VHbb/python/runAll.sh

#!/bin/bash

#Input argument:
#sample you want to run on. It has to match the naming in sample.info.
sample=$1
#sqrt(s) you want to run
energy=$2

task=$3

if [ $# -lt 3 ]
    then
    echo "ERROR: You passed " $# "arguments while the script needs at least 3 arguments."
    echo "Exiting..."
    echo " ---------------------------------- "
    echo " Usage : ./runAll.sh sample energy task"
    echo " ---------------------------------- "
    exit
fi

#Set the environment for the batch job execution

#cd /shome/peller/CMSSW_5_2_4_patch4/src/
# this doesnt work for me..?

cd $CMSSW_BASE/src/
source /swshare/psit3/etc/profile.d/cms_ui_env.sh
export SCRAM_ARCH="slc5_amd64_gcc462"
source $VO_CMS_SW_DIR/cmsset_default.sh
eval `scramv1 runtime -sh`
export LD_PRELOAD="libglobus_gssapi_gsi_gcc64pthr.so.0":${LD_PRELOAD}

mkdir $TMPDIR

printenv

#Path where the script write_regression_systematic.py and evaluateMVA.py are stored
#execute=$PWD/UserCode/VHbb/python/
#execute=/shome/peller/UserCode/VHbb/python/
#cd $execute

#back to the working dir
cd -

#Parsing the path form the config
#pathAna=`python << EOF 
#import os
#from BetterConfigParser import BetterConfigParser
#config = BetterConfigParser()
#config.read('./pathConfig$energy')
#print config.get('Directories','samplepath')
#EOF`
#echo $pathAna

#configFile=config$energy

#storagesamples=`python << EOF 
#import os
#from BetterConfigParser import BetterConfigParser
#config = BetterConfigParser()
#config.read('./pathConfig$energy')
#print config.get('Directories','samplepath')
#EOF`

MVAList=`python << EOF 
import os
from BetterConfigParser import BetterConfigParser
config = BetterConfigParser()
config.read('./${energy}config/training')
print config.get('MVALists','List_for_submitscript')
EOF`

pathAnaEnv=$pathAna/env
pathAnaSys=$pathAnaEnv/sys
pathAnaMVAout=$pathAnaSys/MVAout

#Create subdirs where processed samples will be stored
#if [ ! -d $pathAna/env ]
#    then
#    mkdir $pathAna/env
#fi
#if [ ! -d $pathAna/env/sys ]
#    then
#    mkdir $pathAna/env/sys
#fi
#if [ ! -d $pathAna/env/sys/MVAout ]
#    then
#    mkdir $pathAna/env/sys/MVAout
#fi

#Run the scripts

if [ $task = "prep" ]; then
    ./prepare_environment_with_config.py -C ${energy}config/samples_nosplit.cfg -C ${energy}config/paths
fi
if [ $task = "sys" ]; then
    ./write_regression_systematics.py -S $sample -C ${energy}config/general -C ${energy}config/paths
fi
if [ $task = "eval" ]; then
    ./evaluateMVA.py -D $MVAList -S $sample -C ${energy}config/general -C ${energy}config/paths -C ${energy}config/cuts -C ${energy}config/training
fi
if [ $task = "syseval" ]; then
    ./write_regression_systematics.py -S $sample -C ${energy}config/general -C ${energy}config/paths
    ./evaluateMVA.py -D $MVAList -S $sample -C ${energy}config/general -C ${energy}config/paths -C ${energy}config/cuts -C ${energy}config/training
fi
if [ $task = "plot" ]; then
    ./tree_stack.py -R $sample -C ${energy}config/general -C ${energy}config/paths -C ${energy}config/cuts -C ${energy}config/plots
fi
if [ $task = "dc" ]; then
    ./workspace_datacard.py -V $sample -C ${energy}config/general -C ${energy}config/paths -C ${energy}config/cuts -C ${energy}config/datacards
fi

rm -rf $TMPDIR
Revision:	1.21
Committed:	Wed Jan 16 16:22:47 2013 UTC (12 years, 3 months ago) by peller
Content type:	application/x-sh
Branch:	MAIN
Changes since 1.20:	+38 -39 lines
Log Message:	reorganized the whole repository. Macros im myutils, config files in subdirectories. Config file split in parts. Path config file restructured. Moved all path options to the path config. Changed the code accordingly.
#	User	Rev	Content
1	bortigno	1.5	#!/bin/bash
2
3			#Input argument:
4			#sample you want to run on. It has to match the naming in sample.info.
5	nmohr	1.1	sample=$1
6	bortigno	1.5	#sqrt(s) you want to run
7	nmohr	1.4	energy=$2
8	bortigno	1.5
9	peller	1.9	task=$3
10
11			if [ $# -lt 3 ]
12	bortigno	1.7	then
13	peller	1.9	echo "ERROR: You passed " $# "arguments while the script needs at least 3 arguments."
14	bortigno	1.7	echo "Exiting..."
15			echo " ---------------------------------- "
16	peller	1.9	echo " Usage : ./runAll.sh sample energy task"
17	bortigno	1.7	echo " ---------------------------------- "
18			exit
19			fi
20
21	bortigno	1.5	#Set the environment for the batch job execution
22	peller	1.8
23			#cd /shome/peller/CMSSW_5_2_4_patch4/src/
24			# this doesnt work for me..?
25	peller	1.17
26	nmohr	1.18	cd $CMSSW_BASE/src/
27			source /swshare/psit3/etc/profile.d/cms_ui_env.sh
28			export SCRAM_ARCH="slc5_amd64_gcc462"
29			source $VO_CMS_SW_DIR/cmsset_default.sh
30			eval `scramv1 runtime -sh`
31			export LD_PRELOAD="libglobus_gssapi_gsi_gcc64pthr.so.0":${LD_PRELOAD}
32	peller	1.15
33			mkdir $TMPDIR
34	bortigno	1.5
35	peller	1.17	printenv
36
37	bortigno	1.5	#Path where the script write_regression_systematic.py and evaluateMVA.py are stored
38			#execute=$PWD/UserCode/VHbb/python/
39	peller	1.8	#execute=/shome/peller/UserCode/VHbb/python/
40	bortigno	1.7	#cd $execute
41	bortigno	1.5
42			#back to the working dir
43	bortigno	1.7	cd -
44	bortigno	1.5
45			#Parsing the path form the config
46	peller	1.21	#pathAna=`python << EOF
47			#import os
48			#from BetterConfigParser import BetterConfigParser
49			#config = BetterConfigParser()
50			#config.read('./pathConfig$energy')
51			#print config.get('Directories','samplepath')
52			#EOF`
53			#echo $pathAna
54
55			#configFile=config$energy
56
57			#storagesamples=`python << EOF
58			#import os
59			#from BetterConfigParser import BetterConfigParser
60			#config = BetterConfigParser()
61			#config.read('./pathConfig$energy')
62			#print config.get('Directories','samplepath')
63			#EOF`
64	peller	1.17
65	peller	1.9	MVAList=`python << EOF
66			import os
67			from BetterConfigParser import BetterConfigParser
68			config = BetterConfigParser()
69	peller	1.21	config.read('./${energy}config/training')
70	peller	1.9	print config.get('MVALists','List_for_submitscript')
71			EOF`
72
73	bortigno	1.20	pathAnaEnv=$pathAna/env
74			pathAnaSys=$pathAnaEnv/sys
75			pathAnaMVAout=$pathAnaSys/MVAout
76	peller	1.9
77	bortigno	1.5	#Create subdirs where processed samples will be stored
78	peller	1.21	#if [ ! -d $pathAna/env ]
79			# then
80			# mkdir $pathAna/env
81			#fi
82			#if [ ! -d $pathAna/env/sys ]
83			# then
84			# mkdir $pathAna/env/sys
85			#fi
86			#if [ ! -d $pathAna/env/sys/MVAout ]
87			# then
88			# mkdir $pathAna/env/sys/MVAout
89			#fi
90	bortigno	1.5
91			#Run the scripts
92	peller	1.9
93			if [ $task = "prep" ]; then
94	peller	1.21	./prepare_environment_with_config.py -C ${energy}config/samples_nosplit.cfg -C ${energy}config/paths
95	peller	1.9	fi
96			if [ $task = "sys" ]; then
97	peller	1.21	./write_regression_systematics.py -S $sample -C ${energy}config/general -C ${energy}config/paths
98	peller	1.9	fi
99			if [ $task = "eval" ]; then
100	peller	1.21	./evaluateMVA.py -D $MVAList -S $sample -C ${energy}config/general -C ${energy}config/paths -C ${energy}config/cuts -C ${energy}config/training
101	peller	1.9	fi
102	nmohr	1.14	if [ $task = "syseval" ]; then
103	peller	1.21	./write_regression_systematics.py -S $sample -C ${energy}config/general -C ${energy}config/paths
104			./evaluateMVA.py -D $MVAList -S $sample -C ${energy}config/general -C ${energy}config/paths -C ${energy}config/cuts -C ${energy}config/training
105	nmohr	1.14	fi
106	peller	1.9	if [ $task = "plot" ]; then
107	peller	1.21	./tree_stack.py -R $sample -C ${energy}config/general -C ${energy}config/paths -C ${energy}config/cuts -C ${energy}config/plots
108	peller	1.9	fi
109			if [ $task = "dc" ]; then
110	peller	1.21	./workspace_datacard.py -V $sample -C ${energy}config/general -C ${energy}config/paths -C ${energy}config/cuts -C ${energy}config/datacards
111	peller	1.9	fi
112	peller	1.15
113			rm -rf $TMPDIR