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root/cvsroot/UserCode/VHbb/python/submitThem.py

Comparing UserCode/VHbb/python/submitThem.py (file contents):
Revision 1.6 by nmohr, Thu Sep 20 18:20:00 2012 UTC vs.
Revision 1.33 by nmohr, Thu Feb 28 16:38:49 2013 UTC

#	Line 1 | Line 1
1		#! /usr/bin/env python
2	–	import os,sys,pickle,subprocess
2		from optparse import OptionParser
3	<	from BetterConfigParser import BetterConfigParser
4	<	from samplesclass import sample
3	>	import sys
4	>	import time
5	>	import os
6	>	import shutil
7
8		parser = OptionParser()
9		parser.add_option("-T", "--tag", dest="tag", default="",
10		help="Tag to run the analysis with, example '8TeV' uses config8TeV and pathConfig8TeV to run the analysis")
11	+	parser.add_option("-J", "--task", dest="task", default="",
12	+	help="Task to be done, i.e. 'dc' for Datacards, 'prep' for preparation of Trees, 'plot' to produce plots or 'eval' to write the MVA output or 'sys' to write regression and systematics (or 'syseval' for both). ")
13	+	parser.add_option("-M", "--mass", dest="mass", default="125",
14	+	help="Mass for DC or Plots, 110...135")
15	+	parser.add_option("-S","--samples",dest="samples",default="",
16	+	help="samples you want to run on")
17	+	parser.add_option("-F", "--folderTag", dest="ftag", default="",
18	+	help="Creats a new folder structure for outputs or uses an existing one with the given name")
19	+	parser.add_option("-N", "--number-of-events", dest="nevents_split", default=100000,
20	+	help="Number of events per file when splitting.")
21	+	parser.add_option("-P", "--philipp-love-progress-bars", dest="philipp_love_progress_bars", default=False,
22	+	help="If you share the love of Philipp...")
23
24		(opts, args) = parser.parse_args(sys.argv)
25	+
26	+	import os,shutil,pickle,subprocess,ROOT,re
27	+	ROOT.gROOT.SetBatch(True)
28	+	from myutils import BetterConfigParser, Sample, ParseInfo, sample_parser
29	+	import getpass
30	+
31		if opts.tag == "":
32		print "Please provide tag to run the analysis with, example '-T 8TeV' uses config8TeV and pathConfig8TeV to run the analysis."
33		sys.exit(123)
34	+
35	+	if opts.task == "":
36	+	print "Please provide a task.\n-J prep:\tpreparation of Trees\n-J sys:\t\twrite regression and systematics\n-J eval:\tcreate MVA output\n-J plot:\tproduce Plots\n-J dc:\t\twrite workspaces and datacards"
37	+	sys.exit(123)
38	+
39	+
40		en = opts.tag
41	<	configs = ['config%s'%(en),'pathConfig%s'%(en)]
41	>
42	>	#create the list with the samples to run over
43	>	samplesList=opts.samples.split(",")
44	>
45	>	timestamp = time.asctime().replace(' ','_').replace(':','-')
46	>
47	>	configs = ['%sconfig/general'%(en),'%sconfig/paths'%(en),'%sconfig/plots'%(en),'%sconfig/training'%(en),'%sconfig/datacards'%(en),'%sconfig/cuts'%(en)]
48	>
49	>	pathconfig = BetterConfigParser()
50	>	pathconfig.read('%sconfig/paths'%(en))
51	>
52	>	if not opts.ftag == '':
53	>	tagDir = pathconfig.get('Directories','tagDir')
54	>	DirStruct={'tagDir':tagDir,'ftagdir':'%s/%s/'%(tagDir,opts.ftag),'logpath':'%s/%s/%s/'%(tagDir,opts.ftag,'Logs'),'plotpath':'%s/%s/%s/'%(tagDir,opts.ftag,'Plots'),'limitpath':'%s/%s/%s/'%(tagDir,opts.ftag,'Limits'),'confpath':'%s/%s/%s/'%(tagDir,opts.ftag,'config') }
55	>
56	>	for keys in ['tagDir','ftagdir','logpath','plotpath','limitpath','confpath']:
57	>	try:
58	>	os.stat(DirStruct[keys])
59	>	except:
60	>	os.mkdir(DirStruct[keys])
61	>
62	>	pathfile = open('%sconfig/paths'%(en))
63	>	buffer = pathfile.readlines()
64	>	pathfile.close()
65	>	os.rename('%sconfig/paths'%(en),'%sconfig/paths.bkp'%(en))
66	>	pathfile = open('%sconfig/paths'%(en),'w')
67	>	for line in buffer:
68	>	if line.startswith('plotpath'):
69	>	line = 'plotpath: %s\n'%DirStruct['plotpath']
70	>	elif line.startswith('logpath'):
71	>	line = 'logpath: %s\n'%DirStruct['logpath']
72	>	elif line.startswith('limits'):
73	>	line = 'limits: %s\n'%DirStruct['limitpath']
74	>	pathfile.write(line)
75	>	pathfile.close()
76	>
77	>	#copy config files
78	>	for item in configs:
79	>	shutil.copyfile(item,'%s/%s/%s'%(tagDir,opts.ftag,item.strip(en)))
80	>
81	>
82		print configs
83		config = BetterConfigParser()
84		config.read(configs)
85	+
86	+	btagLibrary = config.get('BTagReshaping','library')
87	+	submitDir = os.getcwd()
88	+	os.chdir(os.path.dirname(btagLibrary))
89	+	if not os.path.exists(btagLibrary):
90	+	ROOT.gROOT.LoadMacro('%s+'%btagLibrary.replace('_h.so','.h'))
91	+	shutil.copyfile(os.path.basename(btagLibrary),'/scratch/%s/%s'%(getpass.getuser(),os.path.basename(btagLibrary)))
92	+	shutil.copyfile('/scratch/%s/%s'%(getpass.getuser(),os.path.basename(btagLibrary)),btagLibrary)
93	+	os.chdir(submitDir)
94		logPath = config.get("Directories","logpath")
95	<	repDict = {'en':en,'logpath':logPath,'job':''}
95	>	#check if the logPath exist. If not exit
96	>	if( not os.path.isdir(logPath) ):
97	>	print 'ERROR: ' + logPath + ': dir not found.'
98	>	print 'ERROR: Create it before submitting '
99	>	print 'Exit'
100	>	sys.exit(-1)
101	>
102	>	repDict = {'en':en,'logpath':logPath,'job':'','task':opts.task,'queue': 'all.q','timestamp':timestamp,'additional':'','job_id':''}
103		def submit(job,repDict):
104		repDict['job'] = job
105	<	command = 'qsub -V -cwd -q all.q -N %(job)s_%(en)s -o %(logpath)s/%(job)s_%(en)s.out -e %(logpath)s/%(job)s_%(en)s.err runAll.sh %(job)s %(en)s' %repDict
105	>	command = 'qsub -V -cwd -q %(queue)s -l h_vmem=6G -N %(job)s_%(en)s%(task)s -o %(logpath)s/%(timestamp)s_%(job)s_%(en)s_%(task)s.out -e %(logpath)s/%(timestamp)s_%(job)s_%(en)s_%(task)s.err runAll.sh %(job)s %(en)s ' %(repDict) + opts.task + ' ' + repDict['job_id'] + ' ' + repDict['additional']
106		print command
107		subprocess.call([command], shell=True)
108
109	<	path = config.get("Directories","samplepath")
110	<	infofile = open(path+'/env/samples.info','r')
111	<	info = pickle.load(infofile)
112	<	infofile.close()
109	>	if opts.task == 'train':
110	>	train_list = (config.get('MVALists','List_for_submitscript')).split(',')
111	>	print train_list
112	>	for item in train_list:
113	>	submit(item,repDict)
114	>
115	>
116	>	if opts.task == 'dc':
117	>	#DC_vars = config.items('Limit')
118	>	DC_vars= (config.get('LimitGeneral','List')).split(',')
119	>	print DC_vars
120	>
121	>	if opts.task == 'plot':
122	>	Plot_vars= (config.get('Plot_general','List')).split(',')
123	>
124	>	if not opts.task == 'prep':
125	>	path = config.get("Directories","samplepath")
126	>	samplesinfo = config.get("Directories","samplesinfo")
127	>	info = ParseInfo(samplesinfo,path)
128	>
129	>	if opts.task == 'plot':
130	>	repDict['queue'] = 'all.q'
131	>	for item in Plot_vars:
132	>	submit(item,repDict)
133	>
134	>
135	>	elif opts.task == 'dc':
136	>	repDict['queue'] = 'short.q'
137	>	for item in DC_vars:
138	>	if 'ZH%s'%opts.mass in item:
139	>	submit(item,repDict)
140	>	elif 'ZH' in item and opts.mass == 'all':
141	>	submit(item,repDict)
142	>
143	>	elif opts.task == 'prep':
144	>	if ( opts.samples == ""):
145	>	path = config.get("Directories","PREPin")
146	>	samplesinfo = config.get("Directories","samplesinfo")
147	>	info = ParseInfo(samplesinfo,path)
148	>	for job in info:
149	>	submit(job.name,repDict)
150	>
151	>	else:
152	>	for sample in samplesList:
153	>	submit(sample,repDict)
154	>	elif opts.task == 'sys' or opts.task == 'syseval':
155	>	path = config.get("Directories","SYSin")
156	>	samplesinfo = config.get("Directories","samplesinfo")
157	>	info = ParseInfo(samplesinfo,path)
158	>	if ( opts.samples == ""):
159	>	for job in info:
160	>	if (job.subsample): continue #avoid multiple submissions form subsamples
161	>	# TO FIX FOR SPLITTED SAMPLE
162	>	submit(job.name,repDict)
163	>	else:
164	>	for sample in samplesList:
165	>	submit(sample,repDict)
166	>
167	>	elif opts.task == 'eval':
168	>	path = config.get("Directories","MVAin")
169	>	samplesinfo = config.get("Directories","samplesinfo")
170	>	info = ParseInfo(samplesinfo,path)
171	>	if ( opts.samples == ""):
172	>	for job in info:
173	>	if (job.subsample): continue #avoid multiple submissions from subsamples
174	>	if(info.checkSplittedSampleName(job.identifier)): # if multiple entries for one name  (splitted samples) use the identifier to submit
175	>	print '@INFO: Splitted samples: submit through identifier'
176	>	submit(job.identifier,repDict)
177	>	else: submit(job.name,repDict)
178	>	else:
179	>	for sample in samplesList:
180	>	submit(sample,repDict)
181	>
182	>
183	>	elif( opts.task == 'split' ):
184	>	path = config.get("Directories","SPLITin")
185	>	samplesinfo = config.get("Directories","samplesinfo")
186	>	repDict['job_id']=opts.nevents_split
187	>	info = ParseInfo(samplesinfo,path)
188	>	if ( opts.samples == "" ):
189	>	for job in info:
190	>	if (job.subsample): continue #avoid multiple submissions from subsamples
191	>	submit(job.name,repDict)
192	>	else:
193	>	for sample in samplesList:
194	>	submit(sample,repDict)
195	>
196	>	#BDT optimisation
197	>	elif opts.task == 'mva_opt':
198	>	total_number_of_steps=1
199	>	setting = ''
200	>	for par in (config.get('Optimisation','parameters').split(',')):
201	>	scan_par=eval(config.get('Optimisation',par))
202	>	setting+=par+'='+str(scan_par[0])+':'
203	>	if len(scan_par) > 1 and scan_par[2] != 0:
204	>	total_number_of_steps+=scan_par[2]
205	>	setting=setting[:-1] # eliminate last column at the end of the setting string
206	>	print setting
207	>	repDict['additional']=setting
208	>	repDict['job_id']=config.get('Optimisation','training')
209	>	submit('OPT_main_set',repDict)
210	>	main_setting=setting
211	>
212	>	#Scanning all the parameters found in the training config in the Optimisation sector
213	>	for par in (config.get('Optimisation','parameters').split(',')):
214	>	scan_par=eval(config.get('Optimisation',par))
215	>	print par
216	>	if len(scan_par) > 1 and scan_par[2] != 0:
217	>	for step in range(scan_par[2]):
218	>	value = (scan_par[0])+((1+step)*(scan_par[1]-scan_par[0])/scan_par[2])
219	>	print value
220	>	setting=re.sub(par+'.*?:',par+'='+str(value)+':',main_setting)
221	>	repDict['additional']=setting
222	>	#                               repDict['job_id']=config.get('Optimisation','training')
223	>	submit('OPT_'+par+str(value),repDict)
224	>	#                               submit(config.get('Optimisation','training'),repDict)
225	>	print setting
226	>
227
228	<	for job in info:
229	<	submit(job.name,repDict)
228	>	os.system('qstat')
229	>	if (opts.philipp_love_progress_bars):
230	>	os.system('./qstat.py')

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