VHbb/python/runAll.sh

#!/bin/bash

#Input argument:
#sample you want to run on. It has to match the naming in sample.info.
sample=$1
#sqrt(s) you want to run
energy=$2

task=$3

if [ $# -lt 3 ]
    then
    echo "ERROR: You passed " $# "arguments while the script needs at least 3 arguments."
    echo "Exiting..."
    echo " ---------------------------------- "
    echo " Usage : ./runAll.sh sample energy task"
    echo " ---------------------------------- "
    exit
fi

#Set the environment for the batch job execution

#cd /shome/peller/CMSSW_5_2_4_patch4/src/
# this doesnt work for me..?
cd $CMSSW_BASE/src/
source /swshare/psit3/etc/profile.d/cms_ui_env.sh
export SCRAM_ARCH="slc5_amd64_gcc462"
source $VO_CMS_SW_DIR/cmsset_default.sh
eval `scramv1 runtime -sh`
export LD_LIBRARY_PATH=/swshare/glite/d-cache/dcap/lib/:$LD_LIBRARY_PATH
#unset TMP
#unset TMPDIR

mkdir $TMPDIR

#Path where the script write_regression_systematic.py and evaluateMVA.py are stored
#execute=$PWD/UserCode/VHbb/python/
#execute=/shome/peller/UserCode/VHbb/python/
#cd $execute

#back to the working dir
cd -

#Parsing the path form the config
pathAna=`python << EOF 
import os
from BetterConfigParser import BetterConfigParser
config = BetterConfigParser()
config.read('./pathConfig$energy')
print config.get('Directories','samplepath')
EOF`
echo $pathAna
configFile=config$energy

MVAList=`python << EOF 
import os
from BetterConfigParser import BetterConfigParser
config = BetterConfigParser()
config.read('./config$energy')
print config.get('MVALists','List_for_submitscript')
EOF`
configFile=config$energy


#Create subdirs where processed samples will be stored
if [ ! -d $pathAna/env ]
    then
    mkdir $pathAna/env
fi
if [ ! -d $pathAna/env/sys ]
    then
    mkdir $pathAna/env/sys
fi
if [ ! -d $pathAna/env/sys/MVAout ]
    then
    mkdir $pathAna/env/sys/MVAout
fi

#Run the scripts

if [ $task = "prep" ]; then
    ./prepare_environment_with_config.py -I $pathAna -O $pathAna/env/ -C ${energy}samples_nosplit.cfg
fi
if [ $task = "sys" ]; then
    ./write_regression_systematics.py -P $pathAna/env/ -S $sample -C $configFile -C pathConfig$energy
fi
if [ $task = "eval" ]; then
    ./evaluateMVA.py -P $pathAna/env/sys/ -D $MVAList -S $sample -U 0 -C ${configFile} -C pathConfig$energy
fi
if [ $task = "syseval" ]; then
    ./write_regression_systematics.py -P $pathAna/env/ -S $sample -C $configFile -C pathConfig$energy
    ./evaluateMVA.py -P $pathAna/env/sys/ -D $MVAList -S $sample -U 0 -C ${configFile} -C pathConfig$energy
fi
if [ $task = "plot" ]; then
    ./tree_stack.py -P $pathAna/env/sys/MVAout/ -C ${configFile} -C pathConfig$energy -R $sample
fi
if [ $task = "dc" ]; then
    ./workspace_datacard.py -P $pathAna/env/sys/MVAout/ -C ${configFile} -C pathConfig$energy -V $sample 
fi

rm -rf $TMPDIR
Revision:	1.16
Committed:	Thu Oct 11 16:53:25 2012 UTC (12 years, 7 months ago) by nmohr
Content type:	application/x-sh
Branch:	MAIN
CVS Tags:	hcpApproval, HCP_unblinding, hcpPreApp
Changes since 1.15:	+1 -5 lines
Log Message:	Only one place for samples info
#	User	Rev	Content
1	bortigno	1.5	#!/bin/bash
2
3			#Input argument:
4			#sample you want to run on. It has to match the naming in sample.info.
5	nmohr	1.1	sample=$1
6	bortigno	1.5	#sqrt(s) you want to run
7	nmohr	1.4	energy=$2
8	bortigno	1.5
9	peller	1.9	task=$3
10
11			if [ $# -lt 3 ]
12	bortigno	1.7	then
13	peller	1.9	echo "ERROR: You passed " $# "arguments while the script needs at least 3 arguments."
14	bortigno	1.7	echo "Exiting..."
15			echo " ---------------------------------- "
16	peller	1.9	echo " Usage : ./runAll.sh sample energy task"
17	bortigno	1.7	echo " ---------------------------------- "
18			exit
19			fi
20
21	bortigno	1.5	#Set the environment for the batch job execution
22	peller	1.8
23			#cd /shome/peller/CMSSW_5_2_4_patch4/src/
24			# this doesnt work for me..?
25	nmohr	1.4	cd $CMSSW_BASE/src/
26	nmohr	1.1	source /swshare/psit3/etc/profile.d/cms_ui_env.sh
27			export SCRAM_ARCH="slc5_amd64_gcc462"
28			source $VO_CMS_SW_DIR/cmsset_default.sh
29			eval `scramv1 runtime -sh`
30	nmohr	1.16	export LD_LIBRARY_PATH=/swshare/glite/d-cache/dcap/lib/:$LD_LIBRARY_PATH
31	peller	1.15	#unset TMP
32			#unset TMPDIR
33
34			mkdir $TMPDIR
35	bortigno	1.5
36			#Path where the script write_regression_systematic.py and evaluateMVA.py are stored
37			#execute=$PWD/UserCode/VHbb/python/
38	peller	1.8	#execute=/shome/peller/UserCode/VHbb/python/
39	bortigno	1.7	#cd $execute
40	bortigno	1.5
41			#back to the working dir
42	bortigno	1.7	cd -
43	bortigno	1.5
44			#Parsing the path form the config
45	nmohr	1.4	pathAna=`python << EOF
46			import os
47			from BetterConfigParser import BetterConfigParser
48			config = BetterConfigParser()
49			config.read('./pathConfig$energy')
50			print config.get('Directories','samplepath')
51			EOF`
52			echo $pathAna
53			configFile=config$energy
54	bortigno	1.5
55	peller	1.9	MVAList=`python << EOF
56			import os
57			from BetterConfigParser import BetterConfigParser
58			config = BetterConfigParser()
59			config.read('./config$energy')
60			print config.get('MVALists','List_for_submitscript')
61			EOF`
62			configFile=config$energy
63
64
65	bortigno	1.5	#Create subdirs where processed samples will be stored
66	bortigno	1.10	if [ ! -d $pathAna/env ]
67			then
68			mkdir $pathAna/env
69			fi
70	bortigno	1.5	if [ ! -d $pathAna/env/sys ]
71			then
72			mkdir $pathAna/env/sys
73			fi
74	bortigno	1.7	if [ ! -d $pathAna/env/sys/MVAout ]
75	bortigno	1.5	then
76			mkdir $pathAna/env/sys/MVAout
77			fi
78
79			#Run the scripts
80	peller	1.9
81			if [ $task = "prep" ]; then
82	bortigno	1.10	./prepare_environment_with_config.py -I $pathAna -O $pathAna/env/ -C ${energy}samples_nosplit.cfg
83	peller	1.9	fi
84			if [ $task = "sys" ]; then
85			./write_regression_systematics.py -P $pathAna/env/ -S $sample -C $configFile -C pathConfig$energy
86			fi
87			if [ $task = "eval" ]; then
88			./evaluateMVA.py -P $pathAna/env/sys/ -D $MVAList -S $sample -U 0 -C ${configFile} -C pathConfig$energy
89			fi
90	nmohr	1.14	if [ $task = "syseval" ]; then
91			./write_regression_systematics.py -P $pathAna/env/ -S $sample -C $configFile -C pathConfig$energy
92			./evaluateMVA.py -P $pathAna/env/sys/ -D $MVAList -S $sample -U 0 -C ${configFile} -C pathConfig$energy
93			fi
94	peller	1.9	if [ $task = "plot" ]; then
95	nmohr	1.14	./tree_stack.py -P $pathAna/env/sys/MVAout/ -C ${configFile} -C pathConfig$energy -R $sample
96	peller	1.9	fi
97			if [ $task = "dc" ]; then
98			./workspace_datacard.py -P $pathAna/env/sys/MVAout/ -C ${configFile} -C pathConfig$energy -V $sample
99			fi
100	peller	1.15
101			rm -rf $TMPDIR