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kiesel |
1.1 |
#!/bin/bash
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# This script submitts all jobs to naf, which are defined in dataset
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kiesel |
1.2 |
datasets=(
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# srm://dcache-se-cms.desy.de:8443/srm/managerv2?SFN=/pnfs/desy.de/cms/tier2/store/user/jschulz/nTuples/QCD_250-500_V01/
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# srm://dcache-se-cms.desy.de:8443/srm/managerv2?SFN=/pnfs/desy.de/cms/tier2/store/user/jschulz/nTuples/QCD_500-1000_V01/
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# srm://dcache-se-cms.desy.de:8443/srm/managerv2?SFN=/pnfs/desy.de/cms/tier2/store/user/jschulz/nTuples/QCD_1000-inf_V01/
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kiesel |
1.6 |
# srm://dcache-se-cms.desy.de:8443/srm/managerv2?SFN=/pnfs/desy.de/cms/tier2/store/user/jschulz/nTuples/GJets_V01/
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kiesel |
1.1 |
srm://dcache-se-cms.desy.de:8443/srm/managerv2?SFN=/pnfs/desy.de/cms/tier2/store/user/jschulz/nTuples/WJets_V01/
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kiesel |
1.5 |
srm://dcache-se-cms.desy.de:8443/srm/managerv2?SFN=/pnfs/desy.de/cms/tier2/store/user/jschulz/nTuples/TTJets_V01/
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kiesel |
1.2 |
# srm://dcache-se-cms.desy.de:8443/srm/managerv2?SFN=/pnfs/desy.de/cms/tier2/store/user/jschulz/nTuples/GVJets_V01/
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)
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kiesel |
1.1 |
# settings
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kiesel |
1.6 |
version="12"
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outputFolder=/scratch/hh/dust/naf/cms/user/kiesel
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kiesel |
1.1 |
files_per_job=20
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kiesel |
1.6 |
fetchScript=getOutput_${version}.sh
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echo "#!/bin/bash -e" > $fetchScript
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chmod +x $fetchScript
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kiesel |
1.1 |
for dataset in "${datasets[@]}"; do
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# get folder name as best description for job
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job_name=$(echo $dataset|rev|cut -d'/' -f2|rev)
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# Since root can't handle -, it will be substituted to _
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job_name=$(echo $job_name|sed 's/-/_/g')
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kiesel |
1.2 |
files=( $(srmls -offset 0 -count 999 $dataset|grep root|awk '{print $2 }') )
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# Ugly hack to get more than 1000 files (up to 2000).
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files+=( $(srmls -offset 1000 -count 1999 $dataset|grep root|awk '{print $2 }') )
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kiesel |
1.1 |
number_of_jobs=$(expr ${#files[@]} / $files_per_job + 1 )
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# just for testing purpurse
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#TMPDIR=/tmp
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for (( job=1; job<=$number_of_jobs; job++ )); do
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jobPrefix=${job_name}.${version}__${job}
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files_to_submit=""
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for (( i=$(expr $job \* $files_per_job - $files_per_job ); i<$(expr $job \* $files_per_job ); i++ )); do
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if [[ "${files[$i]}" != "" ]]; then
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files_to_submit=$files_to_submit"dcap://dcache-cms-dcap.desy.de"${files[$i]}" "
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fi
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done # files for one job
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kiesel |
1.6 |
outputFileName=$outputFolder/${jobPrefix}_tree.root
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kiesel |
1.1 |
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# now that we have all information, get data
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script=$jobPrefix.sh
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echo export SCRAM_ARCH="slc5_amd64_gcc462" > $script
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echo export VO_CMS_SW_DIR=/cvmfs/cms.cern.ch >> $script
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echo source $VO_CMS_SW_DIR/cmsset_default.sh >> $script
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echo cd $HOME/CMSSW_5_3_8/src >> $script
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echo cmsenv >> $script
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echo cd $HOME/treeWriter >> $script
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kiesel |
1.6 |
echo make >> $script
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kiesel |
1.1 |
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echo ./executable $outputFileName $files_to_submit >> $script
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chmod +x $script
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kiesel |
1.6 |
qsub -b y -j y -l h_cpu=7:00:00 -l site=hh `pwd`/$jobPrefix.sh
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# i: merge stdout and stderr
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# o: log file
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kiesel |
1.1 |
done # all jobs
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kiesel |
1.6 |
echo "rm ${job_name}.${version}__*.sh" >> $fetchScript
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echo "rm ~/${job_name}.${version}__*.sh.o*" >> $fetchScript
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echo "hadd $outputFolder/${job_name}.${version}_tree.root $outputFolder/${job_name}.${version}__*.root" >> $fetchScript
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echo "rm $outputFolder/${job_name}.${version}__*.root" >> $fetchScript
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kiesel |
1.1 |
done #dataset
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