VHbb/python/runAll.sh

#!/bin/bash

#Input argument:
#sample you want to run on. It has to match the naming in sample.info.
sample=$1
#sqrt(s) you want to run
energy=$2

task=$3

if [ $# -lt 3 ]
    then
    echo "ERROR: You passed " $# "arguments while the script needs at least 3 arguments."
    echo "Exiting..."
    echo " ---------------------------------- "
    echo " Usage : ./runAll.sh sample energy task"
    echo " ---------------------------------- "
    exit
fi

#Set the environment for the batch job execution

#cd /shome/peller/CMSSW_5_2_4_patch4/src/
# this doesnt work for me..?

cd $CMSSW_BASE/src/
source /swshare/psit3/etc/profile.d/cms_ui_env.sh
export SCRAM_ARCH="slc5_amd64_gcc462"
source $VO_CMS_SW_DIR/cmsset_default.sh
eval `scramv1 runtime -sh`
export LD_PRELOAD="libglobus_gssapi_gsi_gcc64pthr.so.0":${LD_PRELOAD}

mkdir $TMPDIR

printenv

#Path where the script write_regression_systematic.py and evaluateMVA.py are stored
#execute=$PWD/UserCode/VHbb/python/
#execute=/shome/peller/UserCode/VHbb/python/
#cd $execute

#back to the working dir
cd -

#Parsing the path form the config
pathAna=`python << EOF 
import os
from BetterConfigParser import BetterConfigParser
config = BetterConfigParser()
config.read('./pathConfig$energy')
print config.get('Directories','samplepath')
EOF`
echo $pathAna
configFile=config$energy

storagesamples=`python << EOF 
import os
from BetterConfigParser import BetterConfigParser
config = BetterConfigParser()
config.read('./pathConfig$energy')
print config.get('Directories','samplepath')
EOF`


MVAList=`python << EOF 
import os
from BetterConfigParser import BetterConfigParser
config = BetterConfigParser()
config.read('./config$energy')
print config.get('MVALists','List_for_submitscript')
EOF`
configFile=config$energy

pathAnaEnv=$pathAna/env
pathAnaSys=$pathAnaEnv/sys
pathAnaMVAout=$pathAnaSys/MVAout

#Create subdirs where processed samples will be stored
if [ ! -d $pathAnaEnv ]
    then
    mkdir $pathAnaEnv
fi
if [ ! -d $pathAnaSys ]
    then
    mkdir $pathAnaSys
fi
if [ ! -d $pathAnaMVAout ]
    then
    mkdir $pathAnaMVAout
fi

#Run the scripts

if [ $task = "prep" ]; then
    ./prepare_environment_with_config.py -I $storagesamples -O $pathAnaEnv/ -C ${energy}samples_nosplit.cfg
fi
if [ $task = "sys" ]; then
    ./write_regression_systematics.py -P $pathAnaEnv/ -S $sample -C $configFile -C pathConfig$energy
fi
if [ $task = "eval" ]; then
    ./evaluateMVA.py -D $MVAList -S $sample -U 0 -C ${configFile} -C pathConfig$energy
fi
if [ $task = "syseval" ]; then
    ./write_regression_systematics.py -P $pathAnaEnv/ -S $sample -C $configFile -C pathConfig$energy
    ./evaluateMVA.py -D $MVAList -S $sample -U 0 -C ${configFile} -C pathConfig$energy
fi
if [ $task = "plot" ]; then
    ./tree_stack.py -P $pathAnaMVAout/ -C ${configFile} -C pathConfig$energy -R $sample
fi
if [ $task = "dc" ]; then
    ./workspace_datacard.py -P $pathAnaMVAout/ -C ${configFile} -C pathConfig$energy -V $sample 
fi

rm -rf $TMPDIR
Revision:	1.20
Committed:	Wed Jan 16 10:50:30 2013 UTC (12 years, 3 months ago) by bortigno
Content type:	application/x-sh
Branch:	MAIN
Changes since 1.19:	+14 -11 lines
Log Message:	env sys and MVAout path grouped in variables, to make it easier to change the env/sys/MVAout path if needed. Still hardcoded though.
#	User	Rev	Content
1	bortigno	1.5	#!/bin/bash
2
3			#Input argument:
4			#sample you want to run on. It has to match the naming in sample.info.
5	nmohr	1.1	sample=$1
6	bortigno	1.5	#sqrt(s) you want to run
7	nmohr	1.4	energy=$2
8	bortigno	1.5
9	peller	1.9	task=$3
10
11			if [ $# -lt 3 ]
12	bortigno	1.7	then
13	peller	1.9	echo "ERROR: You passed " $# "arguments while the script needs at least 3 arguments."
14	bortigno	1.7	echo "Exiting..."
15			echo " ---------------------------------- "
16	peller	1.9	echo " Usage : ./runAll.sh sample energy task"
17	bortigno	1.7	echo " ---------------------------------- "
18			exit
19			fi
20
21	bortigno	1.5	#Set the environment for the batch job execution
22	peller	1.8
23			#cd /shome/peller/CMSSW_5_2_4_patch4/src/
24			# this doesnt work for me..?
25	peller	1.17
26	nmohr	1.18	cd $CMSSW_BASE/src/
27			source /swshare/psit3/etc/profile.d/cms_ui_env.sh
28			export SCRAM_ARCH="slc5_amd64_gcc462"
29			source $VO_CMS_SW_DIR/cmsset_default.sh
30			eval `scramv1 runtime -sh`
31			export LD_PRELOAD="libglobus_gssapi_gsi_gcc64pthr.so.0":${LD_PRELOAD}
32	peller	1.15
33			mkdir $TMPDIR
34	bortigno	1.5
35	peller	1.17	printenv
36
37	bortigno	1.5	#Path where the script write_regression_systematic.py and evaluateMVA.py are stored
38			#execute=$PWD/UserCode/VHbb/python/
39	peller	1.8	#execute=/shome/peller/UserCode/VHbb/python/
40	bortigno	1.7	#cd $execute
41	bortigno	1.5
42			#back to the working dir
43	bortigno	1.7	cd -
44	bortigno	1.5
45			#Parsing the path form the config
46	nmohr	1.4	pathAna=`python << EOF
47			import os
48			from BetterConfigParser import BetterConfigParser
49			config = BetterConfigParser()
50			config.read('./pathConfig$energy')
51			print config.get('Directories','samplepath')
52			EOF`
53			echo $pathAna
54			configFile=config$energy
55	bortigno	1.5
56	peller	1.17	storagesamples=`python << EOF
57			import os
58			from BetterConfigParser import BetterConfigParser
59			config = BetterConfigParser()
60			config.read('./pathConfig$energy')
61	nmohr	1.18	print config.get('Directories','samplepath')
62	peller	1.17	EOF`
63
64
65	peller	1.9	MVAList=`python << EOF
66			import os
67			from BetterConfigParser import BetterConfigParser
68			config = BetterConfigParser()
69			config.read('./config$energy')
70			print config.get('MVALists','List_for_submitscript')
71			EOF`
72			configFile=config$energy
73
74	bortigno	1.20	pathAnaEnv=$pathAna/env
75			pathAnaSys=$pathAnaEnv/sys
76			pathAnaMVAout=$pathAnaSys/MVAout
77	peller	1.9
78	bortigno	1.5	#Create subdirs where processed samples will be stored
79	bortigno	1.20	if [ ! -d $pathAnaEnv ]
80	bortigno	1.10	then
81	bortigno	1.20	mkdir $pathAnaEnv
82	bortigno	1.10	fi
83	bortigno	1.20	if [ ! -d $pathAnaSys ]
84	bortigno	1.5	then
85	bortigno	1.20	mkdir $pathAnaSys
86	bortigno	1.5	fi
87	bortigno	1.20	if [ ! -d $pathAnaMVAout ]
88	bortigno	1.5	then
89	bortigno	1.20	mkdir $pathAnaMVAout
90	bortigno	1.5	fi
91
92			#Run the scripts
93	peller	1.9
94			if [ $task = "prep" ]; then
95	bortigno	1.20	./prepare_environment_with_config.py -I $storagesamples -O $pathAnaEnv/ -C ${energy}samples_nosplit.cfg
96	peller	1.9	fi
97			if [ $task = "sys" ]; then
98	bortigno	1.20	./write_regression_systematics.py -P $pathAnaEnv/ -S $sample -C $configFile -C pathConfig$energy
99	peller	1.9	fi
100			if [ $task = "eval" ]; then
101	peller	1.17	./evaluateMVA.py -D $MVAList -S $sample -U 0 -C ${configFile} -C pathConfig$energy
102	peller	1.9	fi
103	nmohr	1.14	if [ $task = "syseval" ]; then
104	bortigno	1.20	./write_regression_systematics.py -P $pathAnaEnv/ -S $sample -C $configFile -C pathConfig$energy
105	bortigno	1.19	./evaluateMVA.py -D $MVAList -S $sample -U 0 -C ${configFile} -C pathConfig$energy
106	nmohr	1.14	fi
107	peller	1.9	if [ $task = "plot" ]; then
108	bortigno	1.20	./tree_stack.py -P $pathAnaMVAout/ -C ${configFile} -C pathConfig$energy -R $sample
109	peller	1.9	fi
110			if [ $task = "dc" ]; then
111	bortigno	1.20	./workspace_datacard.py -P $pathAnaMVAout/ -C ${configFile} -C pathConfig$energy -V $sample
112	peller	1.9	fi
113	peller	1.15
114			rm -rf $TMPDIR