+    }
-+
+    for (uint electronIndex = 0; electronIndex != electronFlags.size(); electronIndex++){
-+
+      if(!electronFlags.at(electronIndex)) continue;
-+
+      chosenElectron = & electrons->at(electronIndex);
-+
+      break;
-+
+    }
-+
+  }
-+
+  else if (find (objectsToGet.begin (), objectsToGet.end (), "electrons") != objectsToGet.end ())
-+
+    chosenElectron = & electrons->at (0);
-+
-+
+  return chosenElectron;
-+
+}
-+
-+
+const BNmuon *
-+
+OSUAnalysis::chosenMuon ()
-+
+{
-+
+  const BNmuon *chosenMuon = 0;
-+
+  if(cumulativeFlags.find ("muons") != cumulativeFlags.end ()){
-+
+    vector<bool> muonFlags;
-+
+    for (int i = cumulativeFlags.at("muons").size() - 1; i >= 0; i--){
-+
+      if (cumulativeFlags.at("muons").at(i).size()){
-+
+        muonFlags = cumulativeFlags.at("muons").at(i);
-+
+        break;
-+
+      }
-+
+    }
-+
+    for (uint muonIndex = 0; muonIndex != muonFlags.size(); muonIndex++){
-+
+      if(!muonFlags.at(muonIndex)) continue;
-+
+      chosenMuon = & muons->at(muonIndex);
-+
+      break;
-+
+    }
-+
+  }
-+
+  else if (find (objectsToGet.begin (), objectsToGet.end (), "muons") != objectsToGet.end ())
-+
+    chosenMuon = & muons->at (0);
-+
-+
+  return chosenMuon;
-+
+}
-+
-+
+DEFINE_FWK_MODULE(OSUAnalysis);

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+Removed lines
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+Changed lines

Comparing UserCode/OSUT3Analysis/AnaTools/plugins/OSUAnalysis.cc (file contents): Revision 1.6 by lantonel, Wed Jan 30 16:28:22 2013 UTC vs. Revision 1.83 by biliu, Wed Jun 5 03:18:56 2013 UTC

Diff Legend

Comparing UserCode/OSUT3Analysis/AnaTools/plugins/OSUAnalysis.cc (file contents):
Revision 1.6 by lantonel, Wed Jan 30 16:28:22 2013 UTC vs.
Revision 1.83 by biliu, Wed Jun 5 03:18:56 2013 UTC