| 92 |
|
shutil.copyfile('/scratch/%s/%s'%(getpass.getuser(),os.path.basename(btagLibrary)),btagLibrary) |
| 93 |
|
os.chdir(submitDir) |
| 94 |
|
logPath = config.get("Directories","logpath") |
| 95 |
+ |
logo = open('%s/data/submit.txt' %config.get('Directories','vhbbpath')).readlines() |
| 96 |
+ |
counter = 0 |
| 97 |
+ |
|
| 98 |
|
#check if the logPath exist. If not exit |
| 99 |
|
if( not os.path.isdir(logPath) ): |
| 100 |
< |
print 'ERROR: ' + logPath + ': dir not found.' |
| 101 |
< |
print 'ERROR: Create it before submitting ' |
| 102 |
< |
print 'Exit' |
| 103 |
< |
sys.exit(-1) |
| 100 |
> |
print 'ERROR: ' + logPath + ': dir not found.' |
| 101 |
> |
print 'ERROR: Create it before submitting ' |
| 102 |
> |
print 'Exit' |
| 103 |
> |
sys.exit(-1) |
| 104 |
> |
|
| 105 |
|
|
| 106 |
|
repDict = {'en':en,'logpath':logPath,'job':'','task':opts.task,'queue': 'all.q','timestamp':timestamp,'additional':'','job_id':''} |
| 107 |
|
def submit(job,repDict): |
| 108 |
< |
repDict['job'] = job |
| 109 |
< |
command = 'qsub -V -cwd -q %(queue)s -l h_vmem=6G -N %(job)s_%(en)s%(task)s -o %(logpath)s/%(timestamp)s_%(job)s_%(en)s_%(task)s.out -e %(logpath)s/%(timestamp)s_%(job)s_%(en)s_%(task)s.err runAll.sh %(job)s %(en)s ' %(repDict) + opts.task + ' ' + repDict['job_id'] + ' ' + repDict['additional'] |
| 110 |
< |
print command |
| 111 |
< |
subprocess.call([command], shell=True) |
| 108 |
> |
global counter |
| 109 |
> |
repDict['job'] = job |
| 110 |
> |
nJob = counter % len(logo) |
| 111 |
> |
counter += 1 |
| 112 |
> |
if opts.philipp_love_progress_bars: |
| 113 |
> |
repDict['name'] = '"%s"' %logo[nJob].strip() |
| 114 |
> |
else: |
| 115 |
> |
repDict['name'] = '%(job)s_%(en)s%(task)s' %repDict |
| 116 |
> |
command = 'qsub -V -cwd -q %(queue)s -l h_vmem=6G -N %(name)s -o %(logpath)s/%(timestamp)s_%(job)s_%(en)s_%(task)s.out -e %(logpath)s/%(timestamp)s_%(job)s_%(en)s_%(task)s.err runAll.sh %(job)s %(en)s ' %(repDict) + opts.task + ' ' + repDict['job_id'] + ' ' + repDict['additional'] |
| 117 |
> |
print command |
| 118 |
> |
subprocess.call([command], shell=True) |
| 119 |
|
|
| 120 |
|
if opts.task == 'train': |
| 121 |
|
train_list = (config.get('MVALists','List_for_submitscript')).split(',') |
| 168 |
|
info = ParseInfo(samplesinfo,path) |
| 169 |
|
if ( opts.samples == ""): |
| 170 |
|
for job in info: |
| 171 |
< |
if (job.subsample): continue #avoid multiple submissions form subsamples |
| 172 |
< |
# TO FIX FOR SPLITTED SAMPLE |
| 171 |
> |
if (job.subsample): |
| 172 |
> |
continue #avoid multiple submissions form subsamples |
| 173 |
> |
# TO FIX FOR SPLITTED SAMPLE |
| 174 |
|
submit(job.name,repDict) |
| 175 |
|
else: |
| 176 |
|
for sample in samplesList: |
| 182 |
|
info = ParseInfo(samplesinfo,path) |
| 183 |
|
if ( opts.samples == ""): |
| 184 |
|
for job in info: |
| 185 |
< |
if (job.subsample): continue #avoid multiple submissions from subsamples |
| 186 |
< |
if(info.checkSplittedSampleName(job.identifier)): # if multiple entries for one name (splitted samples) use the identifier to submit |
| 187 |
< |
print '@INFO: Splitted samples: submit through identifier' |
| 188 |
< |
submit(job.identifier,repDict) |
| 189 |
< |
else: submit(job.name,repDict) |
| 185 |
> |
if (job.subsample): |
| 186 |
> |
continue #avoid multiple submissions from subsamples |
| 187 |
> |
if(info.checkSplittedSampleName(job.identifier)): # if multiple entries for one name (splitted samples) use the identifier to submit |
| 188 |
> |
print '@INFO: Splitted samples: submit through identifier' |
| 189 |
> |
submit(job.identifier,repDict) |
| 190 |
> |
else: submit(job.name,repDict) |
| 191 |
|
else: |
| 192 |
|
for sample in samplesList: |
| 193 |
|
submit(sample,repDict) |
