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Comparing UserCode/OSUT3Analysis/DBTools/scripts/osudb (file contents):
Revision 1.2 by ahart, Wed Jun 6 12:31:55 2012 UTC vs.
Revision 1.4 by ahart, Tue Jul 31 14:12:19 2012 UTC

# Line 3 | Line 3
3   use strict;
4   use Mysql;
5   use Getopt::Long;
6 + use File::Copy;
7  
8   sub getDataset;
9   sub dbUpdate;
10 + sub dbDelete;
11   sub addSlashes;
12 + sub uploadRelease;
13  
14 < our $db;
14 > our $db = Mysql->connect ("cmshead.mps.ohio-state.edu", "ntuple", "osuT3User") or die "Failed to connect to Tier 3, stopped";
15  
16   my %opt;
17   Getopt::Long::Configure ("bundling");
18 < GetOptions (\%opt, "comment|c=s", "format|f=s", "pyConfig|p=s", "crabCfg|b=s", "jsonFile|j=s", "remoteLocation|r=s", "lumiSummary|s=s", "location|l=s", "help|h");
18 > GetOptions (\%opt, "comment|c=s", "format|f=s", "pyConfig|p=s", "crabCfg|b=s", "jsonFile|j=s", "lumiSummary|s=s", "location|l=s", "fileList|t=s", "release|r=s", "help|h");
19   my $argc = @ARGV;
20  
21 < printHelp () if $opt{"help"};
21 > printHelp ($ARGV[0]) if $opt{"help"};
22   printHelp () if $argc != 2;
23 < printHelp () if $ARGV[0] != "create" && $ARGV[0] != "update" && $ARGV[0] != "finish" && $ARGV[0] != "deprecate";
24 < my $id = -1;
25 < $id = getDataset ($ARGV[1]) if $ARGV[0] ne "create";
26 < $ARGV[0] = "create" if $id < 0;
27 < my $status = "present";
28 < $status = "" if $ARGV[0] eq "update";
29 < $status = "deprecated" if $ARGV[0] eq "deprecate";
30 < $opt{"format"} = "BEAN" if $ARGV[0] eq "create" && !$opt{"format"};
31 < dbUpdate ($id, $ARGV[1], $ENV{"USER"}, $opt{"format"}, $opt{"location"}, $opt{"remoteLocation"}, $status, $opt{"comment"}, $opt{"pyConfig"}, $opt{"crabCfg"}, $opt{"jsonFile"}, $opt{"lumiSummary"});
23 > printHelp () if $ARGV[0] ne "create" && $ARGV[0] ne "update" && $ARGV[0] ne "finish" && $ARGV[0] ne "deprecate" && $ARGV[0] ne "uploadRelease" && $ARGV[0] ne "deleteEntry";
24 > if (($ARGV[0] eq "create" || $ARGV[0] eq "finish") && !$opt{"location"})
25 >  {
26 >    print "The directory containing the ntuples must be given!\n";
27 >    exit;
28 >  }
29 > if ($ARGV[0] eq "uploadRelease" && !$opt{"pyConfig"} && !$opt{"release"})
30 >  {
31 >    print "Both the Python and the CMSSW release must be given!\n";
32 >    exit;
33 >  }
34 > if ($ARGV[0] ne "uploadRelease")
35 >  {
36 >    my $id = -1;
37 >    $id = getDataset ($ARGV[0], $ARGV[1]) if $ARGV[0] ne "create";
38 >    $ARGV[0] = "create" if $id < 0;
39 >    my $status = "present";
40 >    $status = "" if $ARGV[0] eq "update";
41 >    $status = "deprecated" if $ARGV[0] eq "deprecate";
42 >    $opt{"format"} = "BEAN" if $ARGV[0] eq "create" && !$opt{"format"};
43 >    $opt{"location"} = "$ENV{'PWD'}/$opt{'location'}" if !($opt{"location"} =~ m/^\//);
44 >    dbUpdate ($id, $ARGV[1], $ENV{"USER"}, $opt{"format"}, $opt{"location"}, $opt{"fileList"}, $status, $opt{"comment"}, $opt{"pyConfig"}, $opt{"crabCfg"}, $opt{"jsonFile"}, $opt{"lumiSummary"});
45 >    dbDelete ($id) if $ARGV[0] eq "deleteEntry";
46 >  }
47 > else
48 >  {
49 >    my $parentDir = "./$opt{'release'}";
50 >    $parentDir =~ s/CMSSW_[^\/]*//g;
51 >    $parentDir =~ s/\/\/*/\//g;
52 >    my $cmsswRelease = $opt{'release'};
53 >    $cmsswRelease =~ s/^.*CMSSW_([^\/]*).*$/CMSSW_$1/;
54 >    `tar -C $parentDir -czf $ARGV[1].tar.gz $opt{"release"}`;
55 >    $opt{"format"} = "BEAN" if !$opt{"format"};
56 >    uploadRelease ($opt{"format"}, $cmsswRelease, "$ARGV[1].tar.gz", $opt{"pyConfig"}, $ARGV[1], $ENV{"USER"}, $opt{"comment"});
57 >  }
58  
59   sub
60   addSlashes
# Line 43 | Line 72 | addSlashes
72   sub
73   getDataset
74   {
75 +  my $command = shift;
76    my $dataset = shift;
77  
78    my $results;
79 <  $db = Mysql->connect ("cmshead.mps.ohio-state.edu", "ntuple", "osuT3User");
80 <  my $query = "select id,user,creationTime from ntuple where dataset='$dataset' order by lastUpdateTime";
79 >  my $queryDataset = $dataset;
80 >  $queryDataset =~ s/\*/%/g;
81 >  $queryDataset =~ s/(.*)/%$1%/g;
82 >  my $query = "select id,dataset,user,creationTime from ntuple where dataset like '$queryDataset' order by lastUpdateTime";
83    $db->selectdb ("ntuple");
84    $results = $db->query ($query);
85    if ($results->numrows () == 1)
# Line 57 | Line 89 | getDataset
89      }
90    if ($results->numrows () == 0)
91      {
92 <      print "Database entry does not exist. Create it? (Y/n): ";
93 <      my $response = <STDIN>;
94 <      $response =~ s/\n//g;
95 <      $response = "y" if !$response;
96 <      exit if substr (lc ($response), 0, 1) ne 'y';
97 <      return -1;
92 >      if ($command ne "deleteEntry" && $command ne "deprecate")
93 >        {
94 >          print "Database entry does not exist. Create it? (Y/n): ";
95 >          my $response = <STDIN>;
96 >          $response =~ s/\n//g;
97 >          $response = "y" if !$response;
98 >          exit if substr (lc ($response), 0, 1) ne 'y';
99 >          return -1;
100 >        }
101 >      else
102 >        {
103 >          print "Database entry does not exist.\n";
104 >          exit;
105 >        }
106      }
107    my %map;
108    print "Found multiple database entries matching\n";
109    print "\"$dataset\":\n";
110 <  print "(0) new\n";
110 >  print "( 0) new\n" if $command ne "deleteEntry" && $command ne "deprecate";
111    for (my $i = 1; $i <= $results->numrows (); $i++)
112      {
113        my @row = $results->fetchrow ();
114        $map{"$i"} = $row[0];
115 <      print "($i) created by $row[1] on $row[2]\n";
115 >      printf "(%2d) $row[1]\n", $i;
116 >      print "     created by $row[2] on $row[3]\n";
117 >    }
118 >  print "\nWhich entry would you like to modify?";
119 >  if ($command ne "deleteEntry" && $command ne "deprecate")
120 >    {
121 >      print " (Select 0 to create a new entry): "
122 >    }
123 >  else
124 >    {
125 >      print ": ";
126      }
77  print "\nWhich entry would you like to update? (Select 0 to create a new entry): ";
127    my $response = <STDIN>;
128    $response =~ s/[ \t\n]//g;
129 <  return -1 if $response == 0;
129 >  return -1 if $response == 0 && $command ne "deleteEntry" && $command ne "deprecate";
130    if (!(exists $map{$response}))
131      {
132        print "Your selection \"$response\" was not a valid option! Quitting.\n";
# Line 95 | Line 144 | dbUpdate
144    my $user = shift;
145    my $format = shift;
146    my $location = shift;
147 <  my $remoteLocation = shift;
147 >  my $fileListName = shift;
148    my $status = shift;
149    my $comment = shift;
150    my $psetName = shift;
# Line 103 | Line 152 | dbUpdate
152    my $jsonFileName = shift;
153    my $lumiSummaryName = shift;
154  
155 +  my $fileList;
156    my $pset;
157    my $crabCfg;
158    my $jsonFile;
159    my $lumiSummary;
160    my $size = 0;
161    my $nFiles = 0;
162 +  if ($fileListName)
163 +    {
164 +      if (!(-e $fileListName))
165 +        {
166 +          print "$fileListName does not exist!\n";
167 +          exit;
168 +        }
169 +      open (FILE_LIST, "<$fileListName");
170 +      my @fileList = <FILE_LIST>;
171 +      close (FILE_LIST);
172 +      $fileList = join ("", @fileList);
173 +    }
174    if ($psetName)
175      {
176        if (!(-e $psetName))
# Line 157 | Line 219 | dbUpdate
219        close (LUMI_SUMMARY);
220        $lumiSummary = join ("", @lumiSummary);
221      }
222 <  if ($location)
161 <  {
162 <    if (!(-e $location))
163 <      {
164 <        print "$location does not exist!\n";
165 <        exit;
166 <      }
167 <     $nFiles = `ls $location | wc -l`;
168 <     $size = `du -s $location`;
169 <    $size =~ s/([^ ]*) .*/$1/;
170 <    $size /= 1024 * 1024;
171 <    $size = sprintf "%.2f", $size;
172 <  }
222 >  ($nFiles, $size) = sizeOfDataset ($dataset, $location, $fileList);
223  
224    $dataset = addSlashes ($dataset);
225    $user = addSlashes ($user);
# Line 179 | Line 229 | dbUpdate
229    $jsonFile = addSlashes ($jsonFile);
230    $lumiSummary = addSlashes ($lumiSummary);
231    $location = addSlashes ($location);
232 <  $remoteLocation = addSlashes ($remoteLocation);
232 >  $fileList = addSlashes ($fileList);
233    $status = addSlashes ($status);
234    $comment = addSlashes ($comment);
235  
# Line 187 | Line 237 | dbUpdate
237    my $query;
238    if ($id < 0)
239      {
190      $db = Mysql->connect ("cmshead.mps.ohio-state.edu", "ntuple", "osuT3User");
240        $query = "select max(id) from ntuple";
241        $db->selectdb ("ntuple");
242        $results = $db->query ($query);
# Line 195 | Line 244 | dbUpdate
244        my $id = 1;
245        $id = $row[0] + 1 if $results->numrows ();
246  
247 <      $query = "insert into ntuple (id, dataset, creationTime, lastUpdateTime, user, format, location, remoteLocation, nFiles, sizeInGB, status, comment, pset, crabCfg, jsonFile, lumiSummary) values ($id, '$dataset', now(), now(), '$user', '$format', '$location', '$remoteLocation', $nFiles, $size, '$status', '$comment', '$pset', '$crabCfg', '$jsonFile', '$lumiSummary')";
247 >      $query = "insert into ntuple (id, dataset, creationTime, lastUpdateTime, user, format, location, fileList, nFiles, sizeInGB, status, comment, pset, crabCfg, jsonFile, lumiSummary) values ($id, '$dataset', now(), now(), '$user', '$format', '$location', '$fileList', $nFiles, $size, '$status', '$comment', '$pset', '$crabCfg', '$jsonFile', '$lumiSummary')";
248      }
249    if ($id > 0)
250      {
# Line 206 | Line 255 | dbUpdate
255        $values .= ", lastUpdateTime=now()";
256        $values .= ", format='$format'" if $format;
257        $values .= ", location='$location'" if $location;
258 <      $values .= ", remoteLocation='$remoteLocation'" if $remoteLocation;
259 <      $values .= ", nFiles=$nFiles" if $location;
260 <      $values .= ", sizeInGB=$size" if $location;
258 >      $values .= ", fileList='$fileList'" if $fileList;
259 >      $values .= ", nFiles=$nFiles" if $nFiles;
260 >      $values .= ", sizeInGB=$size" if $size;
261        $values .= ", status='$status'" if $status;
262        $values .= ", comment='$comment'" if $comment;
263        $values .= ", pset='$pset'" if $pset;
# Line 225 | Line 274 | dbUpdate
274   }
275  
276   sub
277 + dbDelete
278 + {
279 +  my $id = shift;
280 +
281 +  return if $id < 0;
282 +  my $query = "delete from ntuple where id=$id";
283 +  $db->selectdb ("ntuple");
284 +  my $results = $db->query ($query);
285 + }
286 +
287 + sub
288   printHelp
289   {
290 +  my $command = shift;
291 +
292    my $exeName = $0;
293    $exeName =~ s/^.*\/([^\/]*)$/$1/;
294  
295 <  print "Usage: $exeName [OPTION]... COMMAND DATASET\n";
296 <  print "Manipulates entries in the OSU Tier 3 ntuple database.\n";
297 <  print "\n";
298 <  print "Mandatory arguments to long options are mandatory for short options too.\n";
299 <  printf "%-29s%s\n", "  -b, --crabCfg FILE", "CRAB config file used to submit the ntuple jobs";
300 <  printf "%-29s%s\n", "  -c, --comment COMMENT", "comment for this database entry";
301 <  printf "%-29s%s\n", "  -f, --format FORMAT", "ntuple format (default: BEAN)";
302 <  printf "%-29s%s\n", "  -j, --jsonFile FILE", "JSON file used to ntuplize the dataset";
303 <  printf "%-29s%s\n", "  -h, --help", "print this help message";
304 <  printf "%-29s%s\n", "  -l, --location DIRECTORY", "location on the Tier 3";
305 <  printf "%-29s%s\n", "  -p, --pyConfig FILE", "python config used to ntuplize the dataset";
306 <  printf "%-29s%s\n", "  -s, --lumiSummary FILE", "lumiSummary.json returned by CRAB";
307 <  print "\n";
308 <  print "COMMAND may be one of the following:\n";
309 <  printf "%-29s%s\n", "  create", "creates the entry (assumes the dataset is present)";
310 <  printf "%-29s%s\n", "  update", "updates the entry";
311 <  printf "%-29s%s\n", "  finish", "finalizes the database entry";
312 <  printf "%-29s%s\n", "  deprecate", "marks the dataset for deletion";
295 >  if ($command eq "create")
296 >    {
297 >      print "Usage: $exeName -l DIRECTORY [OPTION]... create NAME\n";
298 >      print "Creates an entry in the database for dataset NAME. The ntuples are assumed to\n";
299 >      print "be present on the Tier 3, with the status being set accordingly.\n";
300 >      print "\n";
301 >      print "Mandatory arguments to long options are mandatory for short options too.\n";
302 >      printf "%-29s%s\n", "  -b, --crabCfg FILE", "CRAB config used to submit ntuple jobs";
303 >      printf "%-29s%s\n", "  -c, --comment COMMENT", "comment for the database entry";
304 >      printf "%-29s%s\n", "  -f, --format FORMAT", "ntuple format (default: BEAN)";
305 >      printf "%-29s%s\n", "  -j, --jsonFile FILE", "JSON file used for this dataset";
306 >      printf "%-29s%s\n", "  -l, --location DIRECTORY", "directory containing the ntuples";
307 >      printf "%-29s%s\n", "  -p, --pyConfig FILE", "Python config used to produce ntuples";
308 >      printf "%-29s%s\n", "  -s, --lumiSummary FILE", "lumiSummary.json reported by CRAB";
309 >    }
310 >  elsif ($command eq "update")
311 >    {
312 >      print "Usage: $exeName [OPTION]... update NAME\n";
313 >      print "Updates an existing database entry for dataset NAME.\n";
314 >      print "\n";
315 >      print "Mandatory arguments to long options are mandatory for short options too.\n";
316 >      printf "%-29s%s\n", "  -b, --crabCfg FILE", "CRAB config used to submit ntuple jobs";
317 >      printf "%-29s%s\n", "  -c, --comment COMMENT", "comment for the database entry";
318 >      printf "%-29s%s\n", "  -f, --format FORMAT", "ntuple format";
319 >      printf "%-29s%s\n", "  -j, --jsonFile FILE", "JSON file used for this dataset";
320 >      printf "%-29s%s\n", "  -l, --location DIRECTORY", "directory containing the ntuples";
321 >      printf "%-29s%s\n", "  -p, --pyConfig FILE", "Python config used to produce ntuples";
322 >      printf "%-29s%s\n", "  -s, --lumiSummary FILE", "lumiSummary.json reported by CRAB";
323 >    }
324 >  elsif ($command eq "finish")
325 >    {
326 >      print "Usage: $exeName -l DIRECTORY finish NAME\n";
327 >
328 >      print "Finalizes the database entry for dataset NAME, changing its status to\n";
329 >      print "\"present\".  This is intended to be the final step in command-line based ntuple\n";
330 >      print "production.\n";
331 >      print "\n";
332 >      print "Mandatory arguments to long options are mandatory for short options too.\n";
333 >      printf "%-29s%s\n", "  -l, --location DIRECTORY", "directory containing the ntuples";
334 >    }
335 >  elsif ($command eq "deleteEntry")
336 >    {
337 >      print "Usage: $exeName deleteEntry NAME\n";
338 >      print "Deletes the database entry for dataset NAME. This is intended primarily for\n";
339 >      print "mistaken database entries. If you wish to actually delete a set of ntuples,\n";
340 >      print "please use the \"deprecate\" command instead.\n";
341 >    }
342 >  elsif ($command eq "deprecate")
343 >    {
344 >      print "Usage: $exeName deprecate NAME\n";
345 >      print "Marks the dataset NAME for deletion. WARNING: The dataset will be deleted from\n";
346 >      print "the Tier 3 within one week of this action. If you wish to simply delete a\n";
347 >      print "mistaken database entry, use the \"deleteEntry\" command instead.\n";
348 >    }
349 >  elsif ($command eq "uploadRelease")
350 >    {
351 >      print "Usage: $exeName -p FILE -r DIRECTORY [OPTION]... uploadRelease NAME\n";
352 >      print "Copies an ntuple release to the appropriate area on the Tier 3, and creates a\n";
353 >      print "database entry for it, with NAME being the name of the release. An ntuple\n";
354 >      print "release is a CMSSW release with all the necessary packages added for creating\n";
355 >      print "ntuples, along with a default Python config file.\n";
356 >      print "\n";
357 >      print "Mandatory arguments to long options are mandatory for short options too.\n";
358 >      printf "%-29s%s\n", "  -c, --comment COMMENT", "comment for the database entry";
359 >      printf "%-29s%s\n", "  -f, --format FORMAT", "ntuple format (default: BEAN)";
360 >      printf "%-29s%s\n", "  -p, --pyConfig FILE", "default Python config for the release";
361 >      printf "%-29s%s\n", "  -r, --release DIRECTORY", "CMSSW release containing ntuple packages";
362 >    }
363 >  else
364 >    {
365 >      print "Usage: $exeName [OPTION]... COMMAND NAME\n";
366 >      print "Manipulates entry in the OSU Tier 3 ntuple database given by NAME.\n";
367 >      print "\n";
368 >      print "Mandatory arguments to long options are mandatory for short options too.\n";
369 >      printf "%-29s%s\n", "  -h, --help", "print help. If COMMAND is present, print help";
370 >      printf "%-29s%s\n", " ", "specific to COMMAND.";
371 >      print "\n";
372 >      print "COMMAND may be one of the following:\n";
373 >      printf "%-29s%s\n", "  create", "creates the entry";
374 >      printf "%-29s%s\n", "  update", "updates the entry";
375 >      printf "%-29s%s\n", "  finish", "finalizes the database entry";
376 >      printf "%-29s%s\n", "  deleteEntry", "removes the database entry";
377 >      printf "%-29s%s\n", "  deprecate", "marks the dataset for deletion";
378 >      printf "%-29s%s\n", "  uploadRelease", "upload an ntuple release";
379 >    }
380  
381    exit;
382   }
383 +
384 + sub
385 + sizeOfDataset
386 + {
387 +  my $dataset = shift;
388 +  my $location = shift;
389 +  my $fileList = shift;
390 +
391 +  my $query = "select nFiles from ntuple where dataset='$dataset'";
392 +  $db->selectdb ("ntuple");
393 +  my $results = $db->query ($query);
394 +  my @row = $results->fetchrow ();
395 +  my $previousNFiles = 0;
396 +  $previousNFiles = $row[0] if $results->numrows ();
397 +
398 +  my $size = 0.0;
399 +  my $nFiles = 0;
400 +  if ($location && !$fileList && $previousNFiles < 1)
401 +    {
402 +      if (!(-e $location))
403 +        {
404 +          print "$location does not exist!\n";
405 +          exit;
406 +        }
407 +      $nFiles = `ls $location | wc -l`;
408 +      $size = `du -s $location`;
409 +      $size =~ s/([^ ]*) .*/$1/;
410 +      $size /= 1024 * 1024;
411 +      $size = sprintf "%.2f", $size;
412 +    }
413 +  elsif ($fileList)
414 +    {
415 +      foreach my $file (split (/\n/, $fileList))
416 +        {
417 +          $nFiles++;
418 +          my $fileSize = `du -s $file`;
419 +          $fileSize =~ s/([^ ]*) .*/$1/;
420 +          $size += $fileSize;
421 +        }
422 +      $size /= 1024 * 1024;
423 +      $size = sprintf "%.2f", $size;
424 +    }
425 +
426 +  return ($nFiles, $size);
427 + }
428 +
429 + sub
430 + uploadRelease
431 + {
432 +  my $format = shift;
433 +  my $cmsswRelease = shift;
434 +  my $release = shift;
435 +  my $psetName = shift;
436 +  my $name = shift;
437 +  my $user = shift;
438 +  my $comment = shift;
439 +
440 +  move ($release, "/home/hart/public_html/releases/$name.tar.gz") or die "Ntuple releases may only be uploaded on the Tier 3, stopped";
441 +  if (!(-e $psetName))
442 +    {
443 +      print "$psetName does not exist!\n";
444 +      exit;
445 +    }
446 +  open (PY_CONFIG, "<$psetName");
447 +  my @pset = <PY_CONFIG>;
448 +  close (PY_CONFIG);
449 +  my $pset = join ("", @pset);
450 +
451 +  my $query = "select max(id) from ntupleRelease";
452 +  $db->selectdb ("ntuple");
453 +  my $results = $db->query ($query);
454 +  my @row = $results->fetchrow ();
455 +  my $id = 1;
456 +  $id = $row[0] + 1 if $results->numrows ();
457 +
458 +  $name = addSlashes ($name);
459 +  $pset = addSlashes ($pset);
460 +  $user = addSlashes ($user);
461 +  $format = addSlashes ($format);
462 +  $cmsswRelease = addSlashes ($cmsswRelease);
463 +  $comment = addSlashes ($comment);
464 +
465 +  my $query = "insert into ntupleRelease (id, name, pset, user, pending, format, cmsswRelease, comment) values ($id, '$name', '$pset', '$user', 1, '$format', '$cmsswRelease', '$comment')";
466 +  $db->selectdb ("ntuple");
467 +  my $results = $db->query ($query);
468 + }

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