| 1 |
kiesel |
1.1 |
#!/bin/bash
|
| 2 |
|
|
# This script submitts all jobs to naf, which are defined in dataset
|
| 3 |
|
|
|
| 4 |
kiesel |
1.2 |
datasets=(
|
| 5 |
|
|
# srm://dcache-se-cms.desy.de:8443/srm/managerv2?SFN=/pnfs/desy.de/cms/tier2/store/user/jschulz/nTuples/QCD_250-500_V01/
|
| 6 |
|
|
# srm://dcache-se-cms.desy.de:8443/srm/managerv2?SFN=/pnfs/desy.de/cms/tier2/store/user/jschulz/nTuples/QCD_500-1000_V01/
|
| 7 |
|
|
# srm://dcache-se-cms.desy.de:8443/srm/managerv2?SFN=/pnfs/desy.de/cms/tier2/store/user/jschulz/nTuples/QCD_1000-inf_V01/
|
| 8 |
kiesel |
1.6 |
# srm://dcache-se-cms.desy.de:8443/srm/managerv2?SFN=/pnfs/desy.de/cms/tier2/store/user/jschulz/nTuples/GJets_V01/
|
| 9 |
kiesel |
1.7 |
# srm://dcache-se-cms.desy.de:8443/srm/managerv2?SFN=/pnfs/desy.de/cms/tier2/store/user/jschulz/nTuples/WJets_V01/
|
| 10 |
|
|
# srm://dcache-se-cms.desy.de:8443/srm/managerv2?SFN=/pnfs/desy.de/cms/tier2/store/user/jschulz/nTuples/TTJets_V01/
|
| 11 |
|
|
srm://dcache-se-cms.desy.de:8443/srm/managerv2?SFN=/pnfs/desy.de/cms/tier2/store/user/jschulz/nTuples/DY_to_ee/
|
| 12 |
kiesel |
1.2 |
# srm://dcache-se-cms.desy.de:8443/srm/managerv2?SFN=/pnfs/desy.de/cms/tier2/store/user/jschulz/nTuples/GVJets_V01/
|
| 13 |
|
|
)
|
| 14 |
kiesel |
1.1 |
# settings
|
| 15 |
kiesel |
1.7 |
version="14"
|
| 16 |
kiesel |
1.6 |
outputFolder=/scratch/hh/dust/naf/cms/user/kiesel
|
| 17 |
kiesel |
1.1 |
files_per_job=20
|
| 18 |
|
|
|
| 19 |
kiesel |
1.6 |
fetchScript=getOutput_${version}.sh
|
| 20 |
|
|
echo "#!/bin/bash -e" > $fetchScript
|
| 21 |
|
|
chmod +x $fetchScript
|
| 22 |
|
|
|
| 23 |
kiesel |
1.1 |
for dataset in "${datasets[@]}"; do
|
| 24 |
|
|
|
| 25 |
|
|
# get folder name as best description for job
|
| 26 |
|
|
job_name=$(echo $dataset|rev|cut -d'/' -f2|rev)
|
| 27 |
|
|
# Since root can't handle -, it will be substituted to _
|
| 28 |
|
|
job_name=$(echo $job_name|sed 's/-/_/g')
|
| 29 |
|
|
|
| 30 |
kiesel |
1.2 |
files=( $(srmls -offset 0 -count 999 $dataset|grep root|awk '{print $2 }') )
|
| 31 |
|
|
# Ugly hack to get more than 1000 files (up to 2000).
|
| 32 |
|
|
files+=( $(srmls -offset 1000 -count 1999 $dataset|grep root|awk '{print $2 }') )
|
| 33 |
kiesel |
1.1 |
number_of_jobs=$(expr ${#files[@]} / $files_per_job + 1 )
|
| 34 |
|
|
|
| 35 |
|
|
# just for testing purpurse
|
| 36 |
|
|
#TMPDIR=/tmp
|
| 37 |
|
|
|
| 38 |
|
|
|
| 39 |
|
|
for (( job=1; job<=$number_of_jobs; job++ )); do
|
| 40 |
|
|
|
| 41 |
|
|
jobPrefix=${job_name}.${version}__${job}
|
| 42 |
|
|
|
| 43 |
|
|
files_to_submit=""
|
| 44 |
|
|
for (( i=$(expr $job \* $files_per_job - $files_per_job ); i<$(expr $job \* $files_per_job ); i++ )); do
|
| 45 |
|
|
if [[ "${files[$i]}" != "" ]]; then
|
| 46 |
|
|
files_to_submit=$files_to_submit"dcap://dcache-cms-dcap.desy.de"${files[$i]}" "
|
| 47 |
|
|
fi
|
| 48 |
|
|
done # files for one job
|
| 49 |
kiesel |
1.6 |
outputFileName=$outputFolder/${jobPrefix}_tree.root
|
| 50 |
kiesel |
1.1 |
|
| 51 |
|
|
# now that we have all information, get data
|
| 52 |
|
|
script=$jobPrefix.sh
|
| 53 |
|
|
|
| 54 |
|
|
echo export SCRAM_ARCH="slc5_amd64_gcc462" > $script
|
| 55 |
|
|
echo export VO_CMS_SW_DIR=/cvmfs/cms.cern.ch >> $script
|
| 56 |
|
|
echo source $VO_CMS_SW_DIR/cmsset_default.sh >> $script
|
| 57 |
|
|
echo cd $HOME/CMSSW_5_3_8/src >> $script
|
| 58 |
|
|
echo cmsenv >> $script
|
| 59 |
|
|
echo cd $HOME/treeWriter >> $script
|
| 60 |
kiesel |
1.6 |
echo make >> $script
|
| 61 |
kiesel |
1.1 |
|
| 62 |
|
|
echo ./executable $outputFileName $files_to_submit >> $script
|
| 63 |
|
|
chmod +x $script
|
| 64 |
kiesel |
1.6 |
qsub -b y -j y -l h_cpu=7:00:00 -l site=hh `pwd`/$jobPrefix.sh
|
| 65 |
|
|
# i: merge stdout and stderr
|
| 66 |
|
|
# o: log file
|
| 67 |
kiesel |
1.1 |
done # all jobs
|
| 68 |
kiesel |
1.6 |
echo "rm ${job_name}.${version}__*.sh" >> $fetchScript
|
| 69 |
|
|
echo "rm ~/${job_name}.${version}__*.sh.o*" >> $fetchScript
|
| 70 |
|
|
echo "hadd $outputFolder/${job_name}.${version}_tree.root $outputFolder/${job_name}.${version}__*.root" >> $fetchScript
|
| 71 |
|
|
echo "rm $outputFolder/${job_name}.${version}__*.root" >> $fetchScript
|
| 72 |
kiesel |
1.1 |
done #dataset
|
