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buchmann |
1.1 |
#!/bin/bash
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function usage {
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echo "You can use this script to send crab jobs for scans. You can either run it directly and answer the two questions, or you can answer them directly using -n NAME -j NJOBS"
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exit 1
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}
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function clean_file {
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echo "Cleaning: $1"
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if [ -e $1 ]; then
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rm $1
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fi
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}
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function clean {
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clean_file "Crab_Jobs/runthis.sh"
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clean_file "Crab_Jobs/runthis.sh"
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clean_file "Crab_Jobs/crabconfig.cfg"
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clean_file "Crab_Jobs/Modules.tar"
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clean_file "Crab_Jobs/AddFiles.tar"
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clean_file "Crab_Jobs/dummy.py"
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}
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function produce_all_plots {
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directory=$1
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cp ../Limits/PlotScanResults.exec .
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./PlotScanResults.exec $directory
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rm ../Limits/PlotScanResults.exec
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rm LOGerr.txt
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rm Tex.txt
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rm LOG.txt
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echo "All plots have been generated. That's all, now have a look at the results :-)"
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}
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function mail_all_plots {
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tar -cvf Plots.tar $1
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echo "About to send all plots"
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####### DO NOT UPLOAD THE SCRIPT IN THIS LOCATION OR MARCO WILL GET *VERY,VERY,VERY MAD* AT YOU
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/shome/buchmann/material/send_mail_with_attachment.sh $1 Plots.tar
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rm Plots.tar
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}
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name=""
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njobs=1234567890
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while getopts "j:n:h" OPTION
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do
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case $OPTION in
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j)
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njobs=$OPTARG
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echo "Have received option for number of jobs. njobs=$njobs set".
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;;
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n)
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name=$OPTARG
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echo "Have received option for name. name=$name set".
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;;
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h)
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usage
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exit
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;;
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esac
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done
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while [ $njobs -lt 1 ] || [ $njobs -gt 5000 ];
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do
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njobs=0
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echo "Question 1: How many jobs would you like to split this into? (0<njobs<5000), (-j) njobs="
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read njobs
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done
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echo "Accepted number of jobs: $njobs"
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if [[ "$name" == "" ]]; then
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echo ""
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else
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if [ -d "Crab_Jobs/$name" ]; then
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echo "The directory identifier you provided ($name) is taken. Please try again."
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name=""
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else
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echo "The directory identifier you provided ($name) is ok."
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fi
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fi
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if [[ "$name" == "" ]]; then
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echo "Question 2: Name for this job? [no spaces!] (-n) name="
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read name
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fi
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if [ -d "Crab_Jobs/$name" ]; then
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echo "The directory identifier you provided ($name) is also taken. Please start again."
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exit -1
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fi
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echo "Accepted job name : $name"
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echo "We have now established the number of jobs (${njobs}) as well as the jobs name (${name}) which will serve as working directory"
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mkdir -p Crab_Jobs
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eval "cat templates/runthis.sh | sed 's/TOTNJOBS/${njobs}/' > Crab_Jobs/runthis.sh"
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eval "cat templates/crabconfig.cfg | sed 's/NJOBS/${njobs}/' | sed 's/WORKINGDIR/${name}/' > Crab_Jobs/crabconfig.cfg"
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echo "Have generated the run script (runthis.sh) as well as the crab configuration file (crabconfig.cfg); will now attempt to create the crab job"
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cp templates/dummy.py Crab_Jobs/
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cp templates/Fake_Makefile Makefile
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tar -cvf Crab_Jobs/Modules.tar ../../Plotting/Modules/ >/dev/null 2>/dev/null
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tar -cvf Crab_Jobs/AddFiles.tar ../Limits/TimedLimitCapsule.C >/dev/null 2>/dev/null
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tar -rvf Crab_Jobs/AddFiles.tar ../LimitsFromSystematics/WorkerScript.C >/dev/null 2>/dev/null
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tar -rvf Crab_Jobs/AddFiles.tar ../last_configuration.C >/dev/null 2>/dev/null
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tar -rvf Crab_Jobs/AddFiles.tar ../Systematics/SystematicsWorkerScript.C >/dev/null 2>/dev/null
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tar -rvf Crab_Jobs/AddFiles.tar Makefile >/dev/null 2>/dev/null
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bash utils/get_latest_root_version.sh
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rootfilename=`ls | grep root | grep gcc`
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echo "Attaching root file $rootfilename to tarball ..."
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tar -rvf Crab_Jobs/AddFiles.tar $rootfilename >/dev/null 2>/dev/null
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cd Crab_Jobs && crab -create -cfg crabconfig.cfg
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cd ../
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rm Makefile
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if [[ -e Crab_Jobs/$name ]]; then
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echo "Crab seems to have run correctly. Will now clean up a bit."
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rm Crab_Jobs/AddFiles.tar
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rm Crab_Jobs/Modules.tar
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rm Crab_Jobs/dummy.py
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if [[ -f Crab_Jobs/dummy.pyc ]]; then
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rm Crab_Jobs/dummy.pyc
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fi
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rm Crab_Jobs/crabconfig.cfg
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rm Crab_Jobs/runthis.sh
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else
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echo "There seems to have been a problem while trying to generate the crab job (can't find any Crab_Jobs/$name directory); please verify that the crab environment is correctly set up. If you would like to create the crab job manually (and monitor it yourself), you can still do: \n \n cd Crab_Jobs && crab -c crabconfig.cfg -create -submit"
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exit -1
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fi
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echo "Would you like to submit the jobs manually (e.g. for testing) [me] or would you like this script to submit the jobs and monitor them [anything else]?"
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read answer
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if [[ "$answer" == "me" ]]; then
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echo "Command you might need:"
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echo "cd Crab_Jobs && crab -c ${name} -submit"
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echo "You're on your own now. Goodbye!"
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exit 0
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fi
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echo "You chose to have this handled automatically. Please sit back, submitting jobs now!"
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cd Crab_Jobs && crab -c ${name} -submit && cd ..
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echo "Ok, everything has been submitted. Now let's check on the status ... (this will take a long time)"
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### THIS SCRIPT REMAINS ON THE T3!!! DO NOT UPLOAD IT!
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/shome/buchmann/material/check_status_plus_LIST.sh -r `pwd`/Crab_Jobs/${name}
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echo "Now going to fuse everything related to this job: ${name}"
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python utils/fusejobs.py -d ${name}
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rm -r Plots/
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source /swshare/ROOT/thisroot.sh
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produce_all_plots "/scratch/`whoami`/bussolaresults/${name}.root"
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rm -r Plots_${name}/
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mv Plots/ Plots_${name}/
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mail_all_plots Plots_${name}
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echo "Done. Your results are in Plots_${name}/ :-)"
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