| 1 |
#!/usr/bin/env python
|
| 2 |
import os
|
| 3 |
import sys
|
| 4 |
import datetime
|
| 5 |
import shutil
|
| 6 |
import re
|
| 7 |
import subprocess
|
| 8 |
import signal
|
| 9 |
import fcntl
|
| 10 |
from optparse import OptionParser
|
| 11 |
|
| 12 |
from OSUT3Analysis.Configuration.configurationOptions import *
|
| 13 |
from OSUT3Analysis.Configuration.processingUtilities import *
|
| 14 |
|
| 15 |
parser = OptionParser()
|
| 16 |
parser = set_commandline_arguments(parser)
|
| 17 |
|
| 18 |
parser.remove_option("-o")
|
| 19 |
parser.remove_option("-t")
|
| 20 |
parser.remove_option("-q")
|
| 21 |
parser.remove_option("-n")
|
| 22 |
parser.remove_option("-u")
|
| 23 |
parser.remove_option("-e")
|
| 24 |
parser.remove_option("-r")
|
| 25 |
parser.remove_option("-R")
|
| 26 |
parser.remove_option("-d")
|
| 27 |
parser.remove_option("-b")
|
| 28 |
parser.remove_option("--2D")
|
| 29 |
parser.remove_option("-y")
|
| 30 |
parser.remove_option("-p")
|
| 31 |
|
| 32 |
parser.add_option("-s", "--skimDir", dest="skimDir",
|
| 33 |
help="condor directory containing skim")
|
| 34 |
parser.add_option("-a", "--skimChannel", dest="skimChannel",
|
| 35 |
help="channel from skim to use")
|
| 36 |
parser.add_option("-d", "--mergeDaemon", action="store_true", dest="mergeDaemon", default=False,
|
| 37 |
help="launch a daemon to merge output when jobs are done")
|
| 38 |
|
| 39 |
(arguments, args) = parser.parse_args()
|
| 40 |
|
| 41 |
if (arguments.skimDir and not arguments.skimChannel) or (not arguments.skimDir and arguments.skimChannel):
|
| 42 |
print "Both the skim directory (--skimDir) and channel (--skimChannel) must be given."
|
| 43 |
exit ()
|
| 44 |
|
| 45 |
if arguments.localConfig:
|
| 46 |
sys.path.append(os.getcwd())
|
| 47 |
exec("from " + arguments.localConfig.rstrip('.py') + " import *")
|
| 48 |
|
| 49 |
condor_dir = set_condor_submit_dir(arguments)
|
| 50 |
short_condor_dir = condor_dir
|
| 51 |
short_condor_dir = re.sub (r".*/([^/]*)", r"\1", short_condor_dir)
|
| 52 |
short_condor_dir = list (short_condor_dir)
|
| 53 |
short_condor_dir[0] = short_condor_dir[0].upper ()
|
| 54 |
short_condor_dir = "".join (short_condor_dir)
|
| 55 |
|
| 56 |
if not os.path.exists (condor_dir):
|
| 57 |
os.system("mkdir %s" % (condor_dir))
|
| 58 |
|
| 59 |
split_datasets = split_composite_datasets(datasets, composite_dataset_definitions)
|
| 60 |
|
| 61 |
clusters = ""
|
| 62 |
for dataset in split_datasets:
|
| 63 |
output_dir = "%s/%s" % (condor_dir, dataset)
|
| 64 |
skim_dir = ""
|
| 65 |
skim_channel_dir = ""
|
| 66 |
command = "osusub -l %s -m %d -p %s %s %s %s %s" % (dataset, maxEvents[dataset], short_condor_dir, dataset_names[dataset], config_file, output_dir, nJobs[dataset])
|
| 67 |
if arguments.skimDir:
|
| 68 |
skim_dir = "condor/" + arguments.skimDir + "/" + dataset
|
| 69 |
skim_channel_dir = "condor/" + arguments.skimDir + "/" + dataset + "/" + arguments.skimChannel
|
| 70 |
if os.path.exists (skim_channel_dir):
|
| 71 |
command = "osusub -d %s -l %s -m %d -p %s %s %s %s %s" % (dataset_names[dataset], dataset, maxEvents[dataset], short_condor_dir, skim_channel_dir, config_file, output_dir, nJobs[dataset])
|
| 72 |
else:
|
| 73 |
print dataset + "/" + arguments.skimChannel + " not in skim directory. Skipping."
|
| 74 |
continue
|
| 75 |
print command
|
| 76 |
pid = os.getpid ()
|
| 77 |
p0 = subprocess.Popen (command.split (), bufsize=1, stdout=subprocess.PIPE)
|
| 78 |
flags = fcntl.fcntl (p0.stdout.fileno (), fcntl.F_GETFL, 0)
|
| 79 |
fcntl.fcntl (p0.stdout.fileno (), fcntl.F_SETFL, flags | os.O_NONBLOCK)
|
| 80 |
output = ""
|
| 81 |
while p0.poll () is None:
|
| 82 |
try:
|
| 83 |
tmpOutput = p0.stdout.read (1024)
|
| 84 |
print tmpOutput,
|
| 85 |
output += tmpOutput
|
| 86 |
except IOError:
|
| 87 |
pass
|
| 88 |
tmpOutput = p0.stdout.read (1024)
|
| 89 |
print tmpOutput,
|
| 90 |
output += tmpOutput
|
| 91 |
output = re.sub (r"[\f\n\r]", r"", output)
|
| 92 |
output = re.sub (r".*submitted to cluster (.*)\..*$", r"\1", output)
|
| 93 |
clusters += " " + output
|
| 94 |
if arguments.skimDir and os.path.exists (skim_channel_dir + "/skimNumberOfEvents.txt") and os.path.exists (skim_dir + "/numberOfEvents.txt") and os.path.exists (skim_dir + "/crossSectionInPicobarn.txt"):
|
| 95 |
shutil.copy (skim_channel_dir + "/skimNumberOfEvents.txt", output_dir + "/skimNumberOfEvents.txt")
|
| 96 |
shutil.copy (skim_dir + "/numberOfEvents.txt", output_dir + "/originalNumberOfEvents.txt")
|
| 97 |
f = open (skim_channel_dir + "/skimNumberOfEvents.txt", "r")
|
| 98 |
skimNumberOfEvents = float (f.read ().rstrip ())
|
| 99 |
f.close ()
|
| 100 |
f = open (skim_dir + "/numberOfEvents.txt", "r")
|
| 101 |
numberOfEvents = float (f.read ().rstrip ())
|
| 102 |
f.close ()
|
| 103 |
f = open (skim_dir + "/crossSectionInPicobarn.txt", "r")
|
| 104 |
crossSectionInPicobarn = float (f.read ().rstrip ())
|
| 105 |
f.close ()
|
| 106 |
if numberOfEvents:
|
| 107 |
crossSectionInPicobarn *= skimNumberOfEvents / numberOfEvents
|
| 108 |
else:
|
| 109 |
crossSectionInPicobarn *= skimNumberOfEvents * numberOfEvents
|
| 110 |
f = open (output_dir + "/crossSectionInPicobarn.txt", "w")
|
| 111 |
f.write (str (crossSectionInPicobarn) + "\n")
|
| 112 |
f.close ()
|
| 113 |
|
| 114 |
if arguments.mergeDaemon:
|
| 115 |
command = "mergeOutput.py"
|
| 116 |
if arguments.condorDir:
|
| 117 |
command += " -c " + arguments.condorDir
|
| 118 |
pid = os.fork ()
|
| 119 |
if not pid:
|
| 120 |
signal.signal (signal.SIGHUP, signal.SIG_IGN)
|
| 121 |
pid = os.getpid ()
|
| 122 |
if arguments.localConfig:
|
| 123 |
shutil.copy (arguments.localConfig, "mergeDaemonOptions_" + str (pid) + ".py")
|
| 124 |
command += " -l mergeDaemonOptions_" + str (pid) + ".py"
|
| 125 |
os.execvp ("mergeDaemon.pl", ["mergeDaemon.pl", command] + clusters.split ())
|
| 126 |
else:
|
| 127 |
print "\nMerging daemon PID: " + str (pid)
|
