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#ifndef OSU_ANALYSIS
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#define OSU_ANALYSIS
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#include <map>
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#include <string>
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#include <vector>
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#include <fstream>
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#include <iostream>
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#include <algorithm>
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#include <regex>
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#include "TH1.h"
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#include "TH2.h"
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#include "TH1D.h"
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#include "TH2D.h"
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#include "TLorentzVector.h"
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#include "TTree.h"
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#include "FWCore/Framework/interface/EDAnalyzer.h"
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#include "FWCore/Framework/interface/Event.h"
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#include "FWCore/Framework/interface/EventSetup.h"
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#include "FWCore/ParameterSet/interface/ParameterSet.h"
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#include "FWCore/ServiceRegistry/interface/Service.h"
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#include "DataFormats/Common/interface/Handle.h"
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#include "CommonTools/UtilAlgos/interface/TFileService.h"
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#include "FWCore/Framework/interface/MakerMacros.h"
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#include "DataFormats/Math/interface/deltaPhi.h"
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#include "DataFormats/Math/interface/deltaR.h"
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#include "ProductArea/BNcollections/interface/BNbxlumi.h"
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#include "ProductArea/BNcollections/interface/BNelectron.h"
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#include "ProductArea/BNcollections/interface/BNevent.h"
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#include "ProductArea/BNcollections/interface/BNjet.h"
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#include "ProductArea/BNcollections/interface/BNmcparticle.h"
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#include "ProductArea/BNcollections/interface/BNmet.h"
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#include "ProductArea/BNcollections/interface/BNmuon.h"
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#include "ProductArea/BNcollections/interface/BNphoton.h"
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#include "ProductArea/BNcollections/interface/BNprimaryvertex.h"
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#include "ProductArea/BNcollections/interface/BNskimbits.h"
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#include "ProductArea/BNcollections/interface/BNsupercluster.h"
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#include "ProductArea/BNcollections/interface/BNtrack.h"
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#include "ProductArea/BNcollections/interface/BNtrigger.h"
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#include "ProductArea/BNcollections/interface/BNtrigobj.h"
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#include "ProductArea/BNcollections/interface/BNtau.h"
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#include "ProductArea/BNcollections/interface/BNgenjet.h"
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#include "OSUT3Analysis/AnaTools/interface/CutFlow.h"
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#include "OSUT3Analysis/AnaTools/interface/PUWeight.h"
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#include "OSUT3Analysis/AnaTools/interface/SFWeight.h"
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#include "OSUT3Analysis/AnaTools/interface/StopCTauWeight.h"
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using namespace std;
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class OSUAnalysis : public edm::EDAnalyzer
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{
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public:
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OSUAnalysis (const edm::ParameterSet &);
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~OSUAnalysis ();
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void analyze (const edm::Event &, const edm::EventSetup &);
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bool evaluateComparison (double, string, double);
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bool evaluateComparison (string, string, string);
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bool evaluateTriggers (vector<string>, vector<string>, const BNtriggerCollection*);
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double applyFunction(string, double);
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double valueLookup (const BNjet* object, string variable, string function, string &stringValue);
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double valueLookup (const BNmuon* object, string variable, string function, string &stringValue);
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double valueLookup (const BNmuon* object1, const BNmuon* object2, string variable, string function, string &stringValue);
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double valueLookup (const BNelectron* object, string variable, string function, string &stringValue);
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double valueLookup (const BNelectron* object1, const BNelectron* object2, string variable, string function, string &stringValue);
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double valueLookup (const BNelectron* object1, const BNmuon* object2, string variable, string function, string &stringValue);
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double valueLookup (const BNelectron* object1, const BNjet* object2, string variable, string function, string &stringValue);
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double valueLookup (const BNelectron* object1, const BNtrack* object2, string variable, string function, string &stringValue);
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double valueLookup (const BNmuon* object1, const BNjet* object2, string variable, string function, string &stringValue);
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double valueLookup (const BNmuon* object1, const BNtrack* object2, string variable, string function, string &stringValue);
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double valueLookup (const BNmuon* object1, const BNtau* object2, string variable, string function, string &stringValue);
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double valueLookup (const BNtau* object1, const BNtau* object2, string variable, string function, string &stringValue);
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double valueLookup (const BNtau* object1, const BNtrack* object2, string variable, string function, string &stringValue);
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double valueLookup (const BNjet* object1, const BNjet* object2, string variable, string function, string &stringValue);
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double valueLookup (const BNevent* object, string variable, string function, string &stringValue);
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double valueLookup (const BNtau* object, string variable, string function, string &stringValue);
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double valueLookup (const BNmet* object, string variable, string function, string &stringValue);
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double valueLookup (const BNtrack* object, string variable, string function, string &stringValue);
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double valueLookup (const BNtrack* object1, const BNevent* object2, string variable, string function, string &stringValue);
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double valueLookup (const BNgenjet* object, string variable, string function, string &stringValue);
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double valueLookup (const BNmcparticle* object, string variable, string function, string &stringValue);
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double valueLookup (const BNprimaryvertex* object, string variable, string function, string &stringValue);
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double valueLookup (const BNbxlumi* object, string variable, string function, string &stringValue);
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double valueLookup (const BNphoton* object, string variable, string function, string &stringValue);
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double valueLookup (const BNsupercluster* object, string variable, string function, string &stringValue);
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double valueLookup (const BNtrigobj* object, string variable, string function, string &stringValue);
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double valueLookup (const BNelectron* object1, const BNtrigobj* object2, string variable, string function, string &stringValue);
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double valueLookup (const BNmuon* object1, const BNtrigobj* object2, string variable, string function, string &stringValue);
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double valueLookup (const BNstop* object, string variable, string function, string &stringValue);
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int getTrkIsIso (const BNtrack* track1, const BNtrackCollection* trackColl);
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double getTrkPtTrue (const BNtrack* track1, const BNmcparticleCollection* genPartColl);
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double getTrkPtRes (const BNtrack* track1);
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double getTrkIsIso (const BNtrack* track1);
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double getTrkCaloTotRhoCorr(const BNtrack* track);
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void WriteDeadEcal ();
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int getTrkIsMatchedDeadEcal (const BNtrack* track1);
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//BNskimbits
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//BNtrigobj
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vector<string> splitString (string);
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void getTwoObjs(string tempInputCollection, string& obj1, string& obj2);
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string getObjToGet(string obj);
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private:
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//flagMap:
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//string holds input collection type
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//outer vector corresponds to each cut
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//inner vector corresponds to each object in input collection
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//bool tells if object passes or fails cuts
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typedef map<string, vector < vector<bool> > > flagMap;
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//counterMap:
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//string holds input collection type
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//vector corresponds to each cut
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//int holds number of objects passing all cuts up to that point
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typedef map<string ,vector <int> > counterMap;
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// Remember to define parameters to be retrieved from the configuration file.
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edm::InputTag jets_;
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edm::InputTag muons_;
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edm::InputTag electrons_;
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edm::InputTag events_;
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edm::InputTag taus_;
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edm::InputTag mets_;
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edm::InputTag tracks_;
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edm::InputTag genjets_;
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edm::InputTag mcparticles_;
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edm::InputTag stops_;
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edm::InputTag primaryvertexs_;
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edm::InputTag bxlumis_;
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edm::InputTag photons_;
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edm::InputTag superclusters_;
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edm::InputTag triggers_;
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edm::InputTag trigobjs_;
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string puFile_;
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string deadEcalFile_;
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string muonSFFile_;
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string dataPU_;
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string electronSFID_;
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string muonSF_;
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string dataset_;
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string datasetType_;
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vector<edm::ParameterSet> channels_;
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vector<edm::ParameterSet> histogramSets_;
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vector<edm::ParameterSet> treeBranchSets_;
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bool plotAllObjectsInPassingEvents_;
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bool doPileupReweighting_;
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bool fillBNTree_;
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bool applyLeptonSF_;
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bool printEventInfo_;
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bool useTrackCaloRhoCorr_; // to use the calo-based rho correction for the by-hand calculation of the track isolation energy
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vector<double> stopCTau_;
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bool GetPlotsAfterEachCut_;
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struct DeadEcal {
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double etaEcal;
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double phiEcal;
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};
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vector<DeadEcal> DeadEcalVec;
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//Collections
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edm::Handle<BNtriggerCollection> triggers;
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edm::Handle<BNtrigobjCollection> trigobjs;
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edm::Handle<BNjetCollection> jets;
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edm::Handle<BNmuonCollection> muons;
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edm::Handle<BNelectronCollection> electrons;
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edm::Handle<BNeventCollection> events;
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edm::Handle<BNtauCollection> taus;
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edm::Handle<BNmetCollection> mets;
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edm::Handle<BNtrackCollection> tracks;
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edm::Handle<BNgenjetCollection> genjets;
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edm::Handle<BNmcparticleCollection> mcparticles;
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edm::Handle<BNprimaryvertexCollection> primaryvertexs;
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edm::Handle<BNbxlumiCollection> bxlumis;
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edm::Handle<BNphotonCollection> photons;
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edm::Handle<BNsuperclusterCollection> superclusters;
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edm::Handle<BNstopCollection> stops;
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edm::Handle<double> rhokt6CaloJetsHandle_;
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flagMap cumulativeFlags;
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vector<vector<map<string, TH1D*>>> oneDHists_;
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vector<vector<map<string, TH2D*>>> twoDHists_;
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vector<TTree*> BNTrees_; // one tree per channel
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map<string, vector<float>> BNTreeBranchVals_; // data structure to hold the values of the branches to be stored in the BNTrees_; the string is the name of a variable
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edm::Service<TFileService> fs_;
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CutFlow *masterCutFlow_;
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vector<CutFlow *> cutFlows_;
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typedef struct {
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string name;
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string title;
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vector<double> bins;
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vector<double> variableBinsX;
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vector<double> variableBinsY;
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string inputCollection;
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vector<string> inputVariables;
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} histogram;
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typedef struct {
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string name;
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string inputCollection;
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string inputVariable;
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} BranchSpecs;
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struct cut {
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string inputCollection;
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vector<string> functions;
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vector<string> variables;
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vector<string> comparativeOperators;// >, <, =, etc.
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vector<double> cutValues;
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vector<string> cutStringValues;
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vector<string> logicalOperators;//and, or
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int numSubcuts;
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int numberRequired;
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string eventComparativeOperator;
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string name;
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};
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struct channel {
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string name;
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vector<string> triggers;
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vector<string> triggersToVeto;
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vector<cut> cuts;
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};
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vector<string> objectsToGet;
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vector<string> objectsToCut;
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vector<string> objectsToPlot;
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vector<channel> channels;
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vector<histogram> histograms;
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vector<BranchSpecs> treeBranches_;
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PUWeight *puWeight_;
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MuonSFWeight *muonSFWeight_;
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double muonScaleFactor_;
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ElectronSFWeight *electronSFWeight_;
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double electronScaleFactor_;
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StopCTauWeight *stopCTauWeight_;
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double stopCTauScaleFactor_;
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template <class InputCollection> void setObjectFlags(cut &, uint, flagMap &, flagMap &, InputCollection, string);
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template <class InputCollection1, class InputCollection2> void setObjectFlags(cut &, uint, flagMap &, flagMap &, InputCollection1, InputCollection2, vector<bool>, vector<bool>, string);
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template <class InputCollection> void assignTreeBranch(BranchSpecs brSpecs, InputCollection inputCollection, vector<bool> flags);
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template <class InputCollection> void fill1DHistogram(TH1*, histogram, InputCollection, vector<bool>, double);
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template <class InputCollection1, class InputCollection2> void fill1DHistogram(TH1*, histogram, InputCollection1, InputCollection2, vector<bool>, vector<bool>, vector<bool>, double);
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template <class InputCollection> void fill2DHistogram(TH2*, histogram, InputCollection, vector<bool>, double);
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template <class InputCollection1, class InputCollection2> void fill2DHistogram(TH2*, histogram, InputCollection1, InputCollection2, vector<bool>, vector<bool>, vector<bool>, double);
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bool getPreviousCumulativeFlags(uint currentCutIndex, flagMap &individualFlags, string obj1Type, uint object1);
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template <class InputObject> int getGenMatchedParticleIndex(InputObject);
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int getPdgIdBinValue(int);
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int findTauMotherIndex(const BNmcparticle*);
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template <class InputObject> double getGenDeltaRLowest(InputObject);
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const BNprimaryvertex *chosenVertex ();
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const BNmet *chosenMET ();
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const BNelectron *chosenElectron ();
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const BNmuon *chosenMuon ();
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};
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#endif
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