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Comparing UserCode/cbrown/AnalysisFramework/Plotting/Modules/Systematics.C (file contents):
Revision 1.17 by buchmann, Wed Aug 17 14:55:51 2011 UTC vs.
Revision 1.53 by fronga, Tue Nov 22 13:02:09 2011 UTC

# Line 1 | Line 1
1   #include <iostream>
2   #include <vector>
3   #include <sys/stat.h>
4 + #include <algorithm>
5 + #include <cmath>
6  
7   #include <TMath.h>
8   #include <TColor.h>
# Line 83 | Line 85 | Double_t Interpolate(Double_t x, TH1 *hi
85  
86   //____________________________________________________________________________________
87   // Plotting with all contributions, i.e. sidebands, peak, osof,ossf ... (for a systematic)
88 < float allcontributionsplot(TTree* events, TCut kBaseCut, TCut kMassCut, TCut kSidebandCut, TCut JZBPosCut, TCut JZBNegCut) {
88 > float allcontributionsplot(TTree* events, TCut kBaseCut, TCut kMassCut, TCut kSidebandCut, TCut JZBPosCut, TCut JZBNegCut, int flipped) {
89          iplot++;
90          int count=iplot;
91 +        string locmcjzbexpression=mcjzbexpression;
92          // Define new histogram
93          string hname=GetNumericHistoName();
94          TH1F* hossfp = new TH1F(hname.c_str(),hname.c_str(),1,-14000,14000);
95 <        events->Draw(TString(mcjzbexpression)+">>"+TString(hname),kBaseCut&&kMassCut&&JZBPosCut&&cutOSSF,"goff");
95 >        events->Draw("("+TString(locmcjzbexpression)+")>>"+TString(hname),kBaseCut&&kMassCut&&JZBPosCut&&cutOSSF,"goff");
96          hname=GetNumericHistoName();
97          TH1F* hossfn = new TH1F(hname.c_str(),hname.c_str(),1,-14000,14000);
98 <        events->Draw(TString(mcjzbexpression)+">>"+TString(hname),kBaseCut&&kMassCut&&JZBNegCut&&cutOSSF,"goff");
98 >        events->Draw("("+TString(locmcjzbexpression)+")>>"+TString(hname),kBaseCut&&kMassCut&&JZBNegCut&&cutOSSF,"goff");
99  
100          hname=GetNumericHistoName();
101          TH1F* hosofp = new TH1F(hname.c_str(),hname.c_str(),1,-14000,14000);
102 <        events->Draw(TString(mcjzbexpression)+">>"+TString(hname),kBaseCut&&kMassCut&&JZBPosCut&&cutOSOF,"goff");
102 >        events->Draw("("+TString(locmcjzbexpression)+")>>"+TString(hname),kBaseCut&&kMassCut&&JZBPosCut&&cutOSOF,"goff");
103          hname=GetNumericHistoName();
104          TH1F* hosofn = new TH1F(hname.c_str(),hname.c_str(),1,-14000,14000);
105 <        events->Draw(TString(mcjzbexpression)+">>"+TString(hname),kBaseCut&&kMassCut&&JZBNegCut&&cutOSOF,"goff");
103 <
104 <        hname=GetNumericHistoName();
105 <        TH1F* sbhossfp = new TH1F(hname.c_str(),hname.c_str(),1,-14000,14000);
106 <        events->Draw(TString(mcjzbexpression)+">>"+TString(hname),kBaseCut&&kSidebandCut&&JZBPosCut&&cutOSSF,"goff");
107 <        hname=GetNumericHistoName();
108 <        TH1F* sbhossfn = new TH1F(hname.c_str(),hname.c_str(),1,-14000,14000);
109 <        events->Draw(TString(mcjzbexpression)+">>"+TString(hname),kBaseCut&&kSidebandCut&&JZBNegCut&&cutOSSF,"goff");
110 <
111 <        hname=GetNumericHistoName();
112 <        TH1F* sbhosofp = new TH1F(hname.c_str(),hname.c_str(),1,-14000,14000);
113 <        events->Draw(TString(mcjzbexpression)+">>"+TString(hname),kBaseCut&&kSidebandCut&&JZBPosCut&&cutOSOF,"goff");
114 <        hname=GetNumericHistoName();
115 <        TH1F* sbhosofn = new TH1F(hname.c_str(),hname.c_str(),1,-14000,14000);
116 <        events->Draw(TString(mcjzbexpression)+">>"+TString(hname),kBaseCut&&kSidebandCut&&JZBNegCut&&cutOSOF,"goff");
105 >        events->Draw("("+TString(locmcjzbexpression)+")>>"+TString(hname),kBaseCut&&kMassCut&&JZBNegCut&&cutOSOF,"goff");
106          
107 <        float obs = hossfp->Integral();
108 <        float pred= hossfn->Integral() + (1.0/3)*( hosofp->Integral() - hosofn->Integral() + sbhossfp->Integral() - sbhossfn->Integral() + sbhosofp->Integral() - sbhosofn->Integral());
107 >        float obs=0;
108 >        float pred=0;
109 >        flag_this_change(__FUNCTION__,__LINE__,true);//PlottingSetup::RestrictToMassPeak
110 >        if(PlottingSetup::RestrictToMassPeak) {
111 >          hname=GetNumericHistoName();
112 >          TH1F* sbhossfp = new TH1F(hname.c_str(),hname.c_str(),1,-14000,14000);
113 >          events->Draw("("+TString(locmcjzbexpression)+")>>"+TString(hname),kBaseCut&&kSidebandCut&&JZBPosCut&&cutOSSF,"goff");
114 >          hname=GetNumericHistoName();
115 >          TH1F* sbhossfn = new TH1F(hname.c_str(),hname.c_str(),1,-14000,14000);
116 >          events->Draw("("+TString(locmcjzbexpression)+")>>"+TString(hname),kBaseCut&&kSidebandCut&&JZBNegCut&&cutOSSF,"goff");
117 >          
118 >          hname=GetNumericHistoName();
119 >          TH1F* sbhosofp = new TH1F(hname.c_str(),hname.c_str(),1,-14000,14000);
120 >          events->Draw("("+TString(locmcjzbexpression)+")>>"+TString(hname),kBaseCut&&kSidebandCut&&JZBPosCut&&cutOSOF,"goff");
121 >          hname=GetNumericHistoName();
122 >          TH1F* sbhosofn = new TH1F(hname.c_str(),hname.c_str(),1,-14000,14000);
123 >          events->Draw("("+TString(locmcjzbexpression)+")>>"+TString(hname),kBaseCut&&kSidebandCut&&JZBNegCut&&cutOSOF,"goff");
124 >          
125 >          obs = hossfp->Integral();
126 >          pred= hossfn->Integral() + (1.0/3)*( hosofp->Integral() - hosofn->Integral() + sbhossfp->Integral() - sbhossfn->Integral() + sbhosofp->Integral() - sbhosofn->Integral());
127 >
128 >          if(flipped>0) {
129 >                obs = hossfn->Integral();
130 >                pred= hossfp->Integral() - (1.0/3)*( hosofp->Integral() - hosofn->Integral() + sbhossfp->Integral() - sbhossfn->Integral() + sbhosofp->Integral() - sbhosofn->Integral());
131 >          }
132 >          delete sbhossfp,sbhossfn,sbhosofp,sbhosofn;
133 >        } else {
134 >          obs = hossfp->Integral();
135 >          pred= hossfn->Integral() + (hosofp->Integral() - hosofn->Integral());
136 >          if(flipped>0) {
137 >                obs = hossfn->Integral();
138 >                pred= hossfp->Integral() - (hosofp->Integral() - hosofn->Integral());;
139 >          }
140 >        }
141          
142          delete hossfp,hossfn,hosofp,hosofn;
122        delete sbhossfp,sbhossfn,sbhosofp,sbhosofn;
143          return obs-pred;
144   }
145  
146  
147   //____________________________________________________________________________________
148   // Efficiency plot
149 < TH1F* plotEff(TTree* events, TCut kbase, TString informalname) {
149 > TH1F* plotEff(TTree* events, TCut kbase, TString informalname, int flipped) {
150          iplot++;
151          int count=iplot;
152 +        iplot++;
153 +        int count2=iplot;
154          // Define new histogram
155          char hname[30]; sprintf(hname,"hJzbEff%d",count);
156 <        TH1F* hJzbEff = new TH1F(hname,"JZB selection efficiency ; JZB (GeV/c); Efficiency",
157 <                                                         nBins,jzbMin,jzbMax);
156 >        char hname2[30]; sprintf(hname2,"hJzbEff%d",count2);
157 >        TH1F* hJzbEff = new TH1F(hname,"JZB selection efficiency ; JZB [GeV]; Efficiency",nBins,jzbMin,jzbMax);
158 >        TH1F* hJzbEff2= new TH1F(hname2,"JZB selection efficiency ; JZB [GeV]; Efficiency",1,-14000,14000);
159          Float_t step = (jzbMax-jzbMin)/static_cast<Float_t>(nBins);
160 <        
161 <        events->Draw(mcjzbexpression.c_str(),"genJZB>-400"&&kbase,"goff");
162 <        Float_t maxEff = events->GetSelectedRows();
160 >
161 >        if(flipped==0) events->Draw((mcjzbexpression+">>"+(string)hname2).c_str(),("genJZB>-400"&&kbase),"goff");
162 >        else events->Draw(("(-"+mcjzbexpression+")>>"+(string)hname2).c_str(),("genJZB>-400"&&kbase),"goff");
163 >        Float_t maxEff = hJzbEff2->Integral();
164          if(verbose>0) dout << hname << " (" << informalname <<") " << maxEff <<  std::endl;
165          
166          if(verbose>0) dout <<  "JZB max = " << jzbMax << std::endl;
# Line 144 | Line 168 | TH1F* plotEff(TTree* events, TCut kbase,
168          char cut[256];
169          for ( Int_t iBin = 0; iBin<nBins; ++iBin ) {
170                  sprintf(cut,"genJZB>%3f",jzbMin+iBin*step);
171 <                events->Draw(mcjzbexpression.c_str(),TCut(cut)&&kbase,"goff");
172 <                Float_t eff = static_cast<Float_t>(events->GetSelectedRows())/maxEff;
173 <                //     dout << "COUCOU " << __LINE__ << std::endl;
171 >                if(flipped==0) events->Draw((mcjzbexpression+">>"+(string)hname2).c_str(),(TCut(cut)&&kbase),"goff");
172 >                if(flipped>0) events->Draw(("(-"+mcjzbexpression+")>>"+(string)hname2).c_str(),(TCut(cut)&&kbase),"goff");
173 >                Float_t eff = static_cast<Float_t>(hJzbEff2->Integral())/maxEff;
174                  hJzbEff->SetBinContent(iBin+1,eff);
175                  hJzbEff->SetBinError(iBin+1,TMath::Sqrt(eff*(1-eff)/maxEff));
176          }
177 +        delete hJzbEff2;
178          return hJzbEff;
154        
155        
179   }
180  
181  
182 +
183 + //________________________________________________________________________________________
184 + // Master Formula
185 + void master_formula(std::vector<float> eff, float &errHi, float &errLo) {
186 +
187 +  float x0 = eff[0];
188 +  float deltaPos = 0, deltaNeg = 0;
189 +  for(int k = 0; k < (eff.size()-1)/2; k++) {
190 +    float xneg = eff[2*k+2];
191 +    float xpos = eff[2*k+1];
192 +    if(xpos-x0>0 || xneg-x0>0) {
193 +      if(xpos-x0 > xneg-x0) {
194 +        deltaPos += (xpos-x0)*(xpos-x0);
195 +      } else {
196 +        deltaPos += (xneg-x0)*(xneg-x0);
197 +      }
198 +    }
199 +    if(x0-xpos>0 || x0-xneg>0) {
200 +      if(x0-xpos > x0-xneg) {
201 +        deltaNeg += (xpos-x0)*(xpos-x0);
202 +      } else {
203 +        deltaNeg += (xneg-x0)*(xneg-x0);
204 +      }
205 +    }
206 +  }
207 +  errHi = sqrt(deltaPos);
208 +  errLo = sqrt(deltaNeg);
209 +
210 + }
211 +
212 +
213 + //________________________________________________________________________________________
214 + // Get normalization factor for the PDFs
215 + float get_norm_pdf_factor(TTree *events, int k, string addcut) {
216 +
217 +  TH1F *haux = new TH1F("haux", "", 10000, 0, 5);
218 +  char nameVar[20];
219 +  sprintf(nameVar, "pdfW[%d]", k);
220 +  events->Project("haux", nameVar, addcut.c_str());
221 +  float thisW = haux->Integral();
222 +  events->Project("haux", "pdfW[0]");
223 +  float normW = haux->Integral();
224 +
225 +  float factor=thisW/normW;
226 +
227 +  delete haux;
228 +
229 +  return factor;
230 +
231 + }
232 +
233 +
234 +
235   //________________________________________________________________________________________
236   // Pile-up efficiency
237 < float pileup(TTree *events, bool requireZ, string informalname, string addcut="",Float_t myJzbMax = 140. ) {
237 > float pileup(TTree *events, bool requireZ, string informalname, int flipped, string addcut="",Float_t myJzbMax = 140. ) {
238          nBins = 16;
239          jzbMax = myJzbMax;
240          
241          // Acceptance cuts
242 <        TCut kbase("abs(genMll-91.2)<20&&genNjets>2&&genZPt>0&&abs(mll-91.2)<20&&((id1+1)*(id2+1)*ch1*ch2)!=-2");
242 >        flag_this_change(__FUNCTION__,__LINE__,true);//PlottingSetup::RestrictToMassPeak
243 >        TCut kbase(PlottingSetup::genMassCut&&"genNjets>2&&genZPt>0"&&cutmass&&cutOSSF);
244          if(addcut!="") kbase=kbase&&addcut.c_str();//this is mostly for SUSY scans (adding requirements on masses)
245          
246 <        if(requireZ) kbase=kbase&&"TMath::Abs(genMID)==23";
247 <        TH1F* hLM4 = plotEff(events,kbase,informalname);
246 >        if(requireZ&&PlottingSetup::RestrictToMassPeak) kbase=kbase&&"TMath::Abs(genMID)==23";
247 >        TH1F* hLM4 = plotEff(events,kbase,informalname,flipped);
248          hLM4->SetMinimum(0.);
249          
250          // Nominal function
# Line 178 | Line 255 | float pileup(TTree *events, bool require
255          
256          // Pimped-up function
257          TF1* funcUp = (TF1*)func->Clone();
258 <        funcUp->SetParameter( 0., func->GetParameter(0)/1.1); // 10% systematic error (up in sigma => 0.1 in erfc)
258 >        funcUp->SetParameter( 0, func->GetParameter(0)/1.1); // 10% systematic error (up in sigma => 0.1 in erfc)
259          if(!automatized) dout << "  PU: " << funcUp->Eval(jzbSel) << " " <<  func->Eval(jzbSel)
260          << "(" << (funcUp->Eval(jzbSel)-func->Eval(jzbSel))/func->Eval(jzbSel)*100. << "%)" << std::endl;
261          
262 <        return (funcUp->Eval(jzbSel)-func->Eval(jzbSel))/func->Eval(jzbSel)*100.;
262 >        return (funcUp->Eval(jzbSel)-func->Eval(jzbSel))/func->Eval(jzbSel);
263          
264   }
265  
266   //____________________________________________________________________________________
267   // Effect of peak shifting
268 < void PeakError(TTree *events,float &result, string mcjzb, float peakerr,string addcut="") {
268 > void PeakError(TTree *events,float &result, string mcjzb, float peakerr,int flipped,string addcut="") {
269 >    //Note: the cut used here is something like (JZBEXPRESSION+(peakerr)>50) without all the other cuts, to increase statistics (particularly for scans)
270          TString peakup("("+TString(mcjzb)+"+"+TString(any2string(TMath::Abs(peakerr)))+")"+geq_or_leq()+TString(any2string(jzbSel)));
271          TString peakdown("("+TString(mcjzb)+"-"+TString(any2string(TMath::Abs(peakerr)))+")"+geq_or_leq()+TString(any2string(jzbSel)));
272          TString peakcentral("("+TString(mcjzb)+")"+geq_or_leq()+TString(any2string(jzbSel)));
273          TString npeakup("("+TString(mcjzb)+"+"+TString(any2string(TMath::Abs(peakerr)))+")"+ngeq_or_leq()+"-"+TString(any2string(jzbSel)));
274          TString npeakdown("("+TString(mcjzb)+"-"+TString(any2string(TMath::Abs(peakerr)))+")"+ngeq_or_leq()+"-"+TString(any2string(jzbSel)));
275          TString npeakcentral("("+TString(mcjzb)+")"+ngeq_or_leq()+"-"+TString(any2string(jzbSel)));
198        
276          nBins = 1;
277          string informalname="PeakErrorCalculation";
278          float resup,resdown,rescent;
# Line 212 | Line 289 | void PeakError(TTree *events,float &resu
289              negcut=npeakup;
290            }
291            float res;
292 <          if(addcut=="") res=allcontributionsplot(events,cutnJets,cutmass,sidebandcut,poscut.c_str(),negcut.c_str());
293 <          else res=allcontributionsplot(events,cutnJets&&addcut.c_str(),cutmass,sidebandcut,poscut.c_str(),negcut.c_str());
292 >          if(addcut=="") res=allcontributionsplot(events,cutnJets,cutmass,sidebandcut,poscut.c_str(),negcut.c_str(),flipped);
293 >          else res=allcontributionsplot(events,cutnJets&&addcut.c_str(),cutmass,sidebandcut,poscut.c_str(),negcut.c_str(),flipped);
294            if(i==0) rescent=res;
295            else if(i==1) resdown=res;
296            else if(i==2) resup=res;
297          }
298 <        if(TMath::Abs(rescent-resup)>TMath::Abs(rescent-resdown)) result=(TMath::Abs(rescent-resup)/rescent)*100;
299 <        else result=(TMath::Abs(rescent-resdown)/rescent)*100;
298 >        if(TMath::Abs(rescent-resup)>TMath::Abs(rescent-resdown)) result=(TMath::Abs(rescent-resup)/(float)rescent);
299 >        else result=(TMath::Abs(rescent-resdown)/(float)rescent);
300 >        cout << "    " << result << endl;
301 > }
302 >
303 >
304 > void  MCPartialefficiency(TTree *events,float &result, float &resulterr,int flipped, string mcjzb,bool requireZ,int Neventsinfile, string addcut="", int k = 0, int type = 0) {
305 >   if(!events) {
306 >      write_error(__FUNCTION__,"Tree passed for efficiency calculation is invalid!");
307 >      result=0;resulterr=0;
308 >      return;
309 >   }
310 >  
311 >   char jzbSelStr[256]; sprintf(jzbSelStr,"%f",jzbSel);
312 >   // All acceptance cuts at gen. level
313 >   //TCut kbase("abs(genMll-91.2)<20&&genNjets>2&&genZPt>0&&genJZB"+geq_or_leq()+TString(jzbSelStr)+"&&genId1==-genId2");
314 >   TCut kbase("");
315 >   if(requireZ&&PlottingSetup::RestrictToMassPeak) kbase=kbase&&"TMath::Abs(genMID)==23";
316 >   if(addcut!="") kbase=kbase&&addcut.c_str();//this is mostly for SUSY scans (adding requirements on masses)
317 >   // Corresponding reco. cuts
318 >  
319 >   TCut acceptance("genPt2 != 0");
320 >   TCut massId(cutmass&&cutOSSF);
321 >   TCut njets(cutnJets);
322 >   TCut jzbp;
323 >   TCut jzbn;
324 >   if(flipped==0) {
325 >        jzbp=TCut((TString(mcjzb)+geq_or_leq()+TString(jzbSelStr)));
326 >        jzbn=TCut((TString(mcjzb)+ngeq_or_leq()+TString("-")+TString(jzbSelStr)));
327 >   } else {
328 >        jzbp=TCut(TString(mcjzb)+ngeq_or_leq()+TString("-")+TString(jzbSelStr));
329 >        jzbn=TCut(TString(mcjzb)+geq_or_leq()+TString(jzbSelStr));
330 >   }
331 >   float ntotal = events->Draw("pt1", kbase, "goff");
332 >   TCut theCut;
333 >   switch(type) {
334 >     case 1:
335 >       theCut = kbase+acceptance;
336 >       break;
337 >     case 2:
338 >       theCut = kbase+massId;
339 >       break;
340 >     case 3:
341 >       theCut = kbase+massId+njets;
342 >       break;
343 >     case 4:
344 >       theCut = kbase+massId+njets+jzbn;
345 >       break;
346 >     default:
347 >       theCut = kbase+massId+njets+jzbn;
348 >       break;
349 >   }  
350 >      
351 >   string stheCut(theCut);
352 >   char var[20];
353 >   sprintf(var, "pdfW[%d]", k);
354 >
355 >   string svar(var);
356 >   string newtheCut;
357 >   if(k>0) newtheCut = "(" + stheCut + ")*" + svar;
358 >   else newtheCut = "(" + stheCut + ")"; // for k==0 or even k==-1 we don't need to evaluate PDFs
359 >
360 >   TH1F *effh= new TH1F("effh","effh",1,-14000,14000);
361 >   if(k>=0) events->Draw((mcjzbexpression+">>effh").c_str(), newtheCut.c_str(),"goff");
362 >   else events->Draw((mcjzbexpression+">>effh").c_str(), theCut,"goff");
363 >   Float_t sel = effh->Integral();
364 >   Float_t nsel=0;
365 >   //Corrections due to normalization in the PDF. This has to be applied as well to the number of events in a file if the definition changes at some point.
366 >   float normFactor = 1;
367 >   if(k>=0) get_norm_pdf_factor(events, k, addcut);
368 >   sel = sel/normFactor;
369 >
370 >   result=(sel)/ntotal;
371 >   resulterr=TMath::Sqrt(sel/ntotal*(1+sel/ntotal)/ntotal);
372 >
373 >   delete effh;
374   }
375  
376   //____________________________________________________________________________________
377   // Total selection efficiency (MC)
378 < void MCefficiency(TTree *events,float &result, float &resulterr,string mcjzb,bool requireZ,int Neventsinfile, string addcut="") {
378 > //returns the efficiency WITHOUT signal contamination, and the result and resulterr contain the result and the corresponding error
379 > Value MCefficiency(TTree *events,float &result, float &resulterr, int flipped, string mcjzb,bool requireZ,int Neventsinfile, string addcut="", int k = 0) {
380 >        if(!events) {
381 >          write_error(__FUNCTION__,"Tree passed for efficiency calculation is invalid!");
382 >          result=0;
383 >          resulterr=0;
384 >          return Value(0,0);
385 >        }
386          
387          char jzbSelStr[256]; sprintf(jzbSelStr,"%f",jzbSel);
388          // All acceptance cuts at gen. level
389          //TCut kbase("abs(genMll-91.2)<20&&genNjets>2&&genZPt>0&&genJZB"+geq_or_leq()+TString(jzbSelStr)+"&&genId1==-genId2");
390          TCut kbase("");
391 <        if(requireZ) kbase=kbase&&"TMath::Abs(genMID)==23";
391 >        
392 >        flag_this_change(__FUNCTION__,__LINE__,true);//PlottingSetup::RestrictToMassPeak
393 >        if(requireZ&&PlottingSetup::RestrictToMassPeak) kbase=kbase&&"TMath::Abs(genMID)==23";
394          if(addcut!="") kbase=kbase&&addcut.c_str();//this is mostly for SUSY scans (adding requirements on masses)
395          // Corresponding reco. cuts
396 <        TCut ksel("pfJetGoodNum>2&&abs(mll-91.2)<20&&id1==id2&&"+TString(mcjzb)+geq_or_leq()+TString(jzbSelStr));
397 <        TCut ksel2("pfJetGoodNum>2&&abs(mll-91.2)<20&&id1==id2&&"+TString(mcjzb)+ngeq_or_leq()+TString("-")+TString(jzbSelStr));
398 <        events->Draw(mcjzbexpression.c_str(),kbase&&ksel,"goff");
399 <        Float_t sel = events->GetSelectedRows();
400 <        events->Draw(mcjzbexpression.c_str(),kbase&&ksel2,"goff");
401 <        Float_t nsel = events->GetSelectedRows();
402 < //      events->Draw(mcjzbexpression.c_str(),kbase,"goff");
403 < //      Float_t tot = events->GetSelectedRows();
396 >        
397 >        flag_this_change(__FUNCTION__,__LINE__,true);//PlottingSetup::RestrictToMassPeak
398 >        TCut ksel;//("pfJetGoodNum>2"&&cutmass&&"id1==id2&&"+TString(mcjzb)+geq_or_leq()+TString(jzbSelStr));
399 >        TCut ksel2;//("pfJetGoodNum>2"&&cutmass&&"id1==id2&&"+TString(mcjzb)+ngeq_or_leq()+TString("-")+TString(jzbSelStr));
400 >        flag_this_change(__FUNCTION__,__LINE__,true);//PlottingSetup::RestrictToMassPeak
401 >        if(PlottingSetup::RestrictToMassPeak||!ConsiderSignalContaminationForLimits) {
402 >          ksel=TCut("pfJetGoodNum>2"&&cutmass&&"id1==id2&&"+TString(mcjzb)+geq_or_leq()+TString(jzbSelStr));
403 >          ksel2=TCut("pfJetGoodNum>2"&&cutmass&&"id1==id2&&"+TString(mcjzb)+ngeq_or_leq()+TString("-")+TString(jzbSelStr));
404 >          if(flipped>0) {
405 >                ksel=TCut("pfJetGoodNum>2"&&cutmass&&"id1==id2&&"+TString(mcjzb)+ngeq_or_leq()+TString("-")+TString(jzbSelStr));
406 >                ksel2=TCut("pfJetGoodNum>2"&&cutmass&&"id1==id2&&"+TString(mcjzb)+geq_or_leq()+TString(jzbSelStr));
407 >          }
408 >        } else {
409 >          //for off peak analysis we don't use the OSSF condition here yet so we can recycle these two cuts for the em condition!
410 >          ksel=TCut("pfJetGoodNum>2"&&cutmass&&(TString(mcjzb)+geq_or_leq()+TString(jzbSelStr)));
411 >          ksel2=TCut("pfJetGoodNum>2"&&cutmass&&(TString(mcjzb)+ngeq_or_leq()+TString("-")+TString(jzbSelStr)));
412 >          if(flipped>0) {
413 >                ksel=TCut("pfJetGoodNum>2"&&cutmass&&(TString(mcjzb)+ngeq_or_leq()+TString("-")+TString(jzbSelStr)));
414 >                ksel2=TCut("pfJetGoodNum>2"&&cutmass&&(TString(mcjzb)+geq_or_leq()+TString(jzbSelStr)));
415 >          }
416 >        }
417 >            
418 >        TCut posSide = kbase&&ksel;
419 >        TCut negSide = kbase&&ksel2;
420 >        string sposSide(posSide);
421 >        string snegSide(negSide);
422 >        char var[20];
423 >        sprintf(var, "pdfW[%d]", k);
424 >        if(k==-1) sprintf(var,"1.0");//case in which we don't want to evaluate PDFs
425 >        string svar(var);
426 >        string newPosSide = "((id1==id2)&&(" + sposSide + "))*" + svar;
427 >        string newNegSide = "((id1==id2)&&(" + snegSide + "))*" + svar;
428 >        string emnewPosSide = "((id1!=id2)&&(" + sposSide + "))*" + svar; // only used for off peak analysis
429 >        string emnewNegSide = "((id1!=id2)&&(" + snegSide + "))*" + svar; // only used for off peak analysis
430 >
431 >        TH1F *effh= new TH1F("effh","effh",1,-14000,14000);
432 >        if(k>=0)events->Draw((mcjzbexpression+">>effh").c_str(), TCut(newPosSide.c_str())*PlottingSetup::Weight,"goff");
433 >        else events->Draw((mcjzbexpression+">>effh").c_str(), TCut((sposSide+"&&(id1==id2)").c_str())*PlottingSetup::Weight,"goff");//the OSSF condition is added for the offpeak analysis, in onpeak case it's there already but doesn't change anything.
434 >
435 >        Float_t sel = effh->Integral();
436 >        Float_t nsel=0;
437 >        
438 >        ///----------------------------------------------- THIS PART REQUIRES STUDYING! -------------------------
439 >        
440 >        if(ConsiderSignalContaminationForLimits) {
441 >          flag_this_change(__FUNCTION__,__LINE__,true);//PlottingSetup::RestrictToMassPeak
442 >          if(PlottingSetup::RestrictToMassPeak) {
443 >            events->Draw((mcjzbexpression+">>effh").c_str(), (TCut(newNegSide.c_str()))*PlottingSetup::Weight,"goff");
444 >            nsel += effh->Integral();
445 >          } else {
446 >            events->Draw((mcjzbexpression+">>effh").c_str(), (TCut(newNegSide.c_str()))*PlottingSetup::Weight,"goff");
447 >            nsel += effh->Integral();
448 >            events->Draw((mcjzbexpression+">>effh").c_str(), (TCut(emnewPosSide.c_str()))*PlottingSetup::Weight,"goff");
449 >            nsel += effh->Integral();
450 >            events->Draw((mcjzbexpression+">>effh").c_str(), (TCut(emnewNegSide.c_str()))*PlottingSetup::Weight,"goff");
451 >            nsel -= effh->Integral();
452 >          }
453 >        }
454 >
455 >        //Corrections due to normalization in the PDF. This has to be applied as well to the number of events in a file if the definition changes at some point.
456 >        float normFactor = 1;
457 >        if(k>=0) get_norm_pdf_factor(events, k, addcut);
458 >        sel = sel/normFactor;
459 >        nsel = nsel/normFactor;
460 >
461          Float_t tot = Neventsinfile;
462          
463 <        result=(sel-nsel)/tot;
464 <        resulterr=TMath::Sqrt(sel/tot*(1-sel/tot)/tot);
465 <        dout << "  MC efficiency: " << result << "+-" << resulterr << "  ( JZB>" << jzbSel << " : " << sel << " , JZB<-" << jzbSel << " : " << nsel << " and nevents=" << tot << ")" << std::endl;
463 >        Value result_wo_signalcont;
464 >
465 >        if(ConsiderSignalContaminationForLimits) {
466 >          result=(sel-nsel)/tot;
467 >          resulterr=(1.0/tot)*TMath::Sqrt(sel+nsel+(sel-nsel)*(sel-nsel)/tot);
468 >          result_wo_signalcont=Value(sel/tot,TMath::Sqrt(sel/tot*(1+sel/tot)/tot));
469 >        } else {//no signal contamination considered:
470 >          result=(sel)/tot;
471 >          resulterr=TMath::Sqrt(sel/tot*(1+sel/tot)/tot);
472 >          result_wo_signalcont=Value(result,resulterr);
473 >        }
474 >        if(!automatized && k>0 ) dout << "PDF assessment [" << k << "] : ";
475 >        if(!automatized) dout << "  MC efficiency: " << result << "+-" << resulterr << "  ( JZB>" << jzbSel << " : " << sel << " , signal contamination : " << nsel << " and nevents=" << tot << ") with normFact=" << normFactor << std::endl;
476 >        delete effh;
477 >        return result_wo_signalcont;
478   }
479  
480 < void JZBefficiency(TTree *events, string informalname, float &jzbeff, float &jzbefferr, bool requireZ, string addcut="") {
481 <        TCut kbase("abs(genMll-91.2)<20&&genNjets>2&&genZPt>0&&abs(mll-91.2)<20&&((id1+1)*(id2+1)*ch1*ch2)!=-2");
482 <        cout << "Getting started with JZB efficiency" << endl;
480 >
481 >
482 > //____________________________________________________________________________________
483 > // Selection efficiency for one process (MC)
484 > // not in use anymore.
485 > /*
486 > vector<float> processMCefficiency(TTree *events,int flipped, string mcjzb,bool requireZ,int Neventsinfile, string addcut) {
487 >  vector<float> process_efficiencies;
488 >  for(int iprocess=0;iprocess<=10;iprocess++) {
489 >    float this_process_efficiency,efferr;
490 >    stringstream addcutplus;
491 >    addcutplus<<addcut<<"&&(process=="<<iprocess<<")";
492 >    MCefficiency(events,this_process_efficiency, efferr,flipped,mcjzb,requireZ,Neventsinfile, addcutplus.str(),-1);
493 >    process_efficiencies.push_back(this_process_efficiency);
494 >  }
495 >  return process_efficiencies;
496 > }
497 > */      
498 >
499 > void JZBefficiency(TTree *events, string informalname, float &jzbeff, float &jzbefferr, int flipped, bool requireZ, string addcut="") {
500 >        TCut kbase(genMassCut&&"genNjets>2&&genZPt>0"&&cutmass&&cutOSSF);
501          if(addcut!="") kbase=kbase&&addcut.c_str();//this is mostly for SUSY scans (adding requirements on masses)
502 <        if(requireZ) kbase=kbase&&"TMath::Abs(genMID)==23";
503 <        TH1F* hLM4 = plotEff(events,kbase,informalname);
502 >        if(requireZ&&PlottingSetup::RestrictToMassPeak) kbase=kbase&&"TMath::Abs(genMID)==23";
503 >        TH1F* hLM4 = plotEff(events,kbase,informalname,flipped);
504          Int_t bin = hLM4->FindBin(jzbSel); // To get the error
505          jzbeff=Interpolate(jzbSel,hLM4);
506          jzbefferr=hLM4->GetBinError(bin);
# Line 263 | Line 510 | void JZBefficiency(TTree *events, string
510  
511   //________________________________________________________________________
512   // Effect of energy scale on efficiency
513 < void JZBjetScale(TTree *events, float &jesdown, float &jesup, string informalname,bool requireZ,string addcut="",float syst=0.1, Float_t jzbSelection=-1, TString plotName = "" ) {
514 <        TCut kbase("abs(genMll-91.2)<20&&genZPt>0");
513 > void JZBjetScale(TTree *events, float &jesdown, float &jesup, string informalname, int flipped, bool requireZ,string addcut="",Float_t jzbSelection=-1, TString plotName = "" ) {
514 >        TCut kbase(genMassCut&&"genZPt>0");
515          if(addcut!="") kbase=kbase&&addcut.c_str();//this is mostly for SUSY scans (adding requirements on masses)
516 <        if(requireZ) kbase=kbase&&"TMath::Abs(genMID)==23";
516 >        flag_this_change(__FUNCTION__,__LINE__,true);//PlottingSetup::RestrictToMassPeak
517 >        if(requireZ&&PlottingSetup::RestrictToMassPeak) kbase=kbase&&"TMath::Abs(genMID)==23";
518  
519 <        TCut ksel("abs(mll-91.2)<20&&((id1+1)*(id2+1)*ch1*ch2)!=-2");
519 >        TCut ksel(cutmass&&cutOSSF);
520          TCut nJets("pfJetGoodNum>2");
521          stringstream down,up;
522 <        down << "pfJetGoodNum"<<30*(1-syst)<<">=3";
523 <        up << "pfJetGoodNum"<<30*(1+syst)<<">=3";
522 >        down << "pfJetGoodNumn1sigma>=3";
523 >        up << "pfJetGoodNump1sigma>=3";
524          
525          TCut nJetsP(up.str().c_str());
526          TCut nJetsM(down.str().c_str());
# Line 280 | Line 528 | void JZBjetScale(TTree *events, float &j
528          if ( !(plotName.Length()>1) ) plotName = informalname;
529          
530          nBins = 1; jzbMin = jzbSel*0.95; jzbMax = jzbSel*1.05;
531 <        TH1F* hist = plotEff(events,(kbase&&ksel&&nJets),informalname);
532 <        
533 <        TH1F* histp = plotEff(events,(kbase&&ksel&&nJetsP),informalname);
286 <        
287 <        TH1F* histm = plotEff(events,(kbase&&ksel&&nJetsM),informalname);
531 >        TH1F* hist  = plotEff(events,(kbase&&ksel&&nJets),informalname,flipped);
532 >        TH1F* histp = plotEff(events,(kbase&&ksel&&nJetsP),informalname,flipped);
533 >        TH1F* histm = plotEff(events,(kbase&&ksel&&nJetsM),informalname,flipped);
534          
535          // Dump some information
536          Float_t eff  = Interpolate(jzbSel,hist);
# Line 294 | Line 540 | void JZBjetScale(TTree *events, float &j
540          if(!automatized) dout << "    JESup: " << effp << " (" << (effp-eff)/eff*100. << "%)" << std::endl;
541          if(!automatized) dout << "    central:  " << eff << std::endl;
542          if(!automatized) dout << "    JESdown: " << effm << " (" << (effm-eff)/eff*100. << "%)" << std::endl;
543 <        jesup=(effp-eff)/eff*100.;
544 <        jesdown=(effm-eff)/eff*100.;
543 >        jesup=(effp-eff)/eff;
544 >        jesdown=(effm-eff)/eff;
545   }
546  
547   //________________________________________________________________________
548   // Effect of energy scale on JZB efficiency
549 < void doJZBscale(TTree *events, float &down, float &up, float &syst, float systematic, string informalname, bool requireZ, string addcut) {
549 > void doJZBscale(TTree *events, float &down, float &up, float &syst, float systematic, string informalname, int flipped, bool requireZ, string addcut) {
550          
551 <        TCut kbase("abs(genMll-91.2)<20&&genZPt>0&&genNjets>2");
551 >        TCut kbase(genMassCut&&"genZPt>0&&genNjets>2");
552          if(addcut!="") kbase=kbase&&addcut.c_str();//this is mostly for SUSY scans (adding requirements on masses)
553 <        if(requireZ) kbase=kbase&&"TMath::Abs(genMID)==23";
554 <        TCut ksel("abs(mll-91.2)<20&&((id1+1)*(id2+1)*ch1*ch2)!=-2");
553 >        flag_this_change(__FUNCTION__,__LINE__,true);//PlottingSetup::RestrictToMassPeak
554 >        if(requireZ&&PlottingSetup::RestrictToMassPeak) kbase=kbase&&"TMath::Abs(genMID)==23";
555 >        TCut ksel(cutmass&&cutOSSF);
556          
557          nBins =    50;
558          jzbMin =   0.5*jzbSel;
559          jzbMax =   2.0*jzbSel;
560          
561 <        TH1F* hist = plotEff(events,kbase&&ksel,informalname);
561 >        TH1F* hist = plotEff(events,kbase&&ksel,informalname,flipped);
562          
563          // Dump some information
564          Float_t eff  = Interpolate(jzbSel,hist);
565          Float_t effp = Interpolate(jzbSel*(1.+systematic),hist);
566          Float_t effm = Interpolate(jzbSel*(1.-systematic),hist);
567 <        if(!automatized) dout << "  efficiency at JZB==" << jzbSel*(1.+systematic)  << "(-"<<syst*100<<"%) : " << effp << " (" << ((effp-eff)/eff)*100. << "%)"  << std::endl;
567 >        if(!automatized) dout << "  efficiency at JZB==" << jzbSel*(1.+systematic)  << "(-"<<systematic*100<<"%) : " << effp << " (" << ((effp-eff)/eff)*100. << "%)"  << std::endl;
568          if(!automatized) dout << "  efficiency at JZB==" << jzbSel  << ": " << eff << std::endl;
569 <        if(!automatized) dout << "  efficiency at JZB==" << jzbSel*(1.-systematic)  << "(-"<<syst*100<<"%) : " << effm << " (" << ((effm-eff)/eff)*100. << "%)"  << std::endl;
570 <        up=((effp-eff)/eff)*100;
571 <        down=((effm-eff)/eff)*100;
569 >        if(!automatized) dout << "  efficiency at JZB==" << jzbSel*(1.-systematic)  << "(-"<<systematic*100<<"%) : " << effm << " (" << ((effm-eff)/eff)*100. << "%)"  << std::endl;
570 >        up=((effp-eff)/eff);
571 >        down=((effm-eff)/eff);
572   }
573  
574   //________________________________________________________________________
575   // JZB response (true/reco. vs. true)
576 < void JZBresponse(TTree *events, bool requireZ, float &resp, float &resperr, string addcut="",bool isMET = kFALSE, Float_t myJzbMax = 200., Int_t nPeriods = 9 ) {
576 > void JZBresponse(TTree *events, string name, bool requireZ, float &resp, float &resperr, int flipped, string addcut="", bool isMET = kFALSE, Float_t myJzbMax = 200., Int_t nPeriods = 9 ) {
577          
578          jzbMin = 20;
579 <        TCut kbase("abs(genMll-91.2)<20&&genZPt>0&&genNjets>2");
579 >        flag_this_change(__FUNCTION__,__LINE__,false);//PlottingSetup::RestrictToMassPeak
580 >        TCut kbase(genMassCut&&"genZPt>0&&genNjets>2");
581          if(addcut!="") kbase=kbase&&addcut.c_str();//this is mostly for SUSY scans (adding requirements on masses)
582 <        if(requireZ) kbase=kbase&&"TMath::Abs(genMID)==23";
583 <        TCut ksel("abs(mll-91.2)<20&&((id1+1)*(id2+1)*ch1*ch2)!=-2");
582 >        flag_this_change(__FUNCTION__,__LINE__,false);//PlottingSetup::RestrictToMassPeak
583 >        if(requireZ&&PlottingSetup::RestrictToMassPeak) kbase=kbase&&"TMath::Abs(genMID)==23";
584 >        flag_this_change(__FUNCTION__,__LINE__,false);//PlottingSetup::RestrictToMassPeak
585 >        TCut ksel(cutmass&&cutOSSF);
586          
587          TProfile* hJzbResp = new TProfile("hJzbResp","JZB response  ; JZB true (GeV/c); JZB reco. / JZB true", nPeriods, jzbMin, myJzbMax, "" );
588          
589 <        if (!isMET) events->Project("hJzbResp","("+TString(mcjzbexpression)+")/genJZB:genJZB",kbase&&ksel);
589 >        string locmcjzbexpression=mcjzbexpression;
590 >        if(flipped>0) locmcjzbexpression="-"+locmcjzbexpression;
591 >        string possibleminus="";
592 >        if(flipped>0) possibleminus="-";
593 >        if (!isMET) events->Project("hJzbResp","("+TString(locmcjzbexpression)+")/("+possibleminus+"genJZB):("+possibleminus+"genJZB)",kbase&&ksel);
594          else events->Project("hJzbResp","met[4]/genMET:genMET",kbase&&ksel);
595          
596          hJzbResp->SetMaximum(1.2);
597          hJzbResp->SetMinimum(0.2);
598          hJzbResp->Fit("pol0","Q");
599          TF1 *fittedfunction = hJzbResp->GetFunction("pol0");
600 <        resp=fittedfunction->GetParameter(0);
601 <        resperr=fittedfunction->GetParError(0);
602 <        if(!automatized) dout << "  Response: " << resp << " +/- " << resperr << endl;
600 >        if(!fittedfunction) {
601 >                // in case there are not enough points passing our selection
602 >                cout << "OOPS response function invalid, assuming 100% error !!!!" << endl;
603 >                resp=1;
604 >                resperr=1;
605 >        } else {
606 >                resp=fittedfunction->GetParameter(0);
607 >                resperr=fittedfunction->GetParError(0);
608 >                if(!automatized) dout << "  Response: " << resp << " +/- " << resperr << endl;
609 >        }
610          delete hJzbResp;
611   }
612  
613  
614 < void do_systematics_for_one_file(TTree *events,int Neventsinfile,string informalname, vector<vector<float> > &results,string mcjzb,string datajzb,float peakerror,bool requireZ=false, string addcut="") {
614 > //________________________________________________________________________________________
615 > // PDF uncertainty  
616 > float get_pdf_uncertainty(TTree *events, int flipped, string mcjzb, bool requireZ, int Neventsinfile, int NPdfs, string addcut="") {
617 >  std::vector<float> efficiency;
618 >  for(int k = 1; k < NPdfs; k++) {
619 >    float result, resulterr;
620 >    Value flipval;
621 >    MCefficiency(events, result, resulterr, flipped, mcjzb, requireZ, Neventsinfile, addcut, k);
622 >    efficiency.push_back(result);
623 >  }
624 >  float errHi, errLow,err;
625 >  master_formula(efficiency, errHi, errLow);
626 >  err=errLow;
627 >  if(errHi>errLow) err=errHi;
628 >  if(!automatized) dout << "  Uncertainty from PDF: " << errLow << " (low) and " << errHi << "(high) ---> Picked " << err << endl;
629 >  return err;
630 >
631 > }
632 >
633 > int get_npdfs(TTree *events) {
634 >  int NPDFs;
635 >  events->SetBranchAddress("NPdfs",&NPDFs);
636 >  events->GetEntry(1);
637 >  return NPDFs;
638 > }
639    
640 <  float JetEnergyScaleUncert=0.1;
641 <  float JZBScaleUncert=0.1;
640 >
641 > void do_systematics_for_one_file(TTree *events,int Neventsinfile,string informalname, vector<vector<float> > &results,int flipped, string mcjzb,string datajzb,float peakerror,bool requireZ=false, string addcut="", bool ismSUGRA=false) {
642 >  float JZBScaleUncert=0.05;
643    mcjzbexpression=mcjzb;
644 <  float triggereff=4;//percent!
644 >  float triggereff=2.0/100;// in range [0,1]
645    dout << "Trigger efficiency not implemented in this script  yet, still using external one" << endl;
646 <  float leptonseleff=2;//percent!
646 >  float leptonseleff=2.0/100;// in range [0,1]
647 >  leptonseleff=TMath::Sqrt(leptonseleff*leptonseleff+leptonseleff*leptonseleff); // because the 2% is per lepton
648    dout << "Lepton selection efficiency not implemented in this script  yet, still using external one" << endl;
649    
650 +  int NPdfs=0;
651 +  if(ismSUGRA) NPdfs = get_npdfs(events);
652 +  
653    float mceff,mcefferr,jzbeff,jzbefferr;
654    if(!automatized) dout << "MC efficiencies:" << endl;
655 <  MCefficiency(events,mceff,mcefferr,mcjzb,requireZ,Neventsinfile,addcut);
656 <  JZBefficiency(events,informalname,jzbeff,jzbefferr,requireZ,addcut);
655 >  Value flipefficiency;
656 >  Value mceff_nosigcont = MCefficiency(events,mceff,mcefferr,flipped,mcjzb,requireZ,Neventsinfile,addcut,-1);
657 >  if(!automatized) cout << "   Without signal contamination, we find an efficiency of " << mceff_nosigcont << endl;
658 >
659 >  if(PlottingSetup::computeJZBefficiency) JZBefficiency(events,informalname,jzbeff,jzbefferr,flipped,requireZ,addcut);
660    if(!automatized) dout << "JZB efficiency: " << jzbeff << "+/-" << jzbefferr << endl;
661    
662 <  if(!automatized) dout << "Error from Peak position:" << endl;
662 >  if(!automatized) dout << "Error from Peak position:";
663    float sysfrompeak=0;
664 <  PeakError(events,sysfrompeak,mcjzb,peakerror,addcut);
664 >  PeakError(events,sysfrompeak,mcjzb,peakerror,flipped,addcut);
665      
666 <  if(!automatized) dout << "Jet energy scale: " << std::endl;
666 >  if(!automatized) dout << "Jet energy scale (JES): " << std::endl;
667    float jesup,jesdown;
668 <  JZBjetScale(events,jesdown,jesup,informalname,requireZ,addcut,JetEnergyScaleUncert);
669 <  
668 >  JZBjetScale(events,jesdown,jesup,informalname,flipped,requireZ,addcut);
669 >
670    if(!automatized) dout << "JZB scale: " << std::endl;
671    float scaleup,scaledown,scalesyst;
672 <  doJZBscale(events,scaledown,scaleup,scalesyst,JZBScaleUncert,informalname,requireZ,addcut);
672 >  doJZBscale(events,scaledown,scaleup,scalesyst,JZBScaleUncert,informalname,flipped,requireZ,addcut);
673    
674    if(!automatized) dout << "JZB response: " << std::endl;
675    float resp,resperr;
676 <  JZBresponse(events,requireZ,resp,resperr,addcut);
676 >  if(PlottingSetup::computeJZBresponse) {
677 >        if(!automatized) dout << "JZB response: " << std::endl;
678 >        if(!ismSUGRA) JZBresponse(events,informalname,requireZ,resp,resperr,flipped,addcut);
679 >  }
680  
681    if(!automatized) dout << "Pileup: " << std::endl;
682 <  float resolution=pileup(events,requireZ,informalname,addcut);
683 <  
682 > //  float resolution;
683 >  //resolution=pileup(events,requireZ,informalname,flipped,addcut);
684 >
685 >  float PDFuncert=0;
686 >  if(!automatized) dout << "Assessing PDF uncertainty: " << std::endl;
687 >  if(ismSUGRA) PDFuncert = get_pdf_uncertainty(events, flipped, mcjzb, requireZ, Neventsinfile, NPdfs, addcut);
688 >
689    dout << "_______________________________________________" << endl;
690    dout << "                 SUMMARY FOR " << informalname << " with JZB>" << jzbSel << "  (all in %) ";
691    if(addcut!="") dout << "With additional cut: " << addcut;
692    dout << endl;
693 <  dout << "MC efficiency: " << 100*mceff << "+/-" << 100*mcefferr << endl;
694 <  dout << "Trigger efficiency: " << triggereff << endl;
695 <  dout << "Lepton Sel Eff: " << leptonseleff << endl;
696 <  dout << "Jet energy scale: " << jesup << " " << jesdown << endl;
697 <  dout << "JZB Scale Uncert: " << scaledown << " " << scaleup << endl;
698 <  dout << "Resolution : " << resolution << endl;
699 <  dout << "From peak : " << sysfrompeak << endl;
700 <  dout << "JZB efficiency: " << jzbeff << "+/-" << jzbefferr << " (not yet included below) " << endl;
701 <  dout << "JZB response  : " << resp << " +/-" << resperr << " (not yet included below) " << endl;
693 >  dout << "MC efficiency: " << mceff << "+/-" << mcefferr << endl; // in range [0,1]
694 >  dout << "Trigger efficiency: " << triggereff << endl; // in range [0,1]
695 >  dout << "Lepton Sel Eff: " << leptonseleff << endl; // in range [0,1]
696 >  dout << "Jet energy scale: " << jesup << " " << jesdown << endl; // in range [0,1]
697 >  dout << "JZB Scale Uncert: " << scaledown << " " << scaleup << endl; // in range [0,1]
698 > //  dout << "Resolution : " << resolution << endl; // in range [0,1]
699 >  dout << "From peak : " << sysfrompeak << endl; // in range [0,1]
700 >  if(ismSUGRA) dout << "PDF uncertainty  : " << PDFuncert << endl; // in range [0,1]
701 >  if(PlottingSetup::computeJZBefficiency) dout << "JZB efficiency: " << jzbeff << "+/-" << jzbefferr << " (not yet included below) " << endl; // in range [0,1]
702 >  if(PlottingSetup::computeJZBresponse)dout << "JZB response  : " << resp << " +/-" << resperr << " (not yet included below) " << endl; // in range [0,1]
703    
704    float toterr=0;
705 <  toterr+=(triggereff/100)*(triggereff/100);
706 <  toterr+=(leptonseleff/100)*(leptonseleff/100);
707 <  if(fabs(jesup)>fabs(jesdown)) toterr+=(jesup/100)*(jesup/100); else toterr+=(jesdown/100)*(jesdown/100);
708 <  if(fabs(scaleup)>fabs(scaledown)) toterr+=(scaleup/100)*(scaleup/100); else toterr+=(scaledown/100)*(scaledown/100);
709 <  toterr+=(resolution/100)*(resolution/100);
710 <  toterr+=(sysfrompeak/100)*(sysfrompeak/100);
711 <  toterr=TMath::Sqrt(toterr);
712 <  dout << "FINAL RESULT : " << 100*mceff << " +/- "<< 100*mcefferr << " (stat) +/- " << 100*toterr << " (syst)   %" << endl;
713 <  dout << "     we thus use the sqrt of the sum of the squares which is : " << 100*TMath::Sqrt(mcefferr*mcefferr+(toterr*toterr)) << endl;
705 >  toterr+=(triggereff)*(triggereff);
706 >  toterr+=(leptonseleff)*(leptonseleff);
707 >  if(fabs(jesup)>fabs(jesdown)) toterr+=(jesup*jesup); else toterr+=(jesdown*jesdown);
708 >  if(fabs(scaleup)>fabs(scaledown)) toterr+=(scaleup*scaleup); else toterr+=(scaledown*scaledown);
709 > //  toterr+=(resolution*resolution);
710 >  toterr+=(sysfrompeak*sysfrompeak);
711 >  if(ismSUGRA) toterr+=(PDFuncert*PDFuncert);
712 >  dout << "TOTAL SYSTEMATICS: " << TMath::Sqrt(toterr) << " --> " << TMath::Sqrt(toterr)*mceff << endl;
713 >  float systerr=TMath::Sqrt(toterr)*mceff;
714 >  toterr=TMath::Sqrt(toterr*mceff*mceff+mcefferr*mcefferr);//also includes stat err!
715 >  
716 >  dout << "FINAL RESULT : " << 100*mceff << " +/- "<< 100*mcefferr << " (stat) +/- " << 100*systerr << " (syst)   %" << endl;
717 >  dout << "     we thus use the sqrt of the sum of the squares of the stat & syst err, which is : " << 100*toterr << endl;
718 >  dout << "_______________________________________________" << endl;
719 >  
720 >  //Do not modify the lines below or mess with the order; this order is expected by all limit calculating functions!
721    vector<float> res;
722    res.push_back(jzbSel);
723    res.push_back(mceff);
724    res.push_back(mcefferr);
725    res.push_back(toterr);
726    res.push_back(TMath::Sqrt((mcefferr)*(mcefferr)+(toterr*toterr)));
727 <  if(fabs(jesup)>fabs(jesdown)) res.push_back(fabs(jesup/100)); else res.push_back(fabs(jesdown)/100);
728 <  if(fabs(scaleup)>fabs(scaledown)) res.push_back(fabs(scaleup)/100); else res.push_back(fabs(scaledown)/100);
729 <  res.push_back(fabs(resolution)/100);
727 >  if(fabs(jesup)>fabs(jesdown)) res.push_back(fabs(jesup)); else res.push_back(fabs(jesdown));
728 >  if(fabs(scaleup)>fabs(scaledown)) res.push_back(fabs(scaleup)); else res.push_back(fabs(scaledown));
729 > //  res.push_back(fabs(resolution));
730 >  res.push_back(0.0);
731 >  res.push_back(mceff_nosigcont.getValue());
732 >  res.push_back(mceff_nosigcont.getError());
733 >  if(ismSUGRA) res.push_back(PDFuncert);
734    results.push_back(res);
735   }
736  
737 < vector<vector<float> > compute_systematics(string mcjzb, float mcpeakerror, string datajzb, samplecollection &signalsamples, vector<float> bins, bool requireZ=false) {
737 > vector<vector<float> > compute_systematics(string mcjzb, float mcpeakerror, int flipped, string datajzb, samplecollection &signalsamples, vector<float> bins, bool requireZ=false) {
738    automatized=true;
739    vector< vector<float> > systematics;
740    for (int isignal=0; isignal<signalsamples.collection.size();isignal++) {
741 <      dout << "Looking at signal " << (signalsamples.collection)[isignal].filename << endl;
742 <      for(int ibin=0;ibin<bins.size();ibin++) {
743 <        jzbSel=bins[ibin];
744 <        geqleq="geq";
745 <        do_systematics_for_one_file((signalsamples.collection)[isignal].events,(signalsamples.collection)[isignal].Nentries,(signalsamples.collection)[isignal].samplename,systematics,mcjzb,datajzb,mcpeakerror,requireZ);
746 <      }//end of bin loop
741 >    dout << "Looking at signal " << (signalsamples.collection)[isignal].filename << endl;
742 >    for(int ibin=0;ibin<bins.size();ibin++) {
743 >      jzbSel=bins[ibin];
744 >      geqleq="geq";
745 >      do_systematics_for_one_file((signalsamples.collection)[isignal].events,(signalsamples.collection)[isignal].Nentries,(signalsamples.collection)[isignal].samplename,systematics,flipped,mcjzb,datajzb,mcpeakerror,requireZ);
746 >    }//end of bin loop
747    }//end of signal loop
748    return systematics;
749   }

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