| 1 |
#!/usr/bin/python
|
| 2 |
|
| 3 |
# System libraries to interact with the shell
|
| 4 |
import sys
|
| 5 |
import os
|
| 6 |
from os import popen
|
| 7 |
import commands
|
| 8 |
import time
|
| 9 |
|
| 10 |
jobnumbers=[]
|
| 11 |
totaljobnumber=0
|
| 12 |
totjobs=0;
|
| 13 |
|
| 14 |
def checklist(joblist,currlist):
|
| 15 |
jobfinished=[]
|
| 16 |
for i in joblist:
|
| 17 |
if i in currlist: ## if the job is still active
|
| 18 |
currlist.remove(int(i))## we don't need this anymore on the list of currently running jobs (we already know it's running)
|
| 19 |
else:#job is finished
|
| 20 |
jobfinished.append(int(i))
|
| 21 |
for job in jobfinished:
|
| 22 |
joblist.remove(int(job))
|
| 23 |
print "Jobs left:"+str(len(joblist))+" / "+str(totjobs)
|
| 24 |
|
| 25 |
def create_config():
|
| 26 |
command="../../Plotting/Create_All_Plots.exec 1" #this is the command to give us the configuration file :-)
|
| 27 |
print "Creating the configuration"
|
| 28 |
pipe=popen(command)
|
| 29 |
print "Everything is sent up. Your jobs will be submitted in a minute!"
|
| 30 |
|
| 31 |
def lay_out_groundwork():
|
| 32 |
if os.path.isfile("../last_configuration.C"):
|
| 33 |
result="fff"
|
| 34 |
while(result!="" and result!="new"):
|
| 35 |
result=raw_input("Configuration file exists - would you like to use this one or create a new one? if you want to create a new one, please write new, if you want to use the existing one please either hit enter\n new = generate a new file \n [ENTER] = use existing file: \n")
|
| 36 |
if result=="":
|
| 37 |
print "You've hit enter! Using the existing version ... ";
|
| 38 |
else:
|
| 39 |
print "You've written \"new\" - creating a new file!";
|
| 40 |
create_config()
|
| 41 |
else:
|
| 42 |
create_config()
|
| 43 |
|
| 44 |
def printUsage():
|
| 45 |
print "Please provide the following argument: total number of jobs"
|
| 46 |
|
| 47 |
if(len(sys.argv) != 2 or sys.argv[1] == "-h"):
|
| 48 |
printUsage()
|
| 49 |
sys.exit(-1)
|
| 50 |
else:
|
| 51 |
lay_out_groundwork()
|
| 52 |
print "Will now recompile to account for any possible changes in the configuration (or setup)"
|
| 53 |
commands.getoutput("make")
|
| 54 |
print "Going to submit "+str(sys.argv[1])+" jobs : "
|
| 55 |
fusecommand="hadd -f output/all_limits.root"
|
| 56 |
path=str(os.path.abspath(os.curdir))
|
| 57 |
path=path.replace("/","\/");
|
| 58 |
confcommand="cat Source/calcLim.sh_template | sed 's/SETJZBCUT/"+str(sys.argv[1])+"/' | sed 's/SETNJOBS/"+str(sys.argv[1])+"/' | sed 's/THISDIR/"+str(path)+"/' > output/calcLim.sh"
|
| 59 |
commands.getoutput(confcommand)
|
| 60 |
for ijob in range(0,int(sys.argv[1])):
|
| 61 |
pipe=popen("qsub -e /tmp/ -o /tmp/ -N " + "LimCalc"+str(ijob)+ " " + os.curdir + "/output/calcLim.sh"+ " "+str(ijob))
|
| 62 |
for l in pipe.readlines():
|
| 63 |
if l.find("Your job")>-1:
|
| 64 |
thisjobnumber=int(l[l.index('job ')+4:l.index(' (')])
|
| 65 |
print ": Submitted job "+str(ijob)+" with job number: "+str(thisjobnumber)
|
| 66 |
jobnumbers.append(thisjobnumber)
|
| 67 |
fusecommand=fusecommand+" output/DistributedLimits_job"+str(ijob)+"_of_"+str(sys.argv[1])+".root"
|
| 68 |
counter=0
|
| 69 |
totjobs=sys.argv[1]
|
| 70 |
while(len(jobnumbers)>0 and counter<300) :
|
| 71 |
counter+=1
|
| 72 |
currlist=[]
|
| 73 |
pipe=popen("qstat | grep `whoami` | awk '{print $1}'")
|
| 74 |
for line in pipe.readlines():
|
| 75 |
currlist.append(int(line))
|
| 76 |
checklist(jobnumbers,currlist)
|
| 77 |
time.sleep(60)
|
| 78 |
print "All jobs have finished - need to merge everything and place it in your scratch directory!"
|
| 79 |
print commands.getoutput(fusecommand)
|
| 80 |
process_command="./produce_limit_plots.exec output/all_limits.root"
|
| 81 |
commands.getoutput(process_command)
|
| 82 |
print "All done!" |
