| 83 |
|
config = BetterConfigParser() |
| 84 |
|
config.read(configs) |
| 85 |
|
|
| 86 |
+ |
def dump_config(configs,output_file): |
| 87 |
+ |
""" |
| 88 |
+ |
Dump all the configs in a output file |
| 89 |
+ |
Args: |
| 90 |
+ |
output_file: the file where the log will be dumped |
| 91 |
+ |
configs: list of files (string) to be dumped |
| 92 |
+ |
Returns: |
| 93 |
+ |
nothing |
| 94 |
+ |
""" |
| 95 |
+ |
outf = open(output_file,'w') |
| 96 |
+ |
for i in configs: |
| 97 |
+ |
try: |
| 98 |
+ |
f=open(i,'r') |
| 99 |
+ |
outf.write(f.read()) |
| 100 |
+ |
except: print '@WARNING: Config' + i + ' not found. It will not be used.' |
| 101 |
|
|
| 102 |
|
def compile_macro(config,macro): |
| 103 |
|
""" |
| 150 |
|
repDict['name'] = '%(job)s_%(en)s%(task)s' %repDict |
| 151 |
|
command = 'qsub -V -cwd -q %(queue)s -l h_vmem=6G -N %(name)s -o %(logpath)s/%(timestamp)s_%(job)s_%(en)s_%(task)s.out -e %(logpath)s/%(timestamp)s_%(job)s_%(en)s_%(task)s.err runAll.sh %(job)s %(en)s ' %(repDict) + opts.task + ' ' + repDict['job_id'] + ' ' + repDict['additional'] |
| 152 |
|
print command |
| 153 |
+ |
dump_config(configs,"%(logpath)s/%(timestamp)s_%(job)s_%(en)s_%(task)s.config" %(repDict)) |
| 154 |
|
subprocess.call([command], shell=True) |
| 155 |
|
|
| 156 |
|
if opts.task == 'train': |
