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yangyong |
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#include <cstdlib>
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#include <iostream>
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#include <map>
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#include <string>
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#include "TChain.h"
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#include "TFile.h"
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#include "TTree.h"
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#include "TString.h"
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#include "TObjString.h"
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#include "TSystem.h"
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#include "TROOT.h"
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#include "TMVARegGui.C"
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#if not defined(__CINT__) || defined(__MAKECINT__)
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#include "TMVA/Tools.h"
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#include "TMVA/Factory.h"
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#endif
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using namespace TMVA;
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int trainecal;
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int trainCut;
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TCut mycut;
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TChain *fChain;
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vector< pair<TString,TString> > vec_trainVar;
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#include "traincut.cc"
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#include "trainvar.cc"
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void trainReg(int test_trainecal, TString myMethodList = "BDTG" )
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{
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trainecal = test_trainecal;
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// The explicit loading of the shared libTMVA is done in TMVAlogon.C, defined in .rootrc
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// if you use your private .rootrc, or run from a different directory, please copy the
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// corresponding lines from .rootrc
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// methods to be processed can be given as an argument; use format:
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//
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// mylinux~> root -l TMVARegression.C\(\"myMethod1,myMethod2,myMethod3\"\)
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//
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//---------------------------------------------------------------
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// This loads the library
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TMVA::Tools::Instance();
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// Default MVA methods to be trained + tested
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std::map<std::string,int> Use;
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// --- Mutidimensional likelihood and Nearest-Neighbour methods
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Use["PDERS"] = 0;
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//Use["PDEFoam"] = 1;
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Use["PDEFoam"] = 0;
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Use["KNN"] = 0;
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//
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// --- Linear Discriminant Analysis
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Use["LD"] = 0;
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//
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// --- Function Discriminant analysis
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Use["FDA_GA"] = 1;
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Use["FDA_MC"] = 0;
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Use["FDA_MT"] = 0;
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Use["FDA_GAMT"] = 0;
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//
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// --- Neural Network
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Use["MLP"] = 1;
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//
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// --- Support Vector Machine
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Use["SVM"] = 0;
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//
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// --- Boosted Decision Trees
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Use["BDT"] = 0;
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Use["BDTG"] = 1;
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// ---------------------------------------------------------------
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std::cout << std::endl;
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std::cout << "==> Start TMVARegression" << std::endl;
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// Select methods (don't look at this code - not of interest)
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if (myMethodList != "") {
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for (std::map<std::string,int>::iterator it = Use.begin(); it != Use.end(); it++) it->second = 0;
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std::vector<TString> mlist = gTools().SplitString( myMethodList, ',' );
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for (UInt_t i=0; i<mlist.size(); i++) {
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std::string regMethod(mlist[i]);
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if (Use.find(regMethod) == Use.end()) {
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std::cout << "Method \"" << regMethod << "\" not known in TMVA under this name. Choose among the following:" << std::endl;
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for (std::map<std::string,int>::iterator it = Use.begin(); it != Use.end(); it++) std::cout << it->first << " ";
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std::cout << std::endl;
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return;
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}
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Use[regMethod] = 1;
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}
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}
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// --------------------------------------------------------------------------------------------------
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// --- Here the preparation phase begins
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// Create a new root output file
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TString outfileName( "TMVARegOutput.root" );
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TFile* outputFile = TFile::Open( outfileName, "RECREATE" );
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// Create the factory object. Later you can choose the methods
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// whose performance you'd like to investigate. The factory will
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// then run the performance analysis for you.
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//
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// The first argument is the base of the name of all the
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// weightfiles in the directory weight/
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//
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// The second argument is the output file for the training results
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// All TMVA output can be suppressed by removing the "!" (not) in
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// front of the "Silent" argument in the option string
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TMVA::Factory *factory = new TMVA::Factory( "TMVARegression", outputFile,
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"!V:!Silent:Color:!DrawProgressBar" );
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// If you wish to modify default settings
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// (please check "src/Config.h" to see all available global options)
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// (TMVA::gConfig().GetVariablePlotting()).fTimesRMS = 8.0;
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// (TMVA::gConfig().GetIONames()).fWeightFileDir = "myWeightDirectory";
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// Define the input variables that shall be used for the MVA training
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// note that you may also use variable expressions, such as: "3*var1/var2*abs(var3)"
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// [all types of expressions that can also be parsed by TTree::Draw( "expression" )]
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//factory->AddVariable( "var1", "Variable 1", "units", 'F' );
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//factory->AddVariable( "var2", "Variable 2", "units", 'F' );
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fChain = new TChain("Analysis");
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fChain->Add("/mnt/hadoop/user/yangyong//data/photonTree/gjs6.root");
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// Apply additional cuts on the signal and background samples (can be different)
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///TCut mycut = ""; // for example: TCut mycut = "abs(var1)<0.5 && abs(var2-0.5)<1";
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setTrainingCut();
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setTrainingVar();
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for(int j=0; j<int(vec_trainVar.size());j++){
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TString var = vec_trainVar[j].first;
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TString type = vec_trainVar[j].second;
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if( type == "F"){
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factory->AddVariable(var,'F');
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}else if( type == "I"){
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factory->AddVariable(var,'I');
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}else{
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cout<<"unknow type " << type <<endl;
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return;
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}
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}
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cout<<"factory var added " <<endl;
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// You can add so-called "Spectator variables", which are not used in the MVA training,
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// but will appear in the final "TestTree" produced by TMVA. This TestTree will contain the
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// input variables, the response values of all trained MVAs, and the spectator variables
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///factory->AddSpectator( "spec1:= var1* var1 + var1 * var2 + 3 * var1 + 2 * var2 + var2* var2", "Spectator 1", "units", 'F' );
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//factory->AddSpectator( "spec2:=var1*3", "Spectator 2", "units", 'F' );
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// Add the variable carrying the regression target
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//factory->AddTarget( "etrue/escraw");
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//barrel
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if(trainecal ==1){
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factory->AddTarget( "etrue/escraw");
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}
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//endcap
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else if(trainecal==2){
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factory->AddTarget( "etrue/(escraw+eps)");
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}
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// It is also possible to declare additional targets for multi-dimensional regression, ie:
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// -- factory->AddTarget( "fvalue2" );
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// BUT: this is currently ONLY implemented for MLP
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// Read training and test data (see TMVAClassification for reading ASCII files)
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// load the signal and background event samples from ROOT trees
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// global event weights per tree (see below for setting event-wise weights)
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Double_t regWeight = 1.0;
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// You can add an arbitrary number of regression trees
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factory->AddRegressionTree( fChain, regWeight );
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// This would set individual event weights (the variables defined in the
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// expression need to exist in the original TTree)
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// tell the factory to use all remaining events in the trees after training for testing:
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int nselected = fChain->GetEntries(mycut);
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cout<<" nselected " << nselected <<endl;
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int ntrain;
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int ntest;
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//barrel
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if(trainecal ==1){
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ntrain = 1500000;
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}
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//endcap
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else if(trainecal==2){
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ntrain = 1000000;
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}
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if( nselected <ntrain){
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cout<<"ntrain > nselected " << nselected <<" "<< ntrain <<endl;
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return;
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}
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ntest = nselected-ntrain;
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if( ntest > ntrain){
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ntest = ntrain;
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}
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TString training = "nTrain_Regression="+TString(Form("%d",ntrain)) + ":nTest_Regression=" +TString(Form("%d",ntest)) + ":SplitMode=Random:NormMode=NumEvents:!V" ;
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factory->PrepareTrainingAndTestTree( mycut, training);
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// If no numbers of events are given, half of the events in the tree are used
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// for training, and the other half for testing:
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// factory->PrepareTrainingAndTestTree( mycut, "SplitMode=random:!V" );
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// ---- Book MVA methods
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//
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// please lookup the various method configuration options in the corresponding cxx files, eg:
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// src/MethoCuts.cxx, etc, or here: http://tmva.sourceforge.net/optionRef.html
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// it is possible to preset ranges in the option string in which the cut optimisation should be done:
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// "...:CutRangeMin[2]=-1:CutRangeMax[2]=1"...", where [2] is the third input variable
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// PDE - RS method
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if (Use["PDERS"])
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factory->BookMethod( TMVA::Types::kPDERS, "PDERS",
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"!H:!V:NormTree=T:VolumeRangeMode=Adaptive:KernelEstimator=Gauss:GaussSigma=0.3:NEventsMin=40:NEventsMax=60:VarTransform=None" );
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// And the options strings for the MinMax and RMS methods, respectively:
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// "!H:!V:VolumeRangeMode=MinMax:DeltaFrac=0.2:KernelEstimator=Gauss:GaussSigma=0.3" );
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// "!H:!V:VolumeRangeMode=RMS:DeltaFrac=3:KernelEstimator=Gauss:GaussSigma=0.3" );
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if (Use["PDEFoam"])
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factory->BookMethod( TMVA::Types::kPDEFoam, "PDEFoam",
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"!H:!V:MultiTargetRegression=F:TargetSelection=Mpv:TailCut=0.001:VolFrac=0.0333:nActiveCells=500:nSampl=2000:nBin=5:Compress=T:Kernel=None:Nmin=10:VarTransform=None" );
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// K-Nearest Neighbour classifier (KNN)
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if (Use["KNN"])
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factory->BookMethod( TMVA::Types::kKNN, "KNN",
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"nkNN=20:ScaleFrac=0.8:SigmaFact=1.0:Kernel=Gaus:UseKernel=F:UseWeight=T:!Trim" );
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// Linear discriminant
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if (Use["LD"])
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factory->BookMethod( TMVA::Types::kLD, "LD",
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"!H:!V:VarTransform=None" );
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// Function discrimination analysis (FDA) -- test of various fitters - the recommended one is Minuit (or GA or SA)
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if (Use["FDA_MC"])
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factory->BookMethod( TMVA::Types::kFDA, "FDA_MC",
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"!H:!V:Formula=(0)+(1)*x0+(2)*x1:ParRanges=(-100,100);(-100,100);(-100,100):FitMethod=MC:SampleSize=100000:Sigma=0.1:VarTransform=D" );
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if (Use["FDA_GA"]) // can also use Simulated Annealing (SA) algorithm (see Cuts_SA options) .. the formula of this example is good for parabolas
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factory->BookMethod( TMVA::Types::kFDA, "FDA_GA",
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"!H:!V:Formula=(0)+(1)*x0+(2)*x1:ParRanges=(-100,100);(-100,100);(-100,100):FitMethod=GA:PopSize=100:Cycles=3:Steps=30:Trim=True:SaveBestGen=1:VarTransform=Norm" );
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if (Use["FDA_MT"])
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factory->BookMethod( TMVA::Types::kFDA, "FDA_MT",
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"!H:!V:Formula=(0)+(1)*x0+(2)*x1:ParRanges=(-100,100);(-100,100);(-100,100);(-10,10):FitMethod=MINUIT:ErrorLevel=1:PrintLevel=-1:FitStrategy=2:UseImprove:UseMinos:SetBatch" );
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if (Use["FDA_GAMT"])
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factory->BookMethod( TMVA::Types::kFDA, "FDA_GAMT",
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"!H:!V:Formula=(0)+(1)*x0+(2)*x1:ParRanges=(-100,100);(-100,100);(-100,100):FitMethod=GA:Converger=MINUIT:ErrorLevel=1:PrintLevel=-1:FitStrategy=0:!UseImprove:!UseMinos:SetBatch:Cycles=1:PopSize=5:Steps=5:Trim" );
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// Neural network (MLP)
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if (Use["MLP"])
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factory->BookMethod( TMVA::Types::kMLP, "MLP", "!H:!V:VarTransform=Norm:NeuronType=tanh:NCycles=20000:HiddenLayers=N+20:TestRate=6:TrainingMethod=BFGS:Sampling=0.3:SamplingEpoch=0.8:ConvergenceImprove=1e-6:ConvergenceTests=15:!UseRegulator" );
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// Support Vector Machine
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if (Use["SVM"])
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factory->BookMethod( TMVA::Types::kSVM, "SVM", "Gamma=0.25:Tol=0.001:VarTransform=Norm" );
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// Boosted Decision Trees
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if (Use["BDT"])
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factory->BookMethod( TMVA::Types::kBDT, "BDT",
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"!H:!V:NTrees=100:nEventsMin=5:BoostType=AdaBoostR2:SeparationType=RegressionVariance:nCuts=20:PruneMethod=CostComplexity:PruneStrength=30" );
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if (Use["BDTG"]){
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factory->BookMethod( TMVA::Types::kBDT, "BDTG","!H:!V:nEventsMin=200:NTrees=100::BoostType=Grad:Shrinkage=0.1:UseYesNoLeaf=F:nCuts=2000:MaxDepth=100:NNodesMax=100000" );
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}
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// --------------------------------------------------------------------------------------------------
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// ---- Now you can tell the factory to train, test, and evaluate the MVAs
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// Train MVAs using the set of training events
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factory->TrainAllMethods();
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| 314 |
|
|
|
| 315 |
|
|
// ---- Evaluate all MVAs using the set of test events
|
| 316 |
|
|
|
| 317 |
|
|
// factory->TestAllMethods();
|
| 318 |
|
|
|
| 319 |
|
|
// ----- Evaluate and compare performance of all configured MVAs
|
| 320 |
|
|
|
| 321 |
|
|
// factory->EvaluateAllMethods();
|
| 322 |
|
|
|
| 323 |
|
|
// --------------------------------------------------------------
|
| 324 |
|
|
|
| 325 |
|
|
// Save the output
|
| 326 |
|
|
outputFile->Close();
|
| 327 |
|
|
|
| 328 |
|
|
std::cout << "==> Wrote root file: " << outputFile->GetName() << std::endl;
|
| 329 |
|
|
std::cout << "==> TMVARegression is done!" << std::endl;
|
| 330 |
|
|
|
| 331 |
|
|
delete factory;
|
| 332 |
|
|
|
| 333 |
|
|
// Launch the GUI for the root macros
|
| 334 |
|
|
//if (!gROOT->IsBatch()) TMVARegGui( outfileName );
|
| 335 |
|
|
}
|
