VHbb/python/runAll.sh

#!/bin/bash

#Input argument:
#sample you want to run on. It has to match the naming in sample.info.
sample=$1
#sqrt(s) you want to run
energy=$2

task=$3

if [ $# -lt 3 ]
    then
    echo "ERROR: You passed " $# "arguments while the script needs at least 3 arguments."
    echo "Exiting..."
    echo " ---------------------------------- "
    echo " Usage : ./runAll.sh sample energy task"
    echo " ---------------------------------- "
    exit
fi

#Set the environment for the batch job execution

#cd /shome/peller/CMSSW_5_2_4_patch4/src/
# this doesnt work for me..?

#cd $CMSSW_BASE/src/
#source /swshare/psit3/etc/profile.d/cms_ui_env.sh
#export SCRAM_ARCH="slc5_amd64_gcc462"
#source $VO_CMS_SW_DIR/cmsset_default.sh
#eval `scramv1 runtime -sh`
#export LD_LIBRARY_PATH=/swshare/glite/d-cache/dcap/lib/:$LD_LIBRARY_PATH


#source /swshare/psit3/etc/profile.d/cms_ui_env.sh
export LD_LIBRARY_PATH=/swshare/glite/d-cache/dcap/lib/:$LD_LIBRARY_PATH
#export SCRAM_ARCH="slc5_amd64_gcc462"
#source $VO_CMS_SW_DIR/cmsset_default.sh
#eval `scramv1 runtime -sh`
source /swshare/ROOT/root_v5.30.01_slc5_amd64/bin/thisroot.sh

mkdir $TMPDIR

printenv

#Path where the script write_regression_systematic.py and evaluateMVA.py are stored
#execute=$PWD/UserCode/VHbb/python/
#execute=/shome/peller/UserCode/VHbb/python/
#cd $execute

#back to the working dir
cd -

#Parsing the path form the config
pathAna=`python << EOF 
import os
from BetterConfigParser import BetterConfigParser
config = BetterConfigParser()
config.read('./pathConfig$energy')
print config.get('Directories','samplepath')
EOF`
echo $pathAna
configFile=config$energy

storagesamples=`python << EOF 
import os
from BetterConfigParser import BetterConfigParser
config = BetterConfigParser()
config.read('./pathConfig$energy')
print config.get('Directories','storagesamples')
EOF`


MVAList=`python << EOF 
import os
from BetterConfigParser import BetterConfigParser
config = BetterConfigParser()
config.read('./config$energy')
print config.get('MVALists','List_for_submitscript')
EOF`
configFile=config$energy


#Create subdirs where processed samples will be stored
if [ ! -d $pathAna/env ]
    then
    mkdir $pathAna/env
fi
if [ ! -d $pathAna/env/sys ]
    then
    mkdir $pathAna/env/sys
fi
if [ ! -d $pathAna/env/sys/MVAout ]
    then
    mkdir $pathAna/env/sys/MVAout
fi

#Run the scripts

if [ $task = "prep" ]; then
    ./prepare_environment_with_config.py -I $storagesamples -O $pathAna/env/ -C ${energy}samples_nosplit.cfg
fi
if [ $task = "sys" ]; then
    ./write_regression_systematics.py -P $pathAna/env/ -S $sample -C $configFile -C pathConfig$energy
fi
if [ $task = "eval" ]; then
    ./evaluateMVA.py -D $MVAList -S $sample -U 0 -C ${configFile} -C pathConfig$energy
fi
if [ $task = "syseval" ]; then
    ./write_regression_systematics.py -P $pathAna/env/ -S $sample -C $configFile -C pathConfig$energy
    ./evaluateMVA.py -P $pathAna/env/sys/ -D $MVAList -S $sample -U 0 -C ${configFile} -C pathConfig$energy
fi
if [ $task = "plot" ]; then
    ./tree_stack.py -P $pathAna/env/sys/MVAout/ -C ${configFile} -C pathConfig$energy -R $sample
fi
if [ $task = "dc" ]; then
    ./workspace_datacard.py -P $pathAna/env/sys/MVAout/ -C ${configFile} -C pathConfig$energy -V $sample 
fi

rm -rf $TMPDIR
Revision:	1.17
Committed:	Tue Nov 27 10:51:03 2012 UTC (12 years, 5 months ago) by peller
Content type:	application/x-sh
Branch:	MAIN
Changes since 1.16:	+27 -9 lines
Log Message:	run on SE read and write
#	User	Rev	Content
1	bortigno	1.5	#!/bin/bash
2
3			#Input argument:
4			#sample you want to run on. It has to match the naming in sample.info.
5	nmohr	1.1	sample=$1
6	bortigno	1.5	#sqrt(s) you want to run
7	nmohr	1.4	energy=$2
8	bortigno	1.5
9	peller	1.9	task=$3
10
11			if [ $# -lt 3 ]
12	bortigno	1.7	then
13	peller	1.9	echo "ERROR: You passed " $# "arguments while the script needs at least 3 arguments."
14	bortigno	1.7	echo "Exiting..."
15			echo " ---------------------------------- "
16	peller	1.9	echo " Usage : ./runAll.sh sample energy task"
17	bortigno	1.7	echo " ---------------------------------- "
18			exit
19			fi
20
21	bortigno	1.5	#Set the environment for the batch job execution
22	peller	1.8
23			#cd /shome/peller/CMSSW_5_2_4_patch4/src/
24			# this doesnt work for me..?
25	peller	1.17
26			#cd $CMSSW_BASE/src/
27			#source /swshare/psit3/etc/profile.d/cms_ui_env.sh
28			#export SCRAM_ARCH="slc5_amd64_gcc462"
29			#source $VO_CMS_SW_DIR/cmsset_default.sh
30			#eval `scramv1 runtime -sh`
31			#export LD_LIBRARY_PATH=/swshare/glite/d-cache/dcap/lib/:$LD_LIBRARY_PATH
32
33
34			#source /swshare/psit3/etc/profile.d/cms_ui_env.sh
35	nmohr	1.16	export LD_LIBRARY_PATH=/swshare/glite/d-cache/dcap/lib/:$LD_LIBRARY_PATH
36	peller	1.17	#export SCRAM_ARCH="slc5_amd64_gcc462"
37			#source $VO_CMS_SW_DIR/cmsset_default.sh
38			#eval `scramv1 runtime -sh`
39			source /swshare/ROOT/root_v5.30.01_slc5_amd64/bin/thisroot.sh
40	peller	1.15
41			mkdir $TMPDIR
42	bortigno	1.5
43	peller	1.17	printenv
44
45	bortigno	1.5	#Path where the script write_regression_systematic.py and evaluateMVA.py are stored
46			#execute=$PWD/UserCode/VHbb/python/
47	peller	1.8	#execute=/shome/peller/UserCode/VHbb/python/
48	bortigno	1.7	#cd $execute
49	bortigno	1.5
50			#back to the working dir
51	bortigno	1.7	cd -
52	bortigno	1.5
53			#Parsing the path form the config
54	nmohr	1.4	pathAna=`python << EOF
55			import os
56			from BetterConfigParser import BetterConfigParser
57			config = BetterConfigParser()
58			config.read('./pathConfig$energy')
59			print config.get('Directories','samplepath')
60			EOF`
61			echo $pathAna
62			configFile=config$energy
63	bortigno	1.5
64	peller	1.17	storagesamples=`python << EOF
65			import os
66			from BetterConfigParser import BetterConfigParser
67			config = BetterConfigParser()
68			config.read('./pathConfig$energy')
69			print config.get('Directories','storagesamples')
70			EOF`
71
72
73	peller	1.9	MVAList=`python << EOF
74			import os
75			from BetterConfigParser import BetterConfigParser
76			config = BetterConfigParser()
77			config.read('./config$energy')
78			print config.get('MVALists','List_for_submitscript')
79			EOF`
80			configFile=config$energy
81
82
83	bortigno	1.5	#Create subdirs where processed samples will be stored
84	bortigno	1.10	if [ ! -d $pathAna/env ]
85			then
86			mkdir $pathAna/env
87			fi
88	bortigno	1.5	if [ ! -d $pathAna/env/sys ]
89			then
90			mkdir $pathAna/env/sys
91			fi
92	bortigno	1.7	if [ ! -d $pathAna/env/sys/MVAout ]
93	bortigno	1.5	then
94			mkdir $pathAna/env/sys/MVAout
95			fi
96
97			#Run the scripts
98	peller	1.9
99			if [ $task = "prep" ]; then
100	peller	1.17	./prepare_environment_with_config.py -I $storagesamples -O $pathAna/env/ -C ${energy}samples_nosplit.cfg
101	peller	1.9	fi
102			if [ $task = "sys" ]; then
103			./write_regression_systematics.py -P $pathAna/env/ -S $sample -C $configFile -C pathConfig$energy
104			fi
105			if [ $task = "eval" ]; then
106	peller	1.17	./evaluateMVA.py -D $MVAList -S $sample -U 0 -C ${configFile} -C pathConfig$energy
107	peller	1.9	fi
108	nmohr	1.14	if [ $task = "syseval" ]; then
109			./write_regression_systematics.py -P $pathAna/env/ -S $sample -C $configFile -C pathConfig$energy
110			./evaluateMVA.py -P $pathAna/env/sys/ -D $MVAList -S $sample -U 0 -C ${configFile} -C pathConfig$energy
111			fi
112	peller	1.9	if [ $task = "plot" ]; then
113	nmohr	1.14	./tree_stack.py -P $pathAna/env/sys/MVAout/ -C ${configFile} -C pathConfig$energy -R $sample
114	peller	1.9	fi
115			if [ $task = "dc" ]; then
116			./workspace_datacard.py -P $pathAna/env/sys/MVAout/ -C ${configFile} -C pathConfig$energy -V $sample
117			fi
118	peller	1.15
119			rm -rf $TMPDIR