| 1 |
#!/usr/bin/env perl
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| 2 |
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| 3 |
use strict;
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| 4 |
use Mysql;
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| 5 |
use Getopt::Long;
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use File::Copy;
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| 8 |
sub getDataset;
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| 9 |
sub dbUpdate;
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sub dbDelete;
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sub addSlashes;
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sub uploadRelease;
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our $db = Mysql->connect ("cmshead.mps.ohio-state.edu", "ntuple", "osuT3User") or die "Failed to connect to Tier 3, stopped";
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my %opt;
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Getopt::Long::Configure ("bundling");
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GetOptions (\%opt, "comment|c=s", "format|f=s", "pyConfig|p=s", "crabCfg|b=s", "jsonFile|j=s", "lumiSummary|s=s", "location|l=s", "fileList|t=s", "release|r=s", "help|h");
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my $argc = @ARGV;
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printHelp ($ARGV[0]) if $opt{"help"};
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printHelp () if $argc != 2;
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printHelp () if $ARGV[0] ne "create" && $ARGV[0] ne "update" && $ARGV[0] ne "finish" && $ARGV[0] ne "deprecate" && $ARGV[0] ne "uploadRelease" && $ARGV[0] ne "deleteEntry";
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| 24 |
if (($ARGV[0] eq "create" || $ARGV[0] eq "finish") && !$opt{"location"})
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{
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print "The directory containing the ntuples must be given!\n";
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exit;
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}
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if ($ARGV[0] eq "uploadRelease" && !$opt{"pyConfig"} && !$opt{"release"})
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{
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print "Both the Python and the CMSSW release must be given!\n";
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exit;
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}
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| 34 |
if ($ARGV[0] ne "uploadRelease")
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{
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my $id = -1;
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my $fullDataset;
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| 38 |
($id, $fullDataset) = getDataset ($ARGV[0], $ARGV[1]) if $ARGV[0] ne "create";
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$fullDataset = $ARGV[1] if $id < 0;
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$ARGV[0] = "create" if $id < 0;
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my $status = "present";
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$status = "" if $ARGV[0] eq "update";
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$status = "deprecated" if $ARGV[0] eq "deprecate";
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$opt{"format"} = "BEAN" if $ARGV[0] eq "create" && !$opt{"format"};
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dbUpdate ($id, $fullDataset, $ENV{"USER"}, $opt{"format"}, $opt{"location"}, $opt{"fileList"}, $status, $opt{"comment"}, $opt{"pyConfig"}, $opt{"crabCfg"}, $opt{"jsonFile"}, $opt{"lumiSummary"}, $opt{"release"});
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dbDelete ($id) if $ARGV[0] eq "deleteEntry";
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}
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else
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{
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| 50 |
my $parentDir = "./$opt{'release'}";
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$parentDir =~ s/CMSSW_[^\/]*//g;
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$parentDir =~ s/\/\/*/\//g;
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my $cmsswRelease = $opt{'release'};
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$cmsswRelease =~ s/^.*CMSSW_([^\/]*).*$/CMSSW_$1/;
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`tar -C $parentDir -czf $ARGV[1].tar.gz $opt{"release"}`;
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$opt{"format"} = "BEAN" if !$opt{"format"};
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uploadRelease ($opt{"format"}, $cmsswRelease, "$ARGV[1].tar.gz", $opt{"pyConfig"}, $ARGV[1], $ENV{"USER"}, $opt{"comment"});
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}
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sub
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addSlashes
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{
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my $string = shift;
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| 65 |
$string =~ s/\\/\\\\/g;
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$string =~ s/'/\\'/g;
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| 67 |
$string =~ s/"/\\"/g;
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$string =~ s/\\0/\\\\0/g;
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return $string;
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}
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sub
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getDataset
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{
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my $command = shift;
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my $dataset = shift;
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| 79 |
my $results;
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my $queryDataset = $dataset;
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$queryDataset =~ s/\*/%/g;
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| 82 |
$queryDataset =~ s/(.*)/%$1%/g;
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my $query = "select id,dataset,user,creationTime from ntuple where dataset like '$queryDataset' order by lastUpdateTime";
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$db->selectdb ("ntuple");
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$results = $db->query ($query);
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if ($results->numrows () == 1)
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{
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my @row = $results->fetchrow ();
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return ($row[0], $row[1]);
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}
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if ($results->numrows () == 0)
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{
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if ($command ne "deleteEntry" && $command ne "deprecate")
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{
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print "Database entry does not exist. Create it? (Y/n): ";
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my $response = <STDIN>;
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$response =~ s/\n//g;
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$response = "y" if !$response;
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exit if substr (lc ($response), 0, 1) ne 'y';
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return (-1, "");
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}
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else
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{
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print "Database entry does not exist.\n";
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exit;
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}
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}
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my %id;
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my %fullDataset;
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print "Found multiple database entries matching\n";
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print "\"$dataset\":\n";
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print "( 0) new\n" if $command ne "deleteEntry" && $command ne "deprecate";
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for (my $i = 1; $i <= $results->numrows (); $i++)
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{
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my @row = $results->fetchrow ();
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$id{"$i"} = $row[0];
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$fullDataset{"$i"} = $row[1];
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printf "(%2d) $row[1]\n", $i;
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print " created by $row[2] on $row[3]\n";
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}
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print "\nWhich entry would you like to modify?";
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if ($command ne "deleteEntry" && $command ne "deprecate")
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{
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print " (Select 0 to create a new entry): "
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}
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else
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{
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print ": ";
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}
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my $response = <STDIN>;
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$response =~ s/[ \t\n]//g;
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return (-1, "") if $response == 0 && $command ne "deleteEntry" && $command ne "deprecate";
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if (!(exists $id{$response}))
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{
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print "Your selection \"$response\" was not a valid option! Quitting.\n";
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exit;
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}
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return ($id{$response}, $fullDataset{$response});
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}
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sub
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dbUpdate
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{
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my $id = shift;
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my $dataset = shift;
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my $user = shift;
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my $format = shift;
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| 149 |
my $location = shift;
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| 150 |
my $fileListName = shift;
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my $status = shift;
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my $comment = shift;
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my $psetName = shift;
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my $crabCfgName = shift;
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my $jsonFileName = shift;
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my $lumiSummaryName = shift;
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my $release = shift;
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my $fileList;
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my $pset;
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my $crabCfg;
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my $jsonFile;
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my $lumiSummary;
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my $size = 0;
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my $nFiles = 0;
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if ($fileListName)
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{
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if (!(-e $fileListName))
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{
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print "$fileListName does not exist!\n";
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exit;
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}
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open (FILE_LIST, "<$fileListName");
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my @fileList = <FILE_LIST>;
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close (FILE_LIST);
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$fileList = join ("", @fileList);
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}
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| 178 |
if ($psetName)
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{
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| 180 |
if (!(-e $psetName))
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{
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| 182 |
print "$psetName does not exist!\n";
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exit;
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}
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open (PY_CONFIG, "<$psetName");
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my @pset = <PY_CONFIG>;
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close (PY_CONFIG);
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$pset = join ("", @pset);
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}
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if ($crabCfgName)
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{
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if (!(-e $crabCfgName))
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{
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print "$crabCfgName does not exist!\n";
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exit;
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}
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open (CRAB_CONFIG, "<$crabCfgName");
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my @crabCfg = <CRAB_CONFIG>;
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close (CRAB_CONFIG);
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$crabCfg = join ("", @crabCfg);
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}
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if ($jsonFileName)
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{
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if (!(-e $jsonFileName))
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{
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print "$jsonFileName does not exist!\n";
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exit;
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}
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open (JSON_FILE, "<$jsonFileName");
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my @jsonFile = <JSON_FILE>;
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close (JSON_FILE);
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$jsonFile = join ("", @jsonFile);
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}
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if ($lumiSummaryName)
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{
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if (!(-e $lumiSummaryName))
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{
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print "$lumiSummaryName does not exist!\n";
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exit;
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}
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open (LUMI_SUMMARY, "<$lumiSummaryName");
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my @lumiSummary = <LUMI_SUMMARY>;
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close (LUMI_SUMMARY);
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$lumiSummary = join ("", @lumiSummary);
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}
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if ($release)
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{
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my $query = "select id from ntupleRelease where name='$release'";
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$db->selectdb ("ntuple");
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my $results = $db->query ($query);
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if ($results->numrows () != 1)
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{
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print "Ntuple release \"$release\" not found!\n";
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exit;
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}
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}
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($nFiles, $size) = sizeOfDataset ($dataset, $location, $fileList);
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| 238 |
my $fullLocation = $location;
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$fullLocation = "$ENV{'PWD'}/$location" if !($location =~ m/^\//);
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$dataset = addSlashes ($dataset);
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$user = addSlashes ($user);
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$format = addSlashes ($format);
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$pset = addSlashes ($pset);
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$crabCfg = addSlashes ($crabCfg);
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$jsonFile = addSlashes ($jsonFile);
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$lumiSummary = addSlashes ($lumiSummary);
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$fullLocation = addSlashes ($fullLocation);
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$fileList = addSlashes ($fileList);
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$status = addSlashes ($status);
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$comment = addSlashes ($comment);
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$release = addSlashes ($release);
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my $results;
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my $query;
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| 256 |
if ($id < 0)
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{
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| 258 |
$query = "select max(id) from ntuple";
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$db->selectdb ("ntuple");
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| 260 |
$results = $db->query ($query);
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| 261 |
my @row = $results->fetchrow ();
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| 262 |
my $id = 1;
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$id = $row[0] + 1 if $results->numrows ();
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| 264 |
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| 265 |
$query = "insert into ntuple (id, dataset, creationTime, lastUpdateTime, user, format, location, fileList, nFiles, sizeInGB, status, comment, pset, crabCfg, jsonFile, lumiSummary, version) values ($id, '$dataset', now(), now(), '$user', '$format', '$fullLocation', '$fileList', $nFiles, $size, '$status', '$comment', '$pset', '$crabCfg', '$jsonFile', '$lumiSummary', '$release')";
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}
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| 267 |
if ($id > 0)
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| 268 |
{
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| 269 |
my $fields;
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| 270 |
my $values;
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| 271 |
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| 272 |
$values .= ", dataset='$dataset'" if $dataset;
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| 273 |
$values .= ", lastUpdateTime=now()";
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| 274 |
$values .= ", format='$format'" if $format;
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| 275 |
$values .= ", location='$fullLocation'" if $location;
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| 276 |
$values .= ", fileList='$fileList'" if $fileList;
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| 277 |
$values .= ", nFiles=$nFiles" if $nFiles;
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| 278 |
$values .= ", sizeInGB=$size" if $size;
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| 279 |
$values .= ", status='$status'" if $status;
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| 280 |
$values .= ", comment='$comment'" if $comment;
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| 281 |
$values .= ", pset='$pset'" if $pset;
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| 282 |
$values .= ", crabCfg='$crabCfg'" if $crabCfg;
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| 283 |
$values .= ", jsonFile='$jsonFile'" if $jsonFile;
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| 284 |
$values .= ", lumiSummary='$lumiSummary'" if $lumiSummary;
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| 285 |
$values .= ", version='$release'" if $release;
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| 286 |
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| 287 |
$values =~ s/^, //;
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| 288 |
$query = "update ntuple set $values where id=$id";
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| 289 |
}
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| 290 |
$results = $db->query ($query);
|
| 291 |
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| 292 |
return $results;
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| 293 |
}
|
| 294 |
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| 295 |
sub
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| 296 |
dbDelete
|
| 297 |
{
|
| 298 |
my $id = shift;
|
| 299 |
|
| 300 |
return if $id < 0;
|
| 301 |
my $query = "delete from ntuple where id=$id";
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| 302 |
$db->selectdb ("ntuple");
|
| 303 |
my $results = $db->query ($query);
|
| 304 |
}
|
| 305 |
|
| 306 |
sub
|
| 307 |
printHelp
|
| 308 |
{
|
| 309 |
my $command = shift;
|
| 310 |
|
| 311 |
my $exeName = $0;
|
| 312 |
$exeName =~ s/^.*\/([^\/]*)$/$1/;
|
| 313 |
|
| 314 |
if ($command eq "create")
|
| 315 |
{
|
| 316 |
print "Usage: $exeName -l DIRECTORY [OPTION]... create NAME\n";
|
| 317 |
print "Creates an entry in the database for dataset NAME. The ntuples are assumed to\n";
|
| 318 |
print "be present on the Tier 3, with the status being set accordingly.\n";
|
| 319 |
print "\n";
|
| 320 |
print "Mandatory arguments to long options are mandatory for short options too.\n";
|
| 321 |
printf "%-29s%s\n", " -b, --crabCfg FILE", "CRAB config used to submit ntuple jobs";
|
| 322 |
printf "%-29s%s\n", " -c, --comment COMMENT", "comment for the database entry";
|
| 323 |
printf "%-29s%s\n", " -f, --format FORMAT", "ntuple format (default: BEAN)";
|
| 324 |
printf "%-29s%s\n", " -j, --jsonFile FILE", "JSON file used for this dataset";
|
| 325 |
printf "%-29s%s\n", " -l, --location DIRECTORY", "directory containing the ntuples";
|
| 326 |
printf "%-29s%s\n", " -p, --pyConfig FILE", "Python config used to produce ntuples";
|
| 327 |
printf "%-29s%s\n", " -r, --release NAME", "ntuple release used to produce ntuples";
|
| 328 |
printf "%-29s%s\n", " -s, --lumiSummary FILE", "lumiSummary.json reported by CRAB";
|
| 329 |
}
|
| 330 |
elsif ($command eq "update")
|
| 331 |
{
|
| 332 |
print "Usage: $exeName [OPTION]... update NAME\n";
|
| 333 |
print "Updates an existing database entry for dataset NAME.\n";
|
| 334 |
print "\n";
|
| 335 |
print "Mandatory arguments to long options are mandatory for short options too.\n";
|
| 336 |
printf "%-29s%s\n", " -b, --crabCfg FILE", "CRAB config used to submit ntuple jobs";
|
| 337 |
printf "%-29s%s\n", " -c, --comment COMMENT", "comment for the database entry";
|
| 338 |
printf "%-29s%s\n", " -f, --format FORMAT", "ntuple format";
|
| 339 |
printf "%-29s%s\n", " -j, --jsonFile FILE", "JSON file used for this dataset";
|
| 340 |
printf "%-29s%s\n", " -l, --location DIRECTORY", "directory containing the ntuples";
|
| 341 |
printf "%-29s%s\n", " -p, --pyConfig FILE", "Python config used to produce ntuples";
|
| 342 |
printf "%-29s%s\n", " -r, --release NAME", "ntuple release used to produce ntuples";
|
| 343 |
printf "%-29s%s\n", " -s, --lumiSummary FILE", "lumiSummary.json reported by CRAB";
|
| 344 |
}
|
| 345 |
elsif ($command eq "finish")
|
| 346 |
{
|
| 347 |
print "Usage: $exeName -l DIRECTORY finish NAME\n";
|
| 348 |
|
| 349 |
print "Finalizes the database entry for dataset NAME, changing its status to\n";
|
| 350 |
print "\"present\". This is intended to be the final step in command-line based ntuple\n";
|
| 351 |
print "production.\n";
|
| 352 |
print "\n";
|
| 353 |
print "Mandatory arguments to long options are mandatory for short options too.\n";
|
| 354 |
printf "%-29s%s\n", " -l, --location DIRECTORY", "directory containing the ntuples";
|
| 355 |
}
|
| 356 |
elsif ($command eq "deleteEntry")
|
| 357 |
{
|
| 358 |
print "Usage: $exeName deleteEntry NAME\n";
|
| 359 |
print "Deletes the database entry for dataset NAME. This is intended primarily for\n";
|
| 360 |
print "mistaken database entries. If you wish to actually delete a set of ntuples,\n";
|
| 361 |
print "please use the \"deprecate\" command instead.\n";
|
| 362 |
}
|
| 363 |
elsif ($command eq "deprecate")
|
| 364 |
{
|
| 365 |
print "Usage: $exeName deprecate NAME\n";
|
| 366 |
print "Marks the dataset NAME for deletion. WARNING: The dataset will be deleted from\n";
|
| 367 |
print "the Tier 3 within one week of this action. If you wish to simply delete a\n";
|
| 368 |
print "mistaken database entry, use the \"deleteEntry\" command instead.\n";
|
| 369 |
}
|
| 370 |
elsif ($command eq "uploadRelease")
|
| 371 |
{
|
| 372 |
print "Usage: $exeName -p FILE -r DIRECTORY [OPTION]... uploadRelease NAME\n";
|
| 373 |
print "Copies an ntuple release to the appropriate area on the Tier 3, and creates a\n";
|
| 374 |
print "database entry for it, with NAME being the name of the release. An ntuple\n";
|
| 375 |
print "release is a CMSSW release with all the necessary packages added for creating\n";
|
| 376 |
print "ntuples, along with a default Python config file.\n";
|
| 377 |
print "\n";
|
| 378 |
print "Mandatory arguments to long options are mandatory for short options too.\n";
|
| 379 |
printf "%-29s%s\n", " -c, --comment COMMENT", "comment for the database entry";
|
| 380 |
printf "%-29s%s\n", " -f, --format FORMAT", "ntuple format (default: BEAN)";
|
| 381 |
printf "%-29s%s\n", " -p, --pyConfig FILE", "default Python config for the release";
|
| 382 |
printf "%-29s%s\n", " -r, --release DIRECTORY", "CMSSW release containing ntuple packages";
|
| 383 |
}
|
| 384 |
else
|
| 385 |
{
|
| 386 |
print "Usage: $exeName [OPTION]... COMMAND NAME\n";
|
| 387 |
print "Manipulates entry in the OSU Tier 3 ntuple database given by NAME.\n";
|
| 388 |
print "\n";
|
| 389 |
print "Mandatory arguments to long options are mandatory for short options too.\n";
|
| 390 |
printf "%-29s%s\n", " -h, --help", "print help. If COMMAND is present, print help";
|
| 391 |
printf "%-29s%s\n", " ", "specific to COMMAND.";
|
| 392 |
print "\n";
|
| 393 |
print "COMMAND may be one of the following:\n";
|
| 394 |
printf "%-29s%s\n", " create", "creates the entry";
|
| 395 |
printf "%-29s%s\n", " update", "updates the entry";
|
| 396 |
printf "%-29s%s\n", " finish", "finalizes the database entry";
|
| 397 |
printf "%-29s%s\n", " deleteEntry", "removes the database entry";
|
| 398 |
printf "%-29s%s\n", " deprecate", "marks the dataset for deletion";
|
| 399 |
printf "%-29s%s\n", " uploadRelease", "upload an ntuple release";
|
| 400 |
}
|
| 401 |
|
| 402 |
exit;
|
| 403 |
}
|
| 404 |
|
| 405 |
sub
|
| 406 |
sizeOfDataset
|
| 407 |
{
|
| 408 |
my $dataset = shift;
|
| 409 |
my $location = shift;
|
| 410 |
my $fileList = shift;
|
| 411 |
|
| 412 |
my $size = 0.0;
|
| 413 |
my $nFiles = 0;
|
| 414 |
if ($location && !$fileList)
|
| 415 |
{
|
| 416 |
if (!(-e $location))
|
| 417 |
{
|
| 418 |
print "$location does not exist!\n";
|
| 419 |
exit;
|
| 420 |
}
|
| 421 |
$nFiles = `ls $location | wc -l`;
|
| 422 |
$size = `du -s $location`;
|
| 423 |
$size =~ s/([^ ]*) .*/$1/;
|
| 424 |
$size /= 1024 * 1024;
|
| 425 |
$size = sprintf "%.2f", $size;
|
| 426 |
}
|
| 427 |
elsif ($fileList)
|
| 428 |
{
|
| 429 |
foreach my $file (split (/\n/, $fileList))
|
| 430 |
{
|
| 431 |
$nFiles++;
|
| 432 |
my $fileSize = `du -s $file`;
|
| 433 |
$fileSize =~ s/([^ ]*) .*/$1/;
|
| 434 |
$size += $fileSize;
|
| 435 |
}
|
| 436 |
$size /= 1024 * 1024;
|
| 437 |
$size = sprintf "%.2f", $size;
|
| 438 |
}
|
| 439 |
|
| 440 |
return ($nFiles, $size);
|
| 441 |
}
|
| 442 |
|
| 443 |
sub
|
| 444 |
uploadRelease
|
| 445 |
{
|
| 446 |
my $format = shift;
|
| 447 |
my $cmsswRelease = shift;
|
| 448 |
my $release = shift;
|
| 449 |
my $psetName = shift;
|
| 450 |
my $name = shift;
|
| 451 |
my $user = shift;
|
| 452 |
my $comment = shift;
|
| 453 |
|
| 454 |
move ($release, "/home/hart/public_html/releases/$name.tar.gz") or die "Ntuple releases may only be uploaded on the Tier 3, stopped";
|
| 455 |
if (!(-e $psetName))
|
| 456 |
{
|
| 457 |
print "$psetName does not exist!\n";
|
| 458 |
exit;
|
| 459 |
}
|
| 460 |
open (PY_CONFIG, "<$psetName");
|
| 461 |
my @pset = <PY_CONFIG>;
|
| 462 |
close (PY_CONFIG);
|
| 463 |
my $pset = join ("", @pset);
|
| 464 |
|
| 465 |
my $query = "select max(id) from ntupleRelease";
|
| 466 |
$db->selectdb ("ntuple");
|
| 467 |
my $results = $db->query ($query);
|
| 468 |
my @row = $results->fetchrow ();
|
| 469 |
my $id = 1;
|
| 470 |
$id = $row[0] + 1 if $results->numrows ();
|
| 471 |
|
| 472 |
$name = addSlashes ($name);
|
| 473 |
$pset = addSlashes ($pset);
|
| 474 |
$user = addSlashes ($user);
|
| 475 |
$format = addSlashes ($format);
|
| 476 |
$cmsswRelease = addSlashes ($cmsswRelease);
|
| 477 |
$comment = addSlashes ($comment);
|
| 478 |
|
| 479 |
my $query = "insert into ntupleRelease (id, name, pset, user, pending, format, cmsswRelease, comment) values ($id, '$name', '$pset', '$user', 1, '$format', '$cmsswRelease', '$comment')";
|
| 480 |
$db->selectdb ("ntuple");
|
| 481 |
my $results = $db->query ($query);
|
| 482 |
}
|
