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Comparing UserCode/VHbb/python/runAll.sh (file contents):
Revision 1.13 by peller, Fri Oct 5 11:58:18 2012 UTC vs.
Revision 1.21 by peller, Wed Jan 16 16:22:47 2013 UTC

# Line 22 | Line 22 | fi
22  
23   #cd /shome/peller/CMSSW_5_2_4_patch4/src/
24   # this doesnt work for me..?
25 +
26   cd $CMSSW_BASE/src/
27   source /swshare/psit3/etc/profile.d/cms_ui_env.sh
28   export SCRAM_ARCH="slc5_amd64_gcc462"
29   source $VO_CMS_SW_DIR/cmsset_default.sh
30   eval `scramv1 runtime -sh`
31 < unset TMP
32 < unset TMPDIR
31 > export LD_PRELOAD="libglobus_gssapi_gsi_gcc64pthr.so.0":${LD_PRELOAD}
32 >
33 > mkdir $TMPDIR
34 >
35 > printenv
36  
37   #Path where the script write_regression_systematic.py and evaluateMVA.py are stored
38   #execute=$PWD/UserCode/VHbb/python/
# Line 39 | Line 43 | unset TMPDIR
43   cd -
44  
45   #Parsing the path form the config
46 < pathAna=`python << EOF
47 < import os
48 < from BetterConfigParser import BetterConfigParser
49 < config = BetterConfigParser()
50 < config.read('./pathConfig$energy')
51 < print config.get('Directories','samplepath')
52 < EOF`
53 < echo $pathAna
54 < configFile=config$energy
46 > #pathAna=`python << EOF
47 > #import os
48 > #from BetterConfigParser import BetterConfigParser
49 > #config = BetterConfigParser()
50 > #config.read('./pathConfig$energy')
51 > #print config.get('Directories','samplepath')
52 > #EOF`
53 > #echo $pathAna
54 >
55 > #configFile=config$energy
56 >
57 > #storagesamples=`python << EOF
58 > #import os
59 > #from BetterConfigParser import BetterConfigParser
60 > #config = BetterConfigParser()
61 > #config.read('./pathConfig$energy')
62 > #print config.get('Directories','samplepath')
63 > #EOF`
64  
65   MVAList=`python << EOF
66   import os
67   from BetterConfigParser import BetterConfigParser
68   config = BetterConfigParser()
69 < config.read('./config$energy')
69 > config.read('./${energy}config/training')
70   print config.get('MVALists','List_for_submitscript')
71   EOF`
59 configFile=config$energy
72  
73 + pathAnaEnv=$pathAna/env
74 + pathAnaSys=$pathAnaEnv/sys
75 + pathAnaMVAout=$pathAnaSys/MVAout
76  
77   #Create subdirs where processed samples will be stored
78 < if [ ! -d $pathAna/env ]
79 <    then
80 <    mkdir $pathAna/env
81 < fi
82 < if [ ! -d $pathAna/env/sys ]
83 <    then
84 <    mkdir $pathAna/env/sys
85 < fi
86 < if [ ! -d $pathAna/env/sys/MVAout ]
87 <    then
88 <    mkdir $pathAna/env/sys/MVAout
89 < fi
75 <
76 < #Create the link to th sample information in the new sudfolders.
77 < #It always update the link.
78 < ln -s -f $pathAna/env/samples.info  $pathAna/env/sys/samples.info
79 < ln -s -f $pathAna/env/samples.info $pathAna/env/sys/MVAout/samples.info
78 > #if [ ! -d $pathAna/env ]
79 > #    then
80 > #    mkdir $pathAna/env
81 > #fi
82 > #if [ ! -d $pathAna/env/sys ]
83 > #    then
84 > #    mkdir $pathAna/env/sys
85 > #fi
86 > #if [ ! -d $pathAna/env/sys/MVAout ]
87 > #    then
88 > #    mkdir $pathAna/env/sys/MVAout
89 > #fi
90  
91   #Run the scripts
92  
93   if [ $task = "prep" ]; then
94 <    ./prepare_environment_with_config.py -I $pathAna -O $pathAna/env/ -C ${energy}samples_nosplit.cfg
94 >    ./prepare_environment_with_config.py -C ${energy}config/samples_nosplit.cfg -C ${energy}config/paths
95   fi
96   if [ $task = "sys" ]; then
97 <    ./write_regression_systematics.py -P $pathAna/env/ -S $sample -C $configFile -C pathConfig$energy
97 >    ./write_regression_systematics.py -S $sample -C ${energy}config/general -C ${energy}config/paths
98   fi
99   if [ $task = "eval" ]; then
100 <    ./evaluateMVA.py -P $pathAna/env/sys/ -D $MVAList -S $sample -U 0 -C ${configFile} -C pathConfig$energy
100 >    ./evaluateMVA.py -D $MVAList -S $sample -C ${energy}config/general -C ${energy}config/paths -C ${energy}config/cuts -C ${energy}config/training
101 > fi
102 > if [ $task = "syseval" ]; then
103 >    ./write_regression_systematics.py -S $sample -C ${energy}config/general -C ${energy}config/paths
104 >    ./evaluateMVA.py -D $MVAList -S $sample -C ${energy}config/general -C ${energy}config/paths -C ${energy}config/cuts -C ${energy}config/training
105   fi
106   if [ $task = "plot" ]; then
107 <    ./tree_stack.py -P $pathAna/env/sys/ -C ${configFile} -C pathConfig$energy -R $sample
107 >    ./tree_stack.py -R $sample -C ${energy}config/general -C ${energy}config/paths -C ${energy}config/cuts -C ${energy}config/plots
108   fi
109   if [ $task = "dc" ]; then
110 <    ./workspace_datacard.py -P $pathAna/env/sys/MVAout/ -C ${configFile} -C pathConfig$energy -V $sample
110 >    ./workspace_datacard.py -V $sample -C ${energy}config/general -C ${energy}config/paths -C ${energy}config/cuts -C ${energy}config/datacards
111   fi
112 +
113 + rm -rf $TMPDIR

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