VHbb/python/runAll.sh

#!/bin/bash

#Input argument:
#sample you want to run on. It has to match the naming in sample.info.
sample=$1
#sqrt(s) you want to run
energy=$2

task=$3

if [ $# -lt 3 ]
    then
    echo "ERROR: You passed " $# "arguments while the script needs at least 3 arguments."
    echo "Exiting..."
    echo " ---------------------------------- "
    echo " Usage : ./runAll.sh sample energy task"
    echo " ---------------------------------- "
    exit
fi

#Set the environment for the batch job execution

#cd /shome/peller/CMSSW_5_2_4_patch4/src/
# this doesnt work for me..?

cd $CMSSW_BASE/src/
source /swshare/psit3/etc/profile.d/cms_ui_env.sh
export SCRAM_ARCH="slc5_amd64_gcc462"
source $VO_CMS_SW_DIR/cmsset_default.sh
eval `scramv1 runtime -sh`
export LD_PRELOAD="libglobus_gssapi_gsi_gcc64pthr.so.0":${LD_PRELOAD}

mkdir $TMPDIR

printenv

#Path where the script write_regression_systematic.py and evaluateMVA.py are stored
#execute=$PWD/UserCode/VHbb/python/
#execute=/shome/peller/UserCode/VHbb/python/
#cd $execute

#back to the working dir
cd -

#Parsing the path form the config
pathAna=`python << EOF 
import os
from BetterConfigParser import BetterConfigParser
config = BetterConfigParser()
config.read('./pathConfig$energy')
print config.get('Directories','samplepath')
EOF`
echo $pathAna
configFile=config$energy

storagesamples=`python << EOF 
import os
from BetterConfigParser import BetterConfigParser
config = BetterConfigParser()
config.read('./pathConfig$energy')
print config.get('Directories','samplepath')
EOF`


MVAList=`python << EOF 
import os
from BetterConfigParser import BetterConfigParser
config = BetterConfigParser()
config.read('./config$energy')
print config.get('MVALists','List_for_submitscript')
EOF`
configFile=config$energy


#Create subdirs where processed samples will be stored
if [ ! -d $pathAna/env ]
    then
    mkdir $pathAna/env
fi
if [ ! -d $pathAna/env/sys ]
    then
    mkdir $pathAna/env/sys
fi
if [ ! -d $pathAna/env/sys/MVAout ]
    then
    mkdir $pathAna/env/sys/MVAout
fi

#Run the scripts

if [ $task = "prep" ]; then
    ./prepare_environment_with_config.py -I $storagesamples -O $pathAna/env/ -C ${energy}samples_nosplit.cfg
fi
if [ $task = "sys" ]; then
    ./write_regression_systematics.py -P $pathAna/env/ -S $sample -C $configFile -C pathConfig$energy
fi
if [ $task = "eval" ]; then
    ./evaluateMVA.py -D $MVAList -S $sample -U 0 -C ${configFile} -C pathConfig$energy
fi
if [ $task = "syseval" ]; then
    ./write_regression_systematics.py -P $pathAna/env/ -S $sample -C $configFile -C pathConfig$energy
    ./evaluateMVA.py -P $pathAna/env/sys/ -D $MVAList -S $sample -U 0 -C ${configFile} -C pathConfig$energy
fi
if [ $task = "plot" ]; then
    ./tree_stack.py -P $pathAna/env/sys/MVAout/ -C ${configFile} -C pathConfig$energy -R $sample
fi
if [ $task = "dc" ]; then
    ./workspace_datacard.py -P $pathAna/env/sys/MVAout/ -C ${configFile} -C pathConfig$energy -V $sample 
fi

rm -rf $TMPDIR
Revision:	1.18
Committed:	Mon Dec 3 13:28:40 2012 UTC (12 years, 5 months ago) by nmohr
Content type:	application/x-sh
Branch:	MAIN
Changes since 1.17:	+7 -15 lines
Log Message:	Env. for storage
#	User	Rev	Content
1	bortigno	1.5	#!/bin/bash
2
3			#Input argument:
4			#sample you want to run on. It has to match the naming in sample.info.
5	nmohr	1.1	sample=$1
6	bortigno	1.5	#sqrt(s) you want to run
7	nmohr	1.4	energy=$2
8	bortigno	1.5
9	peller	1.9	task=$3
10
11			if [ $# -lt 3 ]
12	bortigno	1.7	then
13	peller	1.9	echo "ERROR: You passed " $# "arguments while the script needs at least 3 arguments."
14	bortigno	1.7	echo "Exiting..."
15			echo " ---------------------------------- "
16	peller	1.9	echo " Usage : ./runAll.sh sample energy task"
17	bortigno	1.7	echo " ---------------------------------- "
18			exit
19			fi
20
21	bortigno	1.5	#Set the environment for the batch job execution
22	peller	1.8
23			#cd /shome/peller/CMSSW_5_2_4_patch4/src/
24			# this doesnt work for me..?
25	peller	1.17
26	nmohr	1.18	cd $CMSSW_BASE/src/
27			source /swshare/psit3/etc/profile.d/cms_ui_env.sh
28			export SCRAM_ARCH="slc5_amd64_gcc462"
29			source $VO_CMS_SW_DIR/cmsset_default.sh
30			eval `scramv1 runtime -sh`
31			export LD_PRELOAD="libglobus_gssapi_gsi_gcc64pthr.so.0":${LD_PRELOAD}
32	peller	1.15
33			mkdir $TMPDIR
34	bortigno	1.5
35	peller	1.17	printenv
36
37	bortigno	1.5	#Path where the script write_regression_systematic.py and evaluateMVA.py are stored
38			#execute=$PWD/UserCode/VHbb/python/
39	peller	1.8	#execute=/shome/peller/UserCode/VHbb/python/
40	bortigno	1.7	#cd $execute
41	bortigno	1.5
42			#back to the working dir
43	bortigno	1.7	cd -
44	bortigno	1.5
45			#Parsing the path form the config
46	nmohr	1.4	pathAna=`python << EOF
47			import os
48			from BetterConfigParser import BetterConfigParser
49			config = BetterConfigParser()
50			config.read('./pathConfig$energy')
51			print config.get('Directories','samplepath')
52			EOF`
53			echo $pathAna
54			configFile=config$energy
55	bortigno	1.5
56	peller	1.17	storagesamples=`python << EOF
57			import os
58			from BetterConfigParser import BetterConfigParser
59			config = BetterConfigParser()
60			config.read('./pathConfig$energy')
61	nmohr	1.18	print config.get('Directories','samplepath')
62	peller	1.17	EOF`
63
64
65	peller	1.9	MVAList=`python << EOF
66			import os
67			from BetterConfigParser import BetterConfigParser
68			config = BetterConfigParser()
69			config.read('./config$energy')
70			print config.get('MVALists','List_for_submitscript')
71			EOF`
72			configFile=config$energy
73
74
75	bortigno	1.5	#Create subdirs where processed samples will be stored
76	bortigno	1.10	if [ ! -d $pathAna/env ]
77			then
78			mkdir $pathAna/env
79			fi
80	bortigno	1.5	if [ ! -d $pathAna/env/sys ]
81			then
82			mkdir $pathAna/env/sys
83			fi
84	bortigno	1.7	if [ ! -d $pathAna/env/sys/MVAout ]
85	bortigno	1.5	then
86			mkdir $pathAna/env/sys/MVAout
87			fi
88
89			#Run the scripts
90	peller	1.9
91			if [ $task = "prep" ]; then
92	peller	1.17	./prepare_environment_with_config.py -I $storagesamples -O $pathAna/env/ -C ${energy}samples_nosplit.cfg
93	peller	1.9	fi
94			if [ $task = "sys" ]; then
95			./write_regression_systematics.py -P $pathAna/env/ -S $sample -C $configFile -C pathConfig$energy
96			fi
97			if [ $task = "eval" ]; then
98	peller	1.17	./evaluateMVA.py -D $MVAList -S $sample -U 0 -C ${configFile} -C pathConfig$energy
99	peller	1.9	fi
100	nmohr	1.14	if [ $task = "syseval" ]; then
101			./write_regression_systematics.py -P $pathAna/env/ -S $sample -C $configFile -C pathConfig$energy
102			./evaluateMVA.py -P $pathAna/env/sys/ -D $MVAList -S $sample -U 0 -C ${configFile} -C pathConfig$energy
103			fi
104	peller	1.9	if [ $task = "plot" ]; then
105	nmohr	1.14	./tree_stack.py -P $pathAna/env/sys/MVAout/ -C ${configFile} -C pathConfig$energy -R $sample
106	peller	1.9	fi
107			if [ $task = "dc" ]; then
108			./workspace_datacard.py -P $pathAna/env/sys/MVAout/ -C ${configFile} -C pathConfig$energy -V $sample
109			fi
110	peller	1.15
111			rm -rf $TMPDIR